Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008133.1 Hibiscus syriacus cultivar Beakdansim tig00110688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47300
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Found at i:8279 original size:30 final size:30
Alignment explanation
Indices: 8245--8316 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
8235 TCCGAAGGAC
* * *
8245 CTATCTAGAGGTTATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
8275 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
* *
8305 CTGTCCATAGGT
1 CTATCCAGAGGT
8317 TCCGAAGAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGCAA
Found at i:8370 original size:57 final size:58
Alignment explanation
Indices: 8304--8416 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 58
8294 ATCCTCGGCA
* *
8304 ACTGTCCATAGGT-TCCG-AAGAACCTAGGTAA-ACTGTCCATATGTTCCTTAGAACAAT
1 ACTGTCCATAGGTCT-CGAAAG-ACATAGGTAATACTGTCCATATGTTCCGTAGAACAAT
* *
8361 ACTGTCCATATGTCTCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACA
1 ACTGTCCATAGGTCTCGAAAGACATAGGTAATACTGTCCATATGTTCCGTAGAACA
8417 TAGGTATACC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
57 23 0.47
58 26 0.53
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (58 bp):
ACTGTCCATAGGTCTCGAAAGACATAGGTAATACTGTCCATATGTTCCGTAGAACAAT
Found at i:8418 original size:32 final size:30
Alignment explanation
Indices: 8303--8422 Score: 108
Period size: 32 Copynumber: 4.0 Consensus size: 30
8293 GATCCTCGGC
* * *
8303 AACTGTCCATAGGTTCCGAAGAACCTAGGT
1 AACTGTCCATATGTTCCGTAGAACATAGGT
*
8333 AAACTGTCCATATGTTCCTTAGAACA-A--T
1 -AACTGTCCATATGTTCCGTAGAACATAGGT
*
8361 -ACTGTCCATATG-TCTCG-AAAGACATAGGT
1 AACTGTCCATATGTTC-CGTAGA-ACATAGGT
8390 AATTCTGTCCATATGTTCCGTAGAACATAGGT
1 AA--CTGTCCATATGTTCCGTAGAACATAGGT
8422 A
1 A
8423 TACCCTCGAC
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
25 4 0.06
26 16 0.22
27 1 0.01
28 1 0.01
29 1 0.01
30 2 0.03
31 21 0.29
32 22 0.31
33 4 0.06
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (30 bp):
AACTGTCCATATGTTCCGTAGAACATAGGT
Found at i:13136 original size:30 final size:30
Alignment explanation
Indices: 13096--13167 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
13086 CCCGAAGGAC
* * *
13096 CTATCTAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCATCGGCAA
13126 CTATCCAGAGGTCATAAAGATCATCGGCAA
1 CTATCCAGAGGTCATAAAGATCATCGGCAA
* *
13156 CTGTCCATAGGT
1 CTATCCAGAGGT
13168 TCCGAAGAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCATCGGCAA
Found at i:13225 original size:31 final size:31
Alignment explanation
Indices: 13159--13281 Score: 97
Period size: 31 Copynumber: 3.9 Consensus size: 31
13149 TCGGCAACTG
* * * * *
13159 TCCATAGGTTCCGA-AGAACCTAGGTAAATTG
1 TCCATATGTTCC-ATAGAACATAGGTATACTA
* *
13190 TCCATATATTCCTTAGAACATAGGTATACTA
1 TCCATATGTTCCATAGAACATAGGTATACTA
* * * *
13221 TCCATATGTCTCGAAAG-ACATAGGTAATTCTG
1 TCCATATGT-TCCATAGAACATAGGT-ATACTA
*
13253 TCCATATGTTCCGTAGAACATAGGTATAC
1 TCCATATGTTCCATAGAACATAGGTATAC
13282 CCTCGACTCT
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
31 46 0.65
32 25 0.35
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (31 bp):
TCCATATGTTCCATAGAACATAGGTATACTA
Found at i:17008 original size:3 final size:3
Alignment explanation
Indices: 17002--17032 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
16992 TAATAATATA
17002 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
17033 CTCAAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:19186 original size:7 final size:7
Alignment explanation
Indices: 19176--19202 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
19166 GTATTTTCTT
19176 TTTTTTC
1 TTTTTTC
19183 TTTTTTC
1 TTTTTTC
19190 TTTTTTC
1 TTTTTTC
19197 TTTTTT
1 TTTTTT
19203 GAATTAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:21764 original size:2 final size:2
Alignment explanation
Indices: 21757--21788 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
21747 ATTTAAAAAC
21757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21789 TAATTTCGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27770 original size:15 final size:16
Alignment explanation
Indices: 27730--27773 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
27720 TAGGGTAAGT
*
27730 TTAAAT-TTATAAAGA
1 TTAAATATTAAAAAGA
27745 TTAAATAATTAAAAAGA
1 TTAAAT-ATTAAAAAGA
27762 -TAAATATTAAAA
1 TTAAATATTAAAA
27774 TAATTCATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 13 0.50
16 5 0.19
17 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
TTAAATATTAAAAAGA
Found at i:29121 original size:16 final size:16
Alignment explanation
Indices: 29102--29174 Score: 74
Period size: 16 Copynumber: 4.6 Consensus size: 16
29092 TTCGGGCTGC
*
29102 TTTCAGATCGGGTTAA
1 TTTCAGTTCGGGTTAA
* **
29118 TTTCAGTTTGGGTTGC
1 TTTCAGTTCGGGTTAA
*
29134 TTTCGGTTCGGGTTAA
1 TTTCAGTTCGGGTTAA
* *
29150 TTTCGGTTCGGTTTAA
1 TTTCAGTTCGGGTTAA
*
29166 TTTCGGTTC
1 TTTCAGTTC
29175 AGGATGCTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.12, C:0.14, G:0.27, T:0.47
Consensus pattern (16 bp):
TTTCAGTTCGGGTTAA
Found at i:29166 original size:48 final size:47
Alignment explanation
Indices: 29109--29200 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 47
29099 TGCTTTCAGA
** * *
29109 TCGGGTTAATTTCAGTTTGGGTTGCTTTCGGTTCGGGTTAATTTCGGT
1 TCGGGTTAATTTCAGTTCAGGATGCTTT-GGTTCAGGTTAATTTCGGT
* *
29157 TCGGTTTAATTTCGGTTCAGGATGCTTTGGTTCAGGTTAATTTC
1 TCGGGTTAATTTCAGTTCAGGATGCTTTGGTTCAGGTTAATTTC
29201 TGTTTGAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 15 0.39
48 23 0.61
ACGTcount: A:0.13, C:0.13, G:0.28, T:0.46
Consensus pattern (47 bp):
TCGGGTTAATTTCAGTTCAGGATGCTTTGGTTCAGGTTAATTTCGGT
Found at i:29170 original size:32 final size:32
Alignment explanation
Indices: 29109--29174 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
29099 TGCTTTCAGA
* **
29109 TCGGGTTAATTTCAGTTTGGGTTGCTTTCGGT
1 TCGGGTTAATTTCAGTTCGGGTTAATTTCGGT
* *
29141 TCGGGTTAATTTCGGTTCGGTTTAATTTCGGT
1 TCGGGTTAATTTCAGTTCGGGTTAATTTCGGT
29173 TC
1 TC
29175 AGGATGCTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.11, C:0.14, G:0.29, T:0.47
Consensus pattern (32 bp):
TCGGGTTAATTTCAGTTCGGGTTAATTTCGGT
Found at i:30218 original size:15 final size:16
Alignment explanation
Indices: 30200--30233 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
30190 TATGAACATC
*
30200 AAATAAATTAACAA-A
1 AAATAAAATAACAATA
30215 AAATAAAATAACAATA
1 AAATAAAATAACAATA
30231 AAA
1 AAA
30234 ATAATTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAATAAAATAACAATA
Found at i:31969 original size:25 final size:25
Alignment explanation
Indices: 31821--31963 Score: 261
Period size: 25 Copynumber: 5.8 Consensus size: 25
31811 TGGAAGGGGA
31821 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
31845 TTAGGGTTTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
*
31870 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
*
31895 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
31920 TTAGGGTTTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
31945 TTAGGGTTTGAAACCCTAA
1 TTAGGGTTTGAAACCCTAA
31964 TCTGATGGGT
Statistics
Matches: 116, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
24 6 0.05
25 110 0.95
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAATTGAT
Found at i:32107 original size:3 final size:3
Alignment explanation
Indices: 32099--32159 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
32089 GCAAAAATTG
*
32099 TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32146 TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA
32160 CGGAAAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 4 0.07
3 50 0.93
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:32522 original size:87 final size:87
Alignment explanation
Indices: 32361--32739 Score: 517
Period size: 87 Copynumber: 4.3 Consensus size: 87
32351 CGTCTAAGGG
* * * * * * * * *
32361 TGACATGGCTCCTACGTGATGAGGAAATCTGGTCATTTTTAGGGATGATAACTCGGTTCCTACGT
1 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCA-TCTAAAGG-TGATAACACGGTTCCTACGT
* *
32426 AATGAGGACGACTGGTTATCAGGT
64 GATGAGGACGGCTGGTTATCAGGT
*
32450 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACATGA
1 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
32515 TGAGGACGGCTGGTTATCAGGT
66 TGAGGACGGCTGGTTATCAGGT
32537 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
1 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
32602 TGAGGACGGCTGGTTATCAGGT
66 TGAGGACGGCTGGTTATCAGGT
*
32624 TGACACGGCTCTTACGTGATG-AGAGATCTGGCCATCTAAAGGTGAGGTGATAACTCGGTTCCTA
1 TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCT-AA----AGGTGATAACACGGTTCCTA
* *
32688 CGTGATAAGGACGGCTGGTTATCCTAATGT
61 CGTGATGAGGACGGCTGGTTAT-C--AGGT
*
32718 TGACACGGCTCCTACGTGATGA
1 TGACACGGCTCTTACGTGATGA
32740 GGAAGTCTGG
Statistics
Matches: 264, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
86 16 0.06
87 149 0.56
88 5 0.02
89 30 0.11
91 40 0.15
92 1 0.00
94 23 0.09
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (87 bp):
TGACACGGCTCTTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
TGAGGACGGCTGGTTATCAGGT
Found at i:32557 original size:41 final size:41
Alignment explanation
Indices: 32421--32646 Score: 177
Period size: 41 Copynumber: 5.3 Consensus size: 41
32411 ACTCGGTTCC
* *
32421 TACGTAATGAGGACGACTGGTTATCAGGTTGACACGGCTCT
1 TACGTGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
* * ** * * *
32462 TACGTGATGAAGA-GATCTGGCCATCTAAAGGTGATAACACGGTTCC
1 TACGTGATGAGGACG-GCTGGTTATC---AGGT--TGACACGGCTCT
*
32508 TACATGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
1 TACGTGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
* * ** * * *
32549 TACGTGATGAAGA-GATCTGGCCATCTAAAGGTGATAACACGGTTCC
1 TACGTGATGAGGACG-GCTGGTTATC---AGGT--TGACACGGCTCT
32595 TACGTGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
1 TACGTGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
32636 TACGTGATGAG
1 TACGTGATGAG
32647 AGATCTGGCC
Statistics
Matches: 140, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
40 2 0.01
41 65 0.46
43 8 0.06
44 8 0.06
46 55 0.39
47 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (41 bp):
TACGTGATGAGGACGGCTGGTTATCAGGTTGACACGGCTCT
Found at i:46933 original size:25 final size:25
Alignment explanation
Indices: 46895--47084 Score: 325
Period size: 25 Copynumber: 7.8 Consensus size: 25
46885 CTGGAAGGGA
46895 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
46919 TTAGGGTTTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
*
46944 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
46969 TTAGGGTTTGAAA-CCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
*
46993 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
*
47018 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
47043 TTA-GGTTTGAAACCCT-AATTGAT
1 TTAGGGTTTGAAACCCTAAATTGAT
47066 TTAGGGTTTGAAACCCTAA
1 TTAGGGTTTGAAACCCTAA
47085 TCTGATGGTT
Statistics
Matches: 158, Mismatches: 4, Indels: 7
0.93 0.02 0.04
Matches are distributed among these distances:
23 9 0.06
24 55 0.35
25 94 0.59
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAATTGAT
Found at i:46987 original size:49 final size:50
Alignment explanation
Indices: 46895--47084 Score: 325
Period size: 49 Copynumber: 3.9 Consensus size: 50
46885 CTGGAAGGGA
*
46895 TTAGGG-TTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAAATTGAT
46944 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAA-CCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAAATTGAT
*
46993 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAAATTGAT
*
47043 TTA-GGTTTGAAACCCT-AATTGATTTAGGGTTTGAAACCCTAA
1 TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAA
47085 TCTGATGGTT
Statistics
Matches: 136, Mismatches: 3, Indels: 5
0.94 0.02 0.03
Matches are distributed among these distances:
48 25 0.18
49 68 0.50
50 43 0.32
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (50 bp):
TTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACCCTAAATTGAT
Found at i:47018 original size:74 final size:75
Alignment explanation
Indices: 46895--47090 Score: 346
Period size: 74 Copynumber: 2.7 Consensus size: 75
46885 CTGGAAGGGA
*
46895 TTAGGG-TTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAATTGATTTAGGGTTTGAAACC
1 TTAGGGTTTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACC
46959 CTAAACTGAT
66 CTAAACTGAT
46969 TTAGGGTTTGAAA-CCTAAATTGATTTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACC
1 TTAGGGTTTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACC
47033 CTAAACTGAT
66 CTAAACTGAT
*
47043 TTA-GGTTTGAAACCCT-AATTGATTTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAACTGAT
47091 GGTTGTTGGG
Statistics
Matches: 118, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
73 40 0.34
74 72 0.61
75 6 0.05
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35
Consensus pattern (75 bp):
TTAGGGTTTGAAACCCTAAATTGATTTAGGGTTTGAAACCCTAAACTGATTTAGGGTTTGAAACC
CTAAACTGAT
Found at i:47222 original size:3 final size:3
Alignment explanation
Indices: 47214--47265 Score: 86
Period size: 3 Copynumber: 17.0 Consensus size: 3
47204 CTCAAAATTG
*
47214 TAA TAA TAA TAA TAAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
47260 TAA TAA
1 TAA TAA
47266 ATAACGGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Done.