Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008130.1 Hibiscus syriacus cultivar Beakdansim tig00110685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92413
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2010 original size:33 final size:33
Alignment explanation
Indices: 1966--2034 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
1956 TCACCACATA
*
1966 TTCCATCACCATATCA-CGCCAATAACATCATCC
1 TTCCATCACCATATCATCACCAATAA-ATCATCC
* * *
1999 TTCCATTACCATTTCATCACCATTAAATCATCC
1 TTCCATCACCATATCATCACCAATAAATCATCC
2032 TTC
1 TTC
2035 ATTCATCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.30, C:0.36, G:0.01, T:0.32
Consensus pattern (33 bp):
TTCCATCACCATATCATCACCAATAAATCATCC
Found at i:2468 original size:14 final size:15
Alignment explanation
Indices: 2434--2480 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
2424 AACTTGGAGT
2434 GCAAAAGAAAGAAAA
1 GCAAAAGAAAGAAAA
*
2449 GAAAAAG-AAGAAAA
1 GCAAAAGAAAGAAAA
*
2463 TCAAAAGCAAAAGAAAA
1 GCAAAAG--AAAGAAAA
2480 G
1 G
2481 TGAAGCAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
17 7 0.28
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02
Consensus pattern (15 bp):
GCAAAAGAAAGAAAA
Found at i:5511 original size:18 final size:19
Alignment explanation
Indices: 5488--5537 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
5478 CGGCCAAGAG
* *
5488 CATGTATCTTCAT-TAAAT
1 CATGTATTTTCATAAAAAT
5506 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCAT-AAAAAT
5526 CATGTATTTTCA
1 CATGTATTTTCA
5538 AAGGGATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.43
20 16 0.57
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (19 bp):
CATGTATTTTCATAAAAAT
Found at i:9429 original size:19 final size:19
Alignment explanation
Indices: 9405--9451 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
9395 AACCCCTTTG
*
9405 AAATACATGATTTTGATGA
1 AAATACATGATTTTAATGA
9424 AAATACATGATTTTAATGA
1 AAATACATGATTTTAATGA
*
9443 AGATACATG
1 AAATACATG
9452 CTTAGCCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (19 bp):
AAATACATGATTTTAATGA
Found at i:12513 original size:35 final size:37
Alignment explanation
Indices: 12446--12521 Score: 111
Period size: 35 Copynumber: 2.1 Consensus size: 37
12436 ATACTATTTC
* *
12446 CATCACCATAATTCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
*
12483 CATCACCATAGTCCATC-ACCA-TATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
12518 CATC
1 CATC
12522 CCAAATTCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 18 0.50
36 3 0.08
37 15 0.42
ACGTcount: A:0.30, C:0.36, G:0.04, T:0.30
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCCTATAT
Found at i:16080 original size:36 final size:36
Alignment explanation
Indices: 16040--16180 Score: 201
Period size: 36 Copynumber: 3.9 Consensus size: 36
16030 AACACCATCT
*
16040 TCCATCTCCATTATCACGCCTATATCATCACCATAG
1 TCCATCACCATTATCACGCCTATATCATCACCATAG
*
16076 TCCATCACCATTATCACGCCTTTATCATCACCATAG
1 TCCATCACCATTATCACGCCTATATCATCACCATAG
* * *
16112 TCCATCTCCATTATCACGCCTATATCGTCACCATAT
1 TCCATCACCATTATCACGCCTATATCATCACCATAG
* * * *
16148 TCCACCACCATTATCACACCCATATTATCACCA
1 TCCATCACCATTATCACGCCTATATCATCACCA
16181 ACTTATAAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 93 1.00
ACGTcount: A:0.28, C:0.38, G:0.04, T:0.30
Consensus pattern (36 bp):
TCCATCACCATTATCACGCCTATATCATCACCATAG
Found at i:19113 original size:90 final size:91
Alignment explanation
Indices: 18959--19140 Score: 285
Period size: 90 Copynumber: 2.0 Consensus size: 91
18949 CCTAGAACAC
*
18959 CCATGTGCCTTGCATATGACCAGCCCCCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGAACAGCCCCCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
* *
19024 AAGAGTTCTCTCCCTATTCGGCCAAG
66 AAGAGCTATCTCCCTATTCGGCCAAG
** * * *
19050 CCATGTGTTTTGCATGTGAACAG-CCCCATGTGCCTTGCATGAGGTTTATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGAACAGCCCCCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
19114 AAGAGCTATCTCCCTATTCGGCCAAG
66 AAGAGCTATCTCCCTATTCGGCCAAG
19140 C
1 C
19141 ATCATTTCCC
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
90 64 0.77
91 19 0.23
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGAACAGCCCCCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
AAGAGCTATCTCCCTATTCGGCCAAG
Found at i:23468 original size:90 final size:91
Alignment explanation
Indices: 23314--23495 Score: 267
Period size: 90 Copynumber: 2.0 Consensus size: 91
23304 CCTAGAACAC
*
23314 CCATGTGCCTTGCATATGACCAGCCACCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGAACAGCCACCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
* * *
23379 AAGAGTTCTCTCCCTATTCGGCCAAG
66 AAGAGCTATCTCCCTATTCGACCAAG
** * * * *
23405 CCATGTGTTTTGCATGTGAACAGCC-CCATGTGCCTTGCATGTGGTTTATTTAGGCGCCAAGATG
1 CCATGTGCCTTGCATATGAACAGCCACCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
23469 AAGAGCTATCTCCCTATTCGACCAAG
66 AAGAGCTATCTCCCTATTCGACCAAG
23495 C
1 C
23496 ATCATTTTCC
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 60 0.74
91 21 0.26
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (91 bp):
CCATGTGCCTTGCATATGAACAGCCACCATGTGCCTTGCATGAGGATCATTTAGGCGCCAAGATG
AAGAGCTATCTCCCTATTCGACCAAG
Found at i:32014 original size:18 final size:19
Alignment explanation
Indices: 31985--32021 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
31975 GTGCTTCCAA
31985 CTTTTCTTTCTTTTCTTTG
1 CTTTTCTTTCTTTTCTTTG
*
32004 CTTTT-TTTCTTTTTTTTG
1 CTTTTCTTTCTTTTCTTTG
32022 AGTGCTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.78
Consensus pattern (19 bp):
CTTTTCTTTCTTTTCTTTG
Found at i:36241 original size:8 final size:8
Alignment explanation
Indices: 36230--36278 Score: 98
Period size: 8 Copynumber: 6.1 Consensus size: 8
36220 GAGAAAAATC
36230 AGAAAAGA
1 AGAAAAGA
36238 AGAAAAGA
1 AGAAAAGA
36246 AGAAAAGA
1 AGAAAAGA
36254 AGAAAAGA
1 AGAAAAGA
36262 AGAAAAGA
1 AGAAAAGA
36270 AGAAAAGA
1 AGAAAAGA
36278 A
1 A
36279 AAGAAAAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (8 bp):
AGAAAAGA
Found at i:36288 original size:24 final size:24
Alignment explanation
Indices: 36230--36288 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
36220 GAGAAAAATC
*
36230 AGAAAAGAAGAAAAGAAGAAAAGA
1 AGAAAAAAAGAAAAGAAGAAAAGA
*
36254 AGAAAAGAAGAAAAGAAGAAAAGA
1 AGAAAAAAAGAAAAGAAGAAAAGA
36278 A-AAGAAAAAGA
1 AGAA-AAAAAGA
36289 GAAGTTCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (24 bp):
AGAAAAAAAGAAAAGAAGAAAAGA
Found at i:39639 original size:19 final size:21
Alignment explanation
Indices: 39615--39668 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
39605 TTCGGCCAAG
* *
39615 ATCATGTATCTTCA-TT-GAA
1 ATCATGTATTTTCATTTAAAA
39634 ATCATGTATTTTCATTTAAAA
1 ATCATGTATTTTCATTTAAAA
39655 ATCATGTATTTTCA
1 ATCATGTATTTTCA
39669 AAGGGGTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 13 0.42
20 2 0.06
21 16 0.52
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.46
Consensus pattern (21 bp):
ATCATGTATTTTCATTTAAAA
Found at i:42677 original size:15 final size:15
Alignment explanation
Indices: 42657--42693 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
42647 ATATTTATAT
*
42657 GGGCGGGCGGATGCG
1 GGGCGGGCGGATGCA
42672 GGGCGGGCGGATGCA
1 GGGCGGGCGGATGCA
42687 GGGCGGG
1 GGGCGGG
42694 TAATGTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.19, G:0.68, T:0.05
Consensus pattern (15 bp):
GGGCGGGCGGATGCA
Found at i:48320 original size:14 final size:13
Alignment explanation
Indices: 48301--48330 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
48291 GTGCTTCCAA
48301 CTTTTCTTTCTTTT
1 CTTTTCTTT-TTTT
48315 CTTTTCTTTTTTT
1 CTTTTCTTTTTTT
48328 CTT
1 CTT
48331 CTTTTTGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
CTTTTCTTTTTTT
Found at i:50606 original size:19 final size:21
Alignment explanation
Indices: 50563--50614 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
50553 GAAACCCCTT
50563 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
50584 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
50603 TGAAGATACATG
1 TGAAAATACATG
50615 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:54695 original size:19 final size:21
Alignment explanation
Indices: 54652--54703 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
54642 GAAACCCCTT
54652 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
54673 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
54692 TGAAGATACATG
1 TGAAAATACATG
54704 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:58783 original size:19 final size:21
Alignment explanation
Indices: 58740--58791 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
58730 GAAACCCCTT
58740 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
58761 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
58780 TGAAGATACATG
1 TGAAAATACATG
58792 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:59632 original size:17 final size:18
Alignment explanation
Indices: 59598--59634 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
59588 AACTATATAA
*
59598 TGCATATATATAATGATG
1 TGCATATATATAAAGATG
59616 TGCATAT-TATAAAGATG
1 TGCATATATATAAAGATG
59633 TG
1 TG
59635 AACTATAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (18 bp):
TGCATATATATAAAGATG
Found at i:62870 original size:19 final size:21
Alignment explanation
Indices: 62827--62878 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
62817 GAAACCCCTT
62827 TGAAAATACATGACTTTTAAA
1 TGAAAATACATGACTTTTAAA
62848 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGACTTTTAAA
*
62867 TGAAGATACATG
1 TGAAAATACATG
62879 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (21 bp):
TGAAAATACATGACTTTTAAA
Found at i:66377 original size:19 final size:18
Alignment explanation
Indices: 66355--66401 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
66345 AGTGAATAAT
66355 AATATAAGTAATGAAAAGA
1 AATATAAG-AATGAAAAGA
* *
66374 AATAATTAGAATGAAATGA
1 AAT-ATAAGAATGAAAAGA
66393 AATA-AAGAA
1 AATATAAGAA
66402 AGGATAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.17
18 1 0.04
19 15 0.62
20 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (18 bp):
AATATAAGAATGAAAAGA
Found at i:66835 original size:20 final size:20
Alignment explanation
Indices: 66810--66865 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
66800 GAAACCCCTT
*
66810 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
66830 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
* *
66849 TGAAGATACATGCTTTT
1 TGAAAATACATGATTTT
66866 GGCCGAATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:67702 original size:30 final size:31
Alignment explanation
Indices: 67662--67721 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
67652 ACATGTTCCC
**
67662 ATGATATCTAAATGAAATGAAAACATAATAA
1 ATGATATCTAAAACAAATGAAAACATAATAA
* *
67693 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACAAATGAAAACATAATA
67722 TAAAGCTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (31 bp):
ATGATATCTAAAACAAATGAAAACATAATAA
Found at i:70479 original size:19 final size:18
Alignment explanation
Indices: 70457--70503 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
70447 AGTGAATAAT
70457 AATATAAGTAATGAAAAGA
1 AATATAAG-AATGAAAAGA
* *
70476 AATAATTAGAATGAAATGA
1 AAT-ATAAGAATGAAAAGA
70495 AATA-AAGAA
1 AATATAAGAA
70504 ATGATAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.17
18 1 0.04
19 15 0.62
20 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (18 bp):
AATATAAGAATGAAAAGA
Found at i:70973 original size:19 final size:20
Alignment explanation
Indices: 70912--70987 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 20
70902 GAAACTCCTT
70912 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTGA
70932 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTGA
* *
70952 TGAAAATACAAGA-TTTTAA
1 TGAAAATACATGATTTTTGA
* *
70971 TGAAGATACATGCTTTT
1 TGAAAATACATGATTTT
70988 GGCCGAATGG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
19 15 0.30
20 35 0.70
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (20 bp):
TGAAAATACATGATTTTTGA
Found at i:71932 original size:30 final size:31
Alignment explanation
Indices: 71892--71951 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
71882 ACATGCTGCC
**
71892 ATGATATCTAAATGAAATGCAAACATAATAA
1 ATGATATCTAAAACAAATGCAAACATAATAA
* *
71923 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACAAATGCAAACATAATA
71952 TAAAGCTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.27
Consensus pattern (31 bp):
ATGATATCTAAAACAAATGCAAACATAATAA
Found at i:77574 original size:9 final size:9
Alignment explanation
Indices: 77560--77602 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
77550 GTGCTTCAAC
77560 TTCTTTTCT
1 TTCTTTTCT
*
77569 TTCTTTTAT
1 TTCTTTTCT
77578 TTCTTTTCT
1 TTCTTTTCT
77587 TTGCTTTTC-
1 TT-CTTTTCT
77596 TTCTTTT
1 TTCTTTT
77603 GAGTGCTGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
8 5 0.16
9 20 0.65
10 6 0.19
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (9 bp):
TTCTTTTCT
Found at i:79999 original size:93 final size:93
Alignment explanation
Indices: 79838--80432 Score: 579
Period size: 93 Copynumber: 6.5 Consensus size: 93
79828 CTTCAATGTT
* * * * * *
79838 AAACTTACATTCATTAATGTAATAACTTGCATAAGTCAACCTCTTTAGCCCGTAAACATCAAAA-
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACAT-AAAAG
*
79902 TGTTTAGTCAAGACATTTCAACGCTATTC
65 TGTTTAGTTAAGACATTTCAACGCTATTC
* *
79931 AAACTTCCATCCATTATTGTAACAACTTGGATAAGTTAATCTCTTTAGTCCGTAAACA-AAAATG
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAA-G
* *
79995 TGTTTAGTTAA-AGCATTTCAATGTTATTC
65 TGTTTAGTTAAGA-CATTTCAACGCTATTC
** * * * * *
80024 AAACTTTTATTCATTATTGCAACAA-TATGGAAAAGTTAA---C---A-T--GTAAACATCAAAG
1 AAACTTCCATCCATTAATGTAACAACT-TGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAG
*
80079 TGTTTAGTTAAGACATTTCGACGCTATTC
65 TGTTTAGTTAAGACATTTCAACGCTATTC
** * * * *
80108 ATTCTTCCAGCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCATAATCATCAAAGT
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGT
* * * * *
80173 TTTTAGTTTATACATTTCAATGCTAATC
66 GTTTAGTTAAGACATTTCAACGCTATTC
* * ** * * ** * *
80201 AAACTTCCATCTATTAATGTCACAACTTTCACAAGTTAACTTCTTTAGTCTATAAACATCAATGT
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGT
80266 GTTTAGTTAAGACATTTCAACGCTATTC
66 GTTTAGTTAAGACATTTCAACGCTATTC
* *
80294 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTAAACCTC-TTAGTCTGTAAACATAAAAGT
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGT
* * * *
80358 GTTTTGTTAATACATTTCAACACTACTC
66 GTTTAGTTAAGACATTTCAACGCTATTC
* ** * * * *
80386 AATCTTCCAAACTTTAATGTAACAACTTTGATAACTTTACCTCTTTA
1 AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTA
80433 CTAAACACTT
Statistics
Matches: 409, Mismatches: 76, Indels: 34
0.79 0.15 0.07
Matches are distributed among these distances:
84 60 0.15
85 5 0.01
86 1 0.00
87 2 0.00
90 2 0.00
91 5 0.01
92 79 0.19
93 255 0.62
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (93 bp):
AAACTTCCATCCATTAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGT
GTTTAGTTAAGACATTTCAACGCTATTC
Found at i:80191 original size:177 final size:180
Alignment explanation
Indices: 79889--80413 Score: 568
Period size: 177 Copynumber: 2.9 Consensus size: 180
79879 TCTTTAGCCC
* * *
79889 GTAAACATCAAAATGTTTAGTCAAGACATTTCAACGCTATTCAAACTTCCATCCATTATTGTAAC
1 GTAAACATCAAAGTGTTTAGTTAAGACATTTCAACGCTATTCAAACTTCCATCCATTAATGTAAC
* * *
79954 AACTTGGATAAGTTAATCTCTTTAGTCCGTAAACA-AAAATGTGTTTAG-TTAAAGCATTTCAAT
66 AACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAA-GTTTTTAGTTTATA-CATTTCAAT
* * ** * *
80017 GTTATTCAAACTTTTAT-TCATTATTG-CAACAA-TATGGAAAAGTTAA-C-A-T
129 GCTAATCAAACTTCCATCT-ATTAATGTC-ACAACT-TGCAAAAGTTAATCTACT
* ** *
80066 GTAAACATCAAAGTGTTTAGTTAAGACATTTCGACGCTATTCATTCTTCCAGCCATTAATGTAAC
1 GTAAACATCAAAGTGTTTAGTTAAGACATTTCAACGCTATTCAAACTTCCATCCATTAATGTAAC
* * *
80131 AACTTGGATAAGTTAACCTCTTTAGTCCATAATCATCAAAGTTTTTAGTTTATACATTTCAATGC
66 AACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGTTTTTAGTTTATACATTTCAATGC
* *
80196 TAATCAAACTTCCATCTATTAATGTCACAACTTTCACAAGTTAACTTCTTTAGTCT
131 TAATCAAACTTCCATCTATTAATGTCACAACTTGCAAAAGTTAA--TC--TA--CT
* *
80252 ATAAACATCAATGTGTTTAGTTAAGACATTTCAACGCTATTCAAACTTCCATCCATTAATGTAAC
1 GTAAACATCAAAGTGTTTAGTTAAGACATTTCAACGCTATTCAAACTTCCATCCATTAATGTAAC
* * * **
80317 AACTTGGATAAGTAAACCTC-TTAGTCTGTAAACATAAAAGTGTTTT-GTTAATACATTTCAACA
66 AACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGT-TTTTAGTTTATACATTTCAATG
* * * *
80380 CTACTCAATCTTCCAAACT-TTAATGTAACAACTT
130 CTAATCAAACTTCC-ATCTATTAATGTCACAACTT
80414 TGATAACTTT
Statistics
Matches: 293, Mismatches: 39, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
177 138 0.47
178 10 0.03
180 1 0.00
183 1 0.00
185 57 0.19
186 86 0.29
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.36
Consensus pattern (180 bp):
GTAAACATCAAAGTGTTTAGTTAAGACATTTCAACGCTATTCAAACTTCCATCCATTAATGTAAC
AACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATAAAAGTTTTTAGTTTATACATTTCAATGC
TAATCAAACTTCCATCTATTAATGTCACAACTTGCAAAAGTTAATCTACT
Found at i:80770 original size:93 final size:91
Alignment explanation
Indices: 80427--81080 Score: 325
Period size: 93 Copynumber: 7.1 Consensus size: 91
80417 TAACTTTACC
* * * ** * * *
80427 TCTTTACTAAACACTTTGTTGTTTATGGACTAAAGAGGTTAACTTATCCAACTTGTTACATTAAT
1 TCTTAACTTAACACTTTGAT-TTTACAGACTAAA-AGATTAACTTATCCAAGTTGTTACA-TCA-
* * ** *
80492 ATTAATGGATGGAAGTTTGAATAGCGTTGGTATA
62 A-TAA---ATGGAAGTTTTAATAGCATTGAAATG
* * * * ** *
80526 TCTTAACTAAACACTTTGATGTTTACGGACTAAAGAGGTTAACTTGTGAAAGTTGTTACATTAAT
1 TCTTAACTTAACACTTTGAT-TTTACAGACTAAA-AGATTAACTTATCCAAGTTGTTACATCAAT
* * ** *
80591 AGATGGAA-TGTTAAATAGTGTTTAAATG
64 AAATGGAAGT-TTTAATAGCATTGAAATG
* * * * * *
80619 TATTAAC-TAACATTTTGATGTGTATAGAATAAGGAA-TTTAACTTATCCAAGTTGTTACATCAA
1 TCTTAACTTAACACTTTGAT-TTTACAGACTAA--AAGATTAACTTATCCAAGTTGTTACATCAA
* *
80682 TAAATTGAAGTTTTAATAGCATTGAATTG
63 TAAATGGAAGTTTTAATAGCATTGAAATG
* * *
80711 TCTTAACTTAACACTTTGATTATTACAGACTAAACAGATTAAGTTATCCAAGTTATTACATTAAT
1 TCTTAACTTAACACTTTGATT-TTACAGACTAAA-AGATTAACTTATCCAAGTTGTTACATCAAT
** * * * *
80776 GGATGGAA-TAATTAATTGCATCGAACTG
64 AAATGGAAGT-TTTAATAGCATTGAAATG
* * * * *
80804 TCTTAACTAAACACTTTGATTTTTAC--A-T----G-TTAACTTTTCCATGTTGTTACAACAACA
1 TCTTAACTTAACACTTTGA-TTTTACAGACTAAAAGATTAACTTATCCAAGTTGTTACATCAATA
* *
80861 AATGGAAGTTTGAATAGCACTGAAATG
65 AATGGAAGTTTTAATAGCATTGAAATG
* *
80888 TTTTAAC-TAAGCACTTTGATGTTTACAGACAAAAGAGATTAACTTATCCAAGTTGTTACAAT-A
1 TCTTAACTTAA-CACTTTGAT-TTTACAGACTAAA-AGATTAACTTATCCAAGTTGTTAC-ATCA
** * *
80951 ATGGATGGAAGTTTGAATAGGGA-TGAAATG
62 ATAAATGGAAGTTTTAATA-GCATTGAAATG
* ** ** * * * * *
80981 CCTTAACGAAATGCTTTGATGATTACGGACTTAAGAGGTTAACTTATGCAAGTTGTTACAT-AA-
1 TCTTAACTTAACACTTTGAT-TTTACAGAC-TAAAAGATTAACTTATCCAAGTTGTTACATCAAT
* * ** *
81044 AGTATGGAAGTTTGAATAGTGTTAAAATG
64 A-AATGGAAGTTTTAATAGCATTGAAATG
81073 TCTTAACT
1 TCTTAACT
81081 AAAGAGGTTA
Statistics
Matches: 433, Mismatches: 94, Indels: 63
0.73 0.16 0.11
Matches are distributed among these distances:
83 3 0.01
84 57 0.13
85 2 0.00
86 1 0.00
90 1 0.00
91 3 0.01
92 103 0.24
93 195 0.45
94 10 0.02
96 2 0.00
97 1 0.00
98 2 0.00
99 53 0.12
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (91 bp):
TCTTAACTTAACACTTTGATTTTACAGACTAAAAGATTAACTTATCCAAGTTGTTACATCAATAA
ATGGAAGTTTTAATAGCATTGAAATG
Found at i:80783 original size:185 final size:177
Alignment explanation
Indices: 80500--80960 Score: 453
Period size: 177 Copynumber: 2.6 Consensus size: 177
80490 ATATTAATGG
** ** * * * *
80500 ATGGAAGTTTGAATAGCGTTGGTATATCTTAACTAAACACTTTGATGTTTACGGACTAAAGAGGT
1 ATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTAACACTTTGATGTTTACAGACTAAAGAGAT
* ** * * ** **
80565 TAACTTGTGAAAGTTGTTACATTAATAGATGGAAT-GTTAAATAGTGTTTAAATGTATTAACT-A
66 TAACTTATCCAAGTTGTTACATTAATGGATGGAATAATT-AATAGCATCGAAATGTATTAACTAA
* * *
80628 ACATTTTGATGTGTATAGAATAAGGAATTTAACTTATCCAAGTTGTTACATCAATAA
130 ACACTTTGAT-T-TATA-AAT---G---TTAACTTATCCAAGTTGTTACAACAACAA
* * * * *
80685 ATTGAAGTTTTAATAGCATTGAATTGTCTTAACTTAACACTTTGAT-TATTACAGACTAAACAGA
1 ATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTAACACTTTGATGT-TTACAGACTAAAGAGA
* * * * *
80749 TTAAGTTATCCAAGTTATTACATTAATGGATGGAATAATTAATTGCATCGAACTGTCTTAACTAA
65 TTAACTTATCCAAGTTGTTACATTAATGGATGGAATAATTAATAGCATCGAAATGTATTAACTAA
* * * *
80814 ACACTTTGATTTTTACATGTTAACTTTTCCATGTTGTTACAACAACAA
130 ACACTTTGATTTATAAATGTTAACTTATCCAAGTTGTTACAACAACAA
* *
80862 ATGGAAGTTTGAATAGCACTGAAATGTTTTAAC-TAAGCACTTTGATGTTTACAGACAAAAGAGA
1 ATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTAA-CACTTTGATGTTTACAGACTAAAGAGA
*
80926 TTAACTTATCCAAGTTGTTACAATAATGGATGGAA
65 TTAACTTATCCAAGTTGTTACATTAATGGATGGAA
80961 GTTTGAATAG
Statistics
Matches: 229, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
176 3 0.01
177 108 0.47
178 1 0.00
180 1 0.00
183 2 0.01
184 4 0.02
185 98 0.43
186 12 0.05
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (177 bp):
ATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTAACACTTTGATGTTTACAGACTAAAGAGAT
TAACTTATCCAAGTTGTTACATTAATGGATGGAATAATTAATAGCATCGAAATGTATTAACTAAA
CACTTTGATTTATAAATGTTAACTTATCCAAGTTGTTACAACAACAA
Found at i:81000 original size:177 final size:176
Alignment explanation
Indices: 80656--81000 Score: 419
Period size: 177 Copynumber: 1.9 Consensus size: 176
80646 AATAAGGAAT
* * * * * *
80656 TTAACTTATCCAAGTTGTTACATCAATAAATTGAAGTTTTAATAGCATTGAATTGTCTTAACTTA
1 TTAACTTATCCAAGTTGTTACAACAACAAATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTA
* * *
80721 ACACTTTGATTATTACAGACTAAACAGATTAAGTTATCCAAGTTATTACATTAATGGATGGAATA
66 ACACTTTGATTATTACAGACAAAACAGATTAACTTATCCAAGTTATTACAATAATGGATGGAAT-
* * * *
80786 ATTAATTGCATCGAACTGTCTTAACTAAACACTTTGATTTTTACATG
130 ATTAATGGCATCGAAATGCCTTAACGAAACACTTTGATTTTTACATG
* * *
80833 TTAACTTTTCCATGTTGTTACAACAACAAATGGAAGTTTGAATAGCACTGAAATGTTTTAAC-TA
1 TTAACTTATCCAAGTTGTTACAACAACAAATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTA
* *
80897 AGCACTTTGATGT-TTACAGACAAAAGAGATTAACTTATCCAAGTTGTTACAATAATGGATGGAA
66 A-CACTTTGAT-TATTACAGACAAAACAGATTAACTTATCCAAGTTATTACAATAATGGATGGAA
* **
80961 GT-TTGAATAGGGAT-GAAATGCCTTAACGAAATGCTTTGAT
129 -TATT-AAT-GGCATCGAAATGCCTTAACGAAACACTTTGAT
81001 GATTACGGAC
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
176 5 0.04
177 132 0.93
178 5 0.04
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (176 bp):
TTAACTTATCCAAGTTGTTACAACAACAAATGGAAGTTTGAATAGCACTGAAATGTCTTAACTTA
ACACTTTGATTATTACAGACAAAACAGATTAACTTATCCAAGTTATTACAATAATGGATGGAATA
TTAATGGCATCGAAATGCCTTAACGAAACACTTTGATTTTTACATG
Found at i:81713 original size:439 final size:439
Alignment explanation
Indices: 81110--81992 Score: 1766
Period size: 439 Copynumber: 2.0 Consensus size: 439
81100 AAGTTTTACA
81110 TTAATGGATGGTAGTTTAAATATTGTTGAAATGTCTTAACTAAAAACTTTGATGTTTACGGAATA
1 TTAATGGATGGTAGTTTAAATATTGTTGAAATGTCTTAACTAAAAACTTTGATGTTTACGGAATA
81175 AGGAGGTTAACTTATCAATGTTTTAACTTTGAATATTGTTGAAACATTTTTAAAAAATGCTTTGT
66 AGGAGGTTAACTTATCAATGTTTTAACTTTGAATATTGTTGAAACATTTTTAAAAAATGCTTTGT
81240 TGTTTACGAACTAAATAGATTAACTTATCCAAGTTCTTACATTAATAGATGAAAGTTTGAATAGT
131 TGTTTACGAACTAAATAGATTAACTTATCCAAGTTCTTACATTAATAGATGAAAGTTTGAATAGT
81305 GATGAAAGTTTAACTAGTGTAGAAATATATTAACTAAACACTTTGATGTTTATGGACTAAAGAGG
196 GATGAAAGTTTAACTAGTGTAGAAATATATTAACTAAACACTTTGATGTTTATGGACTAAAGAGG
81370 TTAACTAAACCAAGTTGTTACATTAATGGATGCAAGTTTAAATTGCGTTGAAAAGTCTTTACAAA
261 TTAACTAAACCAAGTTGTTACATTAATGGATGCAAGTTTAAATTGCGTTGAAAAGTCTTTACAAA
81435 ACACTTTGATGTGTACGTATTAAGGAGGTTAACTTATCCAAGTTGTTACATTAATGGATGAAAGT
326 ACACTTTGATGTGTACGTATTAAGGAGGTTAACTTATCCAAGTTGTTACATTAATGGATGAAAGT
81500 TCGTAAACATTAAAGTGTTTAGTAAAAAAGTTTTAACAATATTTAAACT
391 TCGTAAACATTAAAGTGTTTAGTAAAAAAGTTTTAACAATATTTAAACT
81549 TTAATGGATGGTAGTTTAAATATTGTTGAAATGTCTTAACTAAAAACTTTGATGTTTACGGAATA
1 TTAATGGATGGTAGTTTAAATATTGTTGAAATGTCTTAACTAAAAACTTTGATGTTTACGGAATA
81614 AGGAGGTTAACTTATCAATGTTTTAACTTTGAATATTGTTGAAACATTTTTAAAAAATGCTTTGT
66 AGGAGGTTAACTTATCAATGTTTTAACTTTGAATATTGTTGAAACATTTTTAAAAAATGCTTTGT
81679 TGTTTACGAACTAAATAGATTAACTTATCCAAGTTCTTACATTAATAGATGAAAGTTTGAATAGT
131 TGTTTACGAACTAAATAGATTAACTTATCCAAGTTCTTACATTAATAGATGAAAGTTTGAATAGT
81744 GATGAAAGTTTAACTAGTGTAGAAATATATTAACTAAACACTTTGATGTTTATGGACTAAAGAGG
196 GATGAAAGTTTAACTAGTGTAGAAATATATTAACTAAACACTTTGATGTTTATGGACTAAAGAGG
81809 TTAACTAAACCAAGTTGTTACATTAATGGATGCAAGTTTAAATTGCGTTGAAAAGTCTTTACAAA
261 TTAACTAAACCAAGTTGTTACATTAATGGATGCAAGTTTAAATTGCGTTGAAAAGTCTTTACAAA
81874 ACACTTTGATGTGTACGTATTAAGGAGGTTAACTTATCCAAGTTGTTACATTAATGGATGAAAGT
326 ACACTTTGATGTGTACGTATTAAGGAGGTTAACTTATCCAAGTTGTTACATTAATGGATGAAAGT
81939 TCGTAAACATTAAAGTGTTTAGTAAAAAAGTTTTAACAATATTTAAACT
391 TCGTAAACATTAAAGTGTTTAGTAAAAAAGTTTTAACAATATTTAAACT
81988 TTAAT
1 TTAAT
81993 CCATTAATGT
Statistics
Matches: 444, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
439 444 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (439 bp):
TTAATGGATGGTAGTTTAAATATTGTTGAAATGTCTTAACTAAAAACTTTGATGTTTACGGAATA
AGGAGGTTAACTTATCAATGTTTTAACTTTGAATATTGTTGAAACATTTTTAAAAAATGCTTTGT
TGTTTACGAACTAAATAGATTAACTTATCCAAGTTCTTACATTAATAGATGAAAGTTTGAATAGT
GATGAAAGTTTAACTAGTGTAGAAATATATTAACTAAACACTTTGATGTTTATGGACTAAAGAGG
TTAACTAAACCAAGTTGTTACATTAATGGATGCAAGTTTAAATTGCGTTGAAAAGTCTTTACAAA
ACACTTTGATGTGTACGTATTAAGGAGGTTAACTTATCCAAGTTGTTACATTAATGGATGAAAGT
TCGTAAACATTAAAGTGTTTAGTAAAAAAGTTTTAACAATATTTAAACT
Found at i:82108 original size:93 final size:93
Alignment explanation
Indices: 81936--82580 Score: 616
Period size: 93 Copynumber: 6.9 Consensus size: 93
81926 AATGGATGAA
* * * * *** * **
81936 AGTTCGTAAACATTAAAGTGTTTAG-TAAAAAAGTTTTAACAATATTTAAACTTTAATCCATTAA
1 AGTTCGTAAACATCAAAGTGTTTAGTTAAGACA-TTTCAATGCTATTCAAACTTCCATCCATTAA
*
82000 TGTAACAACTAGGATAAGTTAACCTCTTT
65 TGTAACAACTTGGATAAGTTAACCTCTTT
** * * *
82029 AGTTCGTAAATGTCAAAGTGTTTAGTTGAGACATTTCAATGCTATTTAAACTACCATCCATTAAT
1 AGTTCGTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAAT
** *
82094 AAAACTACTTGGATAAGTTAACCTCTTT
66 GTAACAACTTGGATAAGTTAACCTCTTT
* * * * * * *
82122 AGTGCGTAAACATCAAAATGTTTAGTTAAGACATTTAAACGCTGTTTAAACTTCTATCCATTAAT
1 AGTTCGTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAAT
* *
82187 GTAACAACTTGGATGAGTTAACCTCCTT
66 GTAACAACTTGGATAAGTTAACCTCTTT
* * * * *
82215 -GGTCTGTAAACATCAAAGTATTTAGTAAAGACATTTCAATGCTACTCAAAGTTCCATCCATTAA
1 AGTTC-GTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAA
* *
82279 TGTAACAACTTGGATGAGTTAACCTCCTT
65 TGTAACAACTTGGATAAGTTAACCTCTTT
* * * * *
82308 -GGTCTGTAAACATCAAAGTATTTAGTAAAGACATTTCAATGTTATTCAAAGTTCCATCCATTAA
1 AGTTC-GTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAA
* **
82372 TGTAACAACTTGGATAAGTTAATCAATTT
65 TGTAACAACTTGGATAAGTTAACCTCTTT
* * * * * *
82401 TGTTTGTAAACAACAAAGTGTTTAGTTAAGACATATC-ATCGCTATTCAAATTTTCATCCATTAA
1 AGTTCGTAAACATCAAAGTGTTTAGTTAAGACATTTCAAT-GCTATTCAAACTTCCATCCATTAA
* * * *
82465 AGTAACAAATTTGATAAGTTAACCTTTTT
65 TGTAACAACTTGGATAAGTTAACCTCTTT
* * ** ** * * ** * *
82494 AG-TCTATAAACATGAAAGCATTTAACTATGACCTTTCAACCCTATTCAAACTTTCATCTATTAA
1 AGTTC-GTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAA
*
82558 TGTAACAACTGGGATAAGTTAAC
65 TGTAACAACTTGGATAAGTTAAC
82581 ATGTTTATAT
Statistics
Matches: 460, Mismatches: 86, Indels: 12
0.82 0.15 0.02
Matches are distributed among these distances:
92 5 0.01
93 448 0.97
94 7 0.02
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (93 bp):
AGTTCGTAAACATCAAAGTGTTTAGTTAAGACATTTCAATGCTATTCAAACTTCCATCCATTAAT
GTAACAACTTGGATAAGTTAACCTCTTT
Found at i:82462 original size:279 final size:279
Alignment explanation
Indices: 81991--82580 Score: 682
Period size: 279 Copynumber: 2.1 Consensus size: 279
81981 TTAAACTTTA
* ** * *
81991 ATCCATTAATGTAACAACTAGGATAAGTTAACCTCTTTAGTTCGTAAATGTCAAAGTGTTTAGTT
1 ATCCATTAATGTAACAACTAGGATAAGTTAACCTCCTTAGTTCGTAAACATCAAAGTATTTAGTA
* * * **
82056 GAGACATTTCAATGCTATTTAAACTACCATCCATTAATAAAACTACTTGGATAAGTTAACCTCTT
66 AAGACATTTCAATGCTATTCAAACTACCATCCATTAATAAAACAACTTGGATAAGTTAACCAATT
* * * *
82121 TAGTGCGTAAACATCAAAATGTTTAGTTAAGACATTTAAACGCTGTTTAAACTTCTATCCATTAA
131 TAGTGCGTAAACAACAAAATGTTTAGTTAAGACATATAAACGCTATTCAAACTTCTATCCATTAA
* * * * * * *
82186 TGTAACAACTTGGATGAGTTAACCTCCTTGGTCTGTAAACATCAAAGTATTT-AGTAAAGACATT
196 AGTAACAAATTGGATAAGTTAACCTCCTTAGTCTATAAACATCAAAGCATTTAACT-AAGACATT
** *
82250 TCAATGCTACTCAAAGTTCC
260 TCAACCCTACTCAAACTTCC
* * *
82270 ATCCATTAATGTAACAACTTGGATGAGTTAACCTCCTT-GGTCTGTAAACATCAAAGTATTTAGT
1 ATCCATTAATGTAACAACTAGGATAAGTTAACCTCCTTAGTTC-GTAAACATCAAAGTATTTAGT
* * * ** *
82334 AAAGACATTTCAATGTTATTCAAAGTTCCATCCATTAATGTAACAACTTGGATAAGTTAATCAAT
65 AAAGACATTTCAATGCTATTCAAACTACCATCCATTAATAAAACAACTTGGATAAGTTAACCAAT
* ** * * * *
82399 TTTGTTTGTAAACAACAAAGTGTTTAGTTAAGACATATCATCGCTATTCAAA-TTTTCATCCATT
130 TTAGTGCGTAAACAACAAAATGTTTAGTTAAGACATATAAACGCTATTCAAACTTCT-ATCCATT
* ** * * *
82463 AAAGTAACAAATTTGATAAGTTAACCTTTTTAGTCTATAAACATGAAAGCATTTAACTATGACCT
194 AAAGTAACAAATTGGATAAGTTAACCTCCTTAGTCTATAAACATCAAAGCATTTAACTAAGACAT
* *
82528 TTCAACCCTATTCAAACTTTC
259 TTCAACCCTACTCAAACTTCC
* *
82549 ATCTATTAATGTAACAACTGGGATAAGTTAAC
1 ATCCATTAATGTAACAACTAGGATAAGTTAAC
82581 ATGTTTATAT
Statistics
Matches: 257, Mismatches: 51, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
278 6 0.02
279 249 0.97
280 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (279 bp):
ATCCATTAATGTAACAACTAGGATAAGTTAACCTCCTTAGTTCGTAAACATCAAAGTATTTAGTA
AAGACATTTCAATGCTATTCAAACTACCATCCATTAATAAAACAACTTGGATAAGTTAACCAATT
TAGTGCGTAAACAACAAAATGTTTAGTTAAGACATATAAACGCTATTCAAACTTCTATCCATTAA
AGTAACAAATTGGATAAGTTAACCTCCTTAGTCTATAAACATCAAAGCATTTAACTAAGACATTT
CAACCCTACTCAAACTTCC
Found at i:83140 original size:93 final size:93
Alignment explanation
Indices: 82726--83148 Score: 329
Period size: 93 Copynumber: 4.6 Consensus size: 93
82716 TGGAAGTTTG
** * * * *
82726 ATGTAACAACTTCTATAAGTTAACCTCCTCAGTCCGTAAACATCAGAGTGTTTAGTTAATACATT
1 ATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTTTAGTTAAGACATT
* * * *
82791 TCAATGCTATTT-AAACTCCTGTTTATT-
66 TCAATGATATTTAAAACTTC-ATCTATTA
* * * * *
82818 ATGGTAATAACTTGGATAAATTAACATATTTAGTCCGTGAACATCAAAGTGTTTAGTTAAGACAT
1 AT-GTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTTTAGTTAAGACAT
** * *
82883 TTCAA-CCT-TATACAAACTTCAACTATTA
65 TTCAATGATATTTA-AAACTTCATCTATTA
* * * * * * ** * * * *
82911 ATGTAACATCTTGGACATGTTAACTTATGTAGTTTGCAAACATCAAATTATTTAGTTAAGATATT
1 ATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTTTAGTTAAGACATT
** *
82976 TCAAT-AT-TATTCCAACTATC-TTTCATTA
66 TCAATGATAT-TTAAAACT-TCATCT-ATTA
* * *** * * *
83004 ATGGAACAACTTGGATAAGCTAACCTCCCAAGTACATAAACATCAAAATGTTTAGTTAAGACATT
1 ATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTTTAGTTAAGACATT
*
83069 TCAATGATATTTAAAATTTCATCTATTA
66 TCAATGATATTTAAAACTTCATCTATTA
* * *
83097 ATGTAACACCTTGAATAAGTTAACCTCTTTAGTCCGTATACATCAAAGTGTT
1 ATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTT
83149 ATTCAAGTTG
Statistics
Matches: 251, Mismatches: 69, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
91 2 0.01
92 68 0.27
93 171 0.68
94 9 0.04
95 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (93 bp):
ATGTAACAACTTGGATAAGTTAACCTCTTTAGTCCGTAAACATCAAAGTGTTTAGTTAAGACATT
TCAATGATATTTAAAACTTCATCTATTA
Found at i:83410 original size:93 final size:93
Alignment explanation
Indices: 83246--83732 Score: 548
Period size: 93 Copynumber: 5.2 Consensus size: 93
83236 AGACGAAAGG
* * * * * *
83246 TTGAATAGCTTTGAAAAGTCTTAACTAAATAGTTTGATGTTTACAGACTGAGGAGGTTAACTTAT
1 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTACAGACTAAAGAGGTTAACTTAT
* *
83311 CAAAGTTGTTACATTAATGGATTGAAGT
66 CCAAGTTGTTACATTAATGGATGGAAGT
** * *
83339 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGACATTTACGGACTAAAGAGGTTAACTTAA
1 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTACAGACTAAAGAGGTTAACTTAT
*
83404 CCAAGTTGTTACATTAATGGAAGGAAGT
66 CCAAGTTGTTACATTAATGGATGGAAGT
*** * * *
83432 TTGAATATTGTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAGGAGGTTAACTTAT
1 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTACAGACTAAAGAGGTTAACTTAT
*
83497 CCAAGTTGTTACAATAATGGATGGAAGT
66 CCAAGTTGTTACATTAATGGATGGAAGT
* ** *
83525 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTAAATTCTAACGAGGTTAACTTAT
1 TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTACAGACTAAAGAGGTTAACTTAT
**
83590 CCAAGTTGTTACATT--TGCAGATTAAAGT
66 CCAAGTTGTTACATTAATG--GATGGAAGT
* ** * * * * *
83618 TTAAATATTATTGAAATCTATTAATTAAACACTTTGATGATGTTTATTA-ACTAAATAGGTTAAC
1 TTGAATAGCATTGAAATGTCTTAACTAAACA-TTT--TGATGTTTA-CAGACTAAAGAGGTTAAC
* * * *
83682 TTATGCAAGTTGTTACAATAATGGGTGGAAGC
62 TTATCCAAGTTGTTACATTAATGGATGGAAGT
*
83714 TTGAATAGCGTTGAAATGT
1 TTGAATAGCATTGAAATGT
83733 TAAACTTCCA
Statistics
Matches: 330, Mismatches: 56, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
91 2 0.01
93 265 0.80
94 3 0.01
96 57 0.17
97 1 0.00
98 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (93 bp):
TTGAATAGCATTGAAATGTCTTAACTAAACATTTTGATGTTTACAGACTAAAGAGGTTAACTTAT
CCAAGTTGTTACATTAATGGATGGAAGT
Found at i:83953 original size:92 final size:93
Alignment explanation
Indices: 83747--83945 Score: 247
Period size: 92 Copynumber: 2.2 Consensus size: 93
83737 CTTCCATCCA
*
83747 TAACAACTTGGATAAGTTTACCACTTTAGTCCATAAACATCAAAGAGTTTAGTAAAAACATTTCA
1 TAACAACTTGGATAAGTTAACCACTTTAGTCCATAAACATCAAAGAGTTTAGTAAAAACATTTCA
* * * * *
83812 ACGTTTTTTAAACTTCCACCCATTAATG
66 AAGCTATTCAAACTTCAACCCATTAATG
* * ** * * *
83840 TAACAACTTGCATATGTTAACCACTTTAGTCTGTAAACATCAAA-ATTTTAGTTAAGACATTTCA
1 TAACAACTTGGATAAGTTAACCACTTTAGTCCATAAACATCAAAGAGTTTAGTAAAAACATTTCA
***
83904 AAGCTATTCAAACTTCAATGTATTAATG
66 AAGCTATTCAAACTTCAACCCATTAATG
83932 TAACAACTTGGATA
1 TAACAACTTGGATA
83946 CGATAACCTC
Statistics
Matches: 89, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
92 50 0.56
93 39 0.44
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (93 bp):
TAACAACTTGGATAAGTTAACCACTTTAGTCCATAAACATCAAAGAGTTTAGTAAAAACATTTCA
AAGCTATTCAAACTTCAACCCATTAATG
Found at i:84063 original size:110 final size:109
Alignment explanation
Indices: 83927--84148 Score: 273
Period size: 110 Copynumber: 2.0 Consensus size: 109
83917 TTCAATGTAT
** * * *
83927 TAATGTAACAACTTGGATACGATAACCTCCCCAGTTTGTAAACATGAAAGTGTTTAGTACATACA
1 TAATGTAACAACAAGGATAAGATAACCTCCCCAGTATGTAAACATCAAAGTGTTTAGTA-ATACA
* * * * *
83992 TTTTAATACTATTTAAAATTTCATCCATTAATGTATCAACTTGGA
65 TTTCAAAACTATTCAAAATTCCATCCATTAATGTAACAACTTGGA
* *** **
84037 TAATGTAACAACAAGGATAAGTTAACCTCTTTAGTATGTAAACATCAAAGTGTTTTTTAATACAT
1 TAATGTAACAACAAGGATAAGATAACCTCCCCAGTATGTAAACATCAAAGTGTTTAGTAATACAT
* *
84102 TTCAAAATTATTCAAACTTCCATCCATTAATGTAACAACTTGGA
66 TTCAAAACTATTCAAAATTCCATCCATTAATGTAACAACTTGGA
84146 TAA
1 TAA
84149 GTTAACCTTT
Statistics
Matches: 94, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
109 46 0.49
110 48 0.51
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (109 bp):
TAATGTAACAACAAGGATAAGATAACCTCCCCAGTATGTAAACATCAAAGTGTTTAGTAATACAT
TTCAAAACTATTCAAAATTCCATCCATTAATGTAACAACTTGGA
Found at i:84140 original size:92 final size:89
Alignment explanation
Indices: 84037--84272 Score: 275
Period size: 89 Copynumber: 2.6 Consensus size: 89
84027 TCAACTTGGA
** *
84037 TAATGTAACAACAAGGATAAGTTAACCTCTTTAGTATGTAAACATCAAAGTGTTTT-TTAATACA
1 TAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCTGTAAACATCAAAGTGTTTTATTAATACA
*
84101 TTTCAAAATTATTCAAACTTCCATCCAT
66 TTTC--AA-CATTCAAA-TTCCATCCAT
*
84129 TAATGTAACAACTTGGATAAGTTAACCTTTTTAGTCTGTAAACATCACAA-T-TTTTAGTTAATA
1 TAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCTGTAAACATCA-AAGTGTTTTA-TTAATA
* *
84192 TATTTCAACATTCAAATTTCATCCAT
64 CATTTCAACATTCAAATTCCATCCAT
* * *
84218 TAAAGTAACAACTTTGATAAGTTAACC-CATTTAGTCTAG-AAACATGAAAGTGTTT
1 TAATGTAACAACTTGGATAAGTTAACCTC-TTTAGTCT-GTAAACATCAAAGTGTTT
84273 AGTTATGACC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
88 2 0.02
89 50 0.40
90 11 0.09
91 6 0.05
92 44 0.35
93 13 0.10
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (89 bp):
TAATGTAACAACTTGGATAAGTTAACCTCTTTAGTCTGTAAACATCAAAGTGTTTTATTAATACA
TTTCAACATTCAAATTCCATCCAT
Found at i:84623 original size:93 final size:94
Alignment explanation
Indices: 84464--84997 Score: 330
Period size: 105 Copynumber: 5.5 Consensus size: 94
84454 TAACAACATA
* * * * * *
84464 GATAAGTTAACCTCCTTAGTCCATAAACATCCAAGTCTTTAGTTAATACATTTCAATGCTATTCA
1 GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTCA
*
84529 AACTTCTTTCCATT-ATGGTAATAACTTG
66 AACTTCTTTCCATTAATGGTAATAACCTG
* * * *
84557 GATAAATTAACATATTTAGTCTATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTCA
1 GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTC-
*
84622 AACTACCATTCAAACTTCCAACTATTAATGG-AATAACCTG
65 AA--A-C-TT----CTTTC--C-ATTAATGGTAATAACCTG
* * ** * * *
84662 GATATGTTAACCTCTGTAGTTTACAAACATCAAAGTGTTTAGTTAAGATATTTTAGTACTATTCA
1 GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTC-
* * *
84727 AACTACCATTCAAACTTCCAACTATTAATAG-AACAACCTG
65 AA--A-C-TT----CTTTC--C-ATTAATGGTAATAACCTG
* * * ** * * *
84767 GATATA-ATAACCTCTATAATTTACAAACATCAAATTGTTTAGTTAAGATATTTCAGTACTATTC
1 GATA-AGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTC
* * * * *
84831 AAACTACCATT-CATTGATGGTAACAACTTG
65 AAACT-TCTTTCCATTAATGGTAATAACCTG
* * * ***
84861 AATAAGTTAACCTCTTTAGTCCATAAACATCAAA-TGTTTAGTTAAAATATTCCAACGTTATTCA
1 GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTCA
* * * * *
84925 AAGTT-TCATGCATT-ATTGTAATAACATG
66 AACTTCT-TTCCATTAATGGTAATAACCTG
* *
84953 TATACGTTAACCTCTTTAGTCCATAAACATCAAA-TGTTTAGTTAA
1 GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAA
84998 AATGTTTAGT
Statistics
Matches: 365, Mismatches: 57, Indels: 39
0.79 0.12 0.08
Matches are distributed among these distances:
92 55 0.15
93 92 0.25
94 36 0.10
96 1 0.00
97 3 0.01
98 2 0.01
100 1 0.00
101 1 0.00
102 5 0.01
104 3 0.01
105 162 0.44
106 4 0.01
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (94 bp):
GATAAGTTAACCTCTTTAGTCCATAAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTCA
AACTTCTTTCCATTAATGGTAATAACCTG
Found at i:84706 original size:105 final size:105
Alignment explanation
Indices: 84581--84843 Score: 445
Period size: 105 Copynumber: 2.5 Consensus size: 105
84571 TTTAGTCTAT
*
84581 AAACATCAAAGTGTTTAGTTAAGATATTTCAATACTATTCAAACTACCATTCAAACTTCCAACTA
1 AAACATCAAAGTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCAAACTTCCAACTA
* * ** * *
84646 TTAATGGAATAACCTGGATATGTTAACCTCTGTAGTTTAC
66 TTAATAGAACAACCTGGATATAATAACCTCTATAATTTAC
*
84686 AAACATCAAAGTGTTTAGTTAAGATATTTTAGTACTATTCAAACTACCATTCAAACTTCCAACTA
1 AAACATCAAAGTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCAAACTTCCAACTA
84751 TTAATAGAACAACCTGGATATAATAACCTCTATAATTTAC
66 TTAATAGAACAACCTGGATATAATAACCTCTATAATTTAC
*
84791 AAACATCAAATTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCA
1 AAACATCAAAGTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCA
84844 TTGATGGTAA
Statistics
Matches: 148, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 148 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (105 bp):
AAACATCAAAGTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCAAACTTCCAACTA
TTAATAGAACAACCTGGATATAATAACCTCTATAATTTAC
Found at i:84981 original size:92 final size:92
Alignment explanation
Indices: 84791--85000 Score: 271
Period size: 92 Copynumber: 2.3 Consensus size: 92
84781 TATAATTTAC
* * *
84791 AAACATCAAATTGTTTAGTTAAGATATTTCAGTACTATTCAAACTACCATTCATTGATGGTAACA
1 AAACATCAAA-TGTTTAGTTAAAATATTCCAGTA-TATTCAAACTACCATGCATTGATGGTAACA
*
84856 ACTTGAATAAGTTAACCTCTTTAGTCCAT
64 ACATGAATAAGTTAACCTCTTTAGTCCAT
* ** * *
84885 AAACATCAAATGTTTAGTTAAAATATTCCAACGT-TATTCAAAGTTTCATGCATT-ATTGTAATA
1 AAACATCAAATGTTTAGTTAAAATATTCC-A-GTATATTCAAACTACCATGCATTGATGGTAACA
* *
84948 ACATGTATACGTTAACCTCTTTAGTCCAT
64 ACATGAATAAGTTAACCTCTTTAGTCCAT
84977 AAACATCAAATGTTTAGTTAAAAT
1 AAACATCAAATGTTTAGTTAAAAT
85001 GTTTAGTTAT
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
92 57 0.55
93 33 0.32
94 11 0.11
95 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (92 bp):
AAACATCAAATGTTTAGTTAAAATATTCCAGTATATTCAAACTACCATGCATTGATGGTAACAAC
ATGAATAAGTTAACCTCTTTAGTCCAT
Found at i:85002 original size:13 final size:13
Alignment explanation
Indices: 84984--85009 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84974 CATAAACATC
84984 AAATGTTTAGTTA
1 AAATGTTTAGTTA
84997 AAATGTTTAGTTA
1 AAATGTTTAGTTA
85010 TGCAAGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
AAATGTTTAGTTA
Found at i:85269 original size:93 final size:92
Alignment explanation
Indices: 85074--85283 Score: 215
Period size: 93 Copynumber: 2.3 Consensus size: 92
85064 TCCATCCGTC
* * *
85074 AATGTAACAACTTGGATAAGTTTACCTTTTAGTCCATAAACATCAAAGTGTTTAGTTAAAACATT
1 AATGTAACAACTTGGATAAGTTAACCCTTTAATCCATAAACATCAAAGTGTTTAGTTAAAACATT
* * * * *
85139 TCAACGTTTTTTAAACTGTCACCCATT
66 TCAAAGCTATTCAAACTGTCACACATT
** * * ** * * *
85166 AATCCAACAACTTGCATATGTTAACCACTTTAATCTGTAAACATCAAAGTTTTTAGTTCATACAT
1 AATGTAACAACTTGGATAAGTTAACC-CTTTAATCCATAAACATCAAAGTGTTTAGTTAAAACAT
* *
85231 TTCAAAGCTATTCAAACT-TCCATATATT
65 TTCAAAGCTATTCAAACTGT-CACACATT
*
85259 AATGTAACAACTTGGATACGTTAAC
1 AATGTAACAACTTGGATAAGTTAAC
85284 ATCCCCAGTT
Statistics
Matches: 93, Mismatches: 23, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
92 22 0.24
93 71 0.76
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (92 bp):
AATGTAACAACTTGGATAAGTTAACCCTTTAATCCATAAACATCAAAGTGTTTAGTTAAAACATT
TCAAAGCTATTCAAACTGTCACACATT
Found at i:85393 original size:17 final size:17
Alignment explanation
Indices: 85351--85387 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
85341 TTTCATCCAT
*
85351 TAATGTAACAACTTGGA
1 TAATGTAACAACATGGA
85368 TAATGTAACAACATGGA
1 TAATGTAACAACATGGA
85385 TAA
1 TAA
85388 GTTAACCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (17 bp):
TAATGTAACAACATGGA
Found at i:85667 original size:93 final size:91
Alignment explanation
Indices: 85368--85671 Score: 285
Period size: 93 Copynumber: 3.3 Consensus size: 91
85358 ACAACTTGGA
* * * *
85368 TAATGTAACAACATGGATAAGTTAA-CCTCTTTAGTCTGTAAATATCAAAGAGTTT-CTTAAGAC
1 TAATGTAACAAC-TGGATAAGTTAACCCT-TTTAGTCTGTAAACATCAAAGTGTTTAATTATGAC
*
85431 ATTTCAACACTATTCAAGCTTTCATACAT
64 ATTTCAACACTATTCAAACTTTCAT-CAT
* * * * *
85460 TAATGTAACAACTTGG-TTAGTTAACCTTTTTTTGTCCGTAAACATCACAGTGTTTAATTAAT-A
1 TAATGTAACAAC-TGGATAAGTTAACC-CTTTTAGTCTGTAAACATCAAAGTGTTTAATT-ATGA
* *
85523 CATTTCAACGCTATTCAAAGTTTCATCCAT
63 CATTTCAACACTATTCAAACTTTCAT-CAT
* ** * *
85553 TAAAGTAACAACTTTTATAAGTTAACCCTTTTAGTCTAG-AAACATGAAAGTGTTTAGTTATGAC
1 TAATGTAACAAC-TGGATAAGTTAACCCTTTTAGTCT-GTAAACATCAAAGTGTTTAATTATGAC
* * *
85617 CTTTAAACCCTATTCAAACTTTCATCTAT
64 ATTTCAACACTATTCAAACTTTCATC-AT
*
85646 TAATGTAACAACTGGGGTAAGTTAAC
1 TAATGTAACAACT-GGATAAGTTAAC
85672 TTGTTTATAT
Statistics
Matches: 171, Mismatches: 32, Indels: 17
0.78 0.15 0.08
Matches are distributed among these distances:
91 7 0.04
92 41 0.24
93 112 0.65
94 11 0.06
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (91 bp):
TAATGTAACAACTGGATAAGTTAACCCTTTTAGTCTGTAAACATCAAAGTGTTTAATTATGACAT
TTCAACACTATTCAAACTTTCATCAT
Found at i:86019 original size:93 final size:92
Alignment explanation
Indices: 85810--86019 Score: 215
Period size: 93 Copynumber: 2.3 Consensus size: 92
85800 TGGAAGTTTG
* * ** *
85810 ATGTAACAACTTGGATAAGTTAACCTCATTAGTCCGTAAACATTAAAATGTTTAGTTAATACATT
1 ATGTAACAACTTGGATAAGTTAACATCATTAGTCCGTAAACATCAAAATGACTAGTTAAGACATT
* * *
85875 TCAACAGTATTTAAACTTATATCCATT
66 TCAACAGTATTCAAACTTACAACCATT
* * * * *
85902 ATGGTAATAACTTGGATAAATTAACAT-ATTTAGTCTGTAAACATCAAAGTGACTAGTTAGGACA
1 AT-GTAACAACTTGGATAAGTTAACATCA-TTAGTCCGTAAACATCAAAATGACTAGTTAAGACA
** * *
85966 TTTCAACCTTATTCAAACTTCCAACTATT
64 TTTCAACAGTATTCAAACTTACAACCATT
* *
85995 AATGTAACAACCTGGATATGTTAAC
1 -ATGTAACAACTTGGATAAGTTAAC
86020 CTCTATAGTT
Statistics
Matches: 94, Mismatches: 21, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
92 3 0.03
93 89 0.95
94 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (92 bp):
ATGTAACAACTTGGATAAGTTAACATCATTAGTCCGTAAACATCAAAATGACTAGTTAAGACATT
TCAACAGTATTCAAACTTACAACCATT
Done.