genome.fa.s813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000813.1 Hibiscus syriacus cultivar Beakdansim tig00001573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103875

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833--879	21	2.3	20	78	10	51	74	6	4	14	1.17
3246--3277	16	2.1	16	94	5	57	12	37	12	37	1.81
4454--4485	16	2.1	16	94	5	57	12	37	12	37	1.81
7184--7618	39	11.4	39	84	4	546	32	16	15	35	1.90
7196--7618	114	3.7	114	85	4	516	32	15	16	35	1.90
7196--7618	153	2.8	154	87	3	613	32	15	16	35	1.90
9004--9292	110	2.6	110	85	2	366	25	17	11	45	1.82
9409--9540	50	2.7	48	77	11	117	21	12	7	58	1.58
9572--9629	19	3.0	20	84	5	73	13	1	5	79	0.98
14474--14504	12	2.6	12	100	0	62	45	6	0	48	1.28
14522--14570	20	2.5	19	83	6	53	55	4	8	32	1.48
15593--15822	124	1.8	125	86	6	333	39	8	17	34	1.80
17083--17151	20	3.5	19	75	16	61	28	21	18	30	1.97
17185--17233	20	2.4	20	80	10	55	30	24	18	26	1.98
19277--19325	19	2.7	18	78	6	55	40	4	2	53	1.32
21791--21833	16	2.8	16	85	3	52	16	9	0	74	1.06
22491--22520	14	2.1	14	93	0	51	43	0	16	40	1.48
23060--23091	16	2.0	16	93	0	55	12	9	25	53	1.68
30125--30168	3	13.7	3	81	13	52	61	2	0	36	1.09
30125--30168	13	3.7	12	82	17	56	61	2	0	36	1.09
30139--30172	10	3.4	10	91	0	59	61	0	0	38	0.96
31800--31893	42	2.2	42	84	3	118	38	12	22	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31822--31893	20	3.5	20	71	17	58	40	12	22	25	1.89
32291--33301	81	12.5	81	91	0	1538	36	11	20	32	1.88
33241--33343	54	1.9	54	93	0	179	37	11	18	32	1.87
33160--33407	135	1.8	135	86	1	345	37	11	21	29	1.88
33449--33561	45	2.4	47	76	2	122	42	13	17	26	1.86
39698--40750	81	13.0	81	89	2	1531	36	10	20	31	1.87
39698--40750	244	4.3	243	89	2	1542	36	10	20	31	1.87
40795--40913	45	2.6	45	81	7	125	47	12	17	22	1.82
42492--42522	14	2.2	14	94	0	53	77	0	9	12	0.99
42525--42590	15	4.4	15	71	19	57	62	1	1	34	1.14
42564--42648	12	6.9	12	69	14	57	62	0	7	30	1.22
42537--42655	36	3.2	37	73	17	97	61	0	5	31	1.26
42618--42660	16	2.6	16	81	3	50	69	0	6	23	1.12
42683--42713	2	15.5	2	100	0	62	51	0	0	48	1.00
44128--44334	110	1.9	110	85	2	290	22	18	22	36	1.95
45428--45452	11	2.3	11	100	0	50	0	0	8	92	0.40
55763--55825	29	2.2	29	82	5	74	65	1	15	17	1.36
55917--56001	20	4.4	19	73	17	59	71	3	7	17	1.23
55954--55984	14	2.2	14	94	0	53	77	0	9	12	0.99
55987--56050	16	4.1	15	73	18	60	64	1	1	32	1.13
56026--56082	19	2.9	19	71	7	51	61	0	7	31	1.23
56157--56185	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58121--58176	25	2.3	25	84	6	71	28	10	5	55	1.56
59118--59160	20	2.2	20	91	0	68	27	23	4	44	1.73
59144--59273	45	2.9	45	90	4	201	31	20	7	40	1.80
59816--59935	3	40.0	3	94	0	213	32	1	0	65	1.02
60443--60485	16	2.9	14	80	16	50	76	2	20	0	0.89
60453--60485	16	2.1	16	94	0	57	78	0	21	0	0.75
61332--61382	17	2.9	18	77	8	52	54	0	0	45	0.99
72766--72852	11	7.7	11	82	12	106	85	0	14	0	0.61
72769--72851	31	2.6	32	85	12	116	85	0	14	0	0.60
72772--72843	1	72.0	1	74	0	63	87	0	12	0	0.54
74004--74387	83	4.6	83	92	2	646	25	14	22	37	1.92
74004--74389	168	2.3	166	94	2	659	25	14	22	37	1.92
75221--76070	113	7.5	112	89	3	993	36	14	18	30	1.91
75219--76070	226	3.8	224	86	4	1110	36	15	18	30	1.91
75257--76070	339	2.4	339	87	3	1122	36	14	18	30	1.90
76323--76451	3	43.0	3	93	0	222	32	2	0	65	1.06
76969--77001	16	2.1	16	94	0	57	78	0	21	0	0.75
80845--80890	23	2.1	21	84	8	56	32	6	6	54	1.52
80975--81002	14	2.0	14	100	0	56	28	35	7	28	1.84
82907--82961	13	4.5	12	78	21	53	32	1	1	63	1.15
82907--82967	25	2.4	25	78	5	70	34	1	1	62	1.15
85660--85694	18	1.9	18	88	0	52	17	2	14	65	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86105--86136	15	2.1	15	94	0	55	15	9	6	68	1.36
92782--92828	14	3.5	14	72	21	55	12	27	0	59	1.34
92777--92828	26	2.0	26	100	0	104	15	30	0	53	1.42
100510--100554	21	2.3	19	85	11	56	33	22	17	26	1.96
100606--100656	20	2.5	20	96	0	93	33	23	17	25	1.96

Tables:   1

The End!