Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008129.1 Hibiscus syriacus cultivar Beakdansim tig00110684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2577775
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 10
Found at i:547246 original size:18 final size:18
Alignment explanation
Indices: 547225--547261 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
547215 GTAATTGGAG
547225 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
547243 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
547261 T
1 T
547262 ATATATTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:547562 original size:39 final size:39
Alignment explanation
Indices: 547519--547644 Score: 234
Period size: 39 Copynumber: 3.2 Consensus size: 39
547509 TCCGATGCTC
* *
547519 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
547558 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
547597 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
547636 ATCAAAATC
1 ATCAAAATC
547645 TACAACTTGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.48, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:548079 original size:23 final size:23
Alignment explanation
Indices: 548048--548111 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
548038 ATAGGTAAAC
*
548048 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
548071 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
548094 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
548112 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:548118 original size:23 final size:23
Alignment explanation
Indices: 548048--548120 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
548038 ATAGGTAAAC
* **
548048 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
548071 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
548094 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
548117 ATAT
1 ATAT
548121 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:550692 original size:32 final size:32
Alignment explanation
Indices: 550632--550692 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
550622 ACATTATTAC
* *
550632 GTGTACATTATCTGAATGCAAACCTGACTATA
1 GTGTACATTATCTAAATGCAAACATGACTATA
*
550664 GTGTGCATTATCTAAATGC-AACAATGACT
1 GTGTACATTATCTAAATGCAAAC-ATGACT
550693 CTGATGTGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 3 0.12
32 22 0.88
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (32 bp):
GTGTACATTATCTAAATGCAAACATGACTATA
Found at i:552839 original size:15 final size:15
Alignment explanation
Indices: 552819--552847 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
552809 ATGTGTACAG
552819 ATAATAACATACAAC
1 ATAATAACATACAAC
552834 ATAATAACATACAA
1 ATAATAACATACAA
552848 TATTAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21
Consensus pattern (15 bp):
ATAATAACATACAAC
Found at i:557900 original size:45 final size:45
Alignment explanation
Indices: 557822--558031 Score: 312
Period size: 45 Copynumber: 4.6 Consensus size: 45
557812 CGCTATTATA
* * * *
557822 CATTTCATTTATGGCATTCTTTAATACCCATAATGCACCCATATG
1 CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATG
*
557867 CATTTCAATTATGGCATCCTTTCATGCCGATAATGCACCCATATG
1 CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATG
*
557912 CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATACA
1 CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATAT--G
*
557959 CTATTTTCATTTATGGCATCCTTTCATGCTGATAATGCACCCATATG
1 C-A-TTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATG
*
558006 CATTTCATTTATGTCATCCTTTCATG
1 CATTTCATTTATGGCATCCTTTCATG
558032 ACTTTTTATA
Statistics
Matches: 151, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
45 106 0.70
46 1 0.01
47 2 0.01
48 1 0.01
49 41 0.27
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (45 bp):
CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATG
Found at i:557996 original size:94 final size:90
Alignment explanation
Indices: 557822--558031 Score: 312
Period size: 94 Copynumber: 2.3 Consensus size: 90
557812 CGCTATTATA
* * * *
557822 CATTTCATTTATGGCATTCTTTAATACCCATAATGCACCCATATGCATTTCAATTATGGCATCCT
1 CATTTCATTTATGGCATCCTTTCATGCCCATAATGCACCCATATACATTTCAATTATGGCATCCT
557887 TTCATGCCGATAATGCACCCATATG
66 TTCATGCCGATAATGCACCCATATG
* *
557912 CATTTCATTTATGGCATCCTTTCATGCCGATAATGCACCCATATACACTATTTTCATTTATGGCA
1 CATTTCATTTATGGCATCCTTTCATGCCCATAATGCACCCATAT--AC-A-TTTCAATTATGGCA
*
557977 TCCTTTCATGCTGATAATGCACCCATATG
62 TCCTTTCATGCCGATAATGCACCCATATG
*
558006 CATTTCATTTATGTCATCCTTTCATG
1 CATTTCATTTATGGCATCCTTTCATG
558032 ACTTTTTATA
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
90 40 0.37
92 1 0.01
93 1 0.01
94 66 0.61
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (90 bp):
CATTTCATTTATGGCATCCTTTCATGCCCATAATGCACCCATATACATTTCAATTATGGCATCCT
TTCATGCCGATAATGCACCCATATG
Found at i:558063 original size:46 final size:46
Alignment explanation
Indices: 558006--558128 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
557996 CACCCATATG
*
558006 CATTTCATTTATGTCATCCTTTCATGACTTTTTATACGCTATTATA
1 CATTTCATTTATGTCATCCTTTCATGACCTTTTATACGCTATTATA
* * * *
558052 CATTTCATTTATGGCATCATTTCATGCCCTTTTATACGTTATTATA
1 CATTTCATTTATGTCATCCTTTCATGACCTTTTATACGCTATTATA
*
558098 CATTTCATTTATGTCATCCTTTCATGCCCTT
1 CATTTCATTTATGTCATCCTTTCATGACCTT
558129 GATACAACGT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.49
Consensus pattern (46 bp):
CATTTCATTTATGTCATCCTTTCATGACCTTTTATACGCTATTATA
Found at i:558300 original size:81 final size:81
Alignment explanation
Indices: 558160--558315 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
558150 ATACATCTAG
* * * * * *
558160 TCTTTTACTTAAAGACATTTAACCTTTCGTCTAACTAGCAAGATTGACACCTTTTTGTCAAATTC
1 TCTTTTACTCAAAGACATTTAACCTTCCATCTAACTAGCAAGATTGACACATTTCTGTCAAATGC
558225 ACAGCTAGGCTATTAA
66 ACAGCTAGGCTATTAA
** *
558241 TCTTTTACTCAAAGGTATTTAACCTTCCATCTAACTGGCATA-ATTGACACATTTCTGTCAAATG
1 TCTTTTACTCAAAGACATTTAACCTTCCATCTAACTAGCA-AGATTGACACATTTCTGTCAAATG
558305 CACAGCTAGGC
65 CACAGCTAGGC
558316 CTCAAAGGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 64 0.98
82 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAAAGACATTTAACCTTCCATCTAACTAGCAAGATTGACACATTTCTGTCAAATGC
ACAGCTAGGCTATTAA
Found at i:558364 original size:68 final size:68
Alignment explanation
Indices: 558248--558724 Score: 783
Period size: 68 Copynumber: 7.0 Consensus size: 68
558238 TAATCTTTTA
* * * * * *
558248 CTCAAAGGTATTTAACCTTCCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558313 GGC
66 GGC
* *
558316 CTCAAAGGCACTTAGCCTTTAATCTAACTGGCATAATTTACACCTTTCTGTCAAATGCACAACTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558381 GGC
66 GGC
* *
558384 CTCAAAGGTACTTAGCCTTTCATCTAACTGGCATACTTGACACCTTTCTGTCAAATGCACAACTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558449 GGC
66 GGC
* * *
558452 CTCAAAGGCACTTAGCCTTTCATCTAACTAGCATACTTGACACCTTTCTGTCAAATGCACAGCTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558517 GGC
66 GGC
* *
558520 CTCAAAGGCACTTAGCCTTTCAACTAACTGACATAATTGACACCTTTCTGTCAAATGCACAACTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558585 GGC
66 GGC
* * *
558588 CTCAAAGGCACTTAGCCTTTCATCTAATTGGCATAATTGACACCTTTCTGTCAAATGCATAGCTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558653 GGC
66 GGC
*
558656 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGCACAACTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
558721 GGC
66 GGC
558724 C
1 C
558725 ATGAATCTTT
Statistics
Matches: 380, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 380 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (68 bp):
CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAACTA
GGC
Found at i:558995 original size:57 final size:57
Alignment explanation
Indices: 558934--559091 Score: 183
Period size: 57 Copynumber: 2.8 Consensus size: 57
558924 GTTCTTATAG
* * * *
558934 GGAAATTTATAAACAACTTATGAATTTCTTAACTTTTTACACCCGAAA-TGCCCATAT
1 GGAAATTAATAAACAAATTATGAATTTCTTAACTTTTTACACAC-AAAGTGCCCATAC
* * * *
558991 GGAAATTCATAAATAAATTATGAATTTATTAACTTTTTTCACACAAAGTGCCCATAC
1 GGAAATTAATAAACAAATTATGAATTTCTTAACTTTTTACACACAAAGTGCCCATAC
** * * *
559048 AAAAATTAATAAACAAAGTATAAATTTCTTAACTTTTTGCACAC
1 GGAAATTAATAAACAAATTATGAATTTCTTAACTTTTTACACAC
559092 TCAGTTCCAT
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
56 3 0.04
57 82 0.96
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (57 bp):
GGAAATTAATAAACAAATTATGAATTTCTTAACTTTTTACACACAAAGTGCCCATAC
Found at i:568299 original size:21 final size:21
Alignment explanation
Indices: 568275--568344 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
568265 AGGTAGTACT
568275 GATACTCATTAAAAGAGTATC
1 GATACTCATTAAAAGAGTATC
568296 GATACTCATTAAAAGAGTATC
1 GATACTCATTAAAAGAGTATC
568317 GATACTCATTAAAAGAGTA-C
1 GATACTCATTAAAAGAGTATC
568337 TGATACTC
1 -GATACTC
568345 CCTGTTCTGG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 1 0.02
21 47 0.98
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (21 bp):
GATACTCATTAAAAGAGTATC
Found at i:569160 original size:5 final size:5
Alignment explanation
Indices: 569142--569257 Score: 177
Period size: 5 Copynumber: 23.4 Consensus size: 5
569132 TTTATTTTTT
569142 TAATA TATATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TA-ATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
569193 T-A-A TAATA TAATA TAATA TAATA TAATA TAATA T-A-A TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
569239 TAATA TATATA TATATA TA
1 TAATA TA-ATA TA-ATA TA
569258 GATGGATGGA
Statistics
Matches: 105, Mismatches: 0, Indels: 11
0.91 0.00 0.09
Matches are distributed among these distances:
3 4 0.04
4 4 0.04
5 81 0.77
6 16 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:569204 original size:33 final size:34
Alignment explanation
Indices: 569142--569257 Score: 191
Period size: 33 Copynumber: 3.4 Consensus size: 34
569132 TTTATTTTTT
569142 TAATATATATATAATATAATATAATATAATATAATA
1 TAATATATATATAATAT-A-ATAATATAATATAATA
569178 TAATATA-ATATAATATAATAATATAATATAATA
1 TAATATATATATAATATAATAATATAATATAATA
569211 TAATATA-ATATAATATAATAATATAATATAATA
1 TAATATATATATAATATAATAATATAATATAATA
569244 TATATATATATATA
1 TA-ATATATATATA
569258 GATGGATGGA
Statistics
Matches: 78, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
33 51 0.65
34 6 0.08
35 14 0.18
36 7 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (34 bp):
TAATATATATATAATATAATAATATAATATAATA
Found at i:569927 original size:36 final size:36
Alignment explanation
Indices: 569872--569942 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
569862 CTTTGTAATT
*
569872 TTATATATACCTATTACTTGTAAATTTCAATTCATC
1 TTATATATACCTATCACTTGTAAATTTCAATTCATC
*
569908 TTATATATATCTATCACTTGTAAATTTCAATTCAT
1 TTATATATACCTATCACTTGTAAATTTCAATTCAT
569943 TAAATATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (36 bp):
TTATATATACCTATCACTTGTAAATTTCAATTCATC
Found at i:569950 original size:36 final size:36
Alignment explanation
Indices: 569874--569951 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
569864 TTGTAATTTT
* *
569874 ATATATACCTATTACTTGTAAATTTCAATTCATCTT
1 ATATATACCTATCACTTGTAAATTTCAATTCATCTA
*
569910 ATATATATCTATCACTTGTAAATTTCAATTCAT-TA
1 ATATATACCTATCACTTGTAAATTTCAATTCATCTA
569945 A-ATATAC
1 ATATATAC
569952 AAATCCTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 5 0.13
35 2 0.05
36 31 0.82
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45
Consensus pattern (36 bp):
ATATATACCTATCACTTGTAAATTTCAATTCATCTA
Found at i:570933 original size:19 final size:20
Alignment explanation
Indices: 570909--570950 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
570899 TATTATATAT
570909 ATATTTATGAATAT-ATAAA
1 ATATTTATGAATATAATAAA
**
570928 ATATTTATTCATATAATAAA
1 ATATTTATGAATATAATAAA
570948 ATA
1 ATA
570951 AAAATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
ATATTTATGAATATAATAAA
Found at i:572248 original size:3 final size:3
Alignment explanation
Indices: 572240--572294 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
572230 TTAATATATT
*
572240 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
572288 TGA TAA T
1 TAA TAA T
572295 GATATGGGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:572870 original size:113 final size:113
Alignment explanation
Indices: 572618--573289 Score: 1175
Period size: 113 Copynumber: 6.0 Consensus size: 113
572608 AGAATTATGC
* * * *
572618 AAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
572683 TATGAAC-TTCTCCGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
*
572730 AAAAGGTTGAACAAATTCTTCTAATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
572795 TATGAACTTTCTCTGGAAAAGATGATCCCTCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
572843 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
572908 TTTGAACTTTCTCTGGAAAAGCTGATCCCTCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
572956 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
573021 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
573069 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
573134 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
573182 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* ** *
573247 TATGAACTTTCTCTGGAAAAGCTAATCTTTCAAATGATAGATT
66 TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATT
573290 TGAATCTTTG
Statistics
Matches: 541, Mismatches: 18, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
112 68 0.13
113 473 0.87
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGATTCAGGT
Found at i:574343 original size:83 final size:82
Alignment explanation
Indices: 574082--574595 Score: 726
Period size: 83 Copynumber: 6.2 Consensus size: 82
574072 TTTACTATGA
* * * * *
574082 GCAAATTCATCTTCCAAATTCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATAACTCAAAG
1 GCAAATTCATCTTCTAAATTCAATGATT-G--TTCT--GTCCA-ACCAGATCAGATAACTCAAAG
574147 AACACTTCCAGAAGATGCTATTG
60 AACACTTCCAGAAGATGCTATTG
* * *
574170 GCAAATTCATCTTCTAAACTCAATGATTGTTCTATCCAACCAGATTAGATAACTCAAAGAACACT
1 GCAAATTCATCTTCTAAATTCAATGATTGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACT
574235 TCCAGAAGATGCTATTG
66 TCCAGAAGATGCTATTG
* * *
574252 GCAAATTCATCTTCTAAACTCAATGCTTGATTCTGTCCAATCAGATCAGATAACTCAAAGAACAC
1 GCAAATTCATCTTCTAAATTCAATGATTG-TTCTGTCCAACCAGATCAGATAACTCAAAGAACAC
574317 TTCCAGAAGATGCTA-TG
65 TTCCAGAAGATGCTATTG
* ** * *
574334 AGCACATTCATCTTCCCAATTCAATGATTGGTTCTG-CTAAACCAGGTCAGATAACTCAAAGAAC
1 -GCAAATTCATCTTCTAAATTCAATGATT-GTTCTGTC-CAACCAGATCAGATAACTCAAAGAAC
*
574398 ACTTCCAGAAGATGCTATTA
63 ACTTCCAGAAGATGCTATTG
* *
574418 ACAAATTCATCTTCTAAATTCAATGATTGGTTCTGTCCAACCAGATCAAATAACTCAAAGAACAC
1 GCAAATTCATCTTCTAAATTCAATGATT-GTTCTGTCCAACCAGATCAGATAACTCAAAGAACAC
*
574483 TTCCATAAGATGCTATTG
65 TTCCAGAAGATGCTATTG
574501 GCAAATTCATCTTCTAAATTCAATGATTGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACT
1 GCAAATTCATCTTCTAAATTCAATGATTGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACT
574566 TCCAGAAGATGCTATTG
66 TCCAGAAGATGCTATTG
*
574583 GCAAATTGATCTT
1 GCAAATTCATCTT
574596 TTGTTTCCCA
Statistics
Matches: 386, Mismatches: 34, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
82 136 0.35
83 217 0.56
84 3 0.01
85 3 0.01
87 1 0.00
88 26 0.07
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (82 bp):
GCAAATTCATCTTCTAAATTCAATGATTGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACT
TCCAGAAGATGCTATTG
Found at i:584516 original size:20 final size:21
Alignment explanation
Indices: 584483--584523 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
584473 TATTATATAT
584483 ATATTTATGAATAT-ATAAAA
1 ATATTTATGAATATAATAAAA
**
584503 ATATTTATTCATATAATAAAA
1 ATATTTATGAATATAATAAAA
584524 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
ATATTTATGAATATAATAAAA
Found at i:585825 original size:3 final size:3
Alignment explanation
Indices: 585817--585868 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
585807 TTAATATATT
* *
585817 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
585865 TAA T
1 TAA T
585869 GATATGGGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:589935 original size:39 final size:39
Alignment explanation
Indices: 589892--589973 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
589882 TTGAACCATG
589892 ATCTGCTGAATGTGTTTTCCTTGGATACTCTATGGCACA
1 ATCTGCTGAATGTGTTTTCCTTGGATACTCTATGGCACA
*
589931 ATCTGCTGAATGTGTTTTCCTTGGATACTCTATGGCCCA
1 ATCTGCTGAATGTGTTTTCCTTGGATACTCTATGGCACA
589970 ATCT
1 ATCT
589974 TCTTATAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (39 bp):
ATCTGCTGAATGTGTTTTCCTTGGATACTCTATGGCACA
Found at i:590208 original size:36 final size:36
Alignment explanation
Indices: 590168--590240 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
590158 AAAATGATGA
* *
590168 ATCAGGTGCAATACCGACATAACAACTTAATGATCC
1 ATCAGCTGCAATACCGACACAACAACTTAATGATCC
* * *
590204 ATCAGCTGCAGTACCGACCCAACAACTTGATGATCC
1 ATCAGCTGCAATACCGACACAACAACTTAATGATCC
590240 A
1 A
590241 CCTAATGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.36, C:0.29, G:0.15, T:0.21
Consensus pattern (36 bp):
ATCAGCTGCAATACCGACACAACAACTTAATGATCC
Found at i:607709 original size:21 final size:21
Alignment explanation
Indices: 607684--607723 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
607674 AAGACTTTAT
607684 TTTCAAAA-TACAAAAATGATA
1 TTTCAAAATTA-AAAAATGATA
607705 TTTCAAAATTAAAAAATGA
1 TTTCAAAATTAAAAAATGA
607724 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (21 bp):
TTTCAAAATTAAAAAATGATA
Found at i:611515 original size:22 final size:24
Alignment explanation
Indices: 611490--611533 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
611480 GGAGGAATCG
611490 ATACCCCC-TTGAA-GGGAACCTA
1 ATACCCCCTTTGAAGGGGAACCTA
611512 ATACCCCCTTTGAAGGGGAACC
1 ATACCCCCTTTGAAGGGGAACC
611534 GATTCCCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 5 0.25
24 7 0.35
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (24 bp):
ATACCCCCTTTGAAGGGGAACCTA
Found at i:611541 original size:23 final size:22
Alignment explanation
Indices: 611483--611562 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 22
611473 TGGTGTAGGA
*
611483 GGAATCGATACCCCC-TTGAAG
1 GGAACCGATACCCCCTTTGAAG
*
611504 GGAACCTAATACCCCCTTTGAAGG
1 GGAACC-GATACCCCCTTTGAA-G
* *
611528 GGAACCGATTCCCCC--TGGAG
1 GGAACCGATACCCCCTTTGAAG
*
611548 GGAATCGATACCCCC
1 GGAACCGATACCCCC
611563 CACGGGGTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
20 14 0.29
21 8 0.16
22 8 0.16
23 12 0.24
24 7 0.14
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (22 bp):
GGAACCGATACCCCCTTTGAAG
Found at i:616103 original size:16 final size:16
Alignment explanation
Indices: 616082--616116 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
616072 AAAATATTCA
*
616082 AAAAAAAACTAAATAT
1 AAAAAAAACTAAAAAT
*
616098 AAAAAATACTAAAAAT
1 AAAAAAAACTAAAAAT
616114 AAA
1 AAA
616117 CATTAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAAAAACTAAAAAT
Found at i:620368 original size:21 final size:19
Alignment explanation
Indices: 620339--620396 Score: 82
Period size: 21 Copynumber: 3.0 Consensus size: 19
620329 TAATTTAATG
620339 AAAAAGATATCAATTGTTA
1 AAAAAGATATCAATTGTTA
620358 ACAAAAGGATATCAATTGTT-
1 A-AAAA-GATATCAATTGTTA
*
620378 AAAAAGATACCAATTGTTA
1 AAAAAGATATCAATTGTTA
620397 CCAATTGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 12 0.34
19 5 0.14
20 5 0.14
21 13 0.37
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (19 bp):
AAAAAGATATCAATTGTTA
Found at i:620386 original size:18 final size:18
Alignment explanation
Indices: 620339--620396 Score: 80
Period size: 18 Copynumber: 3.1 Consensus size: 18
620329 TAATTTAATG
620339 AAAAAGATATCAATTGTT
1 AAAAAGATATCAATTGTT
620357 AACAAAAGGATATCAATTGTT
1 -A-AAAA-GATATCAATTGTT
*
620378 AAAAAGATACCAATTGTT
1 AAAAAGATATCAATTGTT
620396 A
1 A
620397 CCAATTGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 13 0.36
19 5 0.14
20 5 0.14
21 13 0.36
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (18 bp):
AAAAAGATATCAATTGTT
Found at i:620644 original size:21 final size:19
Alignment explanation
Indices: 620620--620677 Score: 82
Period size: 21 Copynumber: 3.0 Consensus size: 19
620610 ATGTTTAATG
620620 AAAAAGATATCAATTGTTA
1 AAAAAGATATCAATTGTTA
620639 ACAAAAGGATATCAATTGTT-
1 A-AAAA-GATATCAATTGTTA
*
620659 AAAAAGATACCAATTGTTA
1 AAAAAGATATCAATTGTTA
620678 CCAATTGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 12 0.34
19 5 0.14
20 5 0.14
21 13 0.37
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (19 bp):
AAAAAGATATCAATTGTTA
Found at i:620667 original size:18 final size:18
Alignment explanation
Indices: 620620--620677 Score: 80
Period size: 18 Copynumber: 3.1 Consensus size: 18
620610 ATGTTTAATG
620620 AAAAAGATATCAATTGTT
1 AAAAAGATATCAATTGTT
620638 AACAAAAGGATATCAATTGTT
1 -A-AAAA-GATATCAATTGTT
*
620659 AAAAAGATACCAATTGTT
1 AAAAAGATATCAATTGTT
620677 A
1 A
620678 CCAATTGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 13 0.36
19 5 0.14
20 5 0.14
21 13 0.36
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (18 bp):
AAAAAGATATCAATTGTT
Found at i:621562 original size:23 final size:23
Alignment explanation
Indices: 621532--621597 Score: 123
Period size: 23 Copynumber: 2.9 Consensus size: 23
621522 TTATTTGGAT
*
621532 CCTTGAACATTAGTTTCAATGCC
1 CCTTGAACGTTAGTTTCAATGCC
621555 CCTTGAACGTTAGTTTCAATGCC
1 CCTTGAACGTTAGTTTCAATGCC
621578 CCTTGAACGTTAGTTTCAAT
1 CCTTGAACGTTAGTTTCAAT
621598 ACCCATTATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (23 bp):
CCTTGAACGTTAGTTTCAATGCC
Found at i:621864 original size:19 final size:20
Alignment explanation
Indices: 621819--621866 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
621809 TATTTATTCC
*
621819 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* * *
621839 CTCTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
621858 TTTTCAAAA
1 TTTTCAAAA
621867 GAAAATCACT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:623027 original size:20 final size:22
Alignment explanation
Indices: 623002--623041 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
622992 AGTCGTATAT
623002 AGCCGT-TGGGGA-TGTTTTGG
1 AGCCGTGTGGGGATTGTTTTGG
623022 AGCCGTGTGGGGATTGTTTT
1 AGCCGTGTGGGGATTGTTTT
623042 TCTACAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 6 0.33
22 6 0.33
ACGTcount: A:0.10, C:0.10, G:0.42, T:0.38
Consensus pattern (22 bp):
AGCCGTGTGGGGATTGTTTTGG
Found at i:623177 original size:21 final size:21
Alignment explanation
Indices: 623151--623210 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
623141 GTGAACAGTG
623151 AGTGCATCGATACACTATAGC
1 AGTGCATCGATACACTATAGC
* * *
623172 AGTGCATCGGTACACTGTAGT
1 AGTGCATCGATACACTATAGC
623193 AGTGCATC-AGTACACTAT
1 AGTGCATCGA-TACACTAT
623211 TTACATTCGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (21 bp):
AGTGCATCGATACACTATAGC
Found at i:628194 original size:14 final size:15
Alignment explanation
Indices: 628155--628200 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
628145 AATGCATTCC
*
628155 ATGAGCTAAGTATATG
1 ATGAGCTAA-TATATA
628171 ATGATG-TAATAT-TA
1 ATGA-GCTAATATATA
628185 ATGAGCTAATATATA
1 ATGAGCTAATATATA
628200 A
1 A
628201 GCCTTAGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
15 6 0.23
16 7 0.27
17 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.35
Consensus pattern (15 bp):
ATGAGCTAATATATA
Found at i:629197 original size:22 final size:22
Alignment explanation
Indices: 629169--629239 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
629159 TAAATCATGG
* * *
629169 AAGTGCCTTAGTACTAATACTA
1 AAGTGCCTTAGCAATAATACAA
*
629191 AAGTGCCTTTGCAATAATACAA
1 AAGTGCCTTAGCAATAATACAA
* * * *
629213 AAGTGCATTCGCACTGATACAA
1 AAGTGCCTTAGCAATAATACAA
629235 AAGTG
1 AAGTG
629240 TCATAGCATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (22 bp):
AAGTGCCTTAGCAATAATACAA
Found at i:629652 original size:13 final size:13
Alignment explanation
Indices: 629636--629692 Score: 60
Period size: 13 Copynumber: 4.4 Consensus size: 13
629626 TCTATGACGT
*
629636 GCATTGATGACAC
1 GCATTTATGACAC
*
629649 GCATTTATGACTC
1 GCATTTATGACAC
* * *
629662 ACATTTATAACGC
1 GCATTTATGACAC
*
629675 ACATTTATGACAC
1 GCATTTATGACAC
629688 GCATT
1 GCATT
629693 GAGCGTCATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (13 bp):
GCATTTATGACAC
Found at i:635148 original size:20 final size:20
Alignment explanation
Indices: 635119--635169 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
635109 AAGTGTCACC
* *
635119 AGTATTGATACTACCCCTTG
1 AGTATCGATACTACACCTTG
*
635139 AGTATCGATACTAGACCTTG
1 AGTATCGATACTACACCTTG
635159 AGTATCGATAC
1 AGTATCGATAC
635170 CCCTTGAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (20 bp):
AGTATCGATACTACACCTTG
Found at i:635176 original size:17 final size:17
Alignment explanation
Indices: 635130--635176 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 17
635120 GTATTGATAC
635130 TACCCCTTGAGTATCGA
1 TACCCCTTGAGTATCGA
*
635147 TACTAGACCTTGAGTATCGA
1 TAC---CCCTTGAGTATCGA
635167 TACCCCTTGA
1 TACCCCTTGA
635177 AGAAGTATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 9 0.36
20 16 0.64
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (17 bp):
TACCCCTTGAGTATCGA
Found at i:640784 original size:19 final size:19
Alignment explanation
Indices: 640762--640838 Score: 145
Period size: 19 Copynumber: 4.1 Consensus size: 19
640752 AGAAAAACTT
640762 AGAGTTCAAAGAAGATGAA
1 AGAGTTCAAAGAAGATGAA
*
640781 AGAGCTCAAAGAAGATGAA
1 AGAGTTCAAAGAAGATGAA
640800 AGAGTTCAAAGAAGATGAA
1 AGAGTTCAAAGAAGATGAA
640819 AGAGTTCAAAGAAGATGAA
1 AGAGTTCAAAGAAGATGAA
640838 A
1 A
640839 ATGGATAGGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.53, C:0.06, G:0.26, T:0.14
Consensus pattern (19 bp):
AGAGTTCAAAGAAGATGAA
Found at i:640792 original size:38 final size:38
Alignment explanation
Indices: 640750--640831 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 38
640740 AAAGAAAATT
**
640750 AAAGAAAAACTTAGAGTTCAAAGAAGATGAAAGAGCTC
1 AAAGAAAAACAAAGAGTTCAAAGAAGATGAAAGAGCTC
* ** *
640788 AAAGAAGATGAAAGAGTTCAAAGAAGATGAAAGAGTTC
1 AAAGAAAAACAAAGAGTTCAAAGAAGATGAAAGAGCTC
640826 AAAGAA
1 AAAGAA
640832 GATGAAAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.07, G:0.23, T:0.15
Consensus pattern (38 bp):
AAAGAAAAACAAAGAGTTCAAAGAAGATGAAAGAGCTC
Found at i:640801 original size:10 final size:10
Alignment explanation
Indices: 640769--640838 Score: 65
Period size: 10 Copynumber: 7.3 Consensus size: 10
640759 CTTAGAGTTC
640769 AAAGAAGATG
1 AAAGAAGATG
* *
640779 AAAG-AGCTC
1 AAAGAAGATG
640788 AAAGAAGATG
1 AAAGAAGATG
* *
640798 AAAG-AGTTC
1 AAAGAAGATG
640807 AAAGAAGATG
1 AAAGAAGATG
* *
640817 AAAG-AGTTC
1 AAAGAAGATG
640826 AAAGAAGATG
1 AAAGAAGATG
640836 AAA
1 AAA
640839 ATGGATAGGA
Statistics
Matches: 45, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
9 21 0.47
10 24 0.53
ACGTcount: A:0.56, C:0.06, G:0.26, T:0.13
Consensus pattern (10 bp):
AAAGAAGATG
Found at i:641078 original size:17 final size:17
Alignment explanation
Indices: 641045--641098 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
641035 AAACAAAACA
641045 AAAAGATAAATATTAAAT
1 AAAAGATAAA-ATTAAAT
*
641063 AAAAGATTAAATTAAAT
1 AAAAGATAAAATTAAAT
* *
641080 ATAAGATAAAAATAAAT
1 AAAAGATAAAATTAAAT
641097 AA
1 AA
641099 GAATGCAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 22 0.71
18 9 0.29
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
AAAAGATAAAATTAAAT
Found at i:642397 original size:22 final size:22
Alignment explanation
Indices: 642366--642407 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
642356 CGACGTTACA
*
642366 TAGGGGGAATCGGTACCCTCTG
1 TAGGGCGAATCGGTACCCTCTG
642388 TAGGGCGAATCGGTACCCTC
1 TAGGGCGAATCGGTACCCTC
642408 CGAGTAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.21
Consensus pattern (22 bp):
TAGGGCGAATCGGTACCCTCTG
Found at i:648725 original size:20 final size:20
Alignment explanation
Indices: 648700--648737 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
648690 AAGACTATTT
648700 TCATTTTCAATTTTGAAATA
1 TCATTTTCAATTTTGAAATA
**
648720 TCATTTTGTATTTTGAAA
1 TCATTTTCAATTTTGAAA
648738 ATAAAGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.53
Consensus pattern (20 bp):
TCATTTTCAATTTTGAAATA
Found at i:650748 original size:23 final size:22
Alignment explanation
Indices: 650722--650767 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
650712 GAGCCAAAAC
650722 CATTCAGGGGGAATCGGTTCCCT
1 CATT-AGGGGGAATCGGTTCCCT
*
650745 CATTGGGGGGAATCGGTTCCCT
1 CATTAGGGGGAATCGGTTCCCT
650767 C
1 C
650768 TGGGCAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (22 bp):
CATTAGGGGGAATCGGTTCCCT
Found at i:652927 original size:21 final size:21
Alignment explanation
Indices: 652901--652954 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
652891 ACATAGAATT
652901 TGTCCCGAAGAACCACATATA
1 TGTCCCGAAGAACCACATATA
* *
652922 TGTCCCAAAGGACCACATATA
1 TGTCCCGAAGAACCACATATA
*
652943 TGTCCTGAAGAA
1 TGTCCCGAAGAA
652955 TCACTCCTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (21 bp):
TGTCCCGAAGAACCACATATA
Found at i:653058 original size:21 final size:21
Alignment explanation
Indices: 652964--653059 Score: 66
Period size: 21 Copynumber: 4.6 Consensus size: 21
652954 ATCACTCCTT
* *
652964 AAGGATCACATATATATTCCA
1 AAGGACCACATATATATCCCA
* * * *
652985 AAGGACCAAATATGTGTCCCG
1 AAGGACCACATATATATCCCA
* * * * *
653006 AAGAACCGCATACATGTTCCA
1 AAGGACCACATATATATCCCA
** *
653027 AAGGATTACATATATATCCCG
1 AAGGACCACATATATATCCCA
653048 AAGGACCACATA
1 AAGGACCACATA
653060 GAACCCTCGA
Statistics
Matches: 52, Mismatches: 23, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.22
Consensus pattern (21 bp):
AAGGACCACATATATATCCCA
Found at i:654408 original size:21 final size:21
Alignment explanation
Indices: 654384--654423 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
654374 TCTTTTCTTG
* *
654384 TTTCTTTAATCTTATATAAGC
1 TTTCCTTAAGCTTATATAAGC
654405 TTTCCTTAAGCTTATATAA
1 TTTCCTTAAGCTTATATAA
654424 CACTCAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.15, G:0.05, T:0.50
Consensus pattern (21 bp):
TTTCCTTAAGCTTATATAAGC
Found at i:658747 original size:43 final size:45
Alignment explanation
Indices: 658699--658863 Score: 227
Period size: 43 Copynumber: 3.8 Consensus size: 45
658689 GTAACCATGC
*
658699 AAATAAGC-TACGAGCTTATGGAAT-AATGGCAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
*
658742 AAATAAGCTTACGAGCTTAAAGG-ATAAATGGTAAG--TATTGGTA
1 AAATAAGCTTACGAGCTT-ATGGAATAAATGGTAAGTATATTGGTA
658785 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT-
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
* *
658829 AAATAAACTTACGAGCTTATAGG-ATAAATGATAAG
1 AAATAAGCTTACGAGCTTAT-GGAATAAATGGTAAG
658864 AAATTTTATA
Statistics
Matches: 110, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
42 3 0.03
43 46 0.42
44 41 0.37
45 20 0.18
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
Found at i:658805 original size:87 final size:86
Alignment explanation
Indices: 658699--658863 Score: 269
Period size: 87 Copynumber: 1.9 Consensus size: 86
658689 GTAACCATGC
*
658699 AAATAAGCTACGAGCTTATGGAAT-AATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTAAA
1 AAATAAGCTACGAGCTTATGGAATAAATGGCAAGTATATTGGT-AAATAAACTTACGAGCTTAAA
*
658763 GGATAAATGGTAAGTATTGGTA
65 GGATAAATGATAAGTATTGGTA
* *
658785 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTAAATAAACTTACGAGCTTATA
1 AAATAAGC-TACGAGCTTATGGAATAAATGGCAAGTATATTGGTAAATAAACTTACGAGCTTAAA
658850 GGATAAATGATAAG
65 GGATAAATGATAAG
658864 AAATTTTATA
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
86 8 0.11
87 48 0.66
88 17 0.23
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (86 bp):
AAATAAGCTACGAGCTTATGGAATAAATGGCAAGTATATTGGTAAATAAACTTACGAGCTTAAAG
GATAAATGATAAGTATTGGTA
Found at i:664548 original size:21 final size:22
Alignment explanation
Indices: 664522--664562 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
664512 CCTGGACAGG
*
664522 GAGTATCGGTAC-TCCTTTAAT
1 GAGTATCGATACTTCCTTTAAT
664543 GAGTATCGATACTTCCTTTA
1 GAGTATCGATACTTCCTTTA
664563 TATTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (22 bp):
GAGTATCGATACTTCCTTTAAT
Found at i:668557 original size:17 final size:17
Alignment explanation
Indices: 668522--668557 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
668512 ATCCTTGTTT
**
668522 AAATTTATAAGAACTGA
1 AAATTTATAAGAAAAGA
668539 AAATTTATAAGAAAAGA
1 AAATTTATAAGAAAAGA
668556 AA
1 AA
668558 TTCCTTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (17 bp):
AAATTTATAAGAAAAGA
Found at i:670418 original size:44 final size:44
Alignment explanation
Indices: 670346--670464 Score: 193
Period size: 44 Copynumber: 2.7 Consensus size: 44
670336 ATGTCCCGGC
* * * * *
670346 CCGTCCCCATTCCTAAAAGCGACAGAAATGCGATGTGTTTGGGG
1 CCGTGCCCATCCCTAAGAGAGACGGAAATGCGATGTGTTTGGGG
670390 CCGTGCCCATCCCTAAGAGAGACGGAAATGCGATGTGTTTGGGG
1 CCGTGCCCATCCCTAAGAGAGACGGAAATGCGATGTGTTTGGGG
670434 CCGTGCCCATCCCTAAGAGAGACGGAAATGC
1 CCGTGCCCATCCCTAAGAGAGACGGAAATGC
670465 AATCCAAGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.25, C:0.26, G:0.29, T:0.19
Consensus pattern (44 bp):
CCGTGCCCATCCCTAAGAGAGACGGAAATGCGATGTGTTTGGGG
Found at i:673374 original size:12 final size:12
Alignment explanation
Indices: 673357--673390 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
673347 TTTAAGGTTC
673357 AAGTTTGAGTTT
1 AAGTTTGAGTTT
673369 AAGTTTGAGTTT
1 AAGTTTGAGTTT
*
673381 AAGCTTGAGT
1 AAGTTTGAGT
673391 CTTTAATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (12 bp):
AAGTTTGAGTTT
Found at i:674097 original size:186 final size:183
Alignment explanation
Indices: 673879--674216 Score: 568
Period size: 186 Copynumber: 1.8 Consensus size: 183
673869 ATTATATATG
* *
673879 AGCCCAAACCATTTACAACTTAATTAATAATTTAAAATCCAATAACTTTTAAACCTAAATCAATA
1 AGCCCAAACCATTTAAAACTCAATTAATAATTTAAAATCCAATAACTTTTAAACCTAAATCAATA
*
673944 TTAATTAATTAAAAAAATTATATAAAATTTTTATTTTATAAATATATATTATTTAAATTAATTGT
66 TTAATTAATTAAAAAAATTATATAAAATTTTTATTTTATAAATATATATTATTTAAATTAATTAT
674009 AAACTGATTTTTTGAATTAAAAAATATTATATATATTATATATAACATATGAGCTC
131 AAA---ATTTTTTGAATTAAAAAATATTATATATATTATATATAACATATGAGCTC
* *
674065 AGCCCAAACCATTTAAAACTCAATTAATAATTTAAGATCTAATAACTTTTAAACCTAAATCAATA
1 AGCCCAAACCATTTAAAACTCAATTAATAATTTAAAATCCAATAACTTTTAAACCTAAATCAATA
* * * *
674130 TTATTTAATTAAAAAATTTATCTAAAATTTTTATTTTATAATTATATATTATTTAAATTAATTAT
66 TTAATTAATTAAAAAAATTATATAAAATTTTTATTTTATAAATATATATTATTTAAATTAATTAT
674195 AAAATTTTTTGAATTAAAAAAT
131 AAAATTTTTTGAATTAAAAAAT
674217 TATAATTTTT
Statistics
Matches: 143, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
183 19 0.13
186 124 0.87
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.42
Consensus pattern (183 bp):
AGCCCAAACCATTTAAAACTCAATTAATAATTTAAAATCCAATAACTTTTAAACCTAAATCAATA
TTAATTAATTAAAAAAATTATATAAAATTTTTATTTTATAAATATATATTATTTAAATTAATTAT
AAAATTTTTTGAATTAAAAAATATTATATATATTATATATAACATATGAGCTC
Found at i:674211 original size:21 final size:20
Alignment explanation
Indices: 674168--674211 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
674158 TTTTATTTTA
*
674168 TAATTATATATTATTTAAAT
1 TAATTATAAATTATTTAAAT
* *
674188 TAATTATAAAATTTTTTGAAT
1 TAATTAT-AAATTATTTAAAT
674209 TAA
1 TAA
674212 AAAATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TAATTATAAATTATTTAAAT
Found at i:676960 original size:906 final size:901
Alignment explanation
Indices: 675191--677000 Score: 3203
Period size: 906 Copynumber: 2.0 Consensus size: 901
675181 CCAAAATTAC
* *
675191 AACCCAAAAAACTGGGTGGAATGATTAAAAAACAGCATGTTTTGTTAGATGAGTGCTTGGCCACT
1 AACCCAAAAAACTGGGTGGAATGATTAAAAAAAAGCATGATTTGTTAGATGAGTGCTTGGCCACT
675256 TTCCAACGGAAGTAGGACATTCATGACCATTATTTTTATTTTATTCTTTTTTCACTAACTTAAGG
66 TTCCAACGGAAGTAGGACATTCATGACCATTATTTTTATTTTATTCTTTTTTCACTAACTTAAGG
* * *
675321 TGATTATAATATCCGTTTTAAATAATTTTAATTATTTAATAATAAATATTCAATCACTCTGGTTA
131 TGATTATAATATACGTTTTAAATAATTTTAATCATTTAATAATAAATATTCAATAACTCTGGTTA
675386 TAATTATTGGAATTTAAATTCAGAATATTTAAGAATAATAATAATCTCTTTAACTATTGAAGTAA
196 TAATTATTGGAATTTAAATTCAGAATATTTAAGAATAATAATAATCTCTTTAACTATTGAAGTAA
*
675451 TTTCATTCCTACTATGTTATTCTTATATAGCAACACAAATTATCATTTTATTAATTAAAAATCAT
261 TTTCATTCATACTATGTTATTCTTATATAGCAACACAAATTATCATTTTATTAATTAAAAATCAT
675516 TAAAAGTATTATTACAGTATTAATAACAAAAGAAAAAAATTACGTGAAAATTATATATAAAATGT
326 TAAAAGTATTATTACAGTATTAATAACAAAAGAAAAAAATTACGTGAAAATTATATATAAAATGT
*
675581 TGGTATTGTAATTAATTTTTTTGGATAAACTACATAATTGACCACTCAACTATAGGGCTAATCTC
391 TGGTATTGTAATTAATTTTTTTGGATAAACTACATAATTAACCACTCAACTATAGGGCTAATCTC
*
675646 AAAATGACCACCATTTTTAAATTTACGTCAATATGATCATTGAACTATTTAAATGGTTTCAATAA
456 AAAATGACCACCATTTTTAAATTTACGTCAATATGATCATTGAACTATTTAAATGGTTTCAACAA
* * *
675711 AACCACCTGTCATTAACATTTAACGGAGGTGTTTACGTGGCAATTAACAAAATTTATATAATTAG
521 AACCACATGCCATTAACATTTAACGGAGGTGTTTACGTGGCAATTAACAAAATTGATATAATTAG
* *
675776 GACATGGATCCTTGTAAAGTTACGTATTCGTGGCACTGTCACCCTACTTTGTTTTCTTCCATTTT
586 GACATGAATCCTTGTAAAGTTACGTATTCGCGGCACTGTCACCCTACTTTGTTTTCTTCCATTTT
* * * *
675841 GGTCACTACTAGTGTATGATTTGTTTCCTTCGATTTTCATTTAATGCAATTTAATCTCGATTTTG
651 GGTCACTACTAGTATATGATTTGTTTCCTTCAATTCTCATTTAATGCAATTTAATCTCGATTCTG
675906 TTTTTAATTTGTCTAATGTCTTAATTCCAGCATTAACTTTAAAATCTTTTATTCTAGTCATGTAC
716 TTTTTAATTTGTCTAATGTCTTAATTCCAGCATTAACTTTAAAATCTTTTATTCTAGTCATGTAC
*
675971 TAAATTTATATATTAAATCCCCTAGGTTTTAGAATTAATCGTTGAGCCAATTCTCACACTTGTTA
781 TAAATTTATATATTAAATCCCCTAGATTTTAGAATTAATCGTTGAGCCAATTCTCACACTTGTTA
* *
676036 TCAAGATAATACAAATATAACTTGTTTAGGTTTAGACAGAAAAATAAATCTAAAAT
846 TCAAGATAATACAAATATAACTTGTTCAAGTTTAGACAGAAAAATAAATCTAAAAT
*
676092 AACCC-AAAAATTGGGTGGAATGA-TAAAAAAAAGCATGATTTGTTAGATGAGTGCTTGGCCACT
1 AACCCAAAAAACTGGGTGGAATGATTAAAAAAAAGCATGATTTGTTAGATGAGTGCTTGGCCACT
*
676155 TTCCAACGGAAGTAGGACATTCATGACCATTATTTTTATTTTATTTTTTTTTCACTAACTTAAGG
66 TTCCAACGGAAGTAGGACATTCATGACCATTATTTTTATTTTATTCTTTTTTCACTAACTTAAGG
*
676220 TGATTATAATATATGTTTTAAATAATTTTAATCATTTAATAATAAATATTCAATAACTCTGGTTA
131 TGATTATAATATACGTTTTAAATAATTTTAATCATTTAATAATAAATATTCAATAACTCTGGTTA
* * *
676285 TAATTATTGGTATTTAAATTCGGAATATTTAAGAATAATAATAATTTCTTTAACTATTGAAGTAA
196 TAATTATTGGAATTTAAATTCAGAATATTTAAGAATAATAATAATCTCTTTAACTATTGAAGTAA
676350 TTTCATTCATACTATGTTATTCTTATATAGCAACACAAATTATCATTTTATTAATTAAAAATCAT
261 TTTCATTCATACTATGTTATTCTTATATAGCAACACAAATTATCATTTTATTAATTAAAAATCAT
* *
676415 TAAAATTATTATTAGAGTATTAATAACAAAAGAAAAAAATTACGTGAAAATTATATATATATATA
326 TAAAAGTATTATTACAGTATTAATAACAAAAGAAAAAAATTACGTG-AAA--AT-TATATATA-A
*
676480 TAATGTTGGTATTGTAATTAATTTTTTTTGGATAAACTACATAGTTAACCACTCAACTATAGGGC
386 -AATGTTGGTATTGTAATTAA-TTTTTTTGGATAAACTACATAATTAACCACTCAACTATAGGGC
*
676545 TAATCTCAAAATGACCACCATTTTTAAATTTGCGTCAATATGATCATTGAACTATTTAAATGGTT
449 TAATCTCAAAATGACCACCATTTTTAAATTTACGTCAATATGATCATTGAACTATTTAAATGGTT
* *
676610 TCAACAAAGCCATATGCCATTAACATTTAACGGAGGTGTTTACGTGGCAATTAACAAAATTGATA
514 TCAACAAAACCACATGCCATTAACATTTAACGGAGGTGTTTACGTGGCAATTAACAAAATTGATA
* *
676675 TAATTAGGACGTGAATCCTTGTAAAGTTACGTATTCGCGGCATTGTCACCCTACTTTGTTTTCTT
579 TAATTAGGACATGAATCCTTGTAAAGTTACGTATTCGCGGCACTGTCACCCTACTTTGTTTTCTT
676740 CCATTTTGGTCACTACTAGTATATGATTTGTTTCCTTCAATTCTCATTTAATGCTAA-TTAATCT
644 CCATTTTGGTCACTACTAGTATATGATTTGTTTCCTTCAATTCTCATTTAATGC-AATTTAATCT
**
676804 CGATTCTGTTTTTAATTTGTCTAATGTCTTAATTTTAGCATTAACTTTAAAATCTTTTATTCTAG
708 CGATTCTGTTTTTAATTTGTCTAATGTCTTAATTCCAGCATTAACTTTAAAATCTTTTATTCTAG
676869 TCATGTACTAAATTTATATATTAAATCCCCTAGATTTTAGAATTAATCGTTGAGCCAATTCTCAC
773 TCATGTACTAAATTTATATATTAAATCCCCTAGATTTTAGAATTAATCGTTGAGCCAATTCTCAC
676934 ACTTGTTATCAAGATAATACAAATATAACTTGTTCAAGTTTAGACAGAAAAATAAATCTAAAAT
838 ACTTGTTATCAAGATAATACAAATATAACTTGTTCAAGTTTAGACAGAAAAATAAATCTAAAAT
676998 AAC
1 AAC
677001 TTAATTGCAT
Statistics
Matches: 865, Mismatches: 36, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
899 333 0.38
900 20 0.02
901 5 0.01
902 2 0.00
903 8 0.01
904 1 0.00
905 20 0.02
906 474 0.55
907 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (901 bp):
AACCCAAAAAACTGGGTGGAATGATTAAAAAAAAGCATGATTTGTTAGATGAGTGCTTGGCCACT
TTCCAACGGAAGTAGGACATTCATGACCATTATTTTTATTTTATTCTTTTTTCACTAACTTAAGG
TGATTATAATATACGTTTTAAATAATTTTAATCATTTAATAATAAATATTCAATAACTCTGGTTA
TAATTATTGGAATTTAAATTCAGAATATTTAAGAATAATAATAATCTCTTTAACTATTGAAGTAA
TTTCATTCATACTATGTTATTCTTATATAGCAACACAAATTATCATTTTATTAATTAAAAATCAT
TAAAAGTATTATTACAGTATTAATAACAAAAGAAAAAAATTACGTGAAAATTATATATAAAATGT
TGGTATTGTAATTAATTTTTTTGGATAAACTACATAATTAACCACTCAACTATAGGGCTAATCTC
AAAATGACCACCATTTTTAAATTTACGTCAATATGATCATTGAACTATTTAAATGGTTTCAACAA
AACCACATGCCATTAACATTTAACGGAGGTGTTTACGTGGCAATTAACAAAATTGATATAATTAG
GACATGAATCCTTGTAAAGTTACGTATTCGCGGCACTGTCACCCTACTTTGTTTTCTTCCATTTT
GGTCACTACTAGTATATGATTTGTTTCCTTCAATTCTCATTTAATGCAATTTAATCTCGATTCTG
TTTTTAATTTGTCTAATGTCTTAATTCCAGCATTAACTTTAAAATCTTTTATTCTAGTCATGTAC
TAAATTTATATATTAAATCCCCTAGATTTTAGAATTAATCGTTGAGCCAATTCTCACACTTGTTA
TCAAGATAATACAAATATAACTTGTTCAAGTTTAGACAGAAAAATAAATCTAAAAT
Found at i:677412 original size:2 final size:2
Alignment explanation
Indices: 677405--677468 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
677395 TAATGATTTC
677405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
677447 AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
677469 AAAAATAAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 60 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:696130 original size:2 final size:2
Alignment explanation
Indices: 696123--696162 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
696113 CATCACTTTC
696123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
696163 TTTCTTTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:697947 original size:2 final size:2
Alignment explanation
Indices: 697940--697971 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
697930 TATAAATTTA
697940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
697972 TAAATTCATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:699415 original size:17 final size:17
Alignment explanation
Indices: 699372--699443 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
699362 ATTTATGCAT
699372 CTAGTTCATTTAA-TAAA
1 CTAGTTCA-TTAATTAAA
* *
699389 GTTAGCTCATTAATTAAA
1 -CTAGTTCATTAATTAAA
* *
699407 CTAGTTCATTCATCAAA
1 CTAGTTCATTAATTAAA
*
699424 CTAGTTCATTTATTAAA
1 CTAGTTCATTAATTAAA
699441 CTA
1 CTA
699444 ATTTTTAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
17 35 0.78
18 10 0.22
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (17 bp):
CTAGTTCATTAATTAAA
Found at i:703344 original size:17 final size:17
Alignment explanation
Indices: 703266--703348 Score: 53
Period size: 17 Copynumber: 4.9 Consensus size: 17
703256 ACATTTAAAT
*
703266 CATCTAGTTCATTTAGG
1 CATCTAGTTCATTTATG
* ** *
703283 GAAGTTGTTCATTTATG
1 CATCTAGTTCATTTATG
*
703300 CATTTAGATT-ATTTA-G
1 CATCTAG-TTCATTTATG
* * *
703316 TAAGCTACTTCATTTATG
1 -CATCTAGTTCATTTATG
703334 CATCTAGTTCATTTA
1 CATCTAGTTCATTTA
703349 ATAAAGTTAG
Statistics
Matches: 46, Mismatches: 16, Indels: 8
0.66 0.23 0.11
Matches are distributed among these distances:
16 3 0.07
17 40 0.87
18 3 0.07
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (17 bp):
CATCTAGTTCATTTATG
Found at i:703348 original size:34 final size:34
Alignment explanation
Indices: 703266--703348 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
703256 ACATTTAAAT
**
703266 CATCTAGTTCATTTAGGGAAGTTGTTCATTTATG
1 CATCTAGTTCATTTAGGGAAGTACTTCATTTATG
* *
703300 CATTTAGATT-ATTTA-GTAAGCTACTTCATTTATG
1 CATCTAG-TTCATTTAGGGAAG-TACTTCATTTATG
703334 CATCTAGTTCATTTA
1 CATCTAGTTCATTTA
703349 ATAAAGTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
33 6 0.15
34 33 0.80
35 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (34 bp):
CATCTAGTTCATTTAGGGAAGTACTTCATTTATG
Found at i:703391 original size:17 final size:17
Alignment explanation
Indices: 703369--703408 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
703359 CTCTTTAATT
703369 AAACTAGTTCATTCATC
1 AAACTAGTTCATTCATC
* *
703386 AAACTAGTTCATTTATT
1 AAACTAGTTCATTCATC
703403 AAACTA
1 AAACTA
703409 ACTTTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (17 bp):
AAACTAGTTCATTCATC
Found at i:707452 original size:34 final size:34
Alignment explanation
Indices: 707361--707452 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
707351 GCACACATTA
* *
707361 CATTTAAATCATCTAGTTCATTTAGGGAAGATGTT
1 CATTTATA-CATCTAGTTCATTTAGGGAAGATCTT
* * *
707396 CATTTATACATTTAGATT-ATTTA-GTAAGCTACTT
1 CATTTATACATCTAG-TTCATTTAGGGAAGAT-CTT
*
707430 CATTTATGCATCTAGTTCATTTA
1 CATTTATACATCTAGTTCATTTA
707453 ATAAAGTTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
33 7 0.15
34 31 0.66
35 9 0.19
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (34 bp):
CATTTATACATCTAGTTCATTTAGGGAAGATCTT
Found at i:707484 original size:17 final size:17
Alignment explanation
Indices: 707441--707512 Score: 65
Period size: 17 Copynumber: 4.2 Consensus size: 17
707431 ATTTATGCAT
707441 CTAGTTCATTTAA-TAAA
1 CTAGTTCA-TTAATTAAA
* *
707458 GTTAGCTCATTAATTAAA
1 -CTAGTTCATTAATTAAA
* *
707476 CTAGTTCATTTATCAAA
1 CTAGTTCATTAATTAAA
* *
707493 CTAATTCATTTATTAAA
1 CTAGTTCATTAATTAAA
707510 CTA
1 CTA
707513 ATTTTTAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
17 35 0.78
18 10 0.22
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.42
Consensus pattern (17 bp):
CTAGTTCATTAATTAAA
Found at i:707513 original size:17 final size:17
Alignment explanation
Indices: 707464--707515 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
707454 TAAAGTTAGC
* *
707464 TCATTAATTAAACTAGT
1 TCATTTATTAAACTAAT
*
707481 TCATTTATCAAACTAAT
1 TCATTTATTAAACTAAT
707498 TCATTTATTAAACTAAT
1 TCATTTATTAAACTAAT
707515 T
1 T
707516 TTTAATTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.44
Consensus pattern (17 bp):
TCATTTATTAAACTAAT
Found at i:711005 original size:2 final size:2
Alignment explanation
Indices: 710998--711029 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
710988 TCAAAGTTAA
710998 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
711030 TAATTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:713023 original size:27 final size:27
Alignment explanation
Indices: 712985--713038 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
712975 AGAATGAACA
712985 CTCTACACCCTTACAAACATCATGCTT
1 CTCTACACCCTTACAAACATCATGCTT
713012 CTCTACACCCTTACAAACATCATGCTT
1 CTCTACACCCTTACAAACATCATGCTT
713039 GAAATCGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.37, G:0.04, T:0.30
Consensus pattern (27 bp):
CTCTACACCCTTACAAACATCATGCTT
Found at i:714205 original size:2 final size:2
Alignment explanation
Indices: 714198--714238 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
714188 TCTAGGTATG
714198 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
714239 TTATGTACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:718534 original size:19 final size:20
Alignment explanation
Indices: 718489--718538 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
718479 TTGTGCCAAC
* *
718489 AGTATCGATACTGACACTTG
1 AGTATCGATACTCACACCTG
*
718509 GGTATCGATACTCAC-CCTG
1 AGTATCGATACTCACACCTG
718528 AGTATCGATAC
1 AGTATCGATAC
718539 CAAAAATAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (20 bp):
AGTATCGATACTCACACCTG
Found at i:720399 original size:37 final size:37
Alignment explanation
Indices: 720358--720429 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
720348 ACAACTCTTT
* *
720358 GTTTTACTTTGAATATAGCTTAAACAATGTCCAGAGA
1 GTTTTACTCTGAATAGAGCTTAAACAATGTCCAGAGA
720395 GTTTTACTCTGAATAGAGCTTAAACAATGTCCAGA
1 GTTTTACTCTGAATAGAGCTTAAACAATGTCCAGA
720430 TACATCCTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (37 bp):
GTTTTACTCTGAATAGAGCTTAAACAATGTCCAGAGA
Found at i:722914 original size:39 final size:38
Alignment explanation
Indices: 722871--722949 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
722861 TTGTTAAATT
* *
722871 TTTTTAATTTACTTAAAGATATCATACAGTCGTGGAGTC
1 TTTTTAATTT-CCTAAAGATACCATACAGTCGTGGAGTC
* * * *
722910 TTTTTTATTTCCTGAAGATGCCATGCAGTCGTGGAGTC
1 TTTTTAATTTCCTAAAGATACCATACAGTCGTGGAGTC
722948 TT
1 TT
722950 CATATTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 25 0.74
39 9 0.26
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (38 bp):
TTTTTAATTTCCTAAAGATACCATACAGTCGTGGAGTC
Found at i:733641 original size:35 final size:35
Alignment explanation
Indices: 733592--733659 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
733582 TGGACTAGTA
* * * *
733592 GTACCGATATTGTTCTTACAGTATCGATACCAATT
1 GTACCAATACTGTTCATACAGTACCGATACCAATT
**
733627 GTACCAATACTGTTCATATGGTACCGATACCAA
1 GTACCAATACTGTTCATACAGTACCGATACCAA
733660 AGGTAAGGGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (35 bp):
GTACCAATACTGTTCATACAGTACCGATACCAATT
Found at i:735572 original size:43 final size:44
Alignment explanation
Indices: 735385--735660 Score: 210
Period size: 43 Copynumber: 6.4 Consensus size: 44
735375 AAAAAATGTT
* * * * *
735385 GCAATAGGTATTGATATTTAGCGGCATTTGTGT-GACAAACACC
1 GCAATAGGTGTTGATGTTTAGCGGCATTTTTCTCGACAAACGCC
* * * * *
735428 GTAATAGGTGTTGATATTTAGCGGCATTTGTCAT--AAAAACACC
1 GCAATAGGTGTTGATGTTTAGCGGCATTTTTC-TCGACAAACGCC
* * * *
735471 ACAATAGGTGTTGATATTTAGTGGCATTTTT-TAGACAAACGCC
1 GCAATAGGTGTTGATGTTTAGCGGCATTTTTCTCGACAAACGCC
* *
735514 GCAATAGGT-TATGATGTTTAGCGGCGTTTTTCTCTA-AAACGCC
1 GCAATAGGTGT-TGATGTTTAGCGGCATTTTTCTCGACAAACGCC
* * ** *
735557 GCAATAGGTGTTGATGTTTTGCTGTGTTTTTCTC-ACAAACGTC
1 GCAATAGGTGTTGATGTTTAGCGGCATTTTTCTCGACAAACGCC
* ** * * * *
735600 GTAGCAGGGGTTGATGTTTTGCGGCA-TTTTC-CCACAAACCCC
1 GCAATAGGTGTTGATGTTTAGCGGCATTTTTCTCGACAAACGCC
*
735642 GCAGTAGGTGTTGATGTTT
1 GCAATAGGTGTTGATGTTT
735661 TTTTCTCACA
Statistics
Matches: 193, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.01
42 30 0.16
43 157 0.81
44 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (44 bp):
GCAATAGGTGTTGATGTTTAGCGGCATTTTTCTCGACAAACGCC
Found at i:735672 original size:35 final size:35
Alignment explanation
Indices: 735626--735696 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
735616 TTTTGCGGCA
*
735626 TTTTCCCACAAACCCCGCAGTAGGTGTTGATGTTT
1 TTTTCCCACAAACCCCGCAGTAGGTATTGATGTTT
* ***
735661 TTTTCTCACAAACGTTGCAGTAGGTATTGATGTTT
1 TTTTCCCACAAACCCCGCAGTAGGTATTGATGTTT
735696 T
1 T
735697 GCGGCATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (35 bp):
TTTTCCCACAAACCCCGCAGTAGGTATTGATGTTT
Found at i:736143 original size:21 final size:21
Alignment explanation
Indices: 736119--736168 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
736109 CTGCTGATAT
* *
736119 GCTGCTTCTCTCTGTGCTGCC
1 GCTGCTTCTCTCTGTACTACC
736140 GCTGCTTCTCTCTGTACTACC
1 GCTGCTTCTCTCTGTACTACC
736161 GCTGCTTC
1 GCTGCTTC
736169 CACTGTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.38, G:0.20, T:0.38
Consensus pattern (21 bp):
GCTGCTTCTCTCTGTACTACC
Found at i:740867 original size:42 final size:41
Alignment explanation
Indices: 740804--740923 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 41
740794 TATATTACGA
*
740804 CGTTTGGCCTAAAACGCCGCTAAATGTCTACTCTATTGTGG
1 CGTTTGGACTAAAACGCCGCTAAATGTCTACTCTATTGTGG
** * * *
740845 CGTTTTTACTATAAACGTCGCT-ATTGAT-TAACCCT-TCTGTGG
1 CGTTTGGACTA-AAACGCCGCTAAATG-TCT-ACTCTAT-TGTGG
*
740887 CGTTTGGCCTAAAACGCCGCTAAATGTCTACTCTATT
1 CGTTTGGACTAAAACGCCGCTAAATGTCTACTCTATT
740924 ACGACGTTTC
Statistics
Matches: 60, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
41 28 0.47
42 32 0.53
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (41 bp):
CGTTTGGACTAAAACGCCGCTAAATGTCTACTCTATTGTGG
Found at i:740932 original size:41 final size:41
Alignment explanation
Indices: 740796--740932 Score: 109
Period size: 41 Copynumber: 3.3 Consensus size: 41
740786 AATGTCCATA
740796 TATTACGACGTTTGGCCTAAAACGCCGCTAAATGTCTACTC
1 TATTACGACGTTTGGCCTAAAACGCCGCTAAATGTCTACTC
** * *** * * *
740837 TATTGTGGCGTTTTTACTATAAACGTCGCT-ATTGAT-TAACCC
1 TATTACGACGTTTGGCCTA-AAACGCCGCTAAATG-TCT-ACTC
** *
740879 T-TCTGTGGCGTTTGGCCTAAAACGCCGCTAAATGTCTACTC
1 TAT-TACGACGTTTGGCCTAAAACGCCGCTAAATGTCTACTC
740920 TATTACGACGTTT
1 TATTACGACGTTT
740933 CTAATTATAA
Statistics
Matches: 71, Mismatches: 18, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
41 39 0.55
42 32 0.45
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (41 bp):
TATTACGACGTTTGGCCTAAAACGCCGCTAAATGTCTACTC
Found at i:741334 original size:190 final size:189
Alignment explanation
Indices: 740981--741419 Score: 490
Period size: 190 Copynumber: 2.3 Consensus size: 189
740971 CGTTTCTTGC
* * * *
740981 CAAAACGCCACTAATGTACGAATAATTTACGGTGTTTGTTACTAAAACGTCGCTATATGTGAACC
1 CAAAACGCCACTAATGTACGAATAATTTACGGCGTTTGTTACCAAAACGCCACTATATGTGAACC
* * *
741046 ATATTGCGGTGTTTTTGTCAAAACACCGTTAAAGTACTAATTTGTTTCGGCGTTTATTAAAAAAC
66 ATATTACGGTATTTTTGTCAAAACACCGTCAAAGTACTAATTTGTTTCGGCGTTTATTAAAAAAC
* * *
741111 ACCCCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATCTGCGGCATTTTTTGT
131 ACCCCTATATGTCTAAAGATAATGACATTTAAATAAAAAACATCTGCGACATTTTTTGA
** ** *
741170 CAAAACGCCACTAATGATTTGAATAATTTGTGGCGTTTGTTACCAAAATGCCACTATATGTGAAC
1 CAAAACGCCACTAATG-TACGAATAATTTACGGCGTTTGTTACCAAAACGCCACTATATGTGAAC
* * * *
741235 CCTCTTACGGTATTTTTGTCAAAACACCG-CAAGAGTACTAATCTT-TTAT-GGTGTTTGTTAAA
65 CATATTACGGTATTTTTGTCAAAACACCGTCAA-AGTACTAAT-TTGTT-TCGGCGTTTATTAAA
* ** ** * * * * *
741297 ATATGCCGTTATATGTCTAAAGTTAATGGCATTTAAATAAAAAATATTTGCGACGTTTTTTGA
127 AAACACCCCTATATGTCTAAAGATAATGACATTTAAATAAAAAACATCTGCGACATTTTTTGA
* * * * * *
741360 CAAAACGCCACTAAAGTACGAATTATTTGCGACGTTTGTGT-CAAAAACGCCGCTATATGT
1 CAAAACGCCACTAATGTACGAATAATTTACGGCGTTTGT-TACCAAAACGCCACTATATGT
741420 CTAAAGTTAG
Statistics
Matches: 207, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
189 52 0.25
190 152 0.73
191 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (189 bp):
CAAAACGCCACTAATGTACGAATAATTTACGGCGTTTGTTACCAAAACGCCACTATATGTGAACC
ATATTACGGTATTTTTGTCAAAACACCGTCAAAGTACTAATTTGTTTCGGCGTTTATTAAAAAAC
ACCCCTATATGTCTAAAGATAATGACATTTAAATAAAAAACATCTGCGACATTTTTTGA
Found at i:745426 original size:19 final size:19
Alignment explanation
Indices: 745402--745439 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
745392 CATCGAATGC
745402 AAGTAGTGCAACGATGCAT
1 AAGTAGTGCAACGATGCAT
*
745421 AAGTAGTGCATCGATGCAT
1 AAGTAGTGCAACGATGCAT
745440 CCCAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (19 bp):
AAGTAGTGCAACGATGCAT
Found at i:746362 original size:103 final size:103
Alignment explanation
Indices: 746236--746453 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
746226 GTCGAGGGTC
746236 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
746301 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAAGAATGA
746339 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
746404 TTGATCCCTAGTATATGTATATGATTCTTAAAGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAAGAATGA
746442 TATGTGGTCCTT
1 TATGTGGTCCTT
746454 ATGGACATTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAAGAATGA
Found at i:747749 original size:90 final size:89
Alignment explanation
Indices: 747633--747805 Score: 283
Period size: 90 Copynumber: 1.9 Consensus size: 89
747623 TAGTCCCAAA
* * *
747633 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCCAATATGTT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCCAATATGAT
*
747698 TAGGGTAACTTGGATATAAGAGGAT
65 TAGGATAACTTGGATATAAGAGGAT
*
747723 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGATT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCCAATATGATT
*
747788 AGGATAACTTGGCTATAA
66 AGGATAACTTGGATATAA
747806 AAGGGTGTGT
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 27 0.35
90 50 0.65
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (89 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCCAATATGATT
AGGATAACTTGGATATAAGAGGAT
Found at i:749670 original size:19 final size:19
Alignment explanation
Indices: 749646--749687 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
749636 AAGAAACATA
749646 TGGATGATATGCTAGATGT
1 TGGATGATATGCTAGATGT
*
749665 TGGATGATATGTTAGATGT
1 TGGATGATATGCTAGATGT
749684 TGGA
1 TGGA
749688 AATGCTTGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.38
Consensus pattern (19 bp):
TGGATGATATGCTAGATGT
Found at i:753530 original size:17 final size:17
Alignment explanation
Indices: 753508--753541 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
753498 TATTGATTGA
* *
753508 TGACATTGAGTTGTCAT
1 TGACATAGAGATGTCAT
753525 TGACATAGAGATGTCAT
1 TGACATAGAGATGTCAT
753542 AATTGATACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (17 bp):
TGACATAGAGATGTCAT
Found at i:754387 original size:90 final size:89
Alignment explanation
Indices: 754270--754434 Score: 249
Period size: 90 Copynumber: 1.8 Consensus size: 89
754260 ATAATCCCAA
* * * * *
754270 TATTTAATTTCAATTAATAAAATATAGATTTAATTAATTTGAGATAATAAAATCCCCAATATGAT
1 TATTAAATTCCAATTAATAAAATATAGATTTAACTAATTTAAAATAATAAAA-CCCCAATATGAT
754335 TAGGGTAACTTATATATAAGAGGAT
65 TAGGGTAACTTATATATAAGAGGAT
* * *
754360 TATTAAATTCCAATTAATTAAATATAGATTTAACTAATTTAAAATAATAAAACTCTAATATGATT
1 TATTAAATTCCAATTAATAAAATATAGATTTAACTAATTTAAAATAATAAAACCCCAATATGATT
754425 AGGGTAACTT
66 AGGGTAACTT
754435 GGCTATAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 21 0.31
90 46 0.69
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.38
Consensus pattern (89 bp):
TATTAAATTCCAATTAATAAAATATAGATTTAACTAATTTAAAATAATAAAACCCCAATATGATT
AGGGTAACTTATATATAAGAGGAT
Found at i:754987 original size:15 final size:15
Alignment explanation
Indices: 754967--755002 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
754957 ACGTTACTAA
754967 AATATATCTATATTT
1 AATATATCTATATTT
*
754982 AATATATGTATATTT
1 AATATATCTATATTT
*
754997 GATATA
1 AATATA
755003 CACATGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (15 bp):
AATATATCTATATTT
Found at i:758213 original size:21 final size:21
Alignment explanation
Indices: 758188--758236 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
758178 ATCTTTTTGA
758188 TGACCCTATTTTTGTTCTAGT
1 TGACCCTATTTTTGTTCTAGT
758209 TGACCCTATTTTTGTTCTAGT
1 TGACCCTATTTTTGTTCTAGT
758230 TGACCCT
1 TGACCCT
758237 GGTTCTACGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.49
Consensus pattern (21 bp):
TGACCCTATTTTTGTTCTAGT
Found at i:762745 original size:55 final size:55
Alignment explanation
Indices: 762647--762884 Score: 284
Period size: 55 Copynumber: 4.3 Consensus size: 55
762637 AATTGGTATA
* *
762647 TACAAGCATTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACCG
1 TACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACCG
* * * *
762702 TACAGGCACTATTTGTGCATATCCACGGAATTCATCATTAGTTGATGAATAACCG
1 TACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACCG
* * * *
762757 TAAAGACACTATGTGTGCAAATCCACGAAATTCATCATTAGTTGATGAATAATCG
1 TACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACCG
* * * *
762812 TACAAGCACGATGTGTGC-AACCCAC-AGAATTCATCAGGAGTTGATGAACT-ACCG
1 TACAGGCACTATGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAA-TAACCG
** *
762866 TGTAGGCACTACGTGTGCA
1 TACAGGCACTATGTGTGCA
762885 TATTAATAAA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 41 0.26
55 113 0.73
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (55 bp):
TACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAACCG
Found at i:766473 original size:20 final size:20
Alignment explanation
Indices: 766450--766487 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
766440 TATTGAACCT
766450 TTGGTATAGATACCCACTTG
1 TTGGTATAGATACCCACTTG
*
766470 TTGGTATCGATACCCACT
1 TTGGTATAGATACCCACT
766488 AGCTGATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (20 bp):
TTGGTATAGATACCCACTTG
Found at i:773454 original size:20 final size:22
Alignment explanation
Indices: 773429--773474 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
773419 GTATTATTGG
773429 TACTCTAG-ACTGA-GTATCGA
1 TACTCTAGTACTGAGGTATCGA
* *
773449 TACTCTGGTGCTGAGGTATCGA
1 TACTCTAGTACTGAGGTATCGA
773471 TACT
1 TACT
773475 AGCATGAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 11 0.50
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (22 bp):
TACTCTAGTACTGAGGTATCGA
Found at i:780515 original size:21 final size:21
Alignment explanation
Indices: 780468--780521 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
780458 GATGCTTGCT
780468 TGGTATCGATAC-CCTTACAA
1 TGGTATCGATACTCCTTACAA
780488 TGGTATCGATACTTCC-T-CAA
1 TGGTATCGATAC-TCCTTACAA
780508 TCGGTATCGATACT
1 T-GGTATCGATACT
780522 GATTAAATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 17 0.55
21 12 0.39
22 2 0.06
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (21 bp):
TGGTATCGATACTCCTTACAA
Found at i:783839 original size:21 final size:21
Alignment explanation
Indices: 783798--783837 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
783788 TACTGTAGGG
783798 GTAGTATTGATACTCTTCCCA
1 GTAGTATTGATACTCTTCCCA
783819 GTAGTATTGATACT-TTCCC
1 GTAGTATTGATACTCTTCCC
783838 CATCAATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (21 bp):
GTAGTATTGATACTCTTCCCA
Found at i:787318 original size:18 final size:19
Alignment explanation
Indices: 787290--787325 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
787280 AAATGAATAA
*
787290 ATATCAAATTAATTTTAAC
1 ATATCAAATTAAATTTAAC
787309 ATAT-AAATTAAATTTAA
1 ATATCAAATTAAATTTAA
787326 AAAGTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATCAAATTAAATTTAAC
Found at i:791451 original size:3 final size:3
Alignment explanation
Indices: 791434--791477 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
791424 GGGCCTGTAA
791434 AAT AAT AA- AATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
791478 ATAAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:791812 original size:102 final size:99
Alignment explanation
Indices: 791609--791825 Score: 246
Period size: 102 Copynumber: 2.2 Consensus size: 99
791599 ATTTGGAAAT
** *
791609 GTTGAACAAGTT-TT-TCTTTGGGATTAGTTCTTCTCATTATGAACTTTTCCATTGGGGATGACA
1 GTTGAACAAGTTCTTCTCTTTCAGATTAGTTCTTCTCATTATGAACTTTGCCATTGGGGATGACA
*
791672 ATTTATCTCCTTCTGTGATGTAATCTAGCAAAGA
66 ATCTATCTCCTTCTGTGATGTAATCTAGCAAAGA
* * **
791706 GTTGAACAAATTCTTCTCTTTCAGATTAGTTCTTCTCATTATGAACACTTCTGGCATTGTTGATG
1 GTTGAACAAGTTCTTCTCTTTCAGATTAGTTCTTCTCATTATG-A-ACTT-TGCCATTGGGGATG
* * *
791771 -CTGATCTATCTTCTTCTGTGATAG-AATCTTGCAAA-A
63 AC-AATCTATCTCCTTCTGTGAT-GTAATCTAGCAAAGA
791807 GGTTGAACAAGTTCTTCTC
1 -GTTGAACAAGTTCTTCTC
791826 ATTATGAACT
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
97 11 0.11
98 2 0.02
99 25 0.25
100 1 0.01
101 6 0.06
102 54 0.54
103 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (99 bp):
GTTGAACAAGTTCTTCTCTTTCAGATTAGTTCTTCTCATTATGAACTTTGCCATTGGGGATGACA
ATCTATCTCCTTCTGTGATGTAATCTAGCAAAGA
Found at i:792170 original size:124 final size:124
Alignment explanation
Indices: 791725--792358 Score: 881
Period size: 123 Copynumber: 5.2 Consensus size: 124
791715 ATTCTTCTCT
* ** * ** * *
791725 TTCAGATTAGTTCTTCTCATTATGAACACT-TCTGGCATTGT-TGATGCTGATCTATCTTCTTCT
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGT-ATGTTGATCTATCTCCTTCT
* * *
791788 GTGATAGAATCTTGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCC-TC
65 GTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
* * * *
791847 TTCAGATGAGTTATTCTCATTATGAACTTTCACTGGAAAAGTGTATGCTAATCTATCTCCTTCTG
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
791912 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TC
66 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
* *
791970 TTTAGATGAGTTCTTATCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
*
792035 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCAATATGAACTTCTTCTTCCTTC
66 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
*
792094 TTCATATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
*
792159 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTCTTCTTCCTTC
66 TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
* ***
792218 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG--AA----ATGTTG----ATC-CATTGAA
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
*
792272 TGAT-GAATTCAAGTG-AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
66 TGATAG-AGTC-A-TGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
792331 TTCAGATGAGTTCTTCTCATTATGAACT
1 TTCAGATGAGTTCTTCTCATTATGAACT
792359 CGACCTGGCA
Statistics
Matches: 475, Mismatches: 31, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
112 1 0.00
113 77 0.16
114 8 0.02
115 2 0.00
118 6 0.01
122 28 0.06
123 195 0.41
124 158 0.33
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.40
Consensus pattern (124 bp):
TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG
TGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTC
Found at i:792207 original size:247 final size:245
Alignment explanation
Indices: 791716--792358 Score: 893
Period size: 247 Copynumber: 2.6 Consensus size: 245
791706 GTTGAACAAA
* ** ** *
791716 TTCTT-CTCTTTCAGATTAGTTCTTCTCATTATGAACACT-TCTGGCATTGTTGATGCTGATCTA
1 TTCTTCCTCTTT-AGATGAGTTCTTCTCATTATGAACTTTCTCTGG-AAAGTT-ATGTTGATCTA
* * *
791779 TCTTCTTCTGTGATAGAATCTTGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTC
63 TCTCCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTC
*
791844 C-TCTTCAGATGAGTTATTCTCATTATGAACTTTCACTGGAAAAGTGTATGCTAATCTATCTCCT
128 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCACTGGAAAAGTGTATGCTAATCTATCTCCT
*
791908 TCTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTC
193 TCTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTC
*
791961 TTCTTCCTCTTTAGATGAGTTCTTATCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTAT
1 TTCTTCCTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGG-AAAGT-TATGTTGATCTAT
* *
792026 CTCCTTCTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCAATATGAACTTCTTCTTCC
64 CTCCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC
* * * *
792091 TTCTTCATATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTGTATGTTGATCTATCTCCTT
129 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCACTGGAAAAGTGTATGCTAATCTATCTCCTT
792156 CTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTC
194 CTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTC
*
792208 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG-AA---ATGTTG----ATC
1 TTCTTCC-TCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGTTATGTTGATCTATC
* ***
792265 -CATTGAATGAT-GAATTCAAGTG-AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
65 TCCTTCTGTGATAGAA-TC-A-TGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
792326 CCTTCTTCAGATGAGTTCTTCTCATTATGAACT
127 CCTTCTTCAGATGAGTTCTTCTCATTATGAACT
792359 CGACCTGGCA
Statistics
Matches: 362, Mismatches: 28, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
236 2 0.01
237 75 0.21
238 8 0.02
239 2 0.01
242 6 0.02
245 28 0.08
246 87 0.24
247 118 0.33
248 36 0.10
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (245 bp):
TTCTTCCTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGTTATGTTGATCTATCT
CCTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTT
CTTCAGATGAGTTCTTCTCATTATGAACTTTCACTGGAAAAGTGTATGCTAATCTATCTCCTTCT
GTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCACTATGAACTTC
Found at i:792302 original size:113 final size:113
Alignment explanation
Indices: 792049--792545 Score: 606
Period size: 113 Copynumber: 4.3 Consensus size: 113
792039 AGAGTCATGC
* *
792049 AAAAGGTTGAACAAGTTCTTCTCAATATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
** * * *** * *
792114 TATGAACT-TTCTCTGGAAAAGTGTATGTTGATCTATCTCCTTCTG-TGATAGAGTCATGC-
65 TATGAACTCGAC-CTGG--CA----ATGTTGATCCA--T-CGAATGATG--A-ATTCAAGCG
*
792173 AAAAGGTTGAACAAGTTCTTCTCACTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
** * * *
792238 TATGAACT-TTCTCTGGAAATGTTGATCCATTGAATGATGAATTCAAGTG
65 TATGAACTCGAC-CTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
792287 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
792352 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTTAAGCA
66 ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
* * * *
792400 AAAATTTGAACAAATTCTTCTAATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
792465 ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
792513 AAAAGTTGAACAAGTTCTTCTCATTATGAACTT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTT
792546 ACCTGGTAAT
Statistics
Matches: 341, Mismatches: 29, Indels: 17
0.88 0.07 0.04
Matches are distributed among these distances:
113 239 0.70
114 6 0.02
115 2 0.01
116 3 0.01
118 10 0.03
122 2 0.01
124 79 0.23
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
Found at i:792685 original size:76 final size:76
Alignment explanation
Indices: 792559--792789 Score: 390
Period size: 76 Copynumber: 3.0 Consensus size: 76
792549 TGGTAATGCT
* * * *
792559 GATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCTAAGGCTTTTTGGAAATATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
792624 TAGGACTTACA
66 TAGGACTTACA
792635 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
792700 TAGGACTTACA
66 TAGGACTTACA
* *
792711 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCAGGCACTA
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
* *
792776 CAGGGCTTACA
66 TAGGACTTACA
792787 GAT
1 GAT
792790 ATGGGAAATA
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 147 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (76 bp):
GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
TAGGACTTACA
Found at i:793069 original size:73 final size:73
Alignment explanation
Indices: 792949--793305 Score: 581
Period size: 73 Copynumber: 4.9 Consensus size: 73
792939 ATCTCGAAAT
* * *
792949 AACTGTCTTAAGCGAAACAAATATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGT
1 AACTGTCTCAAGCGAGACAAA-ATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGT
793014 TTCAAGTGA
65 TTCAAGTGA
* *
793023 AACTGTCTCAAGCGAGACAAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGCTAAAGTTCTGTT
1 AACTGTCTCAAGCGAGACAAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGTT
*
793088 TCGAGTGA
66 TCAAGTGA
* *
793096 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTT
1 AACTGTCTCAAGCGAGACAAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGTT
793161 TCAAGTGA
66 TCAAGTGA
*
793169 AACTGTCTCAAGCGAGACAAAATTT-TTTTGAAGAAAAACAATCTCAAGTGAGATAAAGTTCTGT
1 AACTGTCTCAAGCGAGACAAAATTTGTTTT-AAGAAAAACAATCTCAAGTGAGATAAATTTCTGT
*
793233 TTCGAGTGA
65 TTCAAGTGA
* *
793242 AACTGTCACAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGT
1 AACTGTCTCAAGCGAGACAAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGT
793306 GAAAACATCC
Statistics
Matches: 263, Mismatches: 18, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
72 4 0.02
73 236 0.90
74 23 0.09
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (73 bp):
AACTGTCTCAAGCGAGACAAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTCTGTT
TCAAGTGA
Found at i:793148 original size:146 final size:146
Alignment explanation
Indices: 792949--793301 Score: 645
Period size: 146 Copynumber: 2.4 Consensus size: 146
792939 ATCTCGAAAT
* *
792949 AACTGTCTTAAGCGAAACAAATATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGT
1 AACTGTCTCAAGCGAGACAAAT-TTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGT
*
793014 TTCAAGTGAAACTGTCTCAAGCGAGACAAAATTTGTTTT-AAGAAAAACAATCTCAAGTGAGCTA
65 TTCAAGTGAAACTGTCTCAAGCGAGACAAAATTT-TTTTGAAGAAAAACAATCTCAAGTGAGATA
793078 AAGTTCTGTTTCGAGTGA
129 AAGTTCTGTTTCGAGTGA
793096 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTT
793161 TCAAGTGAAACTGTCTCAAGCGAGACAAAATTTTTTTGAAGAAAAACAATCTCAAGTGAGATAAA
66 TCAAGTGAAACTGTCTCAAGCGAGACAAAATTTTTTTGAAGAAAAACAATCTCAAGTGAGATAAA
793226 GTTCTGTTTCGAGTGA
131 GTTCTGTTTCGAGTGA
*
793242 AACTGTCACAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTT
1 AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTT
793302 CTGTGAAAAC
Statistics
Matches: 201, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
145 4 0.02
146 177 0.88
147 20 0.10
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (146 bp):
AACTGTCTCAAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTT
TCAAGTGAAACTGTCTCAAGCGAGACAAAATTTTTTTGAAGAAAAACAATCTCAAGTGAGATAAA
GTTCTGTTTCGAGTGA
Found at i:793654 original size:165 final size:166
Alignment explanation
Indices: 793340--793667 Score: 516
Period size: 165 Copynumber: 2.0 Consensus size: 166
793330 TATGGATGTG
* * * * *
793340 GGAAATAGTTTACTAGGTAAGATACTATGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
1 GGAAATAGTTTACTAAGTAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
** * *
793405 AGAAAAGATTGAATGAGAAACTATGGAAAATCGTTTTCTCATTATTTTTCAAAATAACTTGTTAA
66 AGAAAAGATAAAATGAGAAACTATGGAAAACCGTTTTCTCATTATTTTTCAAAATAACATGTTAA
*
793470 TTGGGTAACATGCCCCAATCTCAAGATAATGCTGTT
131 TTGGGTAACATGACCCAATCTCAAGATAATGCTGTT
793506 GGAAATAGTTTACTAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
1 GGAAATAGTTTACTAAGT-AAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
* * *
793571 C-GAAAAGATAAAATGAGAAATTATGG-AAACCGTTTTCTCATTATTTTTCAAAATATCATGTTG
65 CAGAAAAGATAAAATGAGAAACTATGGAAAACCGTTTTCTCATTATTTTTCAAAATAACATGTTA
793634 ATTGGGTAACATGACCCAATCTCAAGATAATGCT
130 ATTGGGTAACATGACCCAATCTCAAGATAATGCT
793668 CATTCTTGTG
Statistics
Matches: 148, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
165 66 0.45
166 39 0.26
167 43 0.29
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (166 bp):
GGAAATAGTTTACTAAGTAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTTC
AGAAAAGATAAAATGAGAAACTATGGAAAACCGTTTTCTCATTATTTTTCAAAATAACATGTTAA
TTGGGTAACATGACCCAATCTCAAGATAATGCTGTT
Found at i:794095 original size:22 final size:22
Alignment explanation
Indices: 794070--794124 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
794060 AATAAAGCTT
*
794070 TCATCTTTGAAAAGAAAATCTA
1 TCATCTTTAAAAAGAAAATCTA
*
794092 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTAAAAAGAAAATCTA
794114 TCATCTTTAAA
1 TCATCTTTAAA
794125 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.35
Consensus pattern (22 bp):
TCATCTTTAAAAAGAAAATCTA
Found at i:796793 original size:114 final size:114
Alignment explanation
Indices: 796593--796809 Score: 353
Period size: 114 Copynumber: 1.9 Consensus size: 114
796583 GATCATGCAG
* * * * *
796593 TTCATCTTTTAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCATATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
796658 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTAATATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTAATATGAGCAAA
* * *
796707 TTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
796772 ACACTTCCAGAAGATGCTATTGGGTCTCTTTATTTCTA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTA
796810 CTACGAGAAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 94 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTAATATGAGCAAA
Found at i:799114 original size:20 final size:20
Alignment explanation
Indices: 799087--799129 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
799077 TGCCTTTTTG
*
799087 TTTTTTTTTATTTTTC-TTC
1 TTTTTTTTTATTCTTCTTTC
*
799106 TTTTATTTTTCTTCTTCTTTC
1 TTTT-TTTTTATTCTTCTTTC
799127 TTT
1 TTT
799130 GCTGGATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 10 0.50
21 6 0.30
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTTTTTTATTCTTCTTTC
Found at i:801078 original size:12 final size:12
Alignment explanation
Indices: 801063--801090 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
801053 CAAACATAAA
801063 AAATGCAAATGT
1 AAATGCAAATGT
801075 AAATGCAAATGT
1 AAATGCAAATGT
801087 AAAT
1 AAAT
801091 ATGTGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (12 bp):
AAATGCAAATGT
Found at i:801089 original size:27 final size:27
Alignment explanation
Indices: 801030--801089 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
801020 AAATGTAATT
801030 ATGT-AAAAATGAAAATGTAAATACAA
1 ATGTAAAAAATGAAAATGTAAATACAA
** * *
801056 ACATAAAAAATGCAAATGTAAATGCAA
1 ATGTAAAAAATGAAAATGTAAATACAA
801083 ATGTAAA
1 ATGTAAA
801090 TATGTGAATG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.60, C:0.07, G:0.12, T:0.22
Consensus pattern (27 bp):
ATGTAAAAAATGAAAATGTAAATACAA
Found at i:801188 original size:15 final size:15
Alignment explanation
Indices: 801149--801188 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
801139 ATAAAAGTAT
*
801149 AAATGCAAAAATAAA
1 AAATGCAAATATAAA
**
801164 AAATGCAAATATGCA
1 AAATGCAAATATAAA
801179 AAATGCAAAT
1 AAATGCAAAT
801189 GTATGTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.17
Consensus pattern (15 bp):
AAATGCAAATATAAA
Found at i:804377 original size:18 final size:17
Alignment explanation
Indices: 804354--804390 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
804344 TTTAGTCTCA
804354 GTTGTTGTTGATGTGTTC
1 GTTGTTGTTG-TGTGTTC
804372 GTTGTTGTTGTGTGTTC
1 GTTGTTGTTGTGTGTTC
804389 GT
1 GT
804391 CTCTCCCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.03, C:0.05, G:0.35, T:0.57
Consensus pattern (17 bp):
GTTGTTGTTGTGTGTTC
Found at i:804910 original size:3 final size:3
Alignment explanation
Indices: 804890--804943 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
804880 TTTGGGCCTG
*
804890 TAA T-A TAA TAA -AA TTAA TAA TAAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
804935 TAA TAA TAA
1 TAA TAA TAA
804944 AAAAACCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
2 4 0.09
3 36 0.80
4 5 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:804918 original size:19 final size:18
Alignment explanation
Indices: 804890--804937 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 18
804880 TTTGGGCCTG
804890 TAAT-ATAATAAAATTAA
1 TAATAATAATAAAATTAA
*
804907 TAATAAATAATAATATTAA
1 TAAT-AATAATAAAATTAA
804926 TAATAATAATAA
1 TAATAATAATAA
804938 TAATAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 16 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAATAATAATAAAATTAA
Found at i:806057 original size:36 final size:35
Alignment explanation
Indices: 805935--806078 Score: 105
Period size: 36 Copynumber: 4.0 Consensus size: 35
805925 TAGCATAATT
* **
805935 TTTGAAAAT-ATTTTTTGAAAA-ATATTATATATTTTT
1 TTTGAAAATGA-TTTTTGAAAATATA-TAT-TATATAG
* * *
805971 TTTAGAAAACGATTTTTGAAAACATATAATATACT-G
1 TTT-GAAAATGATTTTTGAAAATATATATTATA-TAG
* *
806007 TTTAAAAATCGATTTTTAAAAATATATATTATATAG
1 TTTGAAAAT-GATTTTTGAAAATATATATTATATAG
* *
806043 CTTTGAAAATGATTTTTGCATATATATATATATATA
1 -TTTGAAAATGATTTTTGAAAATATATAT-TATATA
806079 TATATATATA
Statistics
Matches: 87, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
35 5 0.06
36 46 0.53
37 32 0.37
38 4 0.05
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (35 bp):
TTTGAAAATGATTTTTGAAAATATATATTATATAG
Found at i:806069 original size:2 final size:2
Alignment explanation
Indices: 806062--806095 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
806052 TGATTTTTGC
806062 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
806096 GTTTGCAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:806089 original size:54 final size:52
Alignment explanation
Indices: 806028--806132 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 52
806018 ATTTTTAAAA
* *
806028 ATATATATTATATAGCTTTGAAAATGATTTTTGCATATATATATATATATATAT
1 ATATATATTATATAG-TTTGAAAATGATTTTTGAAAATATATATA-ATATATAT
*
806082 ATATATATTATATAGTTTGCAAATGATTTTTGAAAATATATATAATATATA
1 ATATATATTATATAGTTTGAAAATGATTTTTGAAAATATATATAATATATA
806133 GTTTTTGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
52 7 0.15
53 26 0.54
54 15 0.31
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.47
Consensus pattern (52 bp):
ATATATATTATATAGTTTGAAAATGATTTTTGAAAATATATATAATATATAT
Found at i:806160 original size:39 final size:37
Alignment explanation
Indices: 806078--806276 Score: 210
Period size: 37 Copynumber: 5.3 Consensus size: 37
806068 ATATATATAT
* **
806078 ATATATATATATTATATAG-TTTGCAAATGATTTTTGAA
1 ATATATATATAATATATAGTTTTG-AAAACA-TTTTGAA
806116 A-ATATATATAATATATAGTTTTTGAAAACATTTTGAA
1 ATATATATATAATATATAG-TTTTGAAAACATTTTGAA
806153 A-ATATATATAATATATAGTTTTTGAAAACATTTTGAAA
1 ATATATATATAATATATAG-TTTTGAAAACATTTTG-AA
* *
806191 ATATATATATAATATATAG-TTTCAAATCATTTTGAAA
1 ATATATATATAATATATAGTTTTGAAAACATTTTG-AA
* * * *
806228 ATATATATATATTATATAGGTTTTGGAAATATTTT-AT
1 ATATATATATAATATATA-GTTTTGAAAACATTTTGAA
806265 ATATATAATATA
1 ATATAT-ATATA
806277 TTATTATTAT
Statistics
Matches: 143, Mismatches: 11, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
37 98 0.69
38 14 0.10
39 31 0.22
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (37 bp):
ATATATATATAATATATAGTTTTGAAAACATTTTGAA
Done.