genome.fa.s8135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008135.1 Hibiscus syriacus cultivar Beakdansim tig00110690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79128

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950--2989	20	2.0	20	85	0	53	30	12	15	42	1.83
5471--5518	23	2.1	23	84	0	60	41	14	16	27	1.87
13796--14365	84	6.8	84	75	9	404	16	30	10	42	1.83
16070--16146	38	2.0	39	89	5	120	35	10	10	44	1.73
20608--20651	19	2.2	20	84	4	54	56	0	0	43	0.99
20617--20658	20	2.2	19	91	4	66	52	0	0	47	1.00
22431--22465	18	1.9	18	88	0	52	25	31	20	22	1.98
31494--31562	30	2.3	30	89	0	102	53	23	4	18	1.62
33192--33245	9	5.8	9	76	8	54	18	25	29	25	1.98
33192--33249	19	3.0	20	92	5	86	18	25	29	25	1.98
33212--33251	9	4.3	9	84	6	53	15	30	30	25	1.95
33248--33305	5	10.8	5	78	14	62	18	51	22	6	1.70
33248--33312	22	3.0	22	100	0	130	18	49	23	9	1.76
33302--33332	7	4.4	7	100	0	62	16	29	29	25	1.96
36081--36241	64	2.5	65	85	7	195	34	18	21	26	1.96
37642--37944	149	2.0	149	98	0	579	27	16	20	35	1.94
39175--39235	23	2.7	23	89	0	95	26	27	26	19	1.99
39710--39773	26	2.4	26	78	14	60	32	10	3	53	1.52
54592--54654	23	2.7	23	97	0	117	20	31	25	22	1.98
54613--54678	19	3.3	19	79	12	53	21	31	30	16	1.95
67704--67752	6	8.5	6	80	17	59	0	12	53	34	1.39
67707--67754	11	4.3	11	75	15	53	0	14	50	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78248--78438	28	6.7	29	83	7	196	43	19	32	3	1.68
78251--78438	29	6.6	28	81	7	184	43	19	33	3	1.68
78339--78429	9	9.2	11	71	24	69	45	17	37	0	1.49
78338--78419	20	4.3	19	72	14	78	45	17	37	0	1.48
78452--78514	18	3.3	18	72	12	54	39	15	34	9	1.80
78727--78773	23	2.1	22	92	7	78	14	31	42	10	1.80

Tables:   1

The End!