Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008127.1 Hibiscus syriacus cultivar Beakdansim tig00110682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110226
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:7073 original size:6 final size:6
Alignment explanation
Indices: 7064--7115 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
7054 GAAGAAAGAG
*
7064 AAGAAA AAGAAA GAGAAA AAGAAA AA-AAA AAG-AA AAG-AA AAG-AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
7108 AAGAAA AA
1 AAGAAA AA
7116 AGGGGGTCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 20 0.48
6 22 0.52
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:7075 original size:15 final size:15
Alignment explanation
Indices: 7055--7115 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
7045 GCTTGAAGAG
*
7055 AAGAAAGAGAAGAAA
1 AAGAAAGAAAAGAAA
7070 AAGAAAGAGAAA-AAGA
1 AAGAAAGA-AAAGAA-A
7086 AA-AAA-AAAAG-AA
1 AAGAAAGAAAAGAAA
7098 AAGAAAAGAAAAGAAA
1 AAG-AAAGAAAAGAAA
7114 AA
1 AA
7116 AGGGGGTCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
12 3 0.08
13 4 0.11
14 4 0.11
15 18 0.47
16 9 0.24
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAGAAAGAAAAGAAA
Found at i:7092 original size:10 final size:11
Alignment explanation
Indices: 7053--7115 Score: 83
Period size: 11 Copynumber: 5.6 Consensus size: 11
7043 ATGCTTGAAG
*
7053 AGAAGAAAGAGA
1 AGAA-AAAGAAA
7065 AGAAAAAGAAA
1 AGAAAAAGAAA
7076 GAGAAAAAGAAA
1 -AGAAAAAGAAA
*
7088 AAAAAAAGAAA
1 AGAAAAAGAAA
7099 AG-AAAAGAAA
1 AGAAAAAGAAA
7109 AGAAAAA
1 AGAAAAA
7116 AGGGGGTCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
10 10 0.22
11 21 0.46
12 15 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:8488 original size:83 final size:83
Alignment explanation
Indices: 8338--8975 Score: 998
Period size: 83 Copynumber: 7.6 Consensus size: 83
8328 AACAAATGCC
*
8338 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
8403 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
* * *
8421 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
*
8486 ATT-AATTTTGAAGAGGA
66 ATTGAATTTGGAAGAGGA
8503 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
*
8568 ATTGAATTCGG-A-AGGA
66 ATTGAATTTGGAAGAGGA
* * *
8584 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
*
8649 ATT-AATTTTGAAGAGGA
66 ATTGAATTTGGAAGAGGA
*
8666 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGAAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
8731 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
8749 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
8814 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
8832 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCA-C
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA--AA--ATC
*
8896 AGAACCAGTTATTGAATTTGGAAGAGGA
62 ---A--A-TCATTGAATTTGGAAGAGGA
* * * * *
8924 ATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTCTCTGATTTGGTTT
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
8976 TATATAAAAC
Statistics
Matches: 514, Mismatches: 27, Indels: 19
0.92 0.05 0.03
Matches are distributed among these distances:
80 5 0.01
81 70 0.14
82 147 0.29
83 220 0.43
85 2 0.00
86 1 0.00
87 1 0.00
89 1 0.00
91 1 0.00
92 66 0.13
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (83 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
ATTGAATTTGGAAGAGGA
Found at i:8651 original size:163 final size:165
Alignment explanation
Indices: 8338--8975 Score: 1039
Period size: 163 Copynumber: 3.8 Consensus size: 165
8328 AACAAATGCC
*
8338 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
8403 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
8468 GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGA
131 GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGA
8503 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
*
8568 ATTGAATTCGG-A-AGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
8631 GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGA
131 GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGA
*
8666 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGAAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
8731 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
* * * *
8796 GGTTTGGTAAAATCAATCATTGAATTTGGAAGAGGA
131 GGTTTGGTAGAACCAGTCATT-AATTTTGAAGAGGA
8832 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCA-C
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA--AA--ATC
* * * *
8896 AGAACCAGTTATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGT
62 ---A--A-TCATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGT
* *
8961 TCTCTGATTTGGTTT
121 TATCTGATCTGGTTT
8976 TATATAAAAC
Statistics
Matches: 445, Mismatches: 15, Indels: 16
0.93 0.03 0.03
Matches are distributed among these distances:
163 160 0.36
164 2 0.00
165 143 0.32
166 68 0.15
168 2 0.00
169 1 0.00
170 1 0.00
172 1 0.00
174 1 0.00
175 66 0.15
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (165 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGA
Found at i:8772 original size:246 final size:248
Alignment explanation
Indices: 8338--8975 Score: 1012
Period size: 246 Copynumber: 2.5 Consensus size: 248
8328 AACAAATGCC
* * * *
8338 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
8403 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
* * * *
8468 GGTTTGGTAGAACCAGTCATTAATTTTGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTC
131 GGTTTGGAAAAACCAATCATTAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTC
8533 TTTGAGTTATCTGATCTGGTTTGGTAAAATCAATCATTGAATTCGG-A-AGGA
196 TTTGAGTTATCTGATCTGGTTTGGTAAAATCAATCATTGAATTCGGAAGAGGA
8584 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
*
8649 ATT-AATTTTGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
*
8713 GGTTTGGAAAAATCAATCATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTT
131 GGTTTGGAAAAACCAATCATT-AATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTT
*
8778 CTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATCATTGAATTTGGAAGAGGA
195 CTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATCATTGAATTCGGAAGAGGA
8832 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACA
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG--T-------A
* * * *
8897 GAACCAGTTATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTT
57 GAACCAGTCATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTT
* *
8962 CTCTGATTTGGTTT
122 ATCTGATCTGGTTT
8976 TATATAAAAC
Statistics
Matches: 361, Mismatches: 18, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
245 77 0.21
246 152 0.42
247 1 0.00
248 58 0.16
250 1 0.00
257 12 0.03
258 60 0.17
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.38
Consensus pattern (248 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAGTC
ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
GGTTTGGAAAAACCAATCATTAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTC
TTTGAGTTATCTGATCTGGTTTGGTAAAATCAATCATTGAATTCGGAAGAGGA
Found at i:8991 original size:92 final size:92
Alignment explanation
Indices: 8814--8991 Score: 268
Period size: 92 Copynumber: 1.9 Consensus size: 92
8804 AAAATCAATC
* * *
8814 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
1 ATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
* *
8879 GGTTTGGTATGAACCACAGAACCAGTT
66 GGTTTGATATAAACCACAGAACCAGTT
* *
8906 ATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTCTCTGATTT
1 ATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
*
8971 GGTTTTATATAAAACC-CAGAA
66 GGTTTGATAT-AAACCACAGAA
8992 ACAATCATTG
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 73 0.95
93 4 0.05
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (92 bp):
ATTGAATTTGGAAGAGGAATATGCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCT
GGTTTGATATAAACCACAGAACCAGTT
Found at i:9912 original size:116 final size:114
Alignment explanation
Indices: 9700--10157 Score: 532
Period size: 116 Copynumber: 4.0 Consensus size: 114
9690 TTAGCAAAGA
* * ** *
9700 TTCAAATCCATCATTTGATGGATCAGTATTTCCAAGTAGAGTTCATAATGAGAAGAACTCGTTAT
1 TTCAAATTCATCACTTGATGGATCAACATTTCCAGGTAGAGTTCATAATGAGAAGAACTC---AT
* * *
9765 -TTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTG
63 CTTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTG
** * * *
9816 TTTGAATTCATCATTTGATGGATTAAAATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATTGC
1 TTCAAATTCATCACTTGATGGATCAACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCA-T-C
* * *
9881 TTGAAGGAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTATG
64 TTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTG
* * * * * *
9932 CTCAAATCCATCACTTGATGGATCAGCTTTTCCAGGTTCGAGTTCATAATGAGAAGAATTCATC-
1 TTCAAATTCATCACTTGATGGATCAACATTTCCAGG-TAGAGTTCATAATGAGAAGAACTCATCT
*
9996 TGAAGAAGGAAGAA-AAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTG
65 TGAAGAAGGAAGAAGAAA-TTCATAATGAGAAGAACTTGTTCAACCTTTTG
* * * *
10046 TTCAAATTCATCACTTGATGGATCAACATTTCCAGAG-AAAGTTCGTAATAAGAAGAACTTAT-T
1 TTCAAATTCATCACTTGATGGATCAACATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCT
* * *
10109 TGAAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTG
65 TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTG
10158 CATAATTCTA
Statistics
Matches: 294, Mismatches: 40, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
112 37 0.13
113 30 0.10
114 74 0.25
115 2 0.01
116 128 0.44
117 23 0.08
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (114 bp):
TTCAAATTCATCACTTGATGGATCAACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTT
GAAGAAGGAAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTTG
Found at i:10226 original size:123 final size:124
Alignment explanation
Indices: 10074--10300 Score: 339
Period size: 124 Copynumber: 1.8 Consensus size: 124
10064 TGGATCAACA
* * * * * * *
10074 TTTCCAGAGAAAGTTCGTAATAAGAAGAACTTATTTG-AAGAGGAAGAAGAAGTTCACAATGAGA
1 TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCAAAATAAGA
* * * *
10138 AGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAGCAGATAGATTAGCATAAACC
66 AGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAGATTAGCATAAACC
10197 TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCAAAATAAGA
1 TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCAAAATAAGA
*
10262 AGAACTTATTCAACCTTTTGAATGACTCTATCACAGAAG
66 AGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAG
10301 GAAATAGGTC
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
123 34 0.37
124 57 0.63
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.25
Consensus pattern (124 bp):
TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCAAAATAAGA
AGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAGATTAGCATAAACC
Found at i:10365 original size:124 final size:122
Alignment explanation
Indices: 10076--10358 Score: 282
Period size: 124 Copynumber: 2.3 Consensus size: 122
10066 GATCAACATT
* * *** * * * *
10076 TCCAGAGAAAGTTCGTAATAAGAAGAACTTAT-TTGAAGAGGAAGAAGAAGTTCACAATGAGAAG
1 TCCAGAGAAAGTTCATAATAAGAAGAACTAATCCCAAAAAGAAAGAAGAAGTTCAAAATAAGAAG
* * * * * * *
10140 AGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAGCAGATAGATTAGCATAAACC
66 AACTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATAAACC
* **
10197 TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCAAAATAAGA
1 --TCCAGAGAAAGTTCATAATAAGAAGAACTAATCCCAAAAAGAAAGAAGAAGTTCAAAATAAGA
* * * * *
10262 AGAACTTATTCAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAACATCATCC
64 AGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATAAACC
* *
10321 -CCAGCAGAAAAGTTCATAATGAGAAGAGCTAATCCCAA
1 TCCAG-AG-AAAGTTCATAATAAGAAGAACTAATCCCAA
10359 GGAAGAATTA
Statistics
Matches: 132, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
121 4 0.03
122 2 0.02
123 55 0.42
124 71 0.54
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (122 bp):
TCCAGAGAAAGTTCATAATAAGAAGAACTAATCCCAAAAAGAAAGAAGAAGTTCAAAATAAGAAG
AACTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATAAACC
Found at i:10518 original size:3 final size:3
Alignment explanation
Indices: 10510--10583 Score: 85
Period size: 3 Copynumber: 24.0 Consensus size: 3
10500 ATTTTAAAAT
* * *
10510 TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TAA TTA TAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
10558 ATA TATA TTA TTA TTTA TTA ATA TTA
1 TTA T-TA TTA TTA -TTA TTA TTA TTA
10584 CAAAACCCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
3 53 0.90
4 6 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:12101 original size:21 final size:22
Alignment explanation
Indices: 12069--12114 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
12059 TGGTATTTTA
12069 AAATTAAATA-TTATAAATATTC
1 AAATTAAATATTTATAAATA-TC
*
12091 AAATT-AATATTTATTAATATC
1 AAATTAAATATTTATAAATATC
12112 AAA
1 AAA
12115 GAAAAGAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATTAAATATTTATAAATATC
Found at i:13099 original size:16 final size:16
Alignment explanation
Indices: 13078--13110 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
13068 GCCTTCATGT
13078 TGGCATCGGTGGGGTA
1 TGGCATCGGTGGGGTA
13094 TGGCATCGGTGGGGTA
1 TGGCATCGGTGGGGTA
13110 T
1 T
13111 CTTCTCACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.48, T:0.27
Consensus pattern (16 bp):
TGGCATCGGTGGGGTA
Found at i:15183 original size:17 final size:17
Alignment explanation
Indices: 15161--15199 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
15151 TGAATTAAAT
*
15161 TAATTATATATTATTTA
1 TAATTAGATATTATTTA
15178 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
15195 -AATTA
1 TAATTA
15200 ATTGTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:15235 original size:39 final size:36
Alignment explanation
Indices: 15154--15238 Score: 89
Period size: 39 Copynumber: 2.2 Consensus size: 36
15144 AAGTGTTTGA
* * *
15154 ATTAAATTAATTATATATTATTTATAATTAGATATT
1 ATTAAATTAATTATAAATTATTTATAATTAGAAAAT
* *
15190 ATTTAAATTAATTGTAAATTATTTTTTTAATTAGAAAAAT
1 A-TTAAATTAATTATAAATTA--TTTATAATTAG-AAAAT
15230 ATTAAATTA
1 ATTAAATTA
15239 TAAAATTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 1 0.03
37 17 0.43
39 18 0.45
40 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (36 bp):
ATTAAATTAATTATAAATTATTTATAATTAGAAAAT
Found at i:15493 original size:10 final size:10
Alignment explanation
Indices: 15474--15504 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
15464 GAAAACAATT
*
15474 AAAATGAAAA
1 AAAATAAAAA
15484 AAAATAAAAA
1 AAAATAAAAA
15494 AAAATAAAAA
1 AAAATAAAAA
15504 A
1 A
15505 GTTGGTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:15736 original size:16 final size:17
Alignment explanation
Indices: 15715--15746 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15705 TTTTATGCCT
15715 GATATT-TATTTTTAGG
1 GATATTATATTTTTAGG
15731 GATATTATATTTTTAG
1 GATATTATATTTTTAG
15747 CCCATGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (17 bp):
GATATTATATTTTTAGG
Found at i:17950 original size:3 final size:3
Alignment explanation
Indices: 17942--18020 Score: 140
Period size: 3 Copynumber: 26.3 Consensus size: 3
17932 ATATTAATTG
*
17942 ATT ATT ATT ATT ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
17990 ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
18021 AATATATTAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:18170 original size:16 final size:16
Alignment explanation
Indices: 18147--18187 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
18137 CCTAATCCCT
18147 AGCCGCCTCTGCCTCCC
1 AGCCGCCTCTGCCT-CC
18164 A-CCGCCTCTGCCTCC
1 AGCCGCCTCTGCCTCC
18179 AGCCGCCTC
1 AGCCGCCTC
18188 AATGGTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.13
16 19 0.83
17 1 0.04
ACGTcount: A:0.07, C:0.59, G:0.17, T:0.17
Consensus pattern (16 bp):
AGCCGCCTCTGCCTCC
Found at i:19377 original size:17 final size:16
Alignment explanation
Indices: 19355--19401 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
19345 ATATAATAAA
19355 TAATAATTTATTTTATT
1 TAATAATTTATTTT-TT
** *
19372 TAATAATAAATTATTT
1 TAATAATTTATTTTTT
19388 TAAT-ATTTATTTTT
1 TAATAATTTATTTTT
19402 CAATATCGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 7 0.29
16 6 0.25
17 11 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TAATAATTTATTTTTT
Found at i:30555 original size:11 final size:11
Alignment explanation
Indices: 30539--30593 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
30529 AAAAAGAGAC
30539 GAAAGAAAAAA
1 GAAAGAAAAAA
*
30550 GAAAGAAAATA
1 GAAAGAAAAAA
30561 -AAAGAAAAATA
1 GAAAGAAAAA-A
30572 -AAAG-AAAAA
1 GAAAGAAAAAA
30581 G-AA-AAAAAA
1 GAAAGAAAAAA
30590 GAAA
1 GAAA
30594 AGAGGGGGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
9 9 0.24
10 14 0.37
11 15 0.39
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.04
Consensus pattern (11 bp):
GAAAGAAAAAA
Found at i:30566 original size:21 final size:20
Alignment explanation
Indices: 30540--30593 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
30530 AAAAGAGACG
30540 AAAGAAAAAAGAAAGAAAATA
1 AAAGAAAAAAGAAAGAAAA-A
30561 AAAGAAAAATA-AAAGAAAAA
1 AAAGAAAAA-AGAAAGAAAAA
*
30581 GAA-AAAAAAGAAA
1 AAAGAAAAAAGAAA
30594 AGAGGGGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.03
19 8 0.27
20 3 0.10
21 17 0.57
22 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (20 bp):
AAAGAAAAAAGAAAGAAAAA
Found at i:31876 original size:83 final size:83
Alignment explanation
Indices: 31733--32207 Score: 853
Period size: 83 Copynumber: 5.7 Consensus size: 83
31723 CATTAACTGA
*
31733 AAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
31798 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* * *
31816 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
31881 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* *
31899 AAGATGAATTTTCTAATAGCATCTTCTGGAAGTGTTATTTGAGTTATCTGATCTGATTTGGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
31964 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* * *
31982 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
32047 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
32065 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
32130 ACCAATCATTGAA-TTGG
66 ACCAATCATTGAATTTGG
*
32147 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGG
32208 TAAGAACTAC
Statistics
Matches: 374, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
82 64 0.17
83 310 0.83
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (83 bp):
AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGCAGA
ACCAATCATTGAATTTGG
Found at i:33310 original size:113 final size:112
Alignment explanation
Indices: 32927--33485 Score: 859
Period size: 112 Copynumber: 5.0 Consensus size: 112
32917 TAGCAAAGAT
*
32927 TCAAATCCATCACTTGATGGATCAGCTTTTCTAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
32992 AGAAGGAAGAAAAAGTTCATAATGAGAAGAGCTTGTTCAACC-TTTGC
66 AGAAGGAAG-AAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
*
33039 CCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGA-AAGAAACTCATCTG
1 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAG-AACTCATCTG
33103 AAGAA-GAAGAAAAAGTTCATAATGAGAAGAGCTTGTTCAACC-TTTGC
65 AAGAAGGAAG-AAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
33150 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
33215 AGAAGGAAGAGAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
66 AGAAGGAAGA-AAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
*
33263 TCAAATCCATCA-TTAGATGGATCAGCTTTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
1 TCAAATCCATCACTT-GATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
* *
33327 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTAC
65 AAGAAGGAAGAA-AAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
* * * *
33376 AT-GAATTCATCAATTGATGGATCAACATTTT-CAGAG-AAGTTCATAATGAGAAGAACTCATCT
1 -TCAAATCCATCACTTGATGGATCAGC-TTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT
* * *
33438 GAAGAAGAAAGAAGAAGTTCATAATAAGAAGA-TTTGTTCAA-CTTTTGC
64 GAAGAAGGAAGAA-AAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
33486 ATAATTCTAT
Statistics
Matches: 423, Mismatches: 14, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
110 6 0.01
111 118 0.28
112 160 0.38
113 133 0.31
114 6 0.01
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (112 bp):
TCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGC
Found at i:33811 original size:3 final size:3
Alignment explanation
Indices: 33798--33868 Score: 64
Period size: 3 Copynumber: 25.0 Consensus size: 3
33788 TTTTTACCCA
*
33798 TAT TAAT TAT TAT TAT T-T ATAA TAT T-T TA- TAT TAT TA- TAT TA-
1 TAT T-AT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
33840 TAT TA- TAT TAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
33869 AAATATATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
2 11 0.20
3 42 0.75
4 3 0.05
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:33817 original size:10 final size:10
Alignment explanation
Indices: 33798--33866 Score: 54
Period size: 10 Copynumber: 6.7 Consensus size: 10
33788 TTTTTACCCA
*
33798 TATTAATTAT
1 TATTATTTAT
33808 TATTATTTAT
1 TATTATTTAT
33818 AATATT-TTATAT
1 --TATTATT-TAT
33830 TATTATATTA-
1 TATTAT-TTAT
33840 TATTATATTAT
1 TATTAT-TTAT
*
33851 CATTA-TTAT
1 TATTATTTAT
33860 TATTATT
1 TATTATT
33867 ATAAATATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
9 8 0.16
10 24 0.49
11 9 0.18
12 8 0.16
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (10 bp):
TATTATTTAT
Found at i:33866 original size:18 final size:17
Alignment explanation
Indices: 33798--33869 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 17
33788 TTTTTACCCA
33798 TATTA-ATTATTATTATT
1 TATTATATTATTATTA-T
*
33815 TATAATATT-TTA-TAT
1 TATTATATTATTATTAT
33830 TATTATATTA-TATTA-
1 TATTATATTATTATTAT
33845 TATTATCATTATTATTAT
1 TATTAT-ATTATTATTAT
33863 TATTATA
1 TATTATA
33870 AATATATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
15 17 0.36
16 8 0.17
17 13 0.28
18 9 0.19
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTATATTATTATTAT
Found at i:33897 original size:33 final size:32
Alignment explanation
Indices: 33826--33916 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 32
33816 ATAATATTTT
* *
33826 ATATTATTAT-ATTATATTATATTATCATTATTA
1 ATATTATTATAAATATATTA-ATTA-CATTATAA
* *
33859 TTATTATTATAAATATATTAAATACATATATAA
1 ATATTATTATAAATATATTAATTACAT-TATAA
*
33892 ATATTATTAAAAATA-ATTAATTACA
1 ATATTATTATAAATATATTAATTACA
33917 AACCAATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
32 12 0.24
33 29 0.59
34 8 0.16
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
ATATTATTATAAATATATTAATTACATTATAA
Found at i:39945 original size:23 final size:23
Alignment explanation
Indices: 39919--39963 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
39909 CACCACAGCT
*
39919 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
39942 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
39964 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:40201 original size:149 final size:149
Alignment explanation
Indices: 39942--40245 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
39932 CGAAGTGCCC
* *
39942 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACGTAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
40007 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
40072 CATATGTCCCGAAGAACCG
131 CATATGTCCCGAAGAACCG
40091 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
*
40156 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCTAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
*
40221 CATATGTCTCGAAGAACCG
131 CATATGTCCCGAAGAACCG
40240 CGTAGA
1 CGTAGA
40246 CCCTCGACTC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCGAAGAACCG
Found at i:41884 original size:21 final size:21
Alignment explanation
Indices: 41854--41898 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
41844 ATTCTGTCGT
*
41854 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
41875 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
41896 TTG
1 TTG
41899 CCCAGAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:44978 original size:23 final size:23
Alignment explanation
Indices: 44952--44996 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
44942 CACCACAGCT
*
44952 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
44975 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
44997 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:45234 original size:149 final size:149
Alignment explanation
Indices: 44975--45278 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
44965 CGAAGTGCCC
* *
44975 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACGTAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
45040 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
45105 CATATGTCCCGAAGAACCG
131 CATATGTCCCGAAGAACCG
45124 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
*
45189 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCTAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
*
45254 CATATGTCTCGAAGAACCG
131 CATATGTCCCGAAGAACCG
45273 CGTAGA
1 CGTAGA
45279 CCCTCGACTC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCGAAGAACCG
Found at i:46898 original size:21 final size:21
Alignment explanation
Indices: 46868--46912 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
46858 ATTCTGTCGT
* *
46868 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
46889 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
46910 TTG
1 TTG
46913 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:48244 original size:34 final size:32
Alignment explanation
Indices: 48204--48287 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 32
48194 GTAATAAACA
* *
48204 AAATTAACCAAATATA-TTAACAAAAATTCCAAC
1 AAATTAACAAAATAAATTTAA-AAAAA-TCCAAC
48237 AATATTAACAAAATAAATTTAAAAAAATCCAACC
1 AA-ATTAACAAAATAAATTTAAAAAAATCCAA-C
*
48271 AAATTAAAAAAAATAAA
1 AAATT-AACAAAATAAA
48288 GTAAGTATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 10 0.23
34 30 0.68
35 4 0.09
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23
Consensus pattern (32 bp):
AAATTAACAAAATAAATTTAAAAAAATCCAAC
Found at i:50474 original size:18 final size:18
Alignment explanation
Indices: 50430--50484 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
50420 ATAATCATAC
* *
50430 ATTAAATAAATAA-ATAA
1 ATTAAATTAATAATTTAA
*
50447 ATTATTATTAATAATTTAA
1 ATTA-AATTAATAATTTAA
50466 ATTAAATTAA-AATGTTAA
1 ATTAAATTAATAAT-TTAA
50484 A
1 A
50485 ATGTTATCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 7 0.23
18 17 0.55
19 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATTAAATTAATAATTTAA
Found at i:60052 original size:19 final size:18
Alignment explanation
Indices: 60008--60055 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
59998 TAGAGAAAGT
*
60008 AAAATAAAGAAGAGAAAA
1 AAAATAAAGAAGACAAAA
* * *
60026 TAAGTAAATAACGACAAAA
1 AAAATAAAGAA-GACAAAA
60045 AAAATAAAGAA
1 AAAATAAAGAA
60056 AAAAATAAAC
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAATAAAGAAGACAAAA
Found at i:60599 original size:20 final size:20
Alignment explanation
Indices: 60570--60613 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
60560 ATTTTGAAAC
60570 ATTT-TGAGGATGAATAGGG
1 ATTTCTGAGGATGAATAGGG
*
60589 ATTTCTGAGGATGAATCGGG
1 ATTTCTGAGGATGAATAGGG
60609 ATTTC
1 ATTTC
60614 CGGGGCTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.27, C:0.07, G:0.32, T:0.34
Consensus pattern (20 bp):
ATTTCTGAGGATGAATAGGG
Found at i:62544 original size:106 final size:106
Alignment explanation
Indices: 62352--62615 Score: 393
Period size: 106 Copynumber: 2.5 Consensus size: 106
62342 TGTATTGTTC
* * * * * *
62352 CGAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGCTCTGGAACTGGAAAATTATTTGTTGATA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACA
*
62417 GTCAGCCGCCCCTTCGTTGTGAAGTTGAGCTTGTGATGTCT
66 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCT
* * * *
62458 CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGTTCTGAAATTGGGAAATTGTTTGTTGGCA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACA
* *
62523 GTCAGCCGCCCCTTTGCTGTGAAGTTGAGCTTGTGCTGTCT
66 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCT
* *
62564 TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAA
62616 CCCCTTCGTC
Statistics
Matches: 141, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 141 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (106 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACA
GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCT
Found at i:63118 original size:14 final size:14
Alignment explanation
Indices: 63101--63127 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63091 TGGTTGCCTA
63101 TCTGGAATCTTGAT
1 TCTGGAATCTTGAT
63115 TCTGGAATCTTGA
1 TCTGGAATCTTGA
63128 AGTTCCGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (14 bp):
TCTGGAATCTTGAT
Found at i:63764 original size:24 final size:24
Alignment explanation
Indices: 63734--63783 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
63724 CTTATTTTTC
63734 TTCTCTTTTTT-TCTTTTGTTCTTT
1 TTCTCTTTTTTCT-TTTTGTTCTTT
*
63758 TTCTCTTTTTTCTTTTTTTTCTTT
1 TTCTCTTTTTTCTTTTTGTTCTTT
63782 TT
1 TT
63784 TTTTCAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (24 bp):
TTCTCTTTTTTCTTTTTGTTCTTT
Found at i:63767 original size:9 final size:8
Alignment explanation
Indices: 63737--63785 Score: 64
Period size: 8 Copynumber: 6.1 Consensus size: 8
63727 ATTTTTCTTC
63737 TCTTTTTT
1 TCTTTTTT
*
63745 TCTTTTGT
1 TCTTTTTT
*
63753 TCTTTTTC
1 TCTTTTTT
63761 TC-TTTTT
1 TCTTTTTT
63768 TCTTTTTTT
1 TC-TTTTTT
63777 TCTTTTTT
1 TCTTTTTT
63785 T
1 T
63786 TTCAATTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
7 6 0.17
8 22 0.63
9 7 0.20
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (8 bp):
TCTTTTTT
Found at i:63786 original size:9 final size:9
Alignment explanation
Indices: 63728--63786 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
63718 ACCCACCTTA
63728 TTTTTCTTCT
1 TTTTTCTT-T
*
63738 CTTTT-TTT
1 TTTTTCTTT
* * *
63746 CTTTTGTTC
1 TTTTTCTTT
*
63755 TTTTTCTCT
1 TTTTTCTTT
63764 TTTTTCTTT
1 TTTTTCTTT
63773 TTTTTCTTT
1 TTTTTCTTT
63782 TTTTT
1 TTTTT
63787 TCAATTTAGG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
8 6 0.15
9 31 0.76
10 4 0.10
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:74260 original size:19 final size:18
Alignment explanation
Indices: 74236--74292 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
74226 AATTGAAAAT
74236 AGAGAAAGTAAAATAAAGA
1 AGAGAAA-TAAAATAAAGA
* *
74255 AGAGAAA-ATAAGTAAATA
1 AGAGAAATA-AAATAAAGA
*
74273 ACGACAAATAAAATAAAGA
1 A-GAGAAATAAAATAAAGA
74292 A
1 A
74293 AAAACAAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 1 0.03
18 8 0.27
19 20 0.67
20 1 0.03
ACGTcount: A:0.68, C:0.04, G:0.16, T:0.12
Consensus pattern (18 bp):
AGAGAAATAAAATAAAGA
Found at i:74691 original size:18 final size:18
Alignment explanation
Indices: 74665--74702 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
74655 TACTAATAAT
74665 AATACTATAA-TATATATA
1 AATACTATAATTA-ATATA
*
74683 AATATTATAATTAATATA
1 AATACTATAATTAATATA
74701 AA
1 AA
74703 ATAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATACTATAATTAATATA
Found at i:74720 original size:17 final size:17
Alignment explanation
Indices: 74698--74733 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
74688 TATAATTAAT
74698 ATAAAATAAAAATAAAA
1 ATAAAATAAAAATAAAA
* *
74715 ATAAAATTAAAATTAAA
1 ATAAAATAAAAATAAAA
74732 AT
1 AT
74734 CCAGAAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
ATAAAATAAAAATAAAA
Found at i:76842 original size:29 final size:29
Alignment explanation
Indices: 76801--76871 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
76791 GAGGAGCAGG
76801 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
76830 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
*
76859 CGGAGTGCATGGC
1 AGGAGTGCATGGC
76872 AAGCTGCCAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.23, C:0.27, G:0.37, T:0.14
Consensus pattern (29 bp):
AGGAGTGCATGGCGACCTACAAGGTCGCC
Found at i:80165 original size:23 final size:23
Alignment explanation
Indices: 80122--80167 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
80112 ACATATTAGA
**
80122 TAGCGCTTATATAATGTAATAGG
1 TAGCGCTTATATAATAAAATAGG
80145 TAGCGCTTATATAATAAAATAGG
1 TAGCGCTTATATAATAAAATAGG
80168 CATTTAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGCGCTTATATAATAAAATAGG
Found at i:80609 original size:199 final size:199
Alignment explanation
Indices: 80301--80956 Score: 796
Period size: 199 Copynumber: 3.3 Consensus size: 199
80291 AAATTTACCT
* *
80301 ATTATAATTATCGGTTTTGATGTTTTTTGGATCGATACAATTT--TAAATGTATCGACACTTTAT
1 ATTATAATTATCGGTTTCGATGTTTTTTGGATCGATAC-TTTTAATAAATGTATCGACACTTTAT
* * * *
80364 GCGTTCACCTCGTTGGGCATTCATTCTGGAAAAAAGTATCGACACAAACTTAA-AGAGTGTCAAT
65 GCGTGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAA-TTAACA-AGTGTCGAT
* * * *
80428 ACATTAT-TTAGACCTATTTTTTCATAAAACCGGTATATTTCTATCGGGTACATTGTAAATTTAC
128 ACATTATGTTAGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTAC
*
80492 CTATCAC
193 CTATTAC
* * *
80499 ATTGTAATTATCGGTTTCGAT-ATTTTTGATATCGATACTTTTAATAAATGTATCGACACTTTAT
1 ATTATAATTATCGGTTTCGATGTTTTTTG-GATCGATACTTTTAATAAATGTATCGACACTTTAT
* * * * *
80563 GCGTGCACC-CATTTGGCATTTATTATGGACAGAATGTATTGACACAAATTTAACAAGTGTCGAT
65 GCGTGCACCTCGTTTGGCATTCATTCTGGACA-AAAGTATCGACACAAA-TTAACAAGTGTCGAT
* * * *
80627 ACTTTATGATA-ACATATTTTCTCATAAAATCGGTATATTTATACCGGTTACATTGTAAATTTAC
128 ACATTATGTTAGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTAC
*
80691 ATATTAC
193 CTATTAC
* * * *
80698 ATTATAATTATCGGTTTTGAT-TTTATTGGGATCGATACTTTTAATAATTGTATCGACATTTTAT
1 ATTATAATTATCGGTTTCGATGTTT-TTTGGATCGATACTTTTAATAAATGTATCGACACTTTAT
*
80762 GTGTGCACCTCGTTTGGGCATTCATTCTGGACAATAAGTATCGACACAAATTACACAAGTGTCGA
65 GCGTGCACCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACACAAATTA-ACAAGTGTCGA
* * ** *
80827 TACGTTATGTT-GACCTGA-TTTCTAAT-TTACCGATATATTTATACCGGTTACATTGTAAATTT
127 TACATTATGTTAGACCT-ATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTT
80889 ACCTATTAC
191 ACCTATTAC
* *
80898 ATTATAATTATTGGTTTCGATGTTTTTTGGGTCGATACTTTTAGA-AAATGTATCGACAC
1 ATTATAATTATCGGTTTCGATGTTTTTTGGATCGATACTTTTA-ATAAATGTATCGACAC
80957 ATATTTAGGT
Statistics
Matches: 390, Mismatches: 53, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
197 9 0.02
198 44 0.11
199 173 0.44
200 101 0.26
201 62 0.16
202 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (199 bp):
ATTATAATTATCGGTTTCGATGTTTTTTGGATCGATACTTTTAATAAATGTATCGACACTTTATG
CGTGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAATTAACAAGTGTCGATACA
TTATGTTAGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTA
TTAC
Found at i:81138 original size:14 final size:14
Alignment explanation
Indices: 81119--81148 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
81109 ACCACTGAAC
81119 TTGCACAACAAAAT
1 TTGCACAACAAAAT
81133 TTGCACAACAAAAT
1 TTGCACAACAAAAT
81147 TT
1 TT
81149 TTTCCATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (14 bp):
TTGCACAACAAAAT
Found at i:86007 original size:201 final size:200
Alignment explanation
Indices: 85080--86249 Score: 1810
Period size: 200 Copynumber: 5.8 Consensus size: 200
85070 CATGTTATTT
* * * * * * * *
85080 AAAAGTATCGATAAAAATTT-AAAAGTGTTGATACATTATGTTGACATATTCTCTCATAAAACTG
1 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
* * *
85144 GTATATTTATATTGGTTACATTTTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
66 GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
* * * * * *
85209 TGGGATCGATTCTTTTTAAAAATATATCGACACTTTATGCGTGCAACCCTTTT-GGCATTCATTT
131 TGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTC-ACCATTTTGGGCATTCATTC
85273 TGGACA
195 TGGACA
* * * * * *
85279 AAAAATATCGACACAAATCTAAAACA-TGTCGATACGTTATGTTCACTTATTTTCTCATAAAATC
1 AAAAGTATCGACACAAATTTAAAA-AGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACC
* *
85343 GGTACATTTATA-TCGGTTACATTG-AGAATTTACCTATTACATTATAATTACTGGTTTCGATGT
65 GGTATATTTATACT-GGTTACATTGTA-AATTTACCTATTACATTATAATTATTGGTTTCGATGT
85406 TTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCAT
128 TTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCAT
85471 TCTGGACA
193 TCTGGACA
85479 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
1 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
*
85544 GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCCATGTTTT
66 GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
*
85609 TAGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
131 TGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
85674 GGACA
196 GGACA
* *
85679 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCCCCTATTTTCTCATAAAATCG
1 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
*
85744 ATATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
66 GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
* *
85809 TGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCTTTCACCATTTTGGGCATTCATTAT
131 TGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
85874 GGACA
196 GGACA
**
85879 AAAAGTATCGACACAAATTTAAAAAAGTGTCGACACATTATGTTCACAGATTTTCTCATAAAACC
1 AAAAGTATCGACACAAATTT-AAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACC
*
85944 GGTATATTTATACTTGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTT
65 GGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTT
*
86009 TTGGGATCGATATTTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATT
130 TTGGGATCGATA-CTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATT
*
86074 CCGGACA
194 CTGGACA
* * * * * *
86081 AAAAGTATTGACACAAATCTAAAATGTGTCGATACGTTATGTTCACCTATTTTCTCATAAAACCA
1 AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
* * * *
86146 GTACATTTATACCGATTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
66 GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
* *
86211 TGGGATTGATACTTTTTAAAAATGTATCGACACTTTATG
131 TGGGATCGATACTTTTTATAAATGTATCGACACTTTATG
86250 GGAAACTTTA
Statistics
Matches: 897, Mismatches: 64, Indels: 19
0.92 0.07 0.02
Matches are distributed among these distances:
199 26 0.03
200 571 0.64
201 227 0.25
202 73 0.08
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (200 bp):
AAAAGTATCGACACAAATTTAAAAAGTGTCGACACATTATGTTCACCTATTTTCTCATAAAACCG
GTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTT
TGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCT
GGACA
Found at i:86670 original size:24 final size:24
Alignment explanation
Indices: 86629--86679 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
86619 CGAAATTTAT
86629 ATTGAAACTCAAACTCAAACTCAA
1 ATTGAAACTCAAACTCAAACTCAA
* * * *
86653 ATTGAAATTTAAATTCAAACTCCA
1 ATTGAAACTCAAACTCAAACTCAA
86677 ATT
1 ATT
86680 ACATATGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (24 bp):
ATTGAAACTCAAACTCAAACTCAA
Found at i:87989 original size:3 final size:3
Alignment explanation
Indices: 87974--88032 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
87964 ACTTGTTTGG
* * * *
87974 ATC ATC ATA ATC ATC ATC ATC GTC GTC ATC ATC ATC ATC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
88022 TTC ATC TTC AT
1 ATC ATC ATC AT
88033 TGACCTCTTG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.27, C:0.31, G:0.05, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:88006 original size:18 final size:18
Alignment explanation
Indices: 87983--88032 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
87973 GATCATCATA
*
87983 ATCATCATCATCGTCGTC
1 ATCATCATCATCATCGTC
88001 ATCATCATCATCATCGTC
1 ATCATCATCATCATCGTC
* *
88019 ATCTTCATCTTCAT
1 ATCATCATCATCAT
88033 TGACCTCTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.24, C:0.32, G:0.06, T:0.38
Consensus pattern (18 bp):
ATCATCATCATCATCGTC
Found at i:90528 original size:400 final size:395
Alignment explanation
Indices: 89508--90650 Score: 1563
Period size: 400 Copynumber: 2.9 Consensus size: 395
89498 ATTTAAAATT
* *
89508 GTATCGACACAAATAT-AAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGTA
1 GTATCGACACAAAT-TCAAAA-GTGTCGATACATTATGTTGACCTATTTTCTCATAAAACTGGTA
* *
89572 AATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAACTATCGGTTTCGATGTTTTTGG
64 TATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
* * * **
89637 GATCGATACTTTTTATATATGTATCGACACATTATGTGTTCACCATTTTGACCATTCATTCTGGA
129 GATCGATACTTTTTATAAATGTATCGACACA-TATGCGTTCATCATTTTGGGCATTCATTCTGGA
* *
89702 CAAAAAGTATCGACACAAATTCAAAAATGTCGACACATTATGTAGACCTATTCTCACATAAAACC
193 CAAAAAGTATCGACACAAAATCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACC
* * * * *
89767 GGTATATTTATATCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
258 GGTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * * **
89832 TTGGGATCGATATTTTT-TATATATGTATCGACTTTATGCGTTCACCATTTTGGGCATTCATTAT
323 TTGGGATCGATATTTTTATA-AAATATATAGACTTTATGCGCACACCATTTTGGGCATTCATTAT
*
89896 GGATAAAAA
387 GGACAAAAA
* * * * *
89905 GTATCGACACAAATTCAAAAGTGTCGACACATTACGTTGACCTATTCTCACATAAAACTGATATA
1 GTATCGACACAAATTCAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACTGGTATA
* * * *
89970 TTTAGACAGATTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGA
66 TTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
* ** *
90035 TCGATACCTTTTATAAATGTATCGACATTTTATGCGTTCATCATTTGGGGCATTCATTCTGGACA
131 TCGATACTTTTTATAAATGTATCGACA-CATATGCGTTCATCATTTTGGGCATTCATTCTGGACA
* *
90100 AAAAATATCGACACAAAATTAAAAAGTGTCGACA-ATTTATGTAGACCTATTCTCACATAAAACC
195 AAAAGTATCGACACAAAA-TCAAAAGTGTCGACACA-TTATGTAGACCTATTCTCACATAAAACC
* * * * *
90164 AGTATATTTATACCAGTTATATTACAAAATTATCTATTATATTATAATTAGGGGTTTCGATGTTT
258 GGTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * * *
90229 TTGGGATCGACACTTTTTATAAAATATATAGAAACTTTATGGGCACACCCTTTTGGGCATTCCTT
323 TTGGGATCGATA-TTTTTATAAAATATATAG--ACTTTATGCGCACACCATTTTGGGCATTCATT
* *
90294 CTGGACAAACA
385 ATGGACAAAAA
* * *
90305 GTATCGACACAAATTCCATAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATTGGTAT
1 GTATCGACACAAATT-CAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACTGGTAT
* * * * *
90370 AGTTATACCGGTTACATTGTAAATTTACCTATTACATTATATTTATGGGTTTCAATGTTTCTGGG
65 ATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGG
* *
90435 ATCGATATTTTTTATAAATGTATCGACACAAATGCGTTCATCATTTTGGGCATTCATTCTGGACA
130 ATCGATACTTTTTATAAATGTATCGACACATATGCGTTCATCATTTTGGGCATTCATTCTGGACA
* * * * * *
90500 AAAAGTATCGACATAAAATGAGAAAGTGTCAATACATTATGTAGACCTATTCTCATATAAATCCG
195 AAAAGTATCGACACAAAATCA-AAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCG
90565 GTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
259 GTATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
* *
90630 TAGGATCAATATTTTTATAAA
324 TGGGATCGATATTTTTATAAA
90651 TGCATCGACA
Statistics
Matches: 649, Mismatches: 86, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
396 170 0.26
397 125 0.19
398 12 0.02
399 14 0.02
400 204 0.31
401 124 0.19
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (395 bp):
GTATCGACACAAATTCAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACTGGTATA
TTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
TCGATACTTTTTATAAATGTATCGACACATATGCGTTCATCATTTTGGGCATTCATTCTGGACAA
AAAGTATCGACACAAAATCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGT
ATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTG
GGATCGATATTTTTATAAAATATATAGACTTTATGCGCACACCATTTTGGGCATTCATTATGGAC
AAAAA
Found at i:90545 original size:199 final size:198
Alignment explanation
Indices: 89508--90666 Score: 1417
Period size: 199 Copynumber: 5.8 Consensus size: 198
89498 ATTTAAAATT
* ** * *
89508 GTATCGACACAAATAT-AAAACGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGTA
1 GTATCGACACAAA-ATCAAAA-GTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTA
* * *
89572 AATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAACTATCGGTTTCGATGTTTTTGG
64 TATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
* * **
89637 GATCGATACTTTTTATATATGTATCGACACATTATGTGTTCACCATTTTGACCATTCATTCTGGA
129 GATCGATACTTTTTATAAATGTATCGACACA-TATGCGTTCACCATTTTGGGCATTCATTCTGGA
89702 CAAAAA
193 CAAAAA
* *
89708 GTATCGACACAAATTCAAAAATGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
1 GTATCGACACAAAATCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
*
89773 TTTATATCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
66 TTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
* * ** * *
89838 TCGATATTTTTTATATATGTATCGAC-TTTATGCGTTCACCATTTTGGGCATTCATTATGGATAA
131 TCGATACTTTTTATAAATGTATCGACACATATGCGTTCACCATTTTGGGCATTCATTCTGGACAA
89902 AAA
196 AAA
* * * * *
89905 GTATCGACACAAATTCAAAAGTGTCGACACATTACGTTGACCTATTCTCACATAAAACTGATATA
1 GTATCGACACAAAATCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
* * * * *
89970 TTTAGACAGATTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGA
66 TTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
* ** * *
90035 TCGATACCTTTTATAAATGTATCGACATTTTATGCGTTCATCATTTGGGGCATTCATTCTGGACA
131 TCGATACTTTTTATAAATGTATCGACA-CATATGCGTTCACCATTTTGGGCATTCATTCTGGACA
90100 AAAA
195 AAAA
* * *
90104 ATATCGACACAAAATTAAAAAGTGTCGACA-ATTTATGTAGACCTATTCTCACATAAAACCAGTA
1 GTATCGACACAAAA-TCAAAAGTGTCGACACA-TTATGTAGACCTATTCTCACATAAAACCGGTA
* * * * * * **
90168 TATTTATACCAGTTATATTACAAAATTATCTATTATATTATAATTAGGGGTTTCGATGTTTTTGG
64 TATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
* * * * * * ** * *
90233 GATCGACACTTTTTATAAAATATATAGAAACTTTATGGGCACACCCTTTTGGGCATTCCTTCTGG
129 GATCGATACTTTTTAT-AAATGTATCGACAC-ATATGCGTTCACCATTTTGGGCATTCATTCTGG
*
90298 ACAAACA
192 ACAAAAA
* * * * * **
90305 GTATCGACACAAATTCCATAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAATTGGTAT
1 GTATCGACACAAAAT-CAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* * * * * *
90370 AGTTATACCGGTTACATTGTAAATTTACCTATTACATTATATTTATGGGTTTCAATGTTTCTGGG
65 ATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGG
* * *
90435 ATCGATATTTTTTATAAATGTATCGACACAAATGCGTTCATCATTTTGGGCATTCATTCTGGACA
130 ATCGATACTTTTTATAAATGTATCGACACATATGCGTTCACCATTTTGGGCATTCATTCTGGACA
90500 AAAA
195 AAAA
* * * * * *
90504 GTATCGACATAAAATGAGAAAGTGTCAATACATTATGTAGACCTATTCTCATATAAATCCGGTAT
1 GTATCGACACAAAATCA-AAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTAT
* * * * *
90569 ATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTAGG
65 ATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGG
* *
90634 ATCAATA-TTTTTATAAATGCATCGACACATATG
130 ATCGATACTTTTTATAAATGTATCGACACATATG
90667 TTTACCTATT
Statistics
Matches: 818, Mismatches: 131, Indels: 22
0.84 0.13 0.02
Matches are distributed among these distances:
197 176 0.22
198 25 0.03
199 321 0.39
200 136 0.17
201 159 0.19
202 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (198 bp):
GTATCGACACAAAATCAAAAGTGTCGACACATTATGTAGACCTATTCTCACATAAAACCGGTATA
TTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGGA
TCGATACTTTTTATAAATGTATCGACACATATGCGTTCACCATTTTGGGCATTCATTCTGGACAA
AAA
Found at i:92170 original size:18 final size:18
Alignment explanation
Indices: 92147--92185 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
92137 TCCTCCTCAT
92147 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
92165 TTCCTCCCTCTTTTCTTC
1 TTCCTCCCTCTTTTCTTC
92183 TTC
1 TTC
92186 ATATTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCCTCTTTTCTTC
Found at i:92407 original size:33 final size:33
Alignment explanation
Indices: 92370--92436 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
92360 CCATCTTAAG
*
92370 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTCCTTTCACCAC
*
92403 TTCACCCCTGAACACCTCAACTCCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTCCTTTCACCAC
92436 T
1 T
92437 CTATCTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.48, G:0.01, T:0.27
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTCCTTTCACCAC
Found at i:92495 original size:21 final size:21
Alignment explanation
Indices: 92470--92513 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
92460 CCTCTTATGC
92470 CTCTCAAGTGTCTATTCGACT
1 CTCTCAAGTGTCTATTCGACT
* *
92491 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTCTATTCGACT
92512 CT
1 CT
92514 TGATTTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTCTATTCGACT
Found at i:92616 original size:15 final size:15
Alignment explanation
Indices: 92596--92628 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
92586 ACTCTATTTT
92596 CCCTCACCGTCATCC
1 CCCTCACCGTCATCC
92611 CCCTCACCGTCATCC
1 CCCTCACCGTCATCC
92626 CCC
1 CCC
92629 AATACAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.64, G:0.06, T:0.18
Consensus pattern (15 bp):
CCCTCACCGTCATCC
Found at i:95105 original size:182 final size:182
Alignment explanation
Indices: 94798--95652 Score: 1241
Period size: 182 Copynumber: 4.7 Consensus size: 182
94788 TACGCGTACT
* * * * * * *
94798 TATTAAAATATCGACACTTTCAATATATCCGGTAGCGCTTTATCGGTTTTGTCATTTCGATACTG
1 TATTAAAATATCGACACTTTCAATATATCCGGTAGCTCTATACCGGTTTTGTCTTTTAGAGACCG
* * *
94863 GTTTTGTCATATTTTTACTTGTTATATCATTATGGATCGATACATTTTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACACT
*
94928 TTATAGGCGCTACAACTGCTTCTCTTTTAAATTCA-ATAAGTGTCGATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACA-AAGTGTCGATACTTA
* * *
94980 TATTAAAGTATCGACACTTTCAATATATCCGGTTGCTCTATACCGATTTTGTCTTTTAGAGACCG
1 TATTAAAATATCGACACTTTCAATATATCCGGTAGCTCTATACCGGTTTTGTCTTTTAGAGACCG
* *
95045 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATTCATTGTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACACT
* * *
95110 TTATAGGCGCTAAAATTGCTTCTCTTTTAAACTCACAAAGTGTTGATACTTA
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
*
95162 TATTAAAATATCGACACTTTCAATATATCCGGTCGCTCTATACCGGTTTTGT-TCTTTAGAGACC
1 TATTAAAATATCGACACTTTCAATATATCCGGTAGCTCTATACCGGTTTTGTCT-TTTAGAGACC
* * *
95226 GGTTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACAT
65 GGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACAC
95291 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
130 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * * * *
95344 TATTAAAGTATCGAGACTTTCAATATATTCGGTAGCGT-TTTACCGGTTTTGTCCTTTAGAGA-T
1 TATTAAAATATCGACACTTTCAATATATCCGGTAGC-TCTATACCGGTTTTGTCTTTTAGAGACC
* * *
95407 GGTTTTGTCATATTTTTTCCTGTTATATCGTTATGGATTGATACATTTTTATAAAGTATCGACAC
65 GGTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACAC
95472 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
130 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * * * * * * * * *
95525 TATTAAATTATAGATACTTTCAATATATCCAGTATCGCTTTACCGATTTTATCTTTTCGTGACCG
1 TATTAAAATATCGACACTTTCAATATATCCGGTAGCTCTATACCGGTTTTGTCTTTTAGAGACCG
* * *
95590 GTTTTGTCATATTTTTTCCTGTTATATTGATGTGGATCGATACATTTTTATAAAGTATCGACA
66 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACA
95653 TAAACCGACA
Statistics
Matches: 609, Mismatches: 58, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
181 162 0.27
182 445 0.73
183 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (182 bp):
TATTAAAATATCGACACTTTCAATATATCCGGTAGCTCTATACCGGTTTTGTCTTTTAGAGACCG
GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACACT
TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:96335 original size:51 final size:51
Alignment explanation
Indices: 96254--96360 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
96244 ACCGAATAAA
* * *
96254 TTAAAAATATTAGATAATATAAATTATTTATATATTATTTATAAACTTTGG
1 TTAATAATATTAGATAATATAAAATATTTATATATTATTTATAAACTTTAG
*
96305 TTAATAATATTAGATAATATAAAATATTTATATATTATTTATAAATTTTAG
1 TTAATAATATTAGATAATATAAAATATTTATATATTATTTATAAACTTTAG
96356 TTAAT
1 TTAAT
96361 TCGATTAACT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.49
Consensus pattern (51 bp):
TTAATAATATTAGATAATATAAAATATTTATATATTATTTATAAACTTTAG
Found at i:107700 original size:29 final size:29
Alignment explanation
Indices: 107645--107732 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
107635 AAAATATATA
* * *
107645 ATTAATTTCTTGAATATAAGATATTATTTT
1 ATTAATTT-TTTATTATAAGATGTTATTTT
* **
107675 ATTAATTTTTTATTATTAGATGTTA-TAA
1 ATTAATTTTTTATTATAAGATGTTATTTT
*
107703 AATAATTTTTTAATTATAAGATGTTATTTT
1 ATTAATTTTTT-ATTATAAGATGTTATTTT
107733 GTTGAGTCGA
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
28 11 0.24
29 26 0.57
30 9 0.20
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.56
Consensus pattern (29 bp):
ATTAATTTTTTATTATAAGATGTTATTTT
Done.