Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008136.1 Hibiscus syriacus cultivar Beakdansim tig00110691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1585607
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 9
Found at i:117 original size:19 final size:19
Alignment explanation
Indices: 95--142 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
85 ACTTATGTTT
95 CAAGTAAAACTATCTCAAC
1 CAAGTAAAACTATCTCAAC
**
114 CAAGGGAAACTATCTCAAC
1 CAAGTAAAACTATCTCAAC
*
133 TAAGATAAAA
1 CAAG-TAAAA
143 TGTTTTGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.50, C:0.21, G:0.10, T:0.19
Consensus pattern (19 bp):
CAAGTAAAACTATCTCAAC
Found at i:157 original size:39 final size:39
Alignment explanation
Indices: 116--2408 Score: 2614
Period size: 39 Copynumber: 59.0 Consensus size: 39
106 ATCTCAACCA
* * * *
116 AGGGAAACTATCTCAA-CTAAGATAAAATGTTTTGTTTCA
1 AGGGAAACTATCTCAAGC-GAGATAAAATCTTCTGTTTCG
* * *
155 AGGGAAACTATCTCAAGGGAGGTAAAATCTTCT-TTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
193 AGGGAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
232 AGAGAAAATATCTCAAGCGAGATAAAATATTCTGTTTC-
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
270 ATGCGACACTATCTTAAGCGAGATAAAAACCTCTGTTTCG
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * *
310 ATTGAAACTATCTCAAGGGAGATAAAATCTTCTGTTACG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** * * * **
349 AGGGAAACTAT-TTATAGAAAAACAAAATCTTCGGTTTTA
1 AGGGAAACTATCTCA-AGCGAGATAAAATCTTCTGTTTCG
* *
388 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
427 AGAGAAACTATCTCAAGCGCGATAAAATTTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
466 AGGGAAACTATGTCAAGCGAGATAAAAT-TTTTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
504 AAGGAAACTATCTCAAGCGAG-TAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCG
* * * * * *
543 AGGTAAAATATTTTAAGTGAGATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
582 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
621 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
660 AGGGAAACTATCTCAAGCGAGATAAAATGTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
699 AGGGAAACTATCTCAAGCGATATAAAATCTTCAGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
738 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTCCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
777 AGGAAAATTATCTCAAGTAATATAAAATCTTAAT-TTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* *
816 AGGGAAACGATCTCAAGCGAGATAAAATCATCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
855 AGAGAAACTATCTCAAGCTATATAAGATCTTCAAT-TTTGG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTC--TGTTTCG
* * * ** *
895 TGGAAAAC-ATCTCAAGCAAGGA-AAAATCTTCAATTTCA
1 AGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* *
933 AGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
972 GGGGAAACTATCTCAAACGAGAAAAAATCTTCTTTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1011 AGGGAAACTATCTCAAGCAAGATAAAGAT-TT-TGTTT-A
1 AGGGAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCG
* * * *
1048 AGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1087 TGGGAATCTATCTCTAGCGAGATAATATCTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1126 ATGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
1165 AGGGAAAGTATCTCAAGCGATATAAAATCTTCTGATTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
1204 AGGGAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1243 AGGTAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
1282 AGCGAAACTATCTCAAGCGATATAAAA-CTTCT-ATTCTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-G
* * * * *
1320 AGAGAAACTATATCAAGCGAAATAAAATCTTCTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
1359 AGGTAAACTATCTTAAGCAAGATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
1398 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * *
1437 ACAGAAACAATCTCAAGCGAGATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
1476 ATGGAAATTATCTCAAGCGAGA-CAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1514 AGGG-AACTATCTCAAGCGAAATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1552 AGGGAAACTATTTCAAGCGAGATAAAATCTTTTTTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATC--TTCTGTTTCG
1593 TA-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 -AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1632 AGGGAAACTATCTCAAGCGATATAAGATCTTTTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1671 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1710 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1749 AAGGAAACTATCTGAAGCGAGAAAAAACCTTCTGTTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1788 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
1827 AGGAAAACTATCTCATGCGAGACAAAATCTTCTGTTTAG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1866 AGGGAAACTATCTCAAGCGAGA-AAATATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCG
1905 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
1944 TGAGAAACTATCTCAAGCGAGTTAAAATCTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
1983 AAGGAAACTATCTCAAGAGAGATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2022 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2061 AGGGAAACTATTTCAAGCGAGATAAAATCTTCTGTTTCT
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2100 ATGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2139 AGGGAAACAATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2178 AGGGAAACTATCTCAAGCGAGACAAAATTTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * * *
2217 AGGGAAACTATCTTAAGAGAGGCATAATCTTCTATATCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
2256 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTC-
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2294 AAGGAAACTATCTCAAGCGGGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * * *
2333 ACAGAATCTATATGAAGCGAGA-AAAATTTTATGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * *
2371 AGAAAAACTATCTCAATCGACATAAAAACTTATGTTTC
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC
2409 AAGTAAAACT
Statistics
Matches: 1914, Mismatches: 304, Indels: 72
0.84 0.13 0.03
Matches are distributed among these distances:
36 2 0.00
37 46 0.02
38 223 0.12
39 1584 0.83
40 23 0.01
41 35 0.02
42 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
Found at i:219 original size:19 final size:19
Alignment explanation
Indices: 197--261 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
187 TTTTCAAGGG
197 AAAATATCTCAAGCGAGAT
1 AAAATATCTCAAGCGAGAT
* **** *
216 AAAATCTTCTGTTTCGAGAG
1 AAAAT-ATCTCAAGCGAGAT
236 AAAATATCTCAAGCGAGAT
1 AAAATATCTCAAGCGAGAT
255 AAAATAT
1 AAAATAT
262 TCTGTTTCAT
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (19 bp):
AAAATATCTCAAGCGAGAT
Found at i:376 original size:117 final size:118
Alignment explanation
Indices: 116--20752 Score: 13884
Period size: 117 Copynumber: 176.8 Consensus size: 118
106 ATCTCAACCA
* * * * * **
116 AGGGAAACTATCTCAA-CTAAGATAAAATGTTTTGTTTC-AAGGGAAACTATCTCAAGGGAGGTA
1 AGGGAAACTATCTCAAGC-GAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
179 AAATCTTCT-TTTCAAGGGAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * *
232 AGAGAAAATATCTCAAGCGAGATAAAATATTCTGTTTC-ATGCGACACTATCTTAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** * *
296 AAACCTCTGTTTCGATTGAAACTATCTCAAGGGAGATAAAATCTTCTGTTACG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** * * *
349 AGGGAAACTAT-TTATAGAAAAACAAAATCTTCGGTTT-TAAGGGAAACTATCTCAAGCGAGACA
1 AGGGAAACTATCTCA-AGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
412 AAATCTTCTATTTCGAGAGAAACTATCTCAAGCGCGATAAAATTTTCTGTTTCA
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
466 AGGGAAACTATGTCAAGCGAGATAAAAT-TTTTGTTTCGAA-GGAAACTATCTCAAGCGAGTA-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAG-ACA
* * * * * * *
528 AAATCTTCTGTTTCGAGGTAAAATATTTTAAGTGAGATAAAATCTTCTATTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
582 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG-AGGGAAACTATCCCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
646 AATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATGTTCTATTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
699 AGGGAAACTATCTCAAGCGATATAAAATCTTCAGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * ** * *
763 AATCTTCTGTTCCGAGGAAAATTATCTCAAGTAATATAAAATCTTAAT-TTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* * * * * * *
816 AGGGAAACGATCTCAAGCGAGATAAAATCATCTGTTTCG-AGAGAAACTATCTCAAGCTATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * ** *
880 GATCTTCAAT-TTTGGTGGAAAAC-ATCTCAAGCAAGGA-AAAATCTTCAATTTCA
66 AAACTTC--TGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * *
933 AGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCG-GGGGAAACTATCTCAAACGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
996 AAATCTTCTTTTTCGAGGGAAACTATCTCAAGCAAGATAAAGAT-TT-TGTTT-A
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCG
* * * * * * * * *
1048 AGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG-TGGGAATCTATCTCTAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
1112 TATCTTCTGTTTCAATGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1165 AGGGAAAGTATCTCAAGCGATATAAAATCTTCTGATTCG-AGGGAAACTATCCCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
1229 AATCTTTTGTTTCAAGGTAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
1282 AGCGAAACTATCTCAAGCGATATAAAA-CTTCT-ATTCTG-AGAGAAACTATATCAAGCGAAATA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTC-GAAGGGAAACTATCTCAAGCGAGACA
* * * * * * *
1344 AAATCTTCTATTTTGAGGTAAACTATCTTAAGCAAGATAAAATCTTCTATTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * *
1398 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCGACA--GAAACAATCTCAAGCGAGAT
1 AGGGAAACTATCTCAAGCGAGACAAAATCTT-CTGTTTCGA-AGGGAAACTATCTCAAGCGAGAC
* * * * *
1460 AAAATCTTCTATTTCGATGGAAATTATCTCAAGCGAGA-CAAATCTTCTGTTTCG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1514 AGGG-AACTATCTCAAGCGAAATAAAATCTTCTATTTCG-AGGGAAACTATTTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
1577 AATCTTTTTTGTTTCGTA-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAAC--TTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
1632 AGGGAAACTATCTCAAGCGATATAAGATCTTTTATTTTG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
1695 AAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1749 AAGGAAACTATCTGAAGCGAGAAAAAACCTTCTGTTTTG-AGGGAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
1813 AATCTTCTATTTCGAGGAAAACTATCTCATGCGAGACAAAATCTTCTGTTTAG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
1866 AGGGAAACTATCTCAAGCGAGA-AAATATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATA
1 AGGGAAACTATCTCAAGCGAGACAAA-ATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
1929 AAATCTTCTGTTTCGTGAGAAACTATCTCAAGCGAGTTAAAATCTTCTGTTTCA
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
1983 AAGGAAACTATCTCAAGAGAGATAAAATCTTCTATTTCG-AGGGAAACTATCACAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
2047 AATCTTCTATTTCGAGGGAAACTATTTCAAGCGAGATAAAATCTTCTGTTTCT
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2100 ATGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG-AGGGAAACAATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
2163 AAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATTTTCTATTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
2217 AGGGAAACTATCTTAAGAGAGGCATAATCTTCTATATCG-AGGGAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
2281 AATCTTCTGTTTC-AAGGAAACTATCTCAAGCGGGAAAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * * * ** * * *
2333 ACAGAATCTATATGAAGCGAGA-AAAATTTTATGTTTCG-AGAAAAACTATCTCAATCGACATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * ** * * * ** *
2396 AAACTTATGTTTCAAGTAAAACTATATCAACCAAGGGAAACTATCTCAACTAAGATAAAATATTT
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA--ATCT--TCT--G--------TTT
*
2461 TG
117 CG
**** * * ** *
2463 TTTCAAGGGAAATATCTCAAGGGAGGTAAAATCTTCT-TTTC-AAGGGAAAATATCTCAAGCGAG
1 -AGGGA---AACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAG
* * * * *
2526 ATAAAATCTTCTGTTTCGAGAGAAAATATCTCAAGCGAGATAAAATATTCTGTTTC-
62 ACAAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * ** * *
2582 ATGCGACACTATCTCAAGCGAGATAAAAACTTCTGTTTCG-ATTGAAACTATCTCAAGGGAGATA
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
2646 AAATCTTCTGTTACGAGGGAAACTATCT-ATAGCAAAAACAAAATCTTCTGTTTTG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCA-AGC-GAGATAAAATCTTCTGTTTCG
* * * * *
2701 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTATTTCG-AGAGAAACTATCTCAAACGCGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * *
2765 AATTTTCTGTTTCAAGGGAAACTATGTCAAGCGAGATAAAAT-TTTTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
2817 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG-AGGTAAAATATTTTAAGTGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * * *
2881 ATTCTTCTGTTTCGAGGGAAACTATCCCAAGCTAGACAAAATCTTCTATTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
2934 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG-AGGGAAACTATCCCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
2998 AATCTTCTGTTTCGAGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3051 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * *
3115 AATGTTCTATTTCGAGGGAAACTATCTCAAGCGATATAAAATCTTCAGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** * *
3168 AGGGAAACTATCTCAAGCGAGATAAAATCTTCGGTTCCG-AGGAAAATTATCTCAAGTAATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
3232 AATCTTAAT-TTTCGAGGGAAACGATCTCAAGCGAGATAAAATCATCTGTTTCG
66 AAACTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** * ** * *
3285 AGAGAAACTATCTCAAGCTATATAAGATCTTCAATTTTGGTGGAAAAC-ATCTCAAGCAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * *
3348 AAATCTTCAATTTCAAGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
3402 GGGGAAACTATCTCAAACGAGAAAAAATCTTCTTTTTCG-AGGGAAACTATCTCAAGCAAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** * * * *
3466 AATA-TTTTGTTTAAAGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
3519 TGGGAATCTATCTCTAGCGAGATAAAATCTTCTGTTTC-AATGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
3583 AATCTTCTGTTTCGAGGGAAAGTATCTCAAGCGATATAAAATCTTCTGATTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3636 AGGGAAACTATCCCAAGCGAGACAAAATCTTTTGTTTC-AAGGTAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
3700 AATCTCCTGTTTCGAGCGAAACTATCTCAAGCGATATAAAATCTTCT-ATTCTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-G
* * * * * * * * * *
3753 AGAGAAACTATATCAAGCGAAATAAAATCTTCTATTTTG-AGGTAAACTATCTTAAGCAAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
3817 AATCTTCTATTTCGAGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * * * * *
3870 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTATTTTG-AGGGAAATTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
3934 AATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAAATAAAATCTTCTATTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
3987 AGGGAAACTATTTCAAGCGAGATAAAATCTTTTTTGTTTCGTA-GGAAACTATCTCAAGCGAGAT
1 AGGGAAACTATCTCAAGCGAGACAAAATC--TTCTGTTTCGAAGGGAAACTATCTCAAGCGAGAC
* * * * * * *
4051 AAAATCTTCTGTTTCGAGGGAAAATATCTCAAGCGATATAAGATCTTTTATTTTG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
4106 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
4169 AAATCTTCTGTTTCGAAGGAAACTATCTGAAGCGAGATAAAATCCTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** ** * ** * *
4223 AGGGAAACTATCTCAAGCGATATAGGATCTTCAATTTTGCTGGAAAAC-ATCTCAAGCAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** * * * *
4286 AAATATTCAATTT-AAGGGAAAATTATCTCAAGCGAGACAAAATCATCTGTTTCG
66 AAA-CTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
4340 AAGGAAACTATCTCAAACGAGAAAAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGATATA
1 AGGGAAACTATCTCAAGCGAG-ACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
4404 AAATA-TTTTGTTTCAAGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * * * *
4458 TGGGAATCTATCTCAAATGACATAAAATCTTCTGTTTC-AACGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * * * *
4522 ACTCTTCTGTTTCGAAGGAAAGTATCTCAAGCGATATAAAATCCTCTGATTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4575 AGGGAAACTATCCCAAGCGA-ATCAAAATCTTTTGTTTC-AAGGGAAACTATCTCAAGCGAGA-T
1 AGGGAAACTATCTCAAGCGAGA-CAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
4637 AAAA--TCTGTTTCGAGGGAAACTATCTCAAGCGATATAAAATCTTCTATTTTG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * *
4689 AGAGAAACTATATCAAGCGAAATAAAATCTTCTGTTTTG-AGGTAAACTATCTTAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
4752 AAATCTTCTTTTTCGAGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * * * * *
4806 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTGTTTCGAA-GGAAACAATCTCAAGCGAAATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * ** * * * ** *
4870 TATCATCAATTTTGAGGGAAAAC-ATCTCAAGCAAGAAAAAATCTTCAATTTCA
66 AAACTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
4923 AGCGAAACTATCTCAAGCGAGAC-AAATTTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
4985 AAATCTTCTGTTTCGAGGGAAACAATCTCAAGCGAGATAAAATATTTTGTTTCA
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * * * *
5039 ATTGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCG-TGGGTATCTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
5103 AATCTTCTGTTTCTAGGGAAACTATCACAAGCTAGATAAAATCTTCTGTTTTGG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
* * * * ** * * *
5157 AGGGAAAGTATCTCAGGCAAGATAAAAAAATTCTGTTTC-AAGGGAAACTATCTCAAGCCATATA
1 AGGGAAACTATCTCAAGCGAGA-CAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
5221 AAATCTTCTATTTCGAAGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * *
5274 ATAAGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTCCG--TGGAAACTATCTCAAGCGAGA-A
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
5335 AAAATCTTATATTTCGAGGG--A--AT-T-AAGCGAGATAAAATCTTCTGTTTCA
65 AAAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
5384 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG-AGGGAAA-TAATCTCAAGCGTGACA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACT-ATCTCAAGCGAGACA
* * *
5447 AAATCTTCTGTTTCGAGGGTAACTATCTCAAGCGAGATAAAATCTTCTGTTTTG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * * * * * *
5501 AGAAAAACTATCTCAAACGAGACCAAATCATATGTTTC-AAGGGAAACTATATTAAACAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * **
5564 AAATCTTCTGTTTCGAGGGAAGCTATCTGAAGCGAGAAAAAAAATTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * *
5618 ATGAAAACTATCTCGAGCGAAATAAAATCTTCTGTTTCG-AGAGAAACTATCTCAA-CCA-AGAG
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
**** ** * * **** * ** ****
5680 AAACTATCTCAACCGAGATAAAATATTTTGTTTC-AAAGGAAA-CTATCTCAAGCG
66 AAACT-TCTGTTTCGAGGGAAACTA-TCTCAAGCGAGATAAAATCT-TCTGTTTCG
* * ** **
5734 AGGTAAAATCT-TCTGTTTCAAG-G-GA-AAATATC-TCAAG---CG-AGATAAAATCT-TCTGT
1 AGG-GAAA-CTATC----TCAAGCGAGACAAA-ATCTTC-TGTTTCGAAG-GGAAA-CTATCTCA
** **** * ** * **** ** ****
5789 TTCGAG--AAAAA-TATCTCAAGCAAGATAAAATATTCTGTTTC-ATG-GGAAA-CTATCTCAAG
56 AGCGAGACAAAAACT-TCTGTTTCGAGGGAAACTA-TCTCAAGCGA-GATAAAATCT-TCTGTTT
5848 CG
117 CG
** * * * ** **
5850 AGATAAA--ATCTTC-TGTTCGATTGA-AACTATC-TCAG----G-AGATAAATCT-TCTGTTA-
1 AGGGAAACTATC-TCAAG--CGA--GACAA-AATCTTCTGTTTCGAAGGGAAA-CTATCT-CAAG
** **** * ** * ** ** ****
5903 CGAG--TGAAACTATCTCAAGCAAGACAAA--ATCTTATATTTTGAG-GGAAA-CTATCTCAAGC
58 CGAGACAAAAACT-TCTGTTTCGAGGGAAACTATCTCA-A--GCGAGATAAAATCT-TCTGTTTC
5962 G
118 G
** ** * * **** *** * * *
5963 AGACAAAAGCT-TCT-ATTTCGAGA-GAAATTTTCTGAAGAGAGATAAAATATTATGTTTCAAGG
1 AG-GGAAA-CTATCTCA-AGCGAGACAAAATCTTCTGTTTCGA-AGGGAA-ACTA--TCTCAAGC
* ** *** * * *
6025 GAAACTATCTCAAGCGAGA-TAAAATGTTAT-GTTTTGAAGGA-AACTATCAAGCGAGAAAAAAT
59 GAGAC-A----AA---A-ACT--TCTGTT-TCG-AGGGAA--ACTA-TCTCAAGCGAGATAAAAT
6087 CTTCTGTTTCG
108 CTTCTGTTTCG
* * * * * * *
6098 AGGTAAAATATCTTAAGTGAGATAAATTCTTCTGTTTCG-AGGGAACCTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
6162 AATA-TTCTATTTCGAGGGAAACTATC-CAAGCAAGACAAAATCTTCTGTTTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
6214 AGGGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
6278 AATCTTCTGTTTCGAGAGAAACTATATCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * * *
6331 AGGGAAACTATCTTAAGCGAGATAAAATCTTCTATTCCG-AGGAAAATTATCTAAAGCAATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
6395 AATCTTAAT-TTTAGAGGGAAACGATCTCAAGCGAGATAAAATCCTCTGTTTCG
66 AAACTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * ** * ** * *
6448 AGGGAAACTATCTCAAGCGATATAAGATCTTCAATTTTGGTGGAAAAC-ATCTCAAGCAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * * *
6511 AAATCTTCAATTTCAAGGGAAACTATCTCAAGCGACACAAAATCATCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
6565 AGGGAAACTATCTCAAACGAGAAAAAATCTTTTGTTTCG-AGGGAAACTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
6629 AATA-TTTTGTTTCAAGTGAAACTATCTCAAGCAAGATAAAATCTTATGTTTTG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** * * *
6682 TGGGAATTTATCTCAAGCGAGATAAAATCTTCTGTTTC-AACGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
6746 TATCTTCTGTTTCGAGGGAAAGTATCTCAAGC-A-ATATAAATATTCAGTTTC-
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATA-AAATCTTCTGTTTCG
* * * * *
6797 ATTGGAAAATATCTCAAGCGAGATAAAATCTTTTGTTTCG-AGGGAAACTATCTCAAAG-GAGAT
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTC-AAGCGAGAC
* * * * * * * *
6860 AAAATCATATGTTTTGAGGGAAACTATCTCAAGTGAGACAAAATCTTCTATTTTG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** ** *
6915 AGAGAAA-TCATCTCAAGCGAGACAAAATATTCTGTTTCG-AGTAAAACTATCTTTAGCGAGATA
1 AGGGAAACT-ATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
6978 AAATA-TTTTGTTTCAAGAGAAACTATCTCGAGCGAGATAAAATCTTCTTTTTTG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
7032 AGGGAAAATATCTCGAGCGAGA-AAAAACATTTTGTTTC-AAGGGAAACTATCTCAA-CAAGATA
1 AGGGAAACTATCTCAAGCGAGACAAAATC-TTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
7094 AAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTTC-
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
*
7148 AGGGAAACTATCTCAAGC--GACAAAATCTCTTCTGTTTCG-AGGGAAACGATCTCAAGCGAGAC
1 AGGGAAACTATCTCAAGCGAGACAAAA--TCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGAC
** * * * *
7210 AAACTCTTCAGATTCGAGAGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
7265 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTTG-AGGGAAACTATCTTAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
7329 AATA-TTTTGTTTCGTA-TGAAAATATCTCAAGCGAGATAAAATCTTCTGTCTCG
66 AA-ACTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
7382 ATGGAAACAATCTCAAGCGATATAAGATCTTCTATTTTC--AGGGAAACTATCTCAAGCGAGA-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCT-GTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
7444 AAAATCTTCTATTTCGTGTGAAATTATCTCAAAGCGAGATAAAATCTTATGTTTCA
65 AAAA-CTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCG
* * * * *
7500 AAGGAAACTATCTCAAGCGAGGA-AAAATCTTCTGTTTCG-AGTGAAACAATCTCAAGAGAGAGA
1 AGGGAAACTATCTCAAGCGA-GACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* *
7563 AAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * *
7617 AGGTAATA-TATCTCAAGCAAGAAAAAATCTTCTGTTTTG-AGGTAAAATATCTTAAGTGAGATA
1 AGGGAA-ACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
** * * * * *
7680 AATTCTTCTATTTCGAGGGAAACTATCACAAGTGAGA-AACAATTTTCTGTTTTG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCG
* * * * * *
7734 AGGAAAACTATCTCAAGCGACATAAAATCTTCTGTTTCG-AGGGAAACTATCTTAACCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
7798 AATA-TTTTGTTTCAAGGGAAACTATCTCAAGCGATG-TAAAATCTTTTGTTTCT
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * * *
7851 ATGGTAAA-TATCTTAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTAACTCAAGCGAGA-A
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * ** *
7913 AAAATCTTCTGTTTCGAGTGAAACAATCTCAAAAGAGAAAAAATCTTCTGTTTCG
65 AAAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
7968 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG-AGGTAATCTATCTCAAGCAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * * *
8031 AAATCTTCTATTTTGAGGTAAAATATCTTAAGTGAGATAAATTCTTCTATTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
8085 AGGGAAACTATCACAAGTGAGA-AACAATTTTATGTTTTG-AGGAAAACTATCTCAAGCGACATA
1 AGGGAAACTATCTCAAGCGAGACAA-AATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * *
8148 AAATCTACTATTTCGAGGGAAACTATCTCAACCGAGATAAAATCATCTATTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
8202 AGGGAAACTATCTCAAGCAATATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
8266 AATCTTCTGTTTTGAGGGAAACTATCTCAAGCGAGATAAAATCTTCT-ATTCTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-G
* * ** * * ** * * * *
8319 AGGAAAACTATCTTAAGTAATATAAAATCTTAAGTTTCG-AGGGAAACGATCTCTACCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * ** *
8383 AATCCTCAGTTTCGAGGGAAACTATCTCAAGCGATATAAGATCTTCAATTTTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
8436 AGGGAAAC-ATCTTAAGCGAGAAAAAATCTTCAATTTC-AAGAGAAACTTTCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * *
8498 AAATCTTCTGTTTTGAGGGAAACTATCTAAAGCTATATAAAATAATTC-ATTTCA
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAAT-CTTCTGTTTCG
* * * * * * * *
8552 AGTGAAACTATCTCAAGCAAGATAAATTCTTATGTTTCG-TGGGAATCTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
8616 AATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** * * * * * *
8669 AGGGAAAGTATCTCAAGTAAGATAAAATATTCTATTTC-AAGGCAAACTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
8733 AATCTTCTATTTCGAGAGAAACTATCTCAAGCGAGATAAAATATTTTGTTTC-
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
8785 ATTGGAAACTATCTCAAGCGAGATAAAATCTTCAGTTTC-ATGGGAAATTATCTCAAGCGAGATA
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* *
8849 AAATA-TTTTGTTTCGAGGGAAACTATCTCAAAG-GAGATAAAATCTTCTGTTTTG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
8903 TGGGAAACTATCTCAAGCAAGACAAAATATTCTATTTTG-AGAGAAACTATCTCATGCCAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** * *
8967 AATCTTCTGTTTCGAGGGAAACTATCTTTAGCGAGATAAAATATTTTGTTTC-
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
9019 AAGGAAAATATCTCAAACGAGATAAAATCTTCTGTTTCGAA-GGAAACTATCTCAAGCAAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
9082 AAATCTTCTGTTTCGAGGGAAAATATCTCAAGCGAGAAAAAATCTTCTGTTTCA
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
9136 AGGAAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
9200 AATA-TTTTATTTCGAGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCA
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
9253 AGGGAAACTATCTCAAGCGAGAAAAAATC-TCTGTTTCGAA-GGAAACTATCTGAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
9315 AAATCTTCTGTTTTGAAGGAAACTATCTGAAGCGAGAAAAAACCTTCTGTTTTG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
9369 AGGGAAACTATCTCATGCGAGACAAAATCTTCTGTTTAG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * **
9432 ATATCTTCTTTTTCGAGGGAAAATATCTCAAATGAGATAAAATCTTCTGTTTCG
66 A-AACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
9486 TGAGAAACTATCTCAAGCGAAATAAAATCTTCTATTTCG-AGGGAAACTATCCCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
9550 AATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
9603 AGGGAAACTATCTCAAGCGATATAAAATCATCTATTTAG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * ** * *
9667 AATCTTTTGTTTCAATGGAAACTATCTTTAGTGAGATAAAATCATCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
9720 AGGGAAATTATCTCAAGCGATATAAAATCTTCTGATTCG-AGGGAAACTATCCCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
9784 AATCTTTTGTTTCAAGGGAAACTATCCCAAGCGAGATAAAATCTCCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
9837 AGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
9901 GATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** * * * * * *
9954 ATGGAAACTATCTTTAGTGAGATAAAATCATCTGTTTCG-AGGGAAATTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * *
10018 AATCTTTTGATTCGAGGGAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
10071 AGGGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG-AGGGAAACTATCTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * ** * * *
10135 AATCTTCTATTTTGAGACAAACTATATCAAGCGAAATAAAATCTTCTGTTTTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * * *
10188 AGGTAAACTAT-TGTAAGCGAGATAAAATCTTCTATTCCG-A-GAAAACTATCTCAATCAATATA
1 AGGGAAACTATCT-CAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
10250 AAATCTTAAT-TTTCGAGAGAAACGATCTCAAGCGAGATAAAATCTTATGTTTCG
65 AAAACTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** * * *
10304 AAGGAAA-TAATCTC-AGACGATATAATACCTTCAATTTTGACGGAAAAC-ATCTCAAGCGAGA-
1 AGGGAAACT-ATCTCAAG-CGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGAC
** * * * * *
10365 AAAAATCTTCAATTTCAAGCGAAACTATCTCAGGCGAGACAAAATTTTCTGTTT-G
64 AAAAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
10420 AGGGAAACTATCTCAAGCGATAAAAAATCTTCAGTTTCG-AGGGAAACAATCTCAAACGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * ** *
10484 AATA-TTTTGTTTCAATTGAAACTATCTCAAGAC-AGATAAAATCTTCTGATTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAG-CGAGATAAAATCTTCTGTTTCG
* * * * * * * * *
10537 TGGGTATCTATCTCAAGCGAGATAAAATCATATGTTT--ATAGGGAAACTATCACAAGCTAGATA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGA-AGGGAAACTATCTCAAGCGAGACA
* * * * * *
10600 AAATCTTCTGTTTTGGAGGGAAAGTATCTCAAGCAAGATAAAGCA-ATTCTGTTTCA
65 AAAACTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAA--ATCTTCTGTTTCG
* * * * * ** * *
10656 AGGGAAACTATCTCCAA-CCATATAAAATCTTCTATTTCG-ATGGAAACTATCAGAAGAGAGATA
1 AGGGAAACTATCT-CAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
** * *
10719 AAGTCTTCTGTTTC-ATGTGAAACTATCTCAAGCGAGA-AAAATCTTTTGTTTCG
65 AAAACTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
10772 ATGGAAACTATCTCAAGCGAGAAAAAATCTTATATTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
10836 AATCTTCTGTTTCGAAGGAAACTATCTCAAGCGA-AAAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
10888 AGGGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCG-AGGGAAACTATCACAAGCAAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * ** * * * * *
10952 AATCTTCTGTTTCAAGAAAAACTATCTCAAACGAGACAAAATATTCTATTTCA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
11005 AGGGAAACTATATCAAGCAAGAAAAAATATTCGGTTTCG-AGGGAATCTATCTGAAGCGAGAAAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
11069 AAATTTCCGTTTCGATGGAAACTATCTCAAGCGACATAAAATCTTATGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * **** ** * * *
11122 AGGGAAACTATCTCAACCGAGA-GAAA-CTATCTCAACCG-AGATAAAATATTTTGTTTCAAGGG
1 AGGGAAACTATCTCAAGCGAGACAAAATCT-TCTGTTTCGAAGGGAAACTA-----TCTCAAGCG
* ** * ** * * *
11184 AAACTATCTCAAGCGAGGTAAAATCTTCTATTTCAAGGAAAATATCTCAAGCGAGTTAAAATCTT
60 --A-GA---CAA---A---AACTTC-TGT-TTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT
11249 CTGTTTCG
111 CTGTTTCG
* * * * * * * * * *
11257 AGAGAAAATATCTCATGCGAGATAAAATATTTTGTTTC-ATGGGAAACTATCTCAAGCAAAATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** * * *
11321 AATCTTCTGTTTCGATTGAAACTATCTCAAGCAAGACAAAATCTTCTATCTT-G
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGT-TTCG
* * *
11374 AGGGAAACTATCTCAAGCGAGACAAAA-CTTCTATTTCG-AGAGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * **
11437 AATA-TTTTGTTTCAAGTTAAACTATCTCAAGCGAGGA-AAAATCTTCTGTTTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
** * * * * * *
11490 AGCTAAAATATCTTAAGTGAGATAAATTCTTCTGTTTCG-AGGAAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
11554 AATA-TTCTATTTCGAGGGAAACTATCCCAAGCAAGACAAAATCTTCTATTTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
11607 AGGGAAACAATCTCAAGCGACATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAA--GAGATAT
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
11669 AAA--TC-G-TT-G-GGAGAAA-TA--TCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGG-GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
11714 AGGGAAACTATCTCAAGCGAG-----AT-ATCTGTTCCG-AGGAAAATTATCT----C-ATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
11767 AATCTTAAT-TTTTGAGGGAAA-TGATCTCAAGCGAGATAAAATCCTCTGTTTCG
66 AAACTT-CTGTTTCGAGGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * ** *
11820 AGGGAAACTATCTAAAGCGATATAATATCTTCAATTTTG--GTGGAATAC-ATCTCAAGCGAGA-
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAG-GGAA-ACTATCTCAAGCGAGAC
* ** * * * * *
11881 AAAACTCTTCAATTTCAAGGGAAATTATCCCAAGCGAGACAAAATCATCTGTTTCG
64 AAAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * ** **** ** * * ****
11937 AGGGAAAAAATCTTC-TGTTTCGAG-GGAAA-CTATCTCAAGCG-AGATAAAATATTTTGTTTC-
1 AGGGAAACTATC-TCAAG---CGAGACAAAATCT-TCTGTTTCGAAGGGAAACTA-TCTCAAGCG
*** **** * ** * * * ** ****
11997 A-AGTGAAACTATCTCAAGCAAGATAAA--ATCTTATGTTTCGTG--GGAATCTATCTCAAGCG
60 AGACAAAAACT-TCTGTTTCGAGGGAAACTATCTCAAG---CGAGATAAAATCT-TCTGTTTCG
** * ** * ***
12056 AGATAAAATCT-TCTGTTTCAA-CGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTTGAGGG
1 AG-GGAAA-CTATC----TCAAGC-G--A-GA---CAA---A-AT--CTTC-TGT-TTCGAAGGG
** * * ** * * * *
12119 AATGTATCTCAAGCAAGATAAAATA-TTCAATTTCAAGGGAAAGTATCTCAAGTG-GTAAAAAAT
45 AAACTATCTCAAGCGAGACAAAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-ATAAAAT
* *
12182 ATTCTATTTCG
108 CTTCTGTTTCG
* * * * ** * *
12193 AGAGAAACTATCTCAAGCGAGATAAAATATTCAGTTTC-ATTGGAAAATATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
12257 AATCTTTTGTTTCGAGGGAAACTATCTCAAAG-GAGATAAAATCATATGTTTTG
66 AAACTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCG
* * * * *
12310 AGGGAAACTATCTCAA-CTGAGACAAAATATTCTATTTTG-AGAGAAACCATCTCAAGCGAGACA
1 AGGGAAACTATCTCAAGC-GAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* ** ** * * * *
12373 AAATCTTCTGTTTCGAGTAAAACTATCTTTAGTGAGATAAAATATTTTGTTTCA
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
12427 AGGAAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG-AGGGAAAATATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
12490 AAATCTTTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
12544 AGGGAAACTATCTCAAGCGAGACAAAATCTTCAGTTTTC--AGGGAAACTATCTCAAGCGAGA-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTG-TTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
12606 AAACTCTTCTGATTCGAGGGAAACGATCTCAAGCGAGACAAAATCTT-TAGATTCG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCT-GTTTCG
* * * *
12661 AGGGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCG-AGGGAAACTATCACAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
12725 AATCTTTTGTTTCGTA-TGAAACAATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
12778 AGGGAAACTATCTCAAGCGATATAAGATCTTCTATTTTG-AGGGAAACTATCTCAAGCGATA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
12841 AAATCTTCTATTTCGAGTGAAACTATTTCAAGCGAGATAAAATCTTATGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
12895 AAGGAAACTATCTCAAGCGAGAAAAAATCTTATGTTTCGAA-GGAAACTATCTCAATCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
12958 AAATCTTCTGTTTCGAGTGAAA-TAATCTCAAGAGAGAAAAAATCTTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
13012 AGTGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
13075 AAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** *
13129 AGGGAATCTATCTGAAGCGAGA-AATAATTTTATGTTTCG-AGGAAAACTATCTCAAGCGTCATA
1 AGGGAAACTATCTCAAGCGAGACAA-AATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
13192 AAATCTTCTGTTTCGAGGGAAACTATCTCCACCGAGATAAAATATTTTGTTTC-
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** *
13245 ATGGAAAACTATCTCGAGCGAGGTAAAATCTTCTGTTTC-AAGGGTAAA-TATCTCAAGCGAGAT
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGG-AAACTATCTCAAGCGAGAC
* *
13308 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
13363 TA-GGAAACTATCTCAAGCGAGATAAAATCTTCTAG-TTCG-AGGGAAACTATCTCAAGCGATAT
1 -AGGGAAACTATCTCAAGCGAGACAAAATCTTCT-GTTTCGAAGGGAAACTATCTCAAGCGAGAC
* * * * * * *
13425 AAGATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGAAAAAATATTCTATTTCG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
13480 AGGGAAACTATCTCAAGCGAGATAAAATCTTATGTTTTGAA-GGAGACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * *
13544 AATTTTCAGTTTCAAGGAAAACTATCTCAAGCGAGATAAAATC-TCATGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC-TGTTTCG
** * * * * *
13597 AGGGAAACTATCTCAAATGAGAAAAAAACTACTGTTTTG-AGGGAAACTACCTCAAGC-ACGACA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGA-GACA
** * * * * * *
13660 AAATTTTCTATTTTGAGAGAAACCATCTCAAGCGAGACAAAATCTTATGTTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * ** * * * * * *
13714 ATTGAAACTTTCTTTAGCGAGATAAAATATTTTATTTC-AAGGGAAACTATCTCAAGCTAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * **
13778 AATCTTCTGTTTCGAGGGAAAATATCTCAAG-TATGAAAAAATCTTTTGTTTTA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * *
13831 AGAGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
13895 AATCTTCTGTTTTC-AAGGAAACTATCTCAAGCGAGA-AAAACTCTTCTGTTTCG
66 AAACTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTCG
* * * * * *
13948 AGGGAAACGATCTCAAGCTAGACAAAATCTT-TAGATTCG-ATGGAAACTATCCCAAGCGAGATA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCT-GTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
14011 AAATCTTCTGTTTCGAGTGAAACTATCACAAGCGAGACAAAATCTTCTATTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * *
14065 AGGGAAACTATCTCAAGTGAGATAAAATCTTTTCTTTC-ATA-TGAAACTGTCTCAAGCGAGATA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGA-AGGGAAACTATCTCAAGCGAGACA
* * * * * *
14128 AAATA-TTCTGTTTCGAGAGAAACTATCTCAAGCGATATAAGATATTCTATTTTG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
14182 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGAGAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
14246 AATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * ** * * *
14299 AGGGAAACTATCTCAAGCGATATAAAATCTTCTATTTTG-AGACAAACTATATCAAGCGAAATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * *
14363 AATCTTCTGTTTTGAGGTAAACTATCTTAAGCGAGATAAAATCTTCTATTCCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * * *
14416 A-GAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG-TGAGAAACGATCTCAAGCGAGATA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTT-CTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * *
14478 AAATCTTATGTTTCGAAGGAAA-TAATCTCAAGCGAGACAAAATTTTCTGTTTCG
65 AAAACTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
14532 AGGGAAACTATCTCAAGCGATAAAAAATCTTCAGTTTCG-AGGGAAACAATCTCAAACGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * ** *
14596 AATA-TTTTGTTTCAATTGAAACTATCTCAAGAC-AGATAAAATCTTCTGATTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAG-CGAGATAAAATCTTCTGTTTCG
* * * * * * * * * *
14649 TGGGTATCTATCTCAAGCGAGATAAAATCATATGTTTC-TAGGGAAACTATCACAAGCTAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * ** *
14713 AATCTTCTGTTTTGGAGGGAAAGTATCACAAGCAAGATAAAAAATTCTGTTTCA
66 AAACTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * ** *
14767 AGGGAAACTATCTCCACCCATATAAAATCTTCTATTTCG-ATGGAAACTATCGGAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** *
14831 AGTCTTCTGTTTC-ATGTGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
14883 AGGGAAACTATCTCAAGCGAGAAAAAATCTTATATTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
14947 AATCTTCTGTTTCGAAGGAAACTATCTCAAGCGA-A-AAGAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCG
* * *
14999 AGGGAAA-TAATCTCAAGC-A-AGATAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCAAGACA
1 AGGGAAACT-ATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* ** * * * *
15060 AAATCTTCTGTTTCGAGAAAAACTATCTCAAACGAGACAAAATATTCTGTTTCA
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * * * *
15114 AGGGAAACTATATCAAGCAAGAAAAAATATTCGGTTTCG-AGGGAATCTATCTGAAGCGAGAAAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
15178 AAATTTCGGTTTCGATGGAAACTATCTCAAGCGACATAAAATCTTATGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *** ** * * ****
15231 AGGGAAAATATCTCAACCGAGA-GAAA-CTATC-GCAAC-AGAGATAAAATATTTTGTTTC-A-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCT-TCTGTTTCGA-AGGGAAACTA-TCTCAAGCGAGA
*** **** * * * *
15290 GGGAAACTATCTCAAGCGAGGTAAAATCTTATATTTCAAG-G-GA-AAATATC-TCAG--GCG
63 CAAAAACT-TCTGTTTCGAGG-GAAA-C---TATCTCAAGCGAGATAAA-ATCTTCTGTTTCG
** **** * * ** * ** * ****
15347 AGTTAAAATCT-TCTGTTTCGAGAGAAAAT-ATCTCATGCG-AGATAAAATATTCTGTTTC-ATG
1 AG-GGAAA-CTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTA-TCTCAAGCGA-G
** **** * *** **** * * *****
15408 --GGAAACTATCTCAAGCAAAATAAAATCT-TCTGTTTCGA-TTGAAA-CTATCTCAAGGG
62 ACAAAAACT-TCTGTTTC-GAGGGAAA-CTATCTCAAGCGAGATAAAATCT-TCTGTTTCG
** * ** ** **** ** * * **
15464 AGATAAAATATTCTTTTA-CGAG-GGAAA-CTATCTCAAGC-AAGACAAA--ATCTTCTATCTTG
1 AGGGAAACTA-TC-TCAAGCGAGACAAAATCT-TCTGTTTCGAAGGGAAACTATC-TCAAGCGAG
*** **** ** ** *
15523 AGGGAAACTATCTCAAGCGAGACAAAACT-TCT-ATTTCGAGAGAAACTATCTCAAGCGAGATAA
62 ACAAAAACT-TCTGTTTCGAG-GGAAACTATCTCA-AGCGAGATAAA--ATCT---------T--
* * *
15586 AATATTTTG
111 -CTGTTTCG
**** ** * ** ** * * *
15595 TTTCAAGTTAAACTATCTAAGCGAGGAAAAATCTTCTGTTTCG-AGCTAAAATATCTTAAGTGAG
1 AGGGAAACT--A-TCTC-AAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAG
* ** * * * * *
15659 ATAAATTCTTCTGTTTCGAGGAAAACTATCTCAAGCGATACAAAATATTCTATTTCG
62 ACAAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
15716 AGGGAAACTATCCCAAGCAAGACAAAATCTTCTATTTCG-AGGGAAACAATCTCAAGCGACATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
15780 AATCTTCTGTTTCGAGGGAAACTATCTCAAGAGATATAAAATATTCTGTTTGG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
15833 AGAGAAACTATATCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * * *
15897 AATCTTCTGTTCCGAGGAAAATTATCTCAAGCAATATAAAATCTTAAT-TTTTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* * * *
15950 AGGGAAA-TGATCTCAAGCGAGATAAAATCCTCTGTTTCG-AGGGAAACTATCTCAAGCGATATA
1 AGGGAAACT-ATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * * * ** *
16013 ATATCTTCAAT-TTTGGTGGAAAAC-ATCTCAAGCGAGA-AAAACTCTTCAATTTCA
65 AAAACTTC--TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTCG
* * ** *** *** *
16067 AGGGAAACTATCCCAAGCGAGACAAAATCATCTGTTTCG-AGGGAAAAAATCTTTTGTTTCGACG
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAG-CGAGACA
* * *** ** * * **** * * **** *
16131 GAAGCTATCTCAAGT-GAGATAAAATATTTTGTTTCAAG-TGAAA-CTATCTCAAGCA
65 AAAACT-TCT-GTTTCGAGGGAAACTA-TCTCAAGCGAGATAAAATCT-TCTGTTTCG
** * * * ** **** ** ****
16186 AGATAAA--ATCTTATGTTTCGTG--GGAATCTATCTCAAGCG-AGAAAAAATCT-TCTGTTTC-
1 AGGGAAACTATCTCAAG---CGAGACAAAATCT-TCTGTTTCGAAG-GGAAA-CTATCTCAAGCG
* **** ** * * ** * * **** *
16244 A-ACAGAAACTATCTCAAGCGAGATAAA--ATCTTC-GGTTTTGAGGGAAAGT-ATCTCAAGCA
60 AGACAAAAACT-TCTGTTTCGAGGGAAACTATC-TCAAG---CGAGATAAAATCTTCTGTTTCG
** * * * ** * * * **
16303 AGATAAAATAT-TCAATTTCAAGGGAAAGT-ATC----TC-AAGCGGTAAAAAATAT-TCTATTT
1 AGGGAAACTATCTCAA--GCGAGACAAAATCTTCTGTTTCGAAG-GG---AAACTATCTC-A-AG
* **** ** * **** * ****
16360 CGAG--AGAAACTATCTCAAGCGAGATAAAATAT-TC-AGTTTCATTGGAAAAT-ATCTCAAGCG
58 CGAGACAAAAACT-TCTGTTTCGAGGGAAACTATCTCAAGCGAGA-T--AAAATCTTCTGTTTCG
** *** ** * * *
16420 AGATAAA--ATCTTTTGTTTCGAG-GGAAA-CTATC----TCAAAGGAGATAA-AATCAT-ATGT
1 AGGGAAACTATCTCAAG---CGAGACAAAATCT-TCTGTTTCGAAGG-GA-AACTATC-TCAAG-
*** *** *** ** *** * ****
16475 TTTGAGGGAAACTATCTCAAGT-GAGACAAA--ATCTTCTATTTTGAGA-GAAA-CTATCTCAAG
58 CGAGACAAAAACT-TCT-GTTTCGAGGGAAACTATC-TC-A-AGCGAGATAAAATCT-TCTGTTT
16535 CG
117 CG
** **** * * ** * * ****
16537 AGACAAAATCT-TCTGTTTCGAG-TAAAA-CTATCT-TTAGCG-AGATAAAATATTTTGTTTC-A
1 AG-GGAAA-CTATCTCAAGCGAGACAAAATCT-TCTGTT-TCGAAGGGAAACTA-TCTCAAGCGA
** **** ** *** ** * ****
16596 -AGGAAAACTATCTCAAGCGAGATAAA--ATCTTTTGTTTCGAGGGAAAAT-ATCTCAAGCG
61 GACAAAAACT-TCTGTTTCGAGGGAAACTATCTCAAG---CGAGATAAAATCTTCTGTTTCG
** * * * * * **
16654 AGAAAAAATCTTTTGTTTCATG-G-GA-AACTATC-TCAAG---CG-AGATAAA--ATCTTCTAT
1 AG-GGAAA-C---TATCTCAAGCGAGACAA-AATCTTC-TGTTTCGAAGGGAAACTATC-TC-A-
** ** **** ** **** * ****
16709 TTCGAG--GGAAACTATCTCAAGCGAGACAAAATCT-TCTGTTTC-AGA-GAAA-CTATCTCAAG
56 AGCGAGACAAAAACT-TCTGTTTCGAG-GGAAA-CTATCTCAAGCGAGATAAAATCT-TCTGTTT
16768 CG
117 CG
** * * * ** * *
16770 AGAAAAATCT-TCTGTTTCGAGGGAAACTATCTCAAGCGAGAAAAATCTTTATTTCG-A-GGAAA
1 AGGGAAA-CTATC----TC-----AAGCGA----GA-C-A-AAATCT-TCTGTTTCGAAGGGAAA
* *
16832 CTATCTCAAGC-AGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-T
48 CTATCTCAAGCGAGACAAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCT
16895 GTTTCG
113 GTTTCG
* * *
16901 ATGGGAAACTATCTCAAGCGAGATAAAATCTTATGTTTCG-AGGGAAACTATCTCAAGCGAGA-T
1 A-GGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * * *
16964 AAATCTTCTATATTCGAGGGAAACTATCTCAAGCGATA-AAAATCTTCTATTTCG
65 AAAACTTCTGT-TTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
17018 A-GGAAACTATCTCAAGCGAGATAAAATCTTATGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
17081 AAATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTC-
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
17134 AAGGAAAC-ATCTCAAGAGAGA-AAAATCTTCTGTTTCG-A-GGAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
17195 AATCTTC--TTTCGAGGGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
17245 AAGGGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCG-AGGGAAACTATCTGAAGCGAGA-A
1 -AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
** * * **
17307 AAATTTTATGTTTCGAGGAAAACTATCTCAAGCGTCATAAAATCTTCTGTTTCG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
17361 A-GGAAACTATCTCAA-CGAGATAAAATATTTTGTTTC-AAGGGAAACTATCTCAAGCGAG--AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
17421 AATCTTCTGTTTC-AGGGAAAATATCTCAAGCGAG--AAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
17471 AGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTT---A-GGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * *
17532 AATCTTCTGTTTCGAGGGAAACTATCTCAAGC--GAT-AGATCTT-TATTTTG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
17581 AGGGAAACTATCTCAAGCGAGAAAAAATATTCTATTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
17645 AATCTT-AGTTTTGAGGG-AACTATCTCAAGCGAGATAAAATCTTC--TTTC-
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
17693 A-GGAAACTATCTCAAGCGAGATAAAATC-TCTGTTTCG-AGGGAAACTATCTCAAGCGAGA-TA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
17754 AAA--TCTATTTTGAGGGAAACTATCTCAAGCGAGA-AAAATCTTCTATTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** ** *
17804 AGAGGAAACTATCTCAAGCGAGACAAAATCTTATGTTTCG-ATTGAAACT-TCTTTAGCGAGATA
1 AG-GGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
* * *
17867 AAATA-TTTTATTTCAAGGGAAA-TATCTCAAGCGAGATAAAATCTTCTGTTTCG
65 AAA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
17920 AGGGAAATTATCTCAAGCGAGAAAAAATCTT-TGTTTC-AAGAGGAAACTATCTCAAGCGAGA-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAG-GGAAACTATCTCAAGCGAGACA
* * *
17982 AAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAAT-TTCTGTTTC-
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
18034 AAGGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
18097 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
18150 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
18214 AATCTT-T-TTTC-A-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
18263 AGGGAAACTATCTCAAGCGATATAAGATCTTCTATTTTG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
18326 AAATCTTCTATTTCGA-GGAAACTATCTCAAGCGAGATAAAATCTTATGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
18379 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG-AGTGAAACAATCTCAAGAGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
18442 AAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG
66 AAA-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
18496 AGGGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
18559 AATCTTCTGTTTCGAGGGAAACTATCTTAA--GAGA-AAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
18609 AGGGAAACTATCTCAAGTGACATAAAATCTTCTGTTTCG-AGGAAAACTATCTCAACCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
18673 AATA-TTTTGTTTCAAGGGAAACTATCTCAAGCGAGGTAAAATCTTTTGTTTCT
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
18726 AGGGTAAA-TATCTCAAGCGAGATAAAATCTTCTATTTCG-AGGGAAACTATCTCAAGCGAGATA
1 AGGG-AAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
**** *
18789 AAAA--AAAATTTCGTA-GGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG
65 AAAACTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * * *
18841 ATAGAAACTATCTCAA--TATA-TAAATCTT-TGTTT-G-AGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
18900 AATCTTCTATTTCGAGTGAAATTATCTCAAGCGAGATAAAATCTTATG-TTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
18952 AAGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAA-AGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
19014 AATCTTCTGTTTCGAGGGAAA-TATCTCAAGCGAGA-AAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
19065 A-GGAAAATATCTCAA-CG-GATAAAATCTTCTATTTTG-AGGGAAACTATCTCAAGCGATA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
19125 AATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
19177 AGGGAAACTATCTCATGTGAGATAAAATCTTCTG-TTCG-A-GGAAACTATCTCAAGCAATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* *
19239 AATCTTAT-TTT-GA-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
19289 AGGGAAACTATCTTAAGCGATA-TAAATCTTC--TTT-G-AGGGAAAACTATCTCAA--GAGA-A
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGG-AAACTATCTCAAGCGAGACA
* *
19346 AAATCTTC--TTTCGAAAGGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTTCG
65 AAAACTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
19398 AGGGAAA-TATCTCAACCTAGATAAAAAATCTTCTG-TTC-AA-GGAAACTATCTCAAGCGAGAT
1 AGGGAAACTATCTCAAGC--GAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGAC
* * * *
19459 AAAATCTTAT-TTT---GGGAATCTATCTCAAGCGAGATAAAATCTT-TGTTTCA
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
19509 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAAGTATCTCAAGCAAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
*
19573 AATA-TTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
19626 A-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC--A-GGAAACTATCTCAAGCGAG--AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
19685 AAA--TC---TTCAAGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
19733 A-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTTG-AGGGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * *
19795 ATA-TTCTATTTC-A-AGAAACTATCTCATGCGAGAAAAAATCTTCTGTTT--
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
19843 AGGGAAACTATCT-TAGCGAGATAAAATATT-TGTTTC-AAGGGAAACTATCTCAAACAAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* ** *
19905 AATCTTCTGTTTCGAAAGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
19958 AGGGAAAATATCTCAAGCGAGAAAAAATCTTCTGTTTC-AAGGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * * * * * *
20022 AATCTTTTATTTCGAGGAAAACTATCTCAAGCGAGATAAAATATTTTGTTTCA
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
20075 AGGGAAACTATCTCAAGCGAGATAAAATGTCCTGTTTCGAA-GGAAACTATCTCAAGCGAGA-AT
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA-
* * * * * *
20138 AAATCTTCTGTTTCGAAGGAAACTATCTAAAGCGAGAAAAAACCTTCTGTTTTG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
20192 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTCG-AGGGAAACTATCTCATGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * *
20256 AATGTTCTATTTAGAGGGAAACTATCTCAAGCGATGA-AAAATCTTATGTTTCG
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * * * *
20309 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-TGAGAAACTATCTCACGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
* * *
20373 AATA-TTCTGTTTCAAGGGAAACCATCTCAAGCGAGATAAAATCTTTTGTTTC-
66 AA-ACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
20425 ATGGGAAACTATTTCAAGCAAGATAAAATAC-TGTGTTTC-AAGGGAAACTATCTCAAGCGAGAT
1 A-GGGAAACTATCTCAAGCGAGACAAAAT-CTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGAC
* * * * *
20488 AAAATCTTCTGTTTCGAGGGATACTATCTCAAGAGAGATAAAATCTTCTATTTTG
64 AAAAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
20543 AGGGAAACTATCTCAAGCGAGA-TAAATCTT-TGTTTCG-AGTGAAACTATTTCAAGCGATATAA
1 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
** * * * ** *
20605 AATTTTCTATTTAGAGGGAAACTATCTCAAGTGAGATAAAAAATTCTATTT-G
66 AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
20657 AATGGAAACTATCTCAAGCGAGATAAAATCTTCCGTTTCG-AGGGAATCTATCTGAAGCGAGATA
1 -AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACA
** * *
20721 AAATTTTCTGTTTTGAGGAAAACTATCTCAAG
65 AAAACTTCTGTTTCGAGGGAAACTATCTCAAG
20753 ATGTTAAATC
Statistics
Matches: 16672, Mismatches: 2981, Indels: 1735
0.78 0.14 0.08
Matches are distributed among these distances:
98 6 0.00
100 1 0.00
101 19 0.00
102 4 0.00
103 6 0.00
104 3 0.00
106 45 0.00
107 123 0.01
108 36 0.00
109 160 0.01
110 268 0.02
111 298 0.02
112 335 0.02
113 464 0.03
114 506 0.03
115 751 0.05
116 2541 0.15
117 9402 0.56
118 733 0.04
119 406 0.02
120 78 0.00
121 37 0.00
122 7 0.00
123 10 0.00
124 2 0.00
125 4 0.00
126 3 0.00
127 2 0.00
128 8 0.00
129 7 0.00
130 28 0.00
131 33 0.00
132 33 0.00
133 24 0.00
134 93 0.01
135 116 0.01
136 35 0.00
137 30 0.00
138 8 0.00
139 7 0.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (118 bp):
AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGACAA
AAACTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
Found at i:2430 original size:19 final size:19
Alignment explanation
Indices: 2408--2455 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
2398 ACTTATGTTT
2408 CAAGTAAAACTATATCAAC
1 CAAGTAAAACTATATCAAC
** *
2427 CAAGGGAAACTATCTCAAC
1 CAAGTAAAACTATATCAAC
*
2446 TAAGATAAAA
1 CAAG-TAAAA
2456 TATTTTGTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (19 bp):
CAAGTAAAACTATATCAAC
Found at i:2470 original size:39 final size:39
Alignment explanation
Indices: 2429--5672 Score: 3517
Period size: 39 Copynumber: 83.4 Consensus size: 39
2419 ATATCAACCA
* * * *
2429 AGGGAAACTATCTCAA-CTAAGATAAAATATTTTGTTTCA
1 AGGGAAACTATCTCAAGC-GAGATAAAATCTTCTGTTTCG
* * *
2468 AGGGAAA-TATCTCAAGGGAGGTAAAATCTTCT-TTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
2505 AGGGAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2544 AGAGAAAATATCTCAAGCGAGATAAAATATTCTGTTTC-
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
2582 ATGCGACACTATCTCAAGCGAGATAAAAACTTCTGTTTCG
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * *
2622 ATTGAAACTATCTCAAGGGAGATAAAATCTTCTGTTACG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
2661 AGGGAAACTATCT-ATAGCAAAAACAAAATCTTCTGTTTTG
1 AGGGAAACTATCTCA-AGC-GAGATAAAATCTTCTGTTTCG
* *
2701 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
2740 AGAGAAACTATCTCAAACGCGATAAAATTTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2779 AGGGAAACTATGTCAAGCGAGATAAAAT-TTTTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2817 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
2856 AGGTAAAATATTTTAAGTGAGATAAATTCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
2895 AGGGAAACTATCCCAAGCTAGACAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
2934 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
2973 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3012 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3051 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3090 AGGGAAACTATCTCAAGCGAGATAAAATGTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3129 AGGGAAACTATCTCAAGCGATATAAAATCTTCAGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3168 AGGGAAACTATCTCAAGCGAGATAAAATCTTCGGTTCCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
3207 AGGAAAATTATCTCAAGTAATATAAAATCTTAAT-TTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* *
3246 AGGGAAACGATCTCAAGCGAGATAAAATCATCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
3285 AGAGAAACTATCTCAAGCTATATAAGATCTTCAAT-TTTGG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTC--TGTTTCG
* * * * ** *
3325 TGGAAAAC-ATCTCAAGCAAGAAAAAATCTTCAATTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3363 AGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3402 GGGGAAACTATCTCAAACGAGAAAAAATCTTCTTTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * **
3441 AGGGAAACTATCTCAAGCAAGATAAAATATTTTGTTTAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3480 AGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3519 TGGGAATCTATCTCTAGCGAGATAAAATCTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
3558 ATGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
3597 AGGGAAAGTATCTCAAGCGATATAAAATCTTCTGATTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3636 AGGGAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3675 AGGTAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
3714 AGCGAAACTATCTCAAGCGATATAAAATCTTCT-ATTCTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-G
* * * * *
3753 AGAGAAACTATATCAAGCGAAATAAAATCTTCTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3792 AGGTAAACTATCTTAAGCAAGATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
3831 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * * *
3870 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3909 AGGGAAATTATCTCAAGCGAGACAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3948 AGGGAAACTATCTCAAGCGAAATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
3987 AGGGAAACTATTTCAAGCGAGATAAAATCTTTTTTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATC--TTCTGTTTCG
4028 TA-GGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 -AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
4067 AGGGAAAATATCTCAAGCGATATAAGATCTTTTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
4106 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
4145 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4184 AAGGAAACTATCTGAAGCGAGATAAAATCCTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* ** ** *
4223 AGGGAAACTATCTCAAGCGATATAGGATCTTCAATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** *
4262 CTGGAAAAC-ATCTCAAGCAAGAAAAAATATTCAATTT-A
1 -AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4300 AGGGAAAATTATCTCAAGCGAGACAAAATCATCTGTTTCG
1 AGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4340 AAGGAAACTATCTCAAACGAGAAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAG-ATAAAATCTTCTGTTTCG
* * * *
4380 AGGGAAACTATCTCAAGCGATATAAAATATTTTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
4419 AGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
4458 TGGGAATCTATCTCAAATGACATAAAATCTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
4497 ACGGAAACTATCTCAAGCGAGATAAACTCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
4536 AAGGAAAGTATCTCAAGCGATATAAAATCCTCTGATTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4575 AGGGAAACTATCCCAAGCGA-ATCAAAATCTTTTGTTTCA
1 AGGGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCG
4614 AGGGAAACTATCTCAAGCGAGATAAAA---TCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4650 AGGGAAACTATCTCAAGCGATATAAAATCTTCTATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
4689 AGAGAAACTATATCAAGCGAAATAAAATCTTCTGTTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
4728 AGGTAAACTATCTTAAGCGAGAAAAAATCTTCTTTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
4767 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** *
4806 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * ** *
4845 AAGGAAACAATCTCAAGCGAAATAATATCATCAATTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** *
4884 AGGGAAAAC-ATCTCAAGCAAGAAAAAATCTTCAATTTCA
1 AGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
4923 AGCGAAACTATCTCAAGCGAGA-CAAATTTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
4961 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
5000 AGGGAAACAATCTCAAGCGAGATAAAATATTTTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** *
5039 ATTGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
5078 TGGGTATCTATCTCAAGCGAGATAAAATCTTCTGTTTCT
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
5117 AGGGAAACTATCACAAGCTAGATAAAATCTTCTGTTTTGG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
* * * ** *
5157 AGGGAAAGTATCTCAGGCAAGATAAAAAAATTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCG
* * *
5197 AGGGAAACTATCTCAAGCCATATAAAATCTTCTATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
5236 AAGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** *
5274 ATAAGAAACTATCTCAAGCGAGA-AAAATCTTCTGTTCCG
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
5313 -TGGAAACTATCTCAAGCGAGAAAAAATCTTATATTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
5351 AGGG--A--AT-T-AAGCGAGATAAAATCTTCTGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
5384 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
5423 AGGGAAA-TAATCTCAAGCGTGACAAAATCTTCTGTTTCG
1 AGGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
5462 AGGGTAACTATCTCAAGCGAGATAAAATCTTCTGTTTTG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * ** * * *
5501 AGAAAAACTATCTCAAACGAGACCAAATCATATGTTTCA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
5540 AGGGAAACTATATTAAACAAGAAAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * **
5579 AGGGAAGCTATCTGAAGCGAGAAAAAAAATTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
5618 ATGAAAACTATCTCGAGCGAAATAAAATCTTCTGTTTCG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
5657 AGAGAAACTATCTCAA
1 AGGGAAACTATCTCAA
5673 CCAAGAGAAA
Statistics
Matches: 2672, Mismatches: 481, Indels: 104
0.82 0.15 0.03
Matches are distributed among these distances:
33 24 0.01
34 1 0.00
35 3 0.00
36 33 0.01
37 36 0.01
38 164 0.06
39 2225 0.83
40 140 0.05
41 45 0.02
42 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (39 bp):
AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
Found at i:2531 original size:19 final size:19
Alignment explanation
Indices: 2509--2573 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
2499 TTTTCAAGGG
2509 AAAATATCTCAAGCGAGAT
1 AAAATATCTCAAGCGAGAT
* **** *
2528 AAAATCTTCTGTTTCGAGAG
1 AAAAT-ATCTCAAGCGAGAT
2548 AAAATATCTCAAGCGAGAT
1 AAAATATCTCAAGCGAGAT
2567 AAAATAT
1 AAAATAT
2574 TCTGTTTCAT
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (19 bp):
AAAATATCTCAAGCGAGAT
Found at i:2582 original size:173 final size:173
Alignment explanation
Indices: 2256--2570 Score: 397
Period size: 173 Copynumber: 1.8 Consensus size: 173
2246 TTCTATATCG
* *
2256 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGAAACTATCTCAAGCGGGAAAAAA
1 AGGGAAACTATCTCAAGCAAGACAAAATATTCTGTTTCAAGGAAACTATCTCAAGCGGGAAAAAA
* ** * *
2321 TCTTCTGTTTCGACAGAATCTATATGAAGCGAGAAAAATTTTATGTTTCGAGAAAAACTATCTCA
66 TCTTCTGTTTCAACAGAAAATATATCAAGCGAGAAAAATCTTATGTTTCGAGAAAAACTATCTCA
*
2386 ATCGACATAAAAACTTATGTTTCAAGTAAAACTATATCAACCA
131 AGCGACATAAAAACTTATGTTTCAAGTAAAACTATATCAACCA
* * **
2429 AGGGAAACTATCTCAA-CTAAGATAAAATATTTTGTTTCAAGGGAAA-TATCTCAAG-GGAGGTA
1 AGGGAAACTATCTCAAGC-AAGACAAAATATTCTGTTTCAA-GGAAACTATCTCAAGCGG-GAAA
** * *
2491 AAATCTTCT-TTTCAAGGGAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCGAGAGAAAA-TA
63 AAATCTTCTGTTTCAACAGAAAATATATCAAGCGAGA-AAAATCTTATGTTTCGAGA-AAAACTA
*
2554 TCTCAAGCGAGATAAAA
126 TCTCAAGCGACATAAAA
2571 TATTCTGTTT
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
172 23 0.19
173 88 0.73
174 9 0.08
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (173 bp):
AGGGAAACTATCTCAAGCAAGACAAAATATTCTGTTTCAAGGAAACTATCTCAAGCGGGAAAAAA
TCTTCTGTTTCAACAGAAAATATATCAAGCGAGAAAAATCTTATGTTTCGAGAAAAACTATCTCA
AGCGACATAAAAACTTATGTTTCAAGTAAAACTATATCAACCA
Found at i:2603 original size:78 final size:78
Alignment explanation
Indices: 2429--11143 Score: 6937
Period size: 78 Copynumber: 111.8 Consensus size: 78
2419 ATATCAACCA
* * * * * *
2429 AGGGAAACTATCTCAA-CTAAGATAAAATATTTTGTTTCAAGGGAAA-TATCTCAAGGGAGGTAA
1 AGGGAAACTATCTCAAGC-GAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
2492 AATCTTCT-TTTCA
65 AATCTTCTGTTTCG
* * *
2505 AGGGAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCGAGAGAAAATATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
2570 ATATTCTGTTTC-
66 ATCTTCTGTTTCG
* * * ** *
2582 ATGCGACACTATCTCAAGCGAGATAAAAACTTCTGTTTCGATTGAAACTATCTCAAGGGAGATAA
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
2647 AATCTTCTGTTACG
65 AATCTTCTGTTTCG
* * * * *
2661 AGGGAAACTATCT-ATAGCAAAAACAAAATCTTCTGTTTTGAGGGAAACTATCTCAAGCGAGACA
1 AGGGAAACTATCTCA-AGC-GAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATA
*
2725 AAATCTTCTATTTCG
64 AAATCTTCTGTTTCG
* * * * * *
2740 AGAGAAACTATCTCAAACGCGATAAAATTTTCTGTTTCAAGGGAAACTATGTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
2805 AT-TTTTGTTTCG
66 ATCTTCTGTTTCG
* * * * * * *
2817 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGGTAAAATATTTTAAGTGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
2882 TTCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * *
2895 AGGGAAACTATCCCAAGCTAGACAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
2960 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * *
2973 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCCCAAGCGAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
3038 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* *
3051 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
3116 ATGTTCTATTTCG
66 ATCTTCTGTTTCG
* *
3129 AGGGAAACTATCTCAAGCGATATAAAATCTTCAGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
3194 ATCTTCGGTTCCG
66 ATCTTCTGTTTCG
* * ** * * *
3207 AGGAAAATTATCTCAAGTAATATAAAATCTTAAT-TTTCGAGGGAAACGATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
3271 AATCATCTGTTTCG
65 AATCTTCTGTTTCG
* * * * * * * * *
3285 AGAGAAACTATCTCAAGCTATATAAGATCTTCAAT-TTTGGTGGAAAAC-ATCTCAAGCAAGAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTC--TGTTTCGAGGGAAACTATCTCAAGCGAGATA
** *
3348 AAATCTTCAATTTCA
64 AAATCTTCTGTTTCG
* * * * *
3363 AGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCGGGGGAAACTATCTCAAACGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
3428 ATCTTCTTTTTCG
66 ATCTTCTGTTTCG
* * * ** * *
3441 AGGGAAACTATCTCAAGCAAGATAAAATATTTTGTTTAAAGTGAAACTATCTCAAGCAAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
3506 ATCTTATATTTCG
66 ATCTTCTGTTTCG
* * * * *
3519 TGGGAATCTATCTCTAGCGAGATAAAATCTTCTGTTTCAATGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
3584 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * *
3597 AGGGAAAGTATCTCAAGCGATATAAAATCTTCTGATTCGAGGGAAACTATCCCAAGCGAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
3662 ATCTTTTGTTTCA
66 ATCTTCTGTTTCG
* * * *
3675 AGGTAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAGCGAAACTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
3740 ATCTTCT-ATTCTG
66 ATCTTCTGTTTC-G
* * * * * * * *
3753 AGAGAAACTATATCAAGCGAAATAAAATCTTCTATTTTGAGGTAAACTATCTTAAGCAAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
3818 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* * * * ** *
3831 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCGACAGAAACGATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
* *
3895 AATCTTCTATTTTG
65 AATCTTCTGTTTCG
* * *
3909 AGGGAAATTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAAATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
3974 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* *
3987 AGGGAAACTATTTCAAGCGAGATAAAATCTTTTTTGTTTCGTA-GGAAACTATCTCAAGCGAGAT
1 AGGGAAACTATCTCAAGCGAGATAAAATC--TTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
4051 AAAATCTTCTGTTTCG
63 AAAATCTTCTGTTTCG
* * * * * * *
4067 AGGGAAAATATCTCAAGCGATATAAGATCTTTTATTTTGAGGGAAACTATCTCAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
4132 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* * *
4145 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAAGGAAACTATCTGAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
4210 ATCCTCTGTTTCG
66 ATCTTCTGTTTCG
* ** ** * * * * *
4223 AGGGAAACTATCTCAAGCGATATAGGATCTTCAATTTTGCTGGAAAAC-ATCTCAAGCAAGAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAA
* ** *
4287 AATATTCAATTT-A
65 AATCTTCTGTTTCG
* * * * * *
4300 AGGGAAAATTATCTCAAGCGAGACAAAATCATCTGTTTCGAAGGAAACTATCTCAAACGAGAAAA
1 AGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-ATA
4365 AAATCTTCTGTTTCG
64 AAATCTTCTGTTTCG
* * * * * *
4380 AGGGAAACTATCTCAAGCGATATAAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
4445 ATCTTATATTTCG
66 ATCTTCTGTTTCG
* * ** * * *
4458 TGGGAATCTATCTCAAATGACATAAAATCTTCTGTTTCAACGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
4523 CTCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * * *
4536 AAGGAAAGTATCTCAAGCGATATAAAATCCTCTGATTCGAGGGAAACTATCCCAAGCGA-ATCAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT-AA
* *
4600 AATCTTTTGTTTCA
65 AATCTTCTGTTTCG
*
4614 AGGGAAACTATCTCAAGCGAGATAAAA---TCTGTTTCGAGGGAAACTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
4676 ATCTTCTATTTTG
66 ATCTTCTGTTTCG
* * * * * * *
4689 AGAGAAACTATATCAAGCGAAATAAAATCTTCTGTTTTGAGGTAAACTATCTTAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
4754 ATCTTCTTTTTCG
66 ATCTTCTGTTTCG
* * * * ** *
4767 AGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCGACAGAAACGATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
4831 AATCTTCTGTTTCG
65 AATCTTCTGTTTCG
* * * * * ** * * *
4845 AAGGAAACAATCTCAAGCGAAATAATATCATCAATTTTGAGGGAAAAC-ATCTCAAGCAAGAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGATAA
** *
4909 AATCTTCAATTTCA
65 AATCTTCTGTTTCG
* * * *
4923 AGCGAAACTATCTCAAGCGAGA-CAAATTTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
4987 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * ** *
5000 AGGGAAACAATCTCAAGCGAGATAAAATATTTTGTTTCAATTGAAACTATCTCAAGCAAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
5065 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * * *
5078 TGGGTATCTATCTCAAGCGAGATAAAATCTTCTGTTTCTAGGGAAACTATCACAAGCTAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
5143 ATCTTCTGTTTTGG
66 ATCTTCTG-TTTCG
* * * ** * * *
5157 AGGGAAAGTATCTCAGGCAAGATAAAAAAATTCTGTTTCAAGGGAAACTATCTCAAGCCATATAA
1 AGGGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
5222 AATCTTCTATTTCG
65 AATCTTCTGTTTCG
* **
5236 AAGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-ATAAGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAA
*
5299 AATCTTCTGTTCCG
65 AATCTTCTGTTTCG
* * * *
5313 -TGGAAACTATCTCAAGCGAGAAAAAATCTTATATTTCGAGGG--A--AT-T-AAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
5371 ATCTTCTGTTTCA
66 ATCTTCTGTTTCG
* * * *
5384 AAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGGGAAA-TAATCTCAAGCGTGACAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGATAA
5448 AATCTTCTGTTTCG
65 AATCTTCTGTTTCG
* * ** * **
5462 AGGGTAACTATCTCAAGCGAGATAAAATCTTCTGTTTTGAGAAAAACTATCTCAAACGAGACCAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* * *
5527 ATCATATGTTTCA
66 ATCTTCTGTTTCG
* * * * * * * *
5540 AGGGAAACTATATTAAACAAGAAAAAATCTTCTGTTTCGAGGGAAGCTATCTGAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
**
5605 AAATTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * * * * *
5618 ATGAAAACTATCTCGAGCGAAATAAAATCTTCTGTTTCGAGAGAAACTATCTCAACCAAGA-GAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
****
5682 A-CTATCTCAACCG
66 ATCT-TCTGTTTCG
** * * **** * ** **** *
5695 AGATAAAATATTTTGTTTC-AAAGGAAA-CTATCTCAAGCGAGGTAAAATCT-TCTGTTTCAAG-
1 AGGGAAACTA-TCTCAAGCGAGATAAAATCT-TCTGTTTCGAGG-GAAA-CTATC----TCAAGC
*
5756 G-GA-AAATATC-TCAAG---CG
58 GAGATAAA-ATCTTC-TGTTTCG
** **** * **** * ** * ****
5773 AGATAAAATCT-TCTGTTTCGAGA-AAAAT-ATCTCAAGCAAGATAAAATATTCTGTTTC-ATG-
1 AG-GGAAA-CTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTA-TCTCAAGCGA-GA
** ****
5833 GGAAA-CTATCTCAAGCG
62 TAAAATCT-TCTGTTTCG
** * * * *** ** **
5850 AGATAAA--ATCTTC-TGTTCGA-TTGAAA-CTATC--TCAGGAGATAAATCT-TCTGTTA-CGA
1 AGGGAAACTATC-TCAAG--CGAGATAAAATCT-TCTGTTTCGAGGGAAA-CTATCT-CAAGCGA
* **** *
5906 G-TGAAA-CTATCTCAAGCA
60 GATAAAATCT-TCTGTTTCG
** * ** ** **** ** **
5924 AGACAAA--ATCTTATATTTTGAG-GGAAA-CTATCTCAAGCGAGACAAAAGCT-TCT-ATTTCG
1 AGGGAAACTATCTCA-A--GCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTCA-AGCG
* * ****
5983 AGA-GAAATTTTCTGAAGAG
59 AGATAAAATCTTCTGTTTCG
** * * * ** **** ** * * * *
6002 AGATAAAATAT-T-ATGTTTCAAG-GGAAA-CTATCTCAAGCGAGATAAA--ATGTTATGTTTTG
1 AGGGAAACTATCTCAAG---CGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTCAAG---CG
** *
6061 A-AGGAAA-CTATCAAG---CG
59 AGATAAAATCT-TC-TGTTTCG
** **** * * * ** ****
6078 AGAAAAAATCT-TCTGTTTCGAGGTAAAAT-ATCT-TAAGT-GAGATAAATTCT-TCTGTTTCGA
1 AG-GGAAA-CTATCTCAAGCGAGATAAAATCTTCTGT--TTCGAGGGAAA--CTATCTCAAGCGA
** * ****
6138 G--GGAACCTATCTCAAGCG
60 GATAAAATCT-TCTGTTTCG
** * ** ** **** * ** ****
6156 AGACAAAATAT-TCTATTTCGAG-GGAAA-CTATC-CAAGCAAGACAAAATCT-TCTGTTTCGAG
1 AGGGAAACTATCTC-A-AGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTCAAGCGAG
** *****
6216 -GGAAA-CTATCTCAAGAG
61 ATAAAATCT-TCTGTTTCG
** **** ** **** *** ****
6233 AGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTCAAGCGATATAAAATCT-TCTGTTTCGAG
1 AG-GGAAA-CTATCTCAAGCGAGATAAAATCT-TCTGTTTCGA-GGGAAA-CTATCTCAAGCGAG
* * * *
6294 AGAAACTATATCAAG---CG
61 ATAAAATCT-TC-TGTTTCG
** **** ** ** ** **
6311 AGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCT-TAAGCGAGATAAA--ATCTTCTATTCCG
1 AG-GGAAA-CTATCTCAAGCGAGATAAAATCT-TCTGT-TTCGAGGGAAACTATC-TC-A-AGCG
* **** *
6370 AG-GAAAAT-TATCTAAAGCA
59 AGATAAAATCT-TCTGTTTCG
*** * * *
6389 ATATAAAATCTTAATTTTAGAGGGAAACGATCTCAAGCGAGATAAAATCCTCTGTTTCGAGGGAA
1 A-GGGAAA-C-T-ATCTCA-A--G---C----------GAGATAAAATCTTCTGTTTCGAGGGAA
* * *
6454 ACTATCTCAAGCGATATAAGATCTTCAAT-TTTGG
46 ACTATCTCAAGCGAGATAAAATCTTC--TGTTTCG
* * * * ** * * *
6488 TGGAAAAC-ATCTCAAGCAAGAAAAAATCTTCAATTTCAAGGGAAACTATCTCAAGCGACACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
6552 ATCATCTGTTTCG
66 ATCTTCTGTTTCG
* * * *
6565 AGGGAAACTATCTCAAACGAGAAAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* * *
6630 ATATTTTGTTTCA
66 ATCTTCTGTTTCG
* * * * * **
6643 AGTGAAACTATCTCAAGCAAGATAAAATCTTATGTTTTGTGGGAATTTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
6708 ATCTTCTGTTTCA
66 ATCTTCTGTTTCG
* * *
6721 ACGGAAACTATCTCAAGCGAGATAATATCTTCTGTTTCGAGGGAAAGTATCTCAAGC-A-ATATA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATA-A
* *
6784 AATATTCAGTTTC-
65 AATCTTCTGTTTCG
* * *
6797 ATTGGAAAATATCTCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAAG-GAGATA
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATA
* * *
6861 AAATCATATGTTTTG
64 AAATCTTCTGTTTCG
* * * * * *
6876 AGGGAAACTATCTCAAGTGAGACAAAATCTTCTATTTTGAGAGAAA-TCATCTCAAGCGAGACAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGATAA
*
6940 AATATTCTGTTTCG
65 AATCTTCTGTTTCG
** ** * * * * *
6954 AGTAAAACTATCTTTAGCGAGATAAAATATTTTGTTTCAAGAGAAACTATCTCGAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
7019 ATCTTCTTTTTTG
66 ATCTTCTGTTTCG
* * * * * *
7032 AGGGAAAATATCTCGAGCGAGA-AAAAACATTTTGTTTCAAGGGAAACTATCTCAA-CAAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATC-TTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
7095 AATCTTCTATTTCG
65 AATCTTCTGTTTCG
* *
7109 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTTC-AGGGAAACTATCTCAAGCGACA-AA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAA
*
7172 ATCTCTTCTGTTTCG
65 A-ATCTTCTGTTTCG
* * * * * *
7187 AGGGAAACGATCTCAAGCGAGACAAACTCTTCAGATTCGAGAGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
7252 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* * * * *
7265 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTTGAGGGAAACTATCTTAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
7330 ATATTTTGTTTCG
66 ATCTTCTGTTTCG
* * * * * *
7343 TA-TGAAAATATCTCAAGCGAGATAAAATCTTCTGTCTCGATGGAAACAATCTCAAGCGATATAA
1 -AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
* *
7407 GATCTTCTATTTTC-
65 AATCTTCT-GTTTCG
* * * * *
7421 AGGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCGTGTGAAATTATCTCAAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATAA
* *
7486 AATCTTATGTTTCA
65 AATCTTCTGTTTCG
* * * * *
7500 AAGGAAACTATCTCAAGCGAGGA-AAAATCTTCTGTTTCGAGTGAAACAATCTCAAGAGAGAGAA
1 AGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
7564 AATCTTCTGTTTCG
65 AATCTTCTGTTTCG
* * * *
7578 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGTAATA-TATCTCAAGCAAGAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAA-ACTATCTCAAGCGAGATAA
*
7642 AATCTTCTGTTTTG
65 AATCTTCTGTTTCG
* * * * * * * *
7656 AGGTAAAATATCTTAAGTGAGATAAATTCTTCTATTTCGAGGGAAACTATCACAAGTGAGA-AAC
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA-
* *
7720 AATTTTCTGTTTTG
65 AATCTTCTGTTTCG
* * * *
7734 AGGAAAACTATCTCAAGCGACATAAAATCTTCTGTTTCGAGGGAAACTATCTTAACCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* * *
7799 ATATTTTGTTTCA
66 ATCTTCTGTTTCG
* * * *
7812 AGGGAAACTATCTCAAGCGATG-TAAAATCTTTTGTTTCTATGGTAAA-TATCTTAAGCGAGATA
1 AGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATA
7875 AAATCTTCTGTTTCG
64 AAATCTTCTGTTTCG
* * * * ** *
7890 AGGGAAACTAACTCAAGCGAGAAAAAATCTTCTGTTTCGAGTGAAACAATCTCAAAAGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
7955 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * *
7968 AGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGTAATCTATCTCAAGCAAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
8033 ATCTTCTATTTTG
66 ATCTTCTGTTTCG
* * * * * * * *
8046 AGGTAAAATATCTTAAGTGAGATAAATTCTTCTATTTCGAGGGAAACTATCACAAGTGAGA-AAC
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA-
* * *
8110 AATTTTATGTTTTG
65 AATCTTCTGTTTCG
* * * * *
8124 AGGAAAACTATCTCAAGCGACATAAAATCTACTATTTCGAGGGAAACTATCTCAACCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
8189 ATCATCTATTTCG
66 ATCTTCTGTTTCG
* *
8202 AGGGAAACTATCTCAAGCAATATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
8267 ATCTTCTGTTTTG
66 ATCTTCTGTTTCG
* * * ** *
8280 AGGGAAACTATCTCAAGCGAGATAAAATCTTCT-ATTCTGAGGAAAACTATCTTAAGTAATATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTCAAGCGAGATAA
**
8344 AATCTTAAGTTTCG
65 AATCTTCTGTTTCG
* * * * * * *
8358 AGGGAAACGATCTCTACCGAGATAAAATCCTCAGTTTCGAGGGAAACTATCTCAAGCGATATAAG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
** *
8423 ATCTTCAATTTTG
66 ATCTTCTGTTTCG
* * ** * * * *
8436 AGGGAAAC-ATCTTAAGCGAGAAAAAATCTTCAATTTCAAGAGAAACTTTCTCAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
8500 ATCTTCTGTTTTG
66 ATCTTCTGTTTCG
* * * * * * * *
8513 AGGGAAACTATCTAAAGCTATATAAAATAATTC-ATTTCAAGTGAAACTATCTCAAGCAAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAAT-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
* *
8577 ATTCTTATGTTTCG
65 AATCTTCTGTTTCG
* * *
8591 TGGGAATCTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
8656 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* ** * * * * *
8669 AGGGAAAGTATCTCAAGTAAGATAAAATATTCTATTTCAAGGCAAACTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
8734 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* * * *
8747 AGAGAAACTATCTCAAGCGAGATAAAATATTTTGTTTC-ATTGGAAACTATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAA
*
8811 AATCTTCAGTTTC-
65 AATCTTCTGTTTCG
* * *
8824 ATGGGAAATTATCTCAAGCGAGATAAAATATTTTGTTTCGAGGGAAACTATCTCAAAG-GAGATA
1 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGATA
*
8888 AAATCTTCTGTTTTG
64 AAATCTTCTGTTTCG
* * * * * * * * * *
8903 TGGGAAACTATCTCAAGCAAGACAAAATATTCTATTTTGAGAGAAACTATCTCATGCCAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
8968 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
** * * * * *
8981 AGGGAAACTATCTTTAGCGAGATAAAATATTTTGTTTC-AAGGAAAATATCTCAAACGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
9045 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * * *
9058 AAGGAAACTATCTCAAGCAAGAAAAAATCTTCTGTTTCGAGGGAAAATATCTCAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9123 ATCTTCTGTTTCA
66 ATCTTCTGTTTCG
* *
9136 AGGAAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* * *
9201 ATATTTTATTTCG
66 ATCTTCTGTTTCG
* * * *
9214 AGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
9279 ATC-TCTGTTTCG
66 ATCTTCTGTTTCG
* * * * * * *
9291 AAGGAAACTATCTGAAGCGAGAAAAAATCTTCTGTTTTGAAGGAAACTATCTGAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
9356 ACCTTCTGTTTTG
66 ATCTTCTGTTTCG
* * *
9369 AGGGAAACTATCTCATGCGAGACAAAATCTTCTGTTTAGAGGGAAACTATCTCAAGCGAGA-AAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9433 TATCTTCTTTTTCG
66 -ATCTTCTGTTTCG
* ** * * *
9447 AGGGAAAATATCTCAAATGAGATAAAATCTTCTGTTTCGTGAGAAACTATCTCAAGCGAAATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9512 ATCTTCTATTTCG
66 ATCTTCTGTTTCG
* *
9525 AGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9590 ATCTTCTGTTTCA
66 ATCTTCTGTTTCG
* * * *
9603 AGGGAAACTATCTCAAGCGATATAAAATCATCTATTTAGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
9668 ATCTTTTGTTTCA
66 ATCTTCTGTTTCG
* ** * * * *
9681 ATGGAAACTATCTTTAGTGAGATAAAATCATCTGTTTCGAGGGAAATTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9746 ATCTTCTGATTCG
66 ATCTTCTGTTTCG
* * * * *
9759 AGGGAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCAAGGGAAACTATCCCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9824 ATCTCCTGTTTCG
66 ATCTTCTGTTTCG
* * *
9837 AGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATATAAG
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
9902 ATCTTCTATTTTG
66 ATCTTCTGTTTCG
* * * ** *
9915 AGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCAATGGAAACTATCTTTAGTGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
9980 ATCATCTGTTTCG
66 ATCTTCTGTTTCG
* * * * * *
9993 AGGGAAATTATCTCAAGCGATATAAAATCTTTTGATTCGAGGGAAACTATCCCAAGCGAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
10058 ATCTTTTGTTTCA
66 ATCTTCTGTTTCG
* *
10071 AGGGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAGGGAAACTATCTCAAGCGATATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* *
10136 ATCTTCTATTTTG
66 ATCTTCTGTTTCG
** * * * * *
10149 AGACAAACTATATCAAGCGAAATAAAATCTTCTGTTTTGAGGTAAACTAT-TGTAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCT-CAAGCGAGATAA
* *
10213 AATCTTCTATTCCG
65 AATCTTCTGTTTCG
* * * * * * *
10227 A-GAAAACTATCTCAATCAATATAAAATCTTAAT-TTTCGAGAGAAACGATCTCAAGCGAGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
*
10290 AATCTTATGTTTCG
65 AATCTTCTGTTTCG
* * * * ** * * *
10304 AAGGAAA-TAATCTC-AGACGATATAATACCTTCAATTTTGACGGAAAAC-ATCTCAAGCGAGAA
1 AGGGAAACT-ATCTCAAG-CGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
** *
10366 AAAATCTTCAATTTCA
63 AAAATCTTCTGTTTCG
* * * * * *
10382 AGCGAAACTATCTCAGGCGAGACAAAATTTTCTGTTT-GAGGGAAACTATCTCAAGCGATAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
10446 ATCTTCAGTTTCG
66 ATCTTCTGTTTCG
* * * * * **
10459 AGGGAAACAATCTCAAACGAGATAAAATATTTTGTTTCAATTGAAACTATCTCAAGAC-AGATAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAG-CGAGATAA
*
10523 AATCTTCTGATTCG
65 AATCTTCTGTTTCG
* * * * * ** * *
10537 TGGGTATCTATCTCAAGCGAGATAAAATCATATGTTTATAGGGAAACTATCACAAGCTAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
*
10602 ATCTTCTGTTTTGG
66 ATCTTCTG-TTTCG
* * * * * *
10616 AGGGAAAGTATCTCAAGCAAGATAAAGCA-ATTCTGTTTCAAGGGAAACTATCTCCAA-CCATAT
1 AGGGAAACTATCTCAAGCGAGATAAA--ATCTTCTGTTTCGAGGGAAACTATCT-CAAGCGAGAT
*
10679 AAAATCTTCTATTTCG
63 AAAATCTTCTGTTTCG
* ** * * *
10695 ATGGAAACTATCAGAAGAGAGATAAAGTCTTCTGTTTC-ATGTGAAACTATCTCAAGCGAGA-AA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAA
*
10758 AATCTTTTGTTTCG
65 AATCTTCTGTTTCG
* * * *
10772 ATGGAAACTATCTCAAGCGAGAAAAAATCTTATATTTCGAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
10837 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * *
10850 AAGGAAACTATCTCAAGCGA-AAAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCAAGATAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
10914 ATCTTCTGTTTCG
66 ATCTTCTGTTTCG
* * * ** * *
10927 AGGGAAACTATCACAAGCAAGATAAAATCTTCTGTTTCAAGAAAAACTATCTCAAACGAGACAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
* * *
10992 ATATTCTATTTCA
66 ATCTTCTGTTTCG
* * * * * * * *
11005 AGGGAAACTATATCAAGCAAGAAAAAATATTCGGTTTCGAGGGAATCTATCTGAAGCGAGAAAAA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-ATAA
*
11070 AAT-TTCCGTTTCG
65 AATCTTCTGTTTCG
* * * *
11083 ATGGAAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGGGAAACTATCTCAACCGAGA
1 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA
11144 GAAACTATCT
Statistics
Matches: 7007, Mismatches: 1374, Indels: 515
0.79 0.15 0.06
Matches are distributed among these distances:
70 8 0.00
71 15 0.00
72 41 0.01
73 3 0.00
74 35 0.00
75 98 0.01
76 140 0.02
77 933 0.13
78 5138 0.73
79 371 0.05
80 164 0.02
81 8 0.00
82 5 0.00
87 1 0.00
88 1 0.00
91 1 0.00
93 1 0.00
94 4 0.00
97 7 0.00
98 24 0.00
99 5 0.00
100 4 0.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (78 bp):
AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAA
ATCTTCTGTTTCG
Found at i:5681 original size:19 final size:19
Alignment explanation
Indices: 5657--5693 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
5647 TTCTGTTTCG
5657 AGAGAAACTATCTCAACCA
1 AGAGAAACTATCTCAACCA
5676 AGAGAAACTATCTCAACC
1 AGAGAAACTATCTCAACC
5694 GAGATAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.27, G:0.11, T:0.16
Consensus pattern (19 bp):
AGAGAAACTATCTCAACCA
Found at i:5697 original size:97 final size:97
Alignment explanation
Indices: 5586--5769 Score: 242
Period size: 97 Copynumber: 1.9 Consensus size: 97
5576 TCGAGGGAAG
* * * * *
5586 CTATCTGAAGCGAGAAAAAAAATTCTGTTTCGATGAAAACTATCTCGAGCGAAATAAAATCTTCT
1 CTATCTCAACCGAGAAAAAAAATTCTGTTTCAAAGAAAACTATCTCAAGCGAAATAAAATCTTCT
* *
5651 GTTTCGAGAGAAACTATCTCAACCAAGAGAAA
66 GTTTCAAGAGAAAATATCTCAACCAAGAGAAA
* * * * **
5683 CTATCTCAACCGAGATAAAATATTTTGTTTCAAAGGAAACTATCTCAAGCGAGGTAAAATCTTCT
1 CTATCTCAACCGAGAAAAAAAATTCTGTTTCAAAGAAAACTATCTCAAGCGAAATAAAATCTTCT
*
5748 GTTTCAAGGGAAAATATCTCAA
66 GTTTCAAGAGAAAATATCTCAA
5770 GCGAGATAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
97 73 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (97 bp):
CTATCTCAACCGAGAAAAAAAATTCTGTTTCAAAGAAAACTATCTCAAGCGAAATAAAATCTTCT
GTTTCAAGAGAAAATATCTCAACCAAGAGAAA
Found at i:5722 original size:39 final size:39
Alignment explanation
Indices: 5679--11143 Score: 5895
Period size: 39 Copynumber: 140.5 Consensus size: 39
5669 TCAACCAAGA
* * * * *
5679 GAAACTATCTCAACCGAGATAAAATATTTTGTTTCAAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
5718 GAAACTATCTCAAGCGAGGTAAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
5757 GAAAATATCTCAAGCGAGATAAAATCTTCTGTTTCGA-G
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
5795 AAAAATATCTCAAGCAAGATAAAATATTCTGTTTC-ATGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GG
**
5834 GAAACTATCTCAAGCGAGATAAAATCTTCTG-TTCGATT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
5872 GAAACTATCTC-AG-GAGAT-AAATCTTCTGTTACGAGT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
5908 GAAACTATCTCAAGCAAGACAAAATCTTATATTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
5947 GAAACTATCTCAAGCGAGACAAAAGCTTCTATTTCGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * * *
5986 GAAATTTTCTGAAGAGAGATAAAATATTATGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
6025 GAAACTATCTCAAGCGAGATAAAATGTTATGTTTTGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
6064 GAAACTA--TCAAGCGAGAAAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
6101 TAAAATATCTTAAGTGAGATAAATTCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
6140 GAACCTATCTCAAGCGAGACAAAATATTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
6179 GAAACTATC-CAAGCAAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
6217 GAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
6256 GAAACTATCTCAAGCGATATAAAATCTTCTGTTTCGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
6295 GAAACTATATCAAGCGAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6334 GAAACTATCTTAAGCGAGATAAAATCTTCTATTCCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * * *
6373 AAAATTATCTAAAGCAATATAAAATCTTAAT-TTTAGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGG
* *
6412 GAAACGATCTCAAGCGAGATAAAATCCTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
6451 GAAACTATCTCAAGCGATATAAGATCTTCAAT-TTTGGTGG
1 GAAACTATCTCAAGCGAGATAAAATCTTC--TGTTTCGAGG
* * * ** *
6491 AAAAC-ATCTCAAGCAAGAAAAAATCTTCAATTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6529 GAAACTATCTCAAGCGACACAAAATCATCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6568 GAAACTATCTCAAACGAGAAAAAATCTTTTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
6607 GAAACTATCTCAAGCGATATAAAATATTTTGTTTCAAGT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
6646 GAAACTATCTCAAGCAAGATAAAATCTTATGTTTTGTGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
** * *
6685 GAATTTATCTCAAGCGAGATAAAATCTTCTGTTTCAACG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
6724 GAAACTATCTCAAGCGAGATAATATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
6763 GAAAGTATCTCAAGC-A-ATATAAATATTCAGTTTC-ATTG
1 GAAACTATCTCAAGCGAGATA-AAATCTTCTGTTTCGA-GG
* *
6801 GAAAATATCTCAAGCGAGATAAAATCTTTTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6840 GAAACTATCTCAAAG-GAGATAAAATCATATGTTTTGAGG
1 GAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
6879 GAAACTATCTCAAGTGAGACAAAATCTTCTATTTTGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6918 GAAA-TCATCTCAAGCGAGACAAAATATTCTGTTTCGAGT
1 GAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* ** * * * *
6957 AAAACTATCTTTAGCGAGATAAAATATTTTGTTTCAAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
6996 GAAACTATCTCGAGCGAGATAAAATCTTCTTTTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
7035 GAAAATATCTCGAGCGAGA-AAAAACATTTTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATC-TTCTGTTTCGAGG
* *
7074 GAAACTATCTCAA-CAAGATAAAATCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
7112 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTTC-AGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCGAGG
* *
7151 GAAACTATCTCAAGCGACA-AAATCTCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCGAGG
* * * * * *
7190 GAAACGATCTCAAGCGAGACAAACTCTTCAGATTCGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
7229 GAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7268 GAAACTATCACAAGCGAGACAAAATCTTCTATTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7307 GAAACTATCTTAAGCGAGATAAAATATTTTGTTTCGTA-T
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGG
* * *
7346 GAAAATATCTCAAGCGAGATAAAATCTTCTGTCTCGATG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7385 GAAACAATCTCAAGCGATATAAGATCTTCTATTTTC-AGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCT-GTTTCGAGG
* * * *
7424 GAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCGTGT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7463 GAAATTATCTCAAAGCGAGATAAAATCTTATGTTTCAAAG
1 GAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCGAGG
*
7503 GAAACTATCTCAAGCGAGGA-AAAATCTTCTGTTTCGAGT
1 GAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCGAGG
* * *
7542 GAAACAATCTCAAGAGAGAGAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
7581 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7620 TAATA-TATCTCAAGCAAGAAAAAATCTTCTGTTTTGAGG
1 GAA-ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
7659 TAAAATATCTTAAGTGAGATAAATTCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
7698 GAAACTATCACAAGTGAGA-AACAATTTTCTGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCGAGG
* *
7737 AAAACTATCTCAAGCGACATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
7776 GAAACTATCTTAACCGAGATAAAATATTTTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
7815 GAAACTATCTCAAGCGATG-TAAAATCTTTTGTTTCTATGG
1 GAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCGA-GG
* *
7855 TAAA-TATCTTAAGCGAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
7893 GAAACTAACTCAAGCGAGAAAAAATCTTCTGTTTCGAGT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* ** *
7932 GAAACAATCTCAAAAGAGAAAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
7971 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
8010 TAATCTATCTCAAGCAAGAAAAAATCTTCTATTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
8049 TAAAATATCTTAAGTGAGATAAATTCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
8088 GAAACTATCACAAGTGAGA-AACAATTTTATGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCGAGG
* * * *
8127 AAAACTATCTCAAGCGACATAAAATCTACTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
8166 GAAACTATCTCAACCGAGATAAAATCATCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
8205 GAAACTATCTCAAGCAATATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
8244 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
8283 GAAACTATCTCAAGCGAGATAAAATCTTCT-ATTCTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-GAGG
* * ** * **
8322 AAAACTATCTTAAGTAATATAAAATCTTAAGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
8361 GAAACGATCTCTACCGAGATAAAATCCTCAGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * ** *
8400 GAAACTATCTCAAGCGATATAAGATCTTCAATTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * ** * *
8439 GAAAC-ATCTTAAGCGAGAAAAAATCTTCAATTTCAAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
8477 GAAACTTTCTCAAGCGAGAAAAAATCTTCTGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * * *
8516 GAAACTATCTAAAGCTATATAAAATAATTC-ATTTCAAGT
1 GAAACTATCTCAAGCGAGATAAAAT-CTTCTGTTTCGAGG
* * * *
8555 GAAACTATCTCAAGCAAGATAAATTCTTATGTTTCGTGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
8594 GAATCTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
8633 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* ** * * *
8672 GAAAGTATCTCAAGTAAGATAAAATATTCTATTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
8711 CAAACTATCTCAAGCGATATAAAATCTTCTATTTCGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
8750 GAAACTATCTCAAGCGAGATAAAATATTTTGTTTC-ATTG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GG
*
8789 GAAACTATCTCAAGCGAGATAAAATCTTCAGTTTC-ATGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GG
* * *
8828 GAAATTATCTCAAGCGAGATAAAATATTTTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
8867 GAAACTATCTCAAAG-GAGATAAAATCTTCTGTTTTGTGG
1 GAAACTATCTC-AAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
8906 GAAACTATCTCAAGCAAGACAAAATATTCTATTTTGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
8945 GAAACTATCTCATGCCAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
** * * *
8984 GAAACTATCTTTAGCGAGATAAAATATTTTGTTTC-AAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9022 GAAAATATCTCAAACGAGATAAAATCTTCTGTTTCGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9061 GAAACTATCTCAAGCAAGAAAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9100 GAAAATATCTCAAGCGAGAAAAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9139 AAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9178 GAAACTATCTCAAGCGAGATAAAATATTTTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9217 GAAACTATCTCAAGCGAGATAAAATATTTTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9256 GAAACTATCTCAAGCGAGAAAAAATC-TCTGTTTCGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9294 GAAACTATCTGAAGCGAGAAAAAATCTTCTGTTTTGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9333 GAAACTATCTGAAGCGAGAAAAAACCTTCTGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9372 GAAACTATCTCATGCGAGACAAAATCTTCTGTTTAGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
9411 GAAACTATCTCAAGCGAGA-AAATATCTTCTTTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAA-ATCTTCTGTTTCGAGG
* ** * *
9450 GAAAATATCTCAAATGAGATAAAATCTTCTGTTTCGTGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9489 GAAACTATCTCAAGCGAAATAAAATCTTCTATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9528 GAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
9567 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9606 GAAACTATCTCAAGCGATATAAAATCATCTATTTAGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9645 GAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCAATG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
** * *
9684 GAAACTATCTTTAGTGAGATAAAATCATCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9723 GAAATTATCTCAAGCGATATAAAATCTTCTGATTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9762 GAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
9801 GAAACTATCCCAAGCGAGATAAAATCTCCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
9840 GAAACTATCTCAAGCGATATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9879 GAAACTATCTCAAGCGATATAAGATCTTCTATTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
9918 GAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCAATG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
** * *
9957 GAAACTATCTTTAGTGAGATAAAATCATCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
9996 GAAATTATCTCAAGCGATATAAAATCTTTTGATTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
10035 GAAACTATCCCAAGCGAGACAAAATCTTTTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
10074 GAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
10113 GAAACTATCTCAAGCGATATAAAATCTTCTATTTTGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
10152 CAAACTATATCAAGCGAAATAAAATCTTCTGTTTTGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
10191 TAAACTAT-TGTAAGCGAGATAAAATCTTCTATTCCGA-G
1 GAAACTATCT-CAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
10229 AAAACTATCTCAATCAATATAAAATCTTAAT-TTTCGAGA
1 GAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGG
* * *
10268 GAAACGATCTCAAGCGAGATAAAATCTTATGTTTCGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * ** *
10307 GAAA-TAATCTC-AGACGATATAATACCTTCAATTTTGACGG
1 GAAACT-ATCTCAAG-CGAGATAAAATCTTCTGTTTCGA-GG
* * ** * *
10347 AAAAC-ATCTCAAGCGAGAAAAAATCTTCAATTTCAAGC
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
10385 GAAACTATCTCAGGCGAGACAAAATTTTCTGTTT-GAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
10423 GAAACTATCTCAAGCGATAAAAAATCTTCAGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * **
10462 GAAACAATCTCAAACGAGATAAAATATTTTGTTTCAATT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* *
10501 GAAACTATCTCAAGAC-AGATAAAATCTTCTGATTCGTGG
1 GAAACTATCTCAAG-CGAGATAAAATCTTCTGTTTCGAGG
* * * * **
10540 GTATCTATCTCAAGCGAGATAAAATCATATGTTTATAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
10579 GAAACTATCACAAGCTAGATAAAATCTTCTGTTTTGGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCGAGG
* * * *
10619 GAAAGTATCTCAAGCAAGATAAAGCA-ATTCTGTTTCAAGG
1 GAAACTATCTCAAGCGAGATAAA--ATCTTCTGTTTCGAGG
* * * *
10659 GAAACTATCTCCAA-CCATATAAAATCTTCTATTTCGATG
1 GAAACTATCT-CAAGCGAGATAAAATCTTCTGTTTCGAGG
** * * *
10698 GAAACTATCAGAAGAGAGATAAAGTCTTCTGTTTC-ATGT
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GG
* *
10737 GAAACTATCTCAAGCGAGA-AAAATCTTTTGTTTCGATG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * *
10775 GAAACTATCTCAAGCGAGAAAAAATCTTATATTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
10814 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAAG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
10853 GAAACTATCTCAAGCGA-AAAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
10891 GAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * *
10930 GAAACTATCACAAGCAAGATAAAATCTTCTGTTTCAAGA
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * * *
10969 AAAACTATCTCAAACGAGACAAAATATTCTATTTCAAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
11008 GAAACTATATCAAGCAAGAAAAAATATTCGGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
* * * * *
11047 GAATCTATCTGAAGCGAGAAAAAAAT-TTCCGTTTCGATG
1 GAAACTATCTCAAGCGAG-ATAAAATCTTCTGTTTCGAGG
* *
11086 GAAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGG
1 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
*
11125 GAAACTATCTCAACCGAGA
1 GAAACTATCTCAAGCGAGA
11144 GAAACTATCT
Statistics
Matches: 4529, Mismatches: 809, Indels: 176
0.82 0.15 0.03
Matches are distributed among these distances:
35 10 0.00
36 21 0.00
37 39 0.01
38 436 0.10
39 3864 0.85
40 149 0.03
41 9 0.00
42 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (39 bp):
GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
Found at i:11147 original size:19 final size:19
Alignment explanation
Indices: 11120--11162 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
11110 TCTTATGTTT
*
11120 CGAGGGAAACTATCTCAAC
1 CGAGAGAAACTATCTCAAC
11139 CGAGAGAAACTATCTCAAC
1 CGAGAGAAACTATCTCAAC
11158 CGAGA
1 CGAGA
11163 TAAAATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (19 bp):
CGAGAGAAACTATCTCAAC
Found at i:11156 original size:58 final size:58
Alignment explanation
Indices: 11086--11200 Score: 176
Period size: 58 Copynumber: 2.0 Consensus size: 58
11076 CGTTTCGATG
* * *
11086 GAAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGGGAAACTATCTCAACCGAGA
1 GAAACTATCTCAACCGACATAAAATATTATGTTTCAAGGGAAACTATCTCAACCGAGA
* * *
11144 GAAACTATCTCAACCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAG
1 GAAACTATCTCAACCGACATAAAATATTATGTTTCAAGGGAAACTATCTCAACCGAG
11201 GTAAAATCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (58 bp):
GAAACTATCTCAACCGACATAAAATATTATGTTTCAAGGGAAACTATCTCAACCGAGA
Found at i:11206 original size:39 final size:39
Alignment explanation
Indices: 11139--11943 Score: 695
Period size: 39 Copynumber: 21.2 Consensus size: 39
11129 CTATCTCAAC
* * * *
11139 CGAGAGAAACTATCTCAACCGAGATAAAATATTTTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * *
11178 CAAGGGAAACTATCTCAAGCGAGGTAAAATCTTCTATTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * *
11217 C-AAGGAAAATATCTCAAGCGAGTTAAAATCTTCTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * * * *
11255 CGAGAGAAAATATCTCATGCGAGATAAAATATTTTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* *
11294 C-ATGGGAAACTATCTCAAGCAAAATAAAATCTTCTGTTT
1 CGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
** * * *
11333 CGATTGAAACTATCTCAAGCAAGACAAAATCTTCTATCTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGT-TT
* *
11373 -GAGGGAAACTATCTCAAGCGAGACAAAA-CTTCTATTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * *
11410 CGAGAGAAACTATCTCAAGCGAGATAAAATATTTTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* **
11449 CAAGTTAAACTATCTCAAGCGAGGA-AAAATCTTCTGTTT
1 CGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTT
** * * * *
11488 CGAGCTAAAATATCTTAAGTGAGATAAATTCTTCTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * * *
11527 CGAGGAAAACTATCTCAAGCGAGACAAAATATTCTATTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * * *
11566 CGAGGGAAACTATCCCAAGCAAGACAAAATCTTCTATTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* *
11605 CGAGGGAAACAATCTCAAGCGACATAAAATCTTCTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
11644 CGAGGGAAACTATCTCAA--GAGATATAAA---TC-G-TT
1 CGAGGGAAACTATCTCAAGCGAGATA-AAATCTTCTGTTT
11677 -G-GGAGAAA-TA--TCAAGCGAGATAAAATCTTCTGTTT
1 CGAGG-GAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
*
11712 CGAGGGAAACTATCTCAAGCGAGAT---A---TCTGTTC
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * * *
11745 CGAGGAAAATTATCT----C-ATATAAAATCTTAAT-TTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTT
* *
11779 TGAGGGAAA-TGATCTCAAGCGAGATAAAATCCTCTGTTT
1 CGAGGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTT
* * * **
11818 CGAGGGAAACTATCTAAAGCGATATAATATCTTCAATTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* **
11857 TG-GTGGAATAC-ATCTCAAGCGAGA-AAAACTCTTCAATTT
1 CGAG-GGAA-ACTATCTCAAGCGAGATAAAA-TCTTCTGTTT
* * * * *
11896 CAAGGGAAATTATCCCAAGCGAGACAAAATCATCTGTTT
1 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
11935 CGAGGGAAA
1 CGAGGGAAA
11944 AAATCTTCTG
Statistics
Matches: 624, Mismatches: 99, Indels: 86
0.77 0.12 0.11
Matches are distributed among these distances:
28 3 0.00
29 5 0.01
30 3 0.00
31 11 0.02
32 5 0.01
33 24 0.04
34 16 0.03
35 5 0.01
36 6 0.01
37 11 0.02
38 80 0.13
39 442 0.71
40 13 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (39 bp):
CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
Found at i:11283 original size:19 final size:19
Alignment explanation
Indices: 11222--11286 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
11212 TATTTCAAGG
* *
11222 AAAATATCTCAAGCGAGTT
1 AAAATATCTCATGCGAGAT
* ** * *
11241 AAAATCTTCTGTTTCGAGAG
1 AAAAT-ATCTCATGCGAGAT
11261 AAAATATCTCATGCGAGAT
1 AAAATATCTCATGCGAGAT
11280 AAAATAT
1 AAAATAT
11287 TTTGTTTCAT
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
19 21 0.64
20 12 0.36
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (19 bp):
AAAATATCTCATGCGAGAT
Found at i:11432 original size:19 final size:20
Alignment explanation
Indices: 11377--11433 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
11367 TATCTTGAGG
11377 GAAACTATCTCAAGCGAGAC
1 GAAACTATCTCAAGCGAGAC
* **
11397 AAAACT-TCT-ATTTCGAGA-
1 GAAACTATCTCA-AGCGAGAC
11415 GAAACTATCTCAAGCGAGA
1 GAAACTATCTCAAGCGAGA
11434 TAAAATATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 7
0.68 0.15 0.17
Matches are distributed among these distances:
18 6 0.21
19 16 0.57
20 6 0.21
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAACTATCTCAAGCGAGAC
Found at i:11938 original size:20 final size:20
Alignment explanation
Indices: 11915--11960 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
11905 TTATCCCAAG
*
11915 CGAGACAAAATCATCTGTTT
1 CGAGAAAAAATCATCTGTTT
*
11935 CGAGGGAAAAAATCTTCTGTTT
1 CGA--GAAAAAATCATCTGTTT
11957 CGAG
1 CGAG
11961 GGAAACTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.18
22 18 0.82
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (20 bp):
CGAGAAAAAATCATCTGTTT
Found at i:11971 original size:22 final size:22
Alignment explanation
Indices: 11921--11965 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11911 CAAGCGAGAC
*
11921 AAAATCATCTGTTTCGAGGGAA
1 AAAATCTTCTGTTTCGAGGGAA
11943 AAAATCTTCTGTTTCGAGGGAA
1 AAAATCTTCTGTTTCGAGGGAA
11965 A
1 A
11966 CTATCTCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (22 bp):
AAAATCTTCTGTTTCGAGGGAA
Found at i:11983 original size:178 final size:178
Alignment explanation
Indices: 11780--12120 Score: 431
Period size: 178 Copynumber: 1.9 Consensus size: 178
11770 CTTAATTTTT
* * * *
11780 GAGGGAAATGATCTCAAGCGAGATAAAATCCTCTGTTTCGAGGGAAACTATCTAAAGCGATATAA
1 GAGGGAAATGATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTAAAGCAAGATAA
* * * *
11845 TATCTTCAAT-TTTGGT-GGAATAC-ATCTCAAGCGAGA-AAAACTCTTCAATTTCAAGGGAAAT
66 AATCTT--ATGTTTCGTGGGAAT-CTATCTCAAGCGAGATAAAA-TCTTCAATTTCAACGGAAAC
11906 TATCCCAAGCGAGACAAAATCATCTGTTTCGAGGGAAAAAATCTTCTGTTTC
127 TATCCCAAGCGAGACAAAATCATCTGTTTCGAGGGAAAAAATCTTCTGTTTC
* * * *
11958 GAGGGAAACT-ATCTCAAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGATA
1 GAGGGAAA-TGATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTAAAGCAAGATA
**
12022 AAATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGATAAAATCTTCTGTTTCAACGGAAACTAT
65 AAATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGATAAAATCTTCAATTTCAACGGAAACTAT
* * * * *
12087 CTCAAGCGAGATAAAATCTTTTGTTTTGAGGGAA
130 CCCAAGCGAGACAAAATCATCTGTTTCGAGGGAA
12121 TGTATCTCAA
Statistics
Matches: 139, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
176 2 0.01
177 6 0.04
178 126 0.91
179 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (178 bp):
GAGGGAAATGATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTAAAGCAAGATAA
AATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGATAAAATCTTCAATTTCAACGGAAACTATC
CCAAGCGAGACAAAATCATCTGTTTCGAGGGAAAAAATCTTCTGTTTC
Found at i:12005 original size:39 final size:39
Alignment explanation
Indices: 11943--20752 Score: 7836
Period size: 39 Copynumber: 228.8 Consensus size: 39
11933 TTCGAGGGAA
11943 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
11982 AAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12021 AAAATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
12060 AAAATCTTCTGTTTCAACGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * ** *
12099 AAAATCTTTTGTTTTGAGGGAATGTATCTCAAGCAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* ** * * * *
12138 AAAATATTCAATTTCAAGGGAAAGTATCTCAAGTG-GTAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-AT
* * *
12177 AAAATATTCTATTTCGAGAGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
12216 AAAATATTCAGTTTC-ATTGGAAAATATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
*
12255 AAAATCTTTTGTTTCGAGGGAAACTATCTCAAAG-GAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGAT
* * * *
12294 AAAATCATATGTTTTGAGGGAAACTATCTCAA-CTGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGC-GAGAT
* * * * * *
12333 AAAATATTCTATTTTGAGAGAAACCATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** ** *
12372 AAAATCTTCTGTTTCGAGTAAAACTATCTTTAGTGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
12411 AAAATATTTTGTTTCAAGGAAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12450 AAAATCTTCTATTTCGAGGGAAAATATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
12489 AAAATCTTTTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
12528 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
12567 AAAATCTTCAGTTTTC-AGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12605 AAAACTCTTCTGATTCGAGGGAAACGATCTCAAGCGAGAC
1 AAAA-TCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
12645 AAAATCTT-TAGATTCGAGGGAAACTATCTCAAGCAAGAT
1 AAAATCTTCT-GTTTCGAGGGAAACTATCTCAAGCGAGAT
*
12684 AAAATCTTCTGTTTCGAGGGAAACTATCACAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12723 AAAATCTTTTGTTTCGTA-TGAAACAATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
*
12762 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
12801 AAGATCTTCTATTTTGAGGGAAACTATCTCAAGCGATAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12840 AAAATCTTCTATTTCGAGTGAAACTATTTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12879 AAAATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
12918 AAAATCTTATGTTTCGAAGGAAACTATCTCAATCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
12957 AAAATCTTCTGTTTCGAGTGAAA-TAATCTCAAGAGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGAT
* *
12996 AAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
13035 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
13074 AAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
13113 AAAATCTTCTGTTTCGAGGGAATCTATCTGAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * **
13151 AATAATTTTATGTTTCGAGGAAAACTATCTCAAGCGTCAT
1 AA-AATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
13191 AAAATCTTCTGTTTCGAGGGAAACTATCTCCACCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
13230 AAAATATTTTGTTTC-ATGGAAAACTATCTCGAGCGAGGT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
*
13269 AAAATCTTCTGTTTCAAGGGTAAA-TATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGAT
13308 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
13347 AAAATCTTTTGTTTCGTA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
*
13386 AAAATCTTCTAG-TTCGAGGGAAACTATCTCAAGCGATAT
1 AAAATCTTCT-GTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
13425 AAGATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
13464 AAAATATTCTATTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
13503 AAAATCTTATGTTTTGAAGGAGACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
13542 AAAATTTTCAGTTTCAAGGAAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** *
13581 AAAATC-TCATGTTTCGAGGGAAACTATCTCAAATGAGAA
1 AAAATCTTC-TGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
13620 AAAAACTACTGTTTTGAGGGAAACTACCTCAAGC-ACGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GAT
* * * * * *
13659 AAAATTTTCTATTTTGAGAGAAACCATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* ** * **
13698 AAAATCTTATGTTTCGATTGAAACTTTCTTTAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
13737 AAAATATTTTATTTCAAGGGAAACTATCTCAAGCTAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
13776 AAAATCTTCTGTTTCGAGGGAAAATATCTCAAG-TATGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GAT
* ** *
13815 AAAATCTTTTGTTTTAAGAGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
13854 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
13893 AAAATCTTCTGTTTTC-AAGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
13931 AAAACTCTTCTGTTTCGAGGGAAACGATCTCAAGCTAGAC
1 AAAA-TCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
13971 AAAATCTT-TAGATTCGATGGAAACTATCCCAAGCGAGAT
1 AAAATCTTCT-GTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
14010 AAAATCTTCTGTTTCGAGTGAAACTATCACAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14049 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGTGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * ** *
14088 AAAATCTTTTCTTTC-ATATGAAACTGTCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
* * *
14127 AAAATATTCTGTTTCGAGAGAAACTATCTCAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
14166 AAGATATTCTATTTTGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14205 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAG
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14244 AAAATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14283 AAAATCTCCTGTTTCGAGGGAAACTATCTCAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * ** * *
14322 AAAATCTTCTATTTTGAGACAAACTATATCAAGCGAAAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
14361 AAAATCTTCTGTTTTGAGGTAAACTATCTTAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
14400 AAAATCTTCTATTCCGA-GAAAACTATCTCAAGCAATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
14438 AAAATCTTAAT-TTTCGTGAGAAACGATCTCAAGCGAGAT
1 AAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
14477 AAAATCTTATGTTTCGAAGGAAA-TAATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGAT
* * *
14516 AAAATTTTCTGTTTCGAGGGAAACTATCTCAAGCGATAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
14555 AAAATCTTCAGTTTCGAGGGAAACAATCTCAAACGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * **
14594 AAAATATTTTGTTTCAATTGAAACTATCTCAAGAC-AGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAG-CGAGAT
* * * *
14633 AAAATCTTCTGATTCGTGGGTATCTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
14672 AAAATCATATGTTTCTAGGGAAACTATCACAAGCTAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
14711 AAAATCTTCTGTTTTGGAGGGAAAGTATCACAAGCAAGAT
1 AAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGAT
** * * * * *
14751 AAAAAATTCTGTTTCAAGGGAAACTATCTCCACCCATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * **
14790 AAAATCTTCTATTTCGATGGAAACTATCGGAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14829 AAAGTCTTCTGTTTC-ATGTGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
*
14867 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
14906 AAAATCTTATATTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
14945 AAAATCTTCTGTTTCGAAGGAAACTATCTCAAGCGA-A-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
14982 AAGAATCTTCTGTTTCGAGGGAAA-TAATCTCAAGCAAGAT
1 AA-AATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGAT
* *
15022 --AATCTTCTGTTTCGAGGGAAACTATCTCAAGCAAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** * *
15059 AAAATCTTCTGTTTCGAGAAAAACTATCTCAAACGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
15098 AAAATATTCTGTTTCAAGGGAAACTATATCAAGCAAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
15137 AAAATATTCGGTTTCGAGGGAATCTATCTGAAGCGAGAAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-AT
* * *
15177 AAAAT-TTCGGTTTCGATGGAAACTATCTCAAGCGACAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
15215 AAAATCTTATGTTTCGAGGGAAAATATCTCAACCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *** ** * *
15253 GAAA-CTATC-GCAACAGAGATAAAATATTTTGTTTCAAG-G-GA-
1 AAAATCT-TCTGTTTC-GAGGGAAACTA-----TCTCAAGCGAGAT
* * * *
15294 AACTATC-TCAAG---CGAGGTAAAATCTTATATTTCAAG-G-GA-
1 AA-AATCTTC-TGTTTCGAGG-GAAA-C---TATCTCAAGCGAGAT
* * ** **** *
15333 AAATATC-TCAG--GCGAGTTAAAATCT-TCTGTTTCGAGAG
1 AAA-ATCTTCTGTTTCGAG-GGAAA-CTATCTCAAGCGAGAT
* ** * ** * **** *
15371 AAAAT-ATCTCATGCGAGATAAAATATTCTGTTTC-ATG-G
1 AAAATCTTCTGTTTCGAGGGAAACTA-TCTCAAGCGA-GAT
* **** * *** **** *
15409 GAAA-CTATCTCAAGCAAAATAAAATCT-TCTGTTTCGA-TT
1 AAAATCT-TCTGTTTC-GAGGGAAA-CTATCTCAAGCGAGAT
* ***** ** * ** *
15448 GAAA-CTATCTCAAGGGAGATAAAATATTCTTTTA-CGAG-G
1 AAAATCT-TCTGTTTCGAGGGAAACTA-TC-TCAAGCGAGAT
* **** * ** * * *
15487 GAAA-CTATCTCAAGCAAGACAAA--ATCTTCTATCTTGAG-G
1 AAAATCT-TCTGTTTCGAGGGAAACTATC-TCAAGC--GAGAT
* **** ** **
15526 GAAA-CTATCTCAAGCGAGACAAAACT-TCT-ATTTCGAGA-
1 AAAATCT-TCTGTTTCGAG-GGAAACTATCTCA-AGCGAGAT
* **** ** * * **** *
15564 GAAA-CTATCTCAAGCGAGATAAAATATTTTGTTTCAAG-T
1 AAAATCT-TCTGTTTCGAGGGAAACTA-TCTCAAGCGAGAT
* *** * **** *
15603 TAAA-CTATCT-AAGCGAGGAAAAATCT-TCTGTTTCGAGCT
1 AAAATCT-TCTGTTTCGAGG-GAAA-CTATCTCAAGCGAGAT
* * ** **** *
15642 AAAAT-ATCT-TAAGT-GAGATAAATTCT-TCTGTTTCGAG-G
1 AAAATCTTCTGT--TTCGAGGGAAA--CTATCTCAAGCGAGAT
**** *** * ** *
15680 AAAA-CTATCTCAAGCGATACAAAATAT-TCTATTTCGAG-G
1 AAAATCT-TCTGTTTCGAGGGAAACTATCTC-A-AGCGAGAT
* ***** * ** **
15719 GAAA-CTATCCCAAGCAAGACAAA--ATCTTCTATTTCGAGGGA-
1 AAAATCT-TCTGTTTCGAGGGAAACTATC-TC-A-AGCGA--GAT
* *** **** *
15760 AACAATC-TCAAG---CGACATAAAATCT-TCTGTTTCGAG-G
1 AA-AATCTTC-TGTTTCGA-GGGAAA-CTATCTCAAGCGAGAT
* ***** *** * *** *
15797 GAAA-CTATCTCAAGAGATATAAAATATTCTGTTTG-GAGAG
1 AAAATCT-TCTGTTTCGAGGGAAACTA-TCT-CAAGCGAGAT
* * * ** **** *
15837 AAACTATATCAAG---CGAGATAAAATCT-TCTGTTTCGAG-G
1 AAAATCT-TC-TGTTTCGAG-GGAAA-CTATCTCAAGCGAGAT
* **** ** **** *
15875 GAAA-CTATCTCAAGCGAGATAAAATCT-TCTGTTCCGAG-G
1 AAAATCT-TCTGTTTCGAG-GGAAA-CTATCTCAAGCGAGAT
**** * *** * ** *
15914 AAAAT-TATCTCAAGCAATATAAA--ATCTTAATTTTTGAG-G
1 AAAATCT-TCTGTTTCGAGGGAAACTATCTCAA---GCGAGAT
* ** **** ** * * **** *
15953 GAAATGATCTCAAGCGAGATAAAATCCTCTGTTTCGAG-G
1 AAAATCTTCTGTTTCGAGGGAAACT-ATCTCAAGCGAGAT
* * * * **** *
15992 GAAA-CTATC----TCAAGCGATATAATATCTTCAATTTTGGT
1 AAAATCT-TCTGTTTCGAGGGA-A-ACTATC-TCAAGCGAGAT
* **** ** * * * *
16030 GGAAAA-CATCTCAAGCGAGAAAAACTCT-TCAATTTCAAG-G
1 --AAAATCTTCTGTTTCGAGGGAAACTATCTCAA--GCGAGAT
* ***** ** * **** *
16070 GAAA-CTATCCCAAGCGAGACAAAATCATCTGTTTCGAGGGAA
1 AAAATCT-TCTGTTTCGAGGGAAACT-ATCTCAAGCGA--GAT
* * * *
16112 AAAATCTTTTGTTTCGACGGAAGCTATCTCAAGTGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
16151 AAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
16190 AAAATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* **
16229 AAAATCTTCTGTTTCAACAGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
16268 AAAATCTTCGGTTTTGAGGGAAAGTATCTCAAGCAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* ** * * *
16307 AAAATATTCAATTTCAAGGGAAAGTATCTCAAGCG-GTAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAG-AT
* * *
16346 AAAATATTCTATTTCGAGAGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
16385 AAAATATTCAGTTTC-ATTGGAAAATATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
*
16424 AAAATCTTTTGTTTCGAGGGAAACTATCTCAAAG-GAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTC-AAGCGAGAT
* * * * *
16463 AAAATCATATGTTTTGAGGGAAACTATCTCAAGTGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
16502 AAAATCTTCTATTTTGAGAGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** **
16541 AAAATCTTCTGTTTCGAGTAAAACTATCTTTAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
16580 AAAATATTTTGTTTCAAGGAAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
16619 AAAATCTTTTGTTTCGAGGGAAAATATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
16658 AAAATCTTTTGTTTC-ATGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
* *
16697 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
16736 AAAATCTTCTGTTTC-AGAGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
16773 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
16811 AAAATCTT-TATTTCGA-GGAAACTATCTCAAGC-AGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
16847 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
16886 AAAATCTT-TGTTTCGATGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
*
16925 AAAATCTTATGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
16964 -AAATCTTCTATATTCGAGGGAAACTATCTCAAGCGATA-
1 AAAATCTTCTGT-TTCGAGGGAAACTATCTCAAGCGAGAT
*
17002 AAAATCTTCTATTTCGA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17040 AAAATCTTATGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
17079 AAAAATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGAA
1 -AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
17119 AAAATCTTCTGTTTC-AAGGAAAC-ATCTCAAGAGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17155 AAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17193 AAAATCTTC--TTTCGAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17229 AAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
*
17268 AAAATCTTCTGTTTCGAGGGAAACTATCTGAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * **
17306 AAAATTTTATGTTTCGAGGAAAACTATCTCAAGCGTCAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17345 AAAATCTTCTGTTTCGA-GGAAACTATCTCAA-CGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
17382 AAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAG--
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17419 AAAATCTTCTGTTTC-AGGGAAAATATCTCAAGCGAG--
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17455 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17494 AAAATCTTTTGTTT--A-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17530 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGC--GAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
17567 -AGATCTT-TATTTTGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
17604 AAAATATTCTATTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
17643 AAAATCTT-AGTTTTGAGGG-AACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17680 AAAATCTTC--TTTC-A-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
17715 AAAATC-TCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17753 AAAATC-TAT-TTT-GAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
17788 AAAATCTTCTATTTCGAGAGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAG-GGAAACTATCTCAAGCGAGAT
* ** **
17828 AAAATCTTATGTTTCGATTGAAACT-TCTTTAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
17866 AAAATATTTTATTTCAAGGGAAA-TATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
17904 AAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
17943 AAAATCTT-TGTTTCAAGAGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAG-GGAAACTATCTCAAGCGAGAT
* *
17981 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18020 AAAAT-TTCTGTTTC-AAGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18056 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18095 AAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
18134 AAAATCTTCTGTTTCGAGGGAAACTATCACAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18173 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
18212 AAAATCTT-T-TTTC-A-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18247 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
18286 AAGATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18325 AAAATCTTCTATTTCGA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
18363 AAAATCTTATGTTTCGAAGGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
18402 AAAATCTTCTGTTTCGAGTGAAACAATCTCAAGAGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18441 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
18480 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
18518 AAAATCTTCTGTTTCGAAGGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
*
18557 AAAATCTTCTGTTTCGAGGGAAACTATCTTAA--GAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
18593 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGTGACAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
18632 AAAATCTTCTGTTTCGAGGAAAACTATCTCAACCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
18671 AAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAGGT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
18710 AAAATCTTTTGTTTCTAGGGTAAA-TATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGAT
*
18749 AAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*****
18788 AAAA--AAAAATTTCGTA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
* ** * *
18825 AAAATCTCCTGTTTCGATAGAAACTATCTCAA--TATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
18862 -AAATCTT-TGTTT-GAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
18898 AAAATCTTCTATTTCGAGTGAAATTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
18937 AAAATCTTATG-TTCGAAGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
18975 AAAATCTTCTGTTTCGAGGGAAACTATCTCAA-AGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
19012 AAAATCTTCTGTTTCGAGGGAAA-TATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19049 AAAATCTTCTGTTTCGA-GGAAAATATCTCAA-CG-GAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
19085 AAAATCTTCTATTTTGAGGGAAACTATCTCAAGCGATA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
19123 AAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19161 AAAATCTTCTGTTTCGAGGGAAACTATCTCATGTGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19200 AAAATCTTCTG-TTCGA-GGAAACTATCTCAAGCAATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19237 AAAATCTTAT-TTT-GA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19273 AAAATCTTCTGTTTCGAGGGAAACTATCTTAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
19312 -AAATCTTC--TTT-GAGGGAAAACTATCTCAA--GAGA-
1 AAAATCTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGAT
*
19345 AAAATCTTC--TTTCGAAAGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
* *
19382 AAAATCTTCTGTTTCGAGGGAAA-TATCTCAACCTAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19420 AAAAAATCTTCTG-TTC-AAGGAAACTATCTCAAGCGAGAT
1 --AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19459 AAAATCTTAT-TTT---GGGAATCTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19494 AAAATCTT-TGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19532 AAAATCTTCTGTTTCGAGGGAAAGTATCTCAAGCAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19571 AAAATATTCTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
19610 AAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
19648 AAAATCTTCTGTTTC-A-GGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19684 AAAA---TC---TTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19717 AAAATATTTTGTTTCGA-GGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19755 AAAATCTTCTGTTTTGAGGGAAACTATCTCAAGCGAG--
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * * *
19792 AAAATATTCTATTTC-A-AGAAACTATCTCATGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19829 AAAATCTTCTGTTT--AGGGAAACTATCT-TAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
19865 AAAATATT-TGTTTCAAGGGAAACTATCTCAAACAAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** *
19903 AAAATCTTCTGTTTCGAAAGAAACTATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
19942 AAAATCTTCTGTTTCGAGGGAAAATATCTCAAGCGAGAA
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
*
19981 AAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20020 AAAATCTTTTATTTCGAGGAAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20059 AAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20098 AAAATGTCCTGTTTCGAAGGAAACTATCTCAAGCGAGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20136 ATAAATCTTCTGTTTCGAAGGAAACTATCTAAAGCGAGAA
1 A-AAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
20176 AAAACCTTCTGTTTTGAGGGAAACTATCACAAGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20215 AAAATCTTCTATTTCGAGGGAAACTATCTCATGCGAGAC
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20254 AAAATGTTCTATTTAGAGGGAAACTATCTCAAGCGATGA-
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GAT
*
20293 AAAATCTTATGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20332 AAAATCTTCTGTTTCGTGAGAAACTATCTCACGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20371 AAAATATTCTGTTTCAAGGGAAACCATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20410 AAAATCTTTTGTTTC-ATGGGAAACTATTTCAAGCAAGAT
1 AAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGAT
* *
20449 AAAATAC-TGTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAAT-CTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
20488 AAAATCTTCTGTTTCGAGGGATACTATCTCAAGAGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* *
20527 AAAATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20566 -AAATCTT-TGTTTCGAGTGAAACTATTTCAAGCGATAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * * *
20603 AAAATTTTCTATTTAGAGGGAAACTATCTCAAGTGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
** * *
20642 AAAAAATTCTATTT-GAATGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGAT
* * *
20681 AAAATCTTCCGTTTCGAGGGAATCTATCTGAAGCGAGAT
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
* * *
20720 AAAATTTTCTGTTTTGAGGAAAACTATCTCAAG
1 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAG
20753 ATGTTAAATC
Statistics
Matches: 7398, Mismatches: 1049, Indels: 648
0.81 0.12 0.07
Matches are distributed among these distances:
30 3 0.00
31 1 0.00
32 20 0.00
33 6 0.00
34 34 0.00
35 171 0.02
36 331 0.04
37 581 0.08
38 924 0.12
39 5060 0.68
40 200 0.03
41 31 0.00
42 20 0.00
43 14 0.00
44 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (39 bp):
AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
Found at i:12011 original size:139 final size:139
Alignment explanation
Indices: 11804--12074 Score: 309
Period size: 139 Copynumber: 1.9 Consensus size: 139
11794 CAAGCGAGAT
* * * **
11804 AAAATCCTCTGTTTCGAGGGAAACTATCTAAAGCGATATAATATCTTCAATTTTGGTGGAATACA
1 AAAATCCTCTGTTTCGAGGGAAACTATCTAAAGCGAGATAAAATATTCAATTTAAGTGGAATACA
*
11869 TCTCAAGCGAGA-AAAACTCTTCA-ATTTCAAGGGAAAT-TATCCCAAGCGAGACAAAATCATCT
66 TCTCAAGCAAGATAAAA-TCTT-ATATTTCAAGGG-AATCTATCCCAAGCGAGACAAAATCATCT
11931 GTTTCGAGGGAA
128 GTTTCGAGGGAA
* * ***
11943 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCAAGT-GAA-AC
1 AAAATCCTCTGTTTCGAGGGAAACTATCTAAAGCGAGATAAAATATTCAATTT-AAGTGGAATAC
* ** * * *
12006 TATCTCAAGCAAGATAAAATCTTATGTTTCGTGGGAATCTATCTCAAGCGAGATAAAATCTTCTG
65 -ATCTCAAGCAAGATAAAATCTTATATTTCAAGGGAATCTATCCCAAGCGAGACAAAATCATCTG
12071 TTTC
129 TTTC
12075 AACGGAAACT
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
138 6 0.05
139 98 0.89
140 6 0.05
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (139 bp):
AAAATCCTCTGTTTCGAGGGAAACTATCTAAAGCGAGATAAAATATTCAATTTAAGTGGAATACA
TCTCAAGCAAGATAAAATCTTATATTTCAAGGGAATCTATCCCAAGCGAGACAAAATCATCTGTT
TCGAGGGAA
Found at i:12907 original size:22 final size:22
Alignment explanation
Indices: 12882--12946 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
12872 GCGAGATAAA
12882 ATCTTATGTTTCGAAGGAAACT
1 ATCTTATGTTTCGAAGGAAACT
* * **
12904 ATCTCAAG---CG-A-GAAAAA
1 ATCTTATGTTTCGAAGGAAACT
12921 ATCTTATGTTTCGAAGGAAACT
1 ATCTTATGTTTCGAAGGAAACT
12943 ATCT
1 ATCT
12947 CAATCGAGAA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 10 0.33
18 1 0.03
19 2 0.07
20 2 0.07
21 1 0.03
22 14 0.47
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (22 bp):
ATCTTATGTTTCGAAGGAAACT
Found at i:13018 original size:22 final size:22
Alignment explanation
Indices: 12954--13018 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
12944 TCTCAATCGA
12954 GAAAAAATCTTCTGTTTCGAGT
1 GAAAAAATCTTCTGTTTCGAGT
* ** *
12976 GAAATAATC-TC----AAGAGA
1 GAAAAAATCTTCTGTTTCGAGT
12993 GAAAAAATCTTCTGTTTCGAGT
1 GAAAAAATCTTCTGTTTCGAGT
13015 GAAA
1 GAAA
13019 CTATCTCAAG
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 11 0.37
18 2 0.07
21 2 0.07
22 15 0.50
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (22 bp):
GAAAAAATCTTCTGTTTCGAGT
Found at i:15256 original size:19 final size:19
Alignment explanation
Indices: 15229--15279 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
15219 TCTTATGTTT
* *
15229 CGAGGGAAAATATCTCAAC
1 CGAGAGAAAATATCGCAAC
*
15248 CGAGAGAAACTATCGCAAC
1 CGAGAGAAAATATCGCAAC
* *
15267 AGAGATAAAATAT
1 CGAGAGAAAATAT
15280 TTTGTTTCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (19 bp):
CGAGAGAAAATATCGCAAC
Found at i:15257 original size:58 final size:58
Alignment explanation
Indices: 15195--15309 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 58
15185 GGTTTCGATG
* * *
15195 GAAACTATCTCAAGC-GACATAAAATCTTATGTTTCGAGGGAAAATATCTCAACCGAGA
1 GAAACTATCGCAA-CAGACATAAAATATTATGTTTCAAGGGAAAATATCTCAACCGAGA
* * * *
15253 GAAACTATCGCAACAGAGATAAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAG
1 GAAACTATCGCAACAGACATAAAATATTATGTTTCAAGGGAAAATATCTCAACCGAG
15310 GTAAAATCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
57 1 0.02
58 48 0.98
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.24
Consensus pattern (58 bp):
GAAACTATCGCAACAGACATAAAATATTATGTTTCAAGGGAAAATATCTCAACCGAGA
Found at i:15381 original size:175 final size:175
Alignment explanation
Indices: 15073--15421 Score: 400
Period size: 175 Copynumber: 2.0 Consensus size: 175
15063 TCTTCTGTTT
*
15073 CGAGAAAAACTATCTCAAACGAGACAAAATATTCTGTTTCAAGGGAAACTATATCAAGCAAGAAA
1 CGAGAAAAACTATCGCAAACGAGACAAAATATTCTGTTTCAAGGGAAACTATATCAAGCAAGAAA
* * * ** * *
15138 AAATATTCGGTTTCGAGGGAATCTATCTGAAGCGAGAAAAAAATTTCGGTTTCGATGGAAACTAT
66 AAATATTAGATTTCAAGGGAAAATATCTCAAGCGAGAAAAAAATTTCGGTTTCGATGGAAAATAT
*
15203 CTCAAGCGACATAAAATCTTATGTTTCGA-GGGAAAATATCTCAAC
131 CTCAAGCGACATAAAATATTATGTTTC-ATGGGAAAATATCTCAAC
* * * * * **
15248 CGAGAGAAACTATCGC-AACAGAGATAAAATATTTTGTTTCAAGGGAAACTATCTCAAGCGAGGT
1 CGAGAAAAACTATCGCAAAC-GAGACAAAATATTCTGTTTCAAGGGAAACTATATCAAGCAAGAA
* * * ** *
15312 AAAATCTTATATTTCAAGGGAAAATATCTCAGGCGAG-TTAAAATCTTCTGTTTCGA-GAGAAAA
65 AAAATATTAGATTTCAAGGGAAAATATCTCAAGCGAGAAAAAAAT-TTCGGTTTCGATG-GAAAA
* * * *
15375 TATCTCATGCGAGATAAAATATTCTGTTTCATGGGAAACTATCTCAA
128 TATCTCAAGCGACATAAAATATTATGTTTCATGGGAAAATATCTCAA
15422 GCAAAATAAA
Statistics
Matches: 144, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
174 10 0.07
175 134 0.93
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (175 bp):
CGAGAAAAACTATCGCAAACGAGACAAAATATTCTGTTTCAAGGGAAACTATATCAAGCAAGAAA
AAATATTAGATTTCAAGGGAAAATATCTCAAGCGAGAAAAAAATTTCGGTTTCGATGGAAAATAT
CTCAAGCGACATAAAATATTATGTTTCATGGGAAAATATCTCAAC
Found at i:15393 original size:19 final size:19
Alignment explanation
Indices: 15332--15396 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
15322 ATTTCAAGGG
* *
15332 AAAATATCTCAGGCGAGTT
1 AAAATATCTCATGCGAGAT
* ** * *
15351 AAAATCTTCTGTTTCGAGAG
1 AAAAT-ATCTCATGCGAGAT
15371 AAAATATCTCATGCGAGAT
1 AAAATATCTCATGCGAGAT
15390 AAAATAT
1 AAAATAT
15397 TCTGTTTCAT
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
19 21 0.64
20 12 0.36
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (19 bp):
AAAATATCTCATGCGAGAT
Found at i:15581 original size:19 final size:20
Alignment explanation
Indices: 15526--15582 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
15516 TATCTTGAGG
15526 GAAACTATCTCAAGCGAGAC
1 GAAACTATCTCAAGCGAGAC
* **
15546 AAAACT-TCT-ATTTCGAGA-
1 GAAACTATCTCA-AGCGAGAC
15564 GAAACTATCTCAAGCGAGA
1 GAAACTATCTCAAGCGAGA
15583 TAAAATATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 7
0.68 0.15 0.17
Matches are distributed among these distances:
18 6 0.21
19 16 0.57
20 6 0.21
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAACTATCTCAAGCGAGAC
Found at i:16124 original size:22 final size:22
Alignment explanation
Indices: 16090--16133 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
16080 CAAGCGAGAC
*
16090 AAAATCATCTGTTTCGAGGGAA
1 AAAATCATCTGTTTCGACGGAA
* *
16112 AAAATCTTTTGTTTCGACGGAA
1 AAAATCATCTGTTTCGACGGAA
16134 GCTATCTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (22 bp):
AAAATCATCTGTTTCGACGGAA
Found at i:16254 original size:178 final size:177
Alignment explanation
Indices: 15959--16290 Score: 432
Period size: 178 Copynumber: 1.9 Consensus size: 177
15949 GAGGGAAATG
* * * * *
15959 ATCTCAAGCGAGATAAAATCCTCTGTTTCGAGGGAAACTATCTCAAGCGATATAATATCTTCAAT
1 ATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTCAAGCAAGATAAAATCTT-AAT
* * **
16024 TTTGGTGGAAAACATCTCAAGCGAGAAAAACTCTTCAATTTCAAGGGAAACTATCCCAAGCGAGA
65 TTTCGTGGAAAACATCTCAAGCGAGAAAAAATCTTCAATTTCAACAGAAACTATCCCAAGCGAGA
*
16089 CAAAATCATCTGTTTCGAGGGAAAAAATCTTTTGTTTCGACGGAAGCT
130 CAAAATCATCGGTTTCGAGGGAAAAAATCTTTTGTTTCGACGGAAGCT
* * * *
16137 ATCTCAAGTGAGATAAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGATAAAATCTT-ATG
1 ATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTCAAGCAAGATAAAATCTTAAT-
* * ** *
16201 TTTCGTGGGAATCTATCTCAAGCGAGAAAAAATCTTCTGTTTCAACAGAAACTATCTCAAGCGAG
65 TTTCGTGGAAAAC-ATCTCAAGCGAGAAAAAATCTTCAATTTCAACAGAAACTATCCCAAGCGAG
* * *
16266 ATAAAATCTTCGGTTTTGAGGGAAA
129 ACAAAATCATCGGTTTCGAGGGAAA
16291 GTATCTCAAG
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
176 2 0.02
177 10 0.08
178 118 0.91
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (177 bp):
ATCTCAAGCGAGATAAAATACTCTGTTTCAAGGGAAACTATCTCAAGCAAGATAAAATCTTAATT
TTCGTGGAAAACATCTCAAGCGAGAAAAAATCTTCAATTTCAACAGAAACTATCCCAAGCGAGAC
AAAATCATCGGTTTCGAGGGAAAAAATCTTTTGTTTCGACGGAAGCT
Found at i:17304 original size:19 final size:19
Alignment explanation
Indices: 17205--17304 Score: 51
Period size: 19 Copynumber: 5.2 Consensus size: 19
17195 AATCTTCTTT
*
17205 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTGAAG
** ***
17224 CGAGAAAAATCT-TCTGTTT
1 CGAGGGAAA-CTATCTGAAG
*
17243 CGAAGGGAAACTATCTCAAG
1 CG-AGGGAAACTATCTGAAG
** ***
17263 CGAGAAAAATCT-TCTGTTT
1 CGAGGGAAA-CTATCTGAAG
17282 CGAGGGAAACTATCTGAAG
1 CGAGGGAAACTATCTGAAG
17301 CGAG
1 CGAG
17305 AAAAATTTTA
Statistics
Matches: 53, Mismatches: 23, Indels: 10
0.62 0.27 0.12
Matches are distributed among these distances:
18 2 0.04
19 37 0.70
20 14 0.26
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (19 bp):
CGAGGGAAACTATCTGAAG
Found at i:19071 original size:19 final size:19
Alignment explanation
Indices: 19012--19072 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
19002 CTCAAAGAGA
19012 AAAATCTTCTGTTTCGAGG
1 AAAATCTTCTGTTTCGAGG
* * **** *
19031 GAAAT-ATCTCAAGCGAGA
1 AAAATCTTCTGTTTCGAGG
19049 AAAATCTTCTGTTTCGAGG
1 AAAATCTTCTGTTTCGAGG
19068 AAAAT
1 AAAAT
19073 ATCTCAACGG
Statistics
Matches: 27, Mismatches: 14, Indels: 2
0.63 0.33 0.05
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (19 bp):
AAAATCTTCTGTTTCGAGG
Found at i:19694 original size:17 final size:16
Alignment explanation
Indices: 19671--19721 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 16
19661 TCAGGAAACT
19671 ATCTCAAGCGAGAAAA
1 ATCTCAAGCGAGAAAA
*
19687 ATCTTCAAG-G-GAAACT
1 ATC-TCAAGCGAGAAA-A
19703 ATCTCAAGCGAGATAAA
1 ATCTCAAGCGAGA-AAA
19720 AT
1 AT
19722 ATTTTGTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
15 9 0.32
16 8 0.29
17 9 0.32
18 2 0.07
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (16 bp):
ATCTCAAGCGAGAAAA
Found at i:19706 original size:16 final size:16
Alignment explanation
Indices: 19664--19712 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
19654 TTCTGTTTCA
19664 GGAAACTATCTCAAGC
1 GGAAACTATCTCAAGC
*
19680 GAGAAA-AATCTTCAAG-
1 G-GAAACTATC-TCAAGC
19696 GGAAACTATCTCAAGC
1 GGAAACTATCTCAAGC
19712 G
1 G
19713 AGATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 9 0.33
16 9 0.33
17 9 0.33
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.18
Consensus pattern (16 bp):
GGAAACTATCTCAAGC
Found at i:21329 original size:2 final size:2
Alignment explanation
Indices: 21318--21350 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
21308 TTCTACTAAC
21318 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21351 CATTTCCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:21773 original size:18 final size:18
Alignment explanation
Indices: 21746--21780 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21736 CCACTATGAA
21746 ATGTCCCGAAGGACCACT
1 ATGTCCCGAAGGACCACT
*
21764 ATGTCTCGAAGGACCAC
1 ATGTCCCGAAGGACCAC
21781 GTAGAACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.31, G:0.23, T:0.17
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACT
Found at i:24180 original size:20 final size:21
Alignment explanation
Indices: 24155--24195 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24145 GGATCAATTC
*
24155 GTCTTG-TTGTTTTCAATCTT
1 GTCTTGCTTGATTTCAATCTT
*
24175 GTCTTGCTTGATTTGAATCTT
1 GTCTTGCTTGATTTCAATCTT
24196 CTTGAATGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.56
Consensus pattern (21 bp):
GTCTTGCTTGATTTCAATCTT
Found at i:24322 original size:21 final size:21
Alignment explanation
Indices: 24298--24362 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 21
24288 ATTTGATCGA
24298 TTTTCTTTCT-TCTTTATTTCT
1 TTTTCTTTCTCTCTTT-TTTCT
24319 TTTTCTTTCTCTCTTTTTTCCT
1 TTTTCTTTCTCTCTTTTTT-CT
*
24341 CTCTTTTTTTCTCTTCTTTTTT
1 -T-TTTCTTTCTC-TCTTTTTT
24363 TCTCTCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
21 13 0.34
22 7 0.18
23 1 0.03
24 9 0.24
25 8 0.21
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCTTTCTCTCTTTTTTCT
Found at i:24344 original size:12 final size:11
Alignment explanation
Indices: 24303--24405 Score: 83
Period size: 11 Copynumber: 9.3 Consensus size: 11
24293 ATCGATTTTC
24303 TTTCT-TCTTT
1 TTTCTCTCTTT
24313 ATTTCT-T-TTT
1 -TTTCTCTCTTT
24323 CTTTCTCTCTTT
1 -TTTCTCTCTTT
24335 TTTCCTCTCTTTT
1 TTT-CTCTC-TTT
24348 TTTCTCTTCTTTT
1 TTTCTC-TC-TTT
24361 TTTCTCTCTTT
1 TTTCTCTCTTT
*
24372 TTT-TCTCGTGT
1 TTTCTCTC-TTT
24383 TTTCTCTCTTT
1 TTTCTCTCTTT
*
24394 ATTC-CT-TTT
1 TTTCTCTCTTT
24403 TTT
1 TTT
24406 GTTTTTTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 16
0.79 0.05 0.16
Matches are distributed among these distances:
9 5 0.06
10 14 0.17
11 26 0.32
12 17 0.21
13 18 0.22
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (11 bp):
TTTCTCTCTTT
Found at i:24347 original size:25 final size:23
Alignment explanation
Indices: 24298--24393 Score: 92
Period size: 22 Copynumber: 4.1 Consensus size: 23
24288 ATTTGATCGA
24298 TTTTCTTTCT-TCTTTATTTCT-T-
1 TTTT-TTTCTCTCTTT-TTTCTCTC
*
24320 TTTCTTTCTCTCTTTTTTCCTCTC
1 TTTTTTTCTCTCTTTTTT-CTCTC
24344 TTTTTTTCTCTTCTTTTTTTCTCTC
1 TTTTTTTCTC-TC-TTTTTTCTCTC
* *
24369 TTTTTTTCTC-GTGTTTTCTCTC
1 TTTTTTTCTCTCTTTTTTCTCTC
24391 TTT
1 TTT
24394 ATTCCTTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
21 8 0.12
22 23 0.36
23 1 0.02
24 9 0.14
25 17 0.27
26 6 0.09
ACGTcount: A:0.01, C:0.24, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTTTTCTCTCTTTTTTCTCTC
Found at i:24385 original size:13 final size:12
Alignment explanation
Indices: 24298--24378 Score: 96
Period size: 12 Copynumber: 6.8 Consensus size: 12
24288 ATTTGATCGA
24298 TTTTCTTTCT-TC
1 TTTT-TTTCTCTC
*
24310 TTTATTTCT-T-
1 TTTTTTTCTCTC
*
24320 TTTCTTTCTCTC
1 TTTTTTTCTCTC
*
24332 TTTTTTCCTCTC
1 TTTTTTTCTCTC
24344 TTTTTTTCTCTTC
1 TTTTTTTCTC-TC
24357 TTTTTTTCTCTC
1 TTTTTTTCTCTC
24369 TTTTTTTCTC
1 TTTTTTTCTC
24379 GTGTTTTCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
10 8 0.13
11 7 0.11
12 34 0.56
13 12 0.20
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTTTCTCTC
Found at i:24391 original size:37 final size:37
Alignment explanation
Indices: 24319--24392 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
24309 CTTTATTTCT
*
24319 TTTTCTTTCTCTCTTTTTTCCTCTCTTTTTTTCTCTTC
1 TTTTCTTTCTCTCTTTTTT-CTCTCTTTTTCTCTCTTC
24357 TTTT-TTTCTCTCTTTTTT-TCTCGTGTTTTCTCTCTT
1 TTTTCTTTCTCTCTTTTTTCTCTC-T-TTTTCTCTCTT
24393 TATTCCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
35 4 0.12
36 1 0.03
37 24 0.73
38 4 0.12
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (37 bp):
TTTTCTTTCTCTCTTTTTTCTCTCTTTTTCTCTCTTC
Found at i:28426 original size:51 final size:48
Alignment explanation
Indices: 28366--28460 Score: 129
Period size: 51 Copynumber: 1.9 Consensus size: 48
28356 AAATAAAGTT
28366 AGTAACTAAATCAGAAA-TAAACAATGACAAAAATTCAAAAATTAAAATGAC
1 AGTAACTAAATCAGAAACT-AACAATGAC-AAAATT-AAAAA-TAAAATGAC
* *
28417 AGTAGCTAAATCAGAAACTAACAATGACTAAATTAAAAATAAAA
1 AGTAACTAAATCAGAAACTAACAATGACAAAATTAAAAATAAAA
28461 CAAAACAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
48 5 0.12
49 5 0.12
50 5 0.12
51 25 0.61
52 1 0.02
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.20
Consensus pattern (48 bp):
AGTAACTAAATCAGAAACTAACAATGACAAAATTAAAAATAAAATGAC
Found at i:30275 original size:39 final size:38
Alignment explanation
Indices: 30189--30278 Score: 128
Period size: 38 Copynumber: 2.4 Consensus size: 38
30179 TTTTGTTCGG
*
30189 GTCGGGTAGGG-TTTTTTAAGTGTGATATTCGGGACGA
1 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGACGA
* *
30226 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCGG
1 GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGACGA
*
30264 GTCAGGTTCGGGTTT
1 GTC-GGGTCGGGTTT
30279 AGGGTGAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
37 10 0.21
38 27 0.57
39 10 0.21
ACGTcount: A:0.13, C:0.10, G:0.39, T:0.38
Consensus pattern (38 bp):
GTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGACGA
Found at i:30561 original size:202 final size:195
Alignment explanation
Indices: 30186--30577 Score: 613
Period size: 202 Copynumber: 2.0 Consensus size: 195
30176 TTATTTTGTT
30186 CGGGTCGGGTAGGGTTTTTTAAGTGTGATATTCGGGACGAGTCGGGTCGGGTTTTTTTAAGTGTG
1 CGGGTCGGGTAGGGTTTTTTAAGTGTGATATTCGGGACGAGTCGGGTCGGGTTTTTTTAAGTGTG
* * * * *
30251 ATATTCGGGTCGGGTCAGGTTCGGGTTTAGGGTGAAAAAATGGGCTGACCCGAAAATATATATAA
66 ATATTCAGGTCGGGTCAGGGTCGGGTTTAGGGTGAAAAAACGGACCGACCCGAAAATATATATAA
* *
30316 TTTGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATATTTTTTTATTATTTTGGGC
131 TTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTATTATTTTGGGC
* * * *
30381 CGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTTGGGTTGGGTTTTTTTAAGTGTG
1 CGGGTCGGGTAGGGTTTTTTAAGTGTGATATTCGGGACGAGTCGGGTCGGGTTTTTTTAAGTGTG
*
30446 ATAATCGGGTCAGGTCGGGTCGGGGTCGGGTTTAGGGTGAAAAAAACCGGACCGACCCGAAAATA
66 AT-AT----TCAGGTCGGGTCAGGGTCGGGTTTAGGGTG-AAAAAA-CGGACCGACCCGAAAATA
30511 TATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTATTAT
124 TATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTATTAT
30576 TT
189 TT
30578 CGGGTCGGTC
Statistics
Matches: 178, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
195 63 0.35
196 2 0.01
200 27 0.15
201 6 0.03
202 80 0.45
ACGTcount: A:0.24, C:0.10, G:0.30, T:0.36
Consensus pattern (195 bp):
CGGGTCGGGTAGGGTTTTTTAAGTGTGATATTCGGGACGAGTCGGGTCGGGTTTTTTTAAGTGTG
ATATTCAGGTCGGGTCAGGGTCGGGTTTAGGGTGAAAAAACGGACCGACCCGAAAATATATATAA
TTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTATTATTTTGGGC
Found at i:30609 original size:195 final size:192
Alignment explanation
Indices: 30176--30620 Score: 558
Period size: 195 Copynumber: 2.3 Consensus size: 192
30166 GGATGAAACT
* * * * *
30176 TTATTTTGTTCGGGTCGGGTAGGGTTTTTTAAGTGTGATATTCGGGACGAGTCGGGTCGGGTTTT
1 TTATTTTG--CGGGTCGGGTCGGGATTTCTAAGTATGATATTCGGGTCGAGTCGGGTCGGGTTTT
* * * * *
30241 TTTAAGTGTGATATTCGGGTCGGGTCAGGTTCGGGTTTAGGGTGAAAAAATGGGCTGACCCGAAA
64 TTTAAGTGTGATATTCAGGTCGGGTCAGGGTCGGGTTTAGGGTGAAAAAACGGACCGACCCGAAA
* *
30306 ATATATATAATTTGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATATTTTTTTA
129 ATATATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTA
* * * * *
30370 TTATTTTGGGCCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAGTTGGGTTGGGTTT
1 TTATTTT--G-CGGGTCGGGTCGGGATTTCTAAGTATGATATTCGGGTCGAGTCGGGTCGGGTTT
*
30435 TTTTAAGTGTGATAATCGGGTCAGGTCGGGTCGGGGTCGGGTTTAGGGTGAAAAAAACCGGACCG
63 TTTTAAGTGTGAT-AT----TCAGGTCGGGTCAGGGTCGGGTTTAGGGTG-AAAAAA-CGGACCG
30500 ACCCGAAAATATATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAA
121 ACCCGAAAATATATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAA
30565 TTTTTTA
186 TTTTTTA
* *
30572 TTA-TTT-CGGGTC-GGTC-GGATTTCTAATTCAT-ATATTCGGGTCGTGTCGG
1 TTATTTTGCGGGTCGGGTCGGGATTTCTAAGT-ATGATATTCGGGTCGAGTCGG
30621 ATGAAACTTT
Statistics
Matches: 222, Mismatches: 19, Indels: 19
0.85 0.07 0.07
Matches are distributed among these distances:
194 7 0.03
195 88 0.40
196 8 0.04
197 6 0.03
200 27 0.12
201 9 0.04
202 77 0.35
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.37
Consensus pattern (192 bp):
TTATTTTGCGGGTCGGGTCGGGATTTCTAAGTATGATATTCGGGTCGAGTCGGGTCGGGTTTTTT
TAAGTGTGATATTCAGGTCGGGTCAGGGTCGGGTTTAGGGTGAAAAAACGGACCGACCCGAAAAT
ATATATAATTCGGGTCGGGTCGGATTAAGTCAATGTTTTTATTAAATAAAAATAATTTTTTA
Found at i:30709 original size:38 final size:38
Alignment explanation
Indices: 30641--30729 Score: 128
Period size: 38 Copynumber: 2.4 Consensus size: 38
30631 ATTTTGTTCG
*
30641 GGTCGGGTCGGG-ATTTTTAAGTGTGATATTCGGGTCGA
1 GGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGT-GA
* *
30679 -GTCGGGTCGGGTTTTTTTAAGTGTGCTATTCGGGTTA
1 GGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTGA
30716 GGTCGGGTCGGGTT
1 GGTCGGGTCGGGTT
30730 CGGGTTTATG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
37 12 0.26
38 34 0.74
ACGTcount: A:0.11, C:0.11, G:0.40, T:0.37
Consensus pattern (38 bp):
GGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTGA
Found at i:31101 original size:20 final size:20
Alignment explanation
Indices: 31074--31122 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
31064 TATAATTTAT
31074 TAAAATGAATAATCAATTAA
1 TAAAATGAATAATCAATTAA
*
31094 TGAAATGAATAATCAATTAA
1 TAAAATGAATAATCAATTAA
31114 TAAAATGAA
1 TAAAATGAA
31123 AATTTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (20 bp):
TAAAATGAATAATCAATTAA
Found at i:31306 original size:16 final size:17
Alignment explanation
Indices: 31280--31323 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
31270 TATGGAATTG
31280 GATTCAATTCC-T-ACA
1 GATTCAATTCCTTCACA
31295 GATTCTAATTCCTTCACA
1 GATTC-AATTCCTTCACA
31313 GATTCCAATTC
1 GATT-CAATTC
31324 TCTCATAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.20
16 6 0.24
17 1 0.04
18 12 0.48
19 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (17 bp):
GATTCAATTCCTTCACA
Found at i:38786 original size:137 final size:137
Alignment explanation
Indices: 38603--38976 Score: 579
Period size: 137 Copynumber: 2.7 Consensus size: 137
38593 GATAACATAG
**
38603 TTCCTTCACGTTGAGAAAGTCTGATTGTCTGAATATGACACTACTCCTTCGCGTTGAGGAGATCT
1 TTCCTTCACGTTGAGAAAGTCTGATTGTCTGAGGATGACACTACTCCTTCGCGTTGAGGAGATCT
* * *
38668 GGTCGGTGGATGACATCGTTCCTTCGTGTTGAGGATGTCTATCCATATTTGGATAATTTGGAGAC
66 GGTCGGTGGATGACATTGTTCCTTCGTGTTGAGGATGTCTAGCCATATTTGAATAATTTGGAGAC
*
38733 AACATGA
131 AACACGA
* * * * *
38740 TTCCTTCATGTTGAGGAAGTCTAATTGTTTGAGGATGATACTACTCCTTCGCGTTGAGGAGATCT
1 TTCCTTCACGTTGAGAAAGTCTGATTGTCTGAGGATGACACTACTCCTTCGCGTTGAGGAGATCT
** **
38805 AATCGGTGGATGACATTGTTCCTTCGCATTGAGGATGTCTAGCCATATTTGAATAATTTGGAGAC
66 GGTCGGTGGATGACATTGTTCCTTCGTGTTGAGGATGTCTAGCCATATTTGAATAATTTGGAGAC
38870 AACACGA
131 AACACGA
*
38877 TTCCTTCACGTTGAGAAAGTCTGATTGTCCGAGGATGACACTACTCCTTCGCGTTGAGGAGATCT
1 TTCCTTCACGTTGAGAAAGTCTGATTGTCTGAGGATGACACTACTCCTTCGCGTTGAGGAGATCT
*
38942 GGTCGATGGAAT-ACATTGTTCCTTCGTGTTGAGGA
66 GGTCGGTGG-ATGACATTGTTCCTTCGTGTTGAGGA
38977 ATTTTAGTTA
Statistics
Matches: 210, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
137 208 0.99
138 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
TTCCTTCACGTTGAGAAAGTCTGATTGTCTGAGGATGACACTACTCCTTCGCGTTGAGGAGATCT
GGTCGGTGGATGACATTGTTCCTTCGTGTTGAGGATGTCTAGCCATATTTGAATAATTTGGAGAC
AACACGA
Found at i:39381 original size:102 final size:102
Alignment explanation
Indices: 39273--39495 Score: 272
Period size: 102 Copynumber: 2.2 Consensus size: 102
39263 AGTGAGATAA
* *
39273 AATTTTGTTTCAAGTGAAACAATTTCAAAATTTTTGTTTCA-AGGGAAAATTATCTCAAGCAAGA
1 AATTTTGTTTCAAGTGAAACAATTTCAAAATTTGTGTTT-AGAGGGAAAACTATCTCAAGCAAGA
** * * * * *
39337 TGAATTTTGTTTTTAGGA-ATACAATCT-AAAGTGATATC
65 CAAAATTTATTTTGA-GACAAACAATCTCAAA-TGAGATC
* * *
39375 AATTTTGTTTCAAGTGAAACAATTTTAAAATTTGTGTTTAGAGGGAAAACTGTCTCACGCAAGAC
1 AATTTTGTTTCAAGTGAAACAATTTCAAAATTTGTGTTTAGAGGGAAAACTATCTCAAGCAAGAC
*
39440 AAAATTTATTTTGAGACAAATAATCTCAAATGAGATC
66 AAAATTTATTTTGAGACAAACAATCTCAAATGAGATC
*
39477 AATTTTGTTTCAAATGAAA
1 AATTTTGTTTCAAGTGAAA
39496 TTATCTCAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
101 3 0.03
102 98 0.94
103 3 0.03
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (102 bp):
AATTTTGTTTCAAGTGAAACAATTTCAAAATTTGTGTTTAGAGGGAAAACTATCTCAAGCAAGAC
AAAATTTATTTTGAGACAAACAATCTCAAATGAGATC
Found at i:41886 original size:26 final size:25
Alignment explanation
Indices: 41836--41891 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
41826 TTTTATTTTC
*
41836 AAAA-TTTGAAAAAGATCAATTAAA
1 AAAATTTTGAAAAAGATCAATCAAA
* * *
41860 ATAATTTTGAAAAATGTTTAATCAAA
1 AAAATTTTGAAAAA-GATCAATCAAA
41886 AAAATT
1 AAAATT
41892 GAAAAAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 9 0.36
26 13 0.52
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAATTTTGAAAAAGATCAATCAAA
Found at i:47366 original size:93 final size:94
Alignment explanation
Indices: 47206--47391 Score: 241
Period size: 93 Copynumber: 2.0 Consensus size: 94
47196 GAAACACAAT
* * * *
47206 ACCCCATTCCTAGATGGAATGGCCACCCACGTGGGTTTGATTTACCCACCAATTTTAGCACTAAA
1 ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCAATTTTAGCACTAAA
* * * *
47271 ATACTAAATAATTATTGTCATATTACTAC
66 ATACCAAACAATCATTATCATATTACTAC
* * * *
47300 ACCCCATACCTATATGAAATGG-CTCCCACGTGGGTTTAATTAACCCA-CATATTTTTGTACTAA
1 ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCA-ATTTTAGCACTAA
47363 AATACCAAACAATCATTATCATATTACTA
65 AATACCAAACAATCATTATCATATTACTA
47392 ACCTAATTAA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
92 2 0.03
93 58 0.73
94 19 0.24
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (94 bp):
ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCAATTTTAGCACTAAA
ATACCAAACAATCATTATCATATTACTAC
Found at i:48753 original size:37 final size:37
Alignment explanation
Indices: 48712--48786 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
48702 TCAGATCTTG
*
48712 GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATT
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATT
48749 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATT
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATT
48786 G
1 G
48787 CCCGGAGGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (37 bp):
GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATT
Found at i:48936 original size:79 final size:79
Alignment explanation
Indices: 48749--49019 Score: 474
Period size: 79 Copynumber: 3.5 Consensus size: 79
48739 GCTTAAGATT
*
48749 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
1 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
48814 -A-ACTTACTGATG
66 AAGACTTACTGATG
* * *
48826 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGCCAGAAGGACTTAATCCTCATGCTCGG
1 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
48891 AAGACTTACTGATG
66 AAGACTTACTGATG
*
48905 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
1 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
*
48970 AAGACTTACTGATT
66 AAGACTTACTGATG
48984 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGAT
1 GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGAT
49020 GGATTCGATT
Statistics
Matches: 182, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
77 61 0.34
78 1 0.01
79 120 0.66
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (79 bp):
GATTTGCTTCACTACTCTTCAGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
AAGACTTACTGATG
Found at i:49414 original size:43 final size:43
Alignment explanation
Indices: 49346--49443 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
49336 TTCGTCGTGA
* ** *
49346 AGTTGAAATCGTGGATGTATGGGTACGATATTCTCCGTCATGG
1 AGTTGAAATCGTAGATCCATGGGTACGATATCCTCCGTCATGG
* *
49389 AGTTGAAATCGTAGATCCATTGGTACGATATCCTCCGTCGTGG
1 AGTTGAAATCGTAGATCCATGGGTACGATATCCTCCGTCATGG
49432 AGTTGAAATCGT
1 AGTTGAAATCGT
49444 GGATGGCCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
AGTTGAAATCGTAGATCCATGGGTACGATATCCTCCGTCATGG
Found at i:49720 original size:43 final size:43
Alignment explanation
Indices: 49673--49783 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 43
49663 CGATTTTCTT
* * * **
49673 CGTCGTGAAGTTGAAACCGTAGATGTGTGGGCACGATATCCTC
1 CGTCGTGGAGTTGAAATCGTGGATGCATGGGCACGATATCCTC
* * *
49716 CGTCGTGGAGTTGAAATCGTGGATCCATTGGTACGATATCCTC
1 CGTCGTGGAGTTGAAATCGTGGATGCATGGGCACGATATCCTC
49759 CGTCGTGGAGTTGAAATCGTGGATG
1 CGTCGTGGAGTTGAAATCGTGGATG
49784 GCGCCTTCAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (43 bp):
CGTCGTGGAGTTGAAATCGTGGATGCATGGGCACGATATCCTC
Found at i:49804 original size:335 final size:334
Alignment explanation
Indices: 49082--49845 Score: 1217
Period size: 335 Copynumber: 2.3 Consensus size: 334
49072 CGTGAGTATA
* * *
49082 ATATCCTCTGTCGTGGAGTTGAAATCGTGGATGACCCATTCGTCGTAAAGTCGAGCCTTGACTTG
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTTGAGCCTTGACTTG
* *
49147 AATATCCTTTGTCGTGAAGTTGAAATCCAAGCTTATGATGTTTCGGGTCCAATATCCTTCGCCGT
66 AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTATGATGTTTCGAGTCCAATATCCTTCGCCGT
* * *
49212 AAAGTTGAAATTGACTCTGAAACTGGAAAATTTATTGACATACACTCCTTCTTCGAGTTGGATAT
131 AAAGTTAAAATTGACTCTAAAACTGGAAAATTTATTGACAGACACTCCTTCTTCGAGTTGGATAT
* * *
49277 CCTTCATCGTGAAGTTAAATCCAATCTAGAGATGGATGCTGCTTGTGTGTATGATTCCCTTCGTC
196 CCTTCATCGTGAAGTTAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTCCCTTCGTC
* * * *
49342 GTGAAGTTGAAATCGTGGATGTATGGGTACGATATTCTCCGTCATGGAGTTGAAATCGTAGATCC
261 GTGAAGTTGAAACCGTAGATGTATGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTAGATCC
49407 ATTGGTACG
326 ATTGGTACG
49416 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTTGAGCCTTGACTTG
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTTGAGCCTTGACTTG
* *
49481 AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTGTG-TCGTTTCGAGTCTAATATCCTTCGCCG
66 AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTATGAT-GTTTCGAGTCCAATATCCTTCGCCG
* * * *
49545 TGAAGTTAAAATTGGCTCTAAAACTGGAAAGTTTATTGACAGACACTCCTTCTTTGAGTTGGATA
130 TAAAGTTAAAATTGACTCTAAAACTGGAAAATTTATTGACAGACACTCCTTCTTCGAGTTGGATA
* **
49610 TCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTTTCTTCG
195 TCCTTCATCGTGAAGTT-AAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTCCCTTCG
* * *
49675 TCGTGAAGTTGAAACCGTAGATGTGTGGGCACGATATCCTCCGTCGTGGAGTTGAAATCGTGGAT
259 TCGTGAAGTTGAAACCGTAGATGTATGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTAGAT
49740 CCATTGGTACG
324 CCATTGGTACG
* *
49751 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCGCC-TTCATCGTGAAGTTGAGCCTTGACTT
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGC-CCATTCGTCGTAAAGTTGAGCCTTGACTT
*
49815 GAATATCCTTCATCGTGAAGTTGAAATCCAA
65 GAATATCCTTCGTCGTGAAGTTGAAATCCAA
49846 ATATTGCATG
Statistics
Matches: 397, Mismatches: 30, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
333 1 0.00
334 194 0.49
335 200 0.50
336 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (334 bp):
ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTTGAGCCTTGACTTG
AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTATGATGTTTCGAGTCCAATATCCTTCGCCGT
AAAGTTAAAATTGACTCTAAAACTGGAAAATTTATTGACAGACACTCCTTCTTCGAGTTGGATAT
CCTTCATCGTGAAGTTAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTCCCTTCGTC
GTGAAGTTGAAACCGTAGATGTATGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTAGATCC
ATTGGTACG
Found at i:50091 original size:81 final size:82
Alignment explanation
Indices: 49955--50114 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 82
49945 CGCCGTGAAG
* *
49955 TTGAAAAAGAGGGATCTGTTCCGCTTCTTCTGAGGGAATATCGGATCTAGGAGAGTTGATCAATT
1 TTGAAAAAGAGGGATCTGTTCCGCTTCTTCTGAGGGAATATCAGATCTAGGAGAGTTAATCAATT
50020 AAATCGTGGCAAGAATC
66 AAATCGTGGCAAGAATC
*
50037 TTGAAAAAGAGGGATCTGTT-CGCTTCTTCTGAGGGAATATCAGATCT-GGAAGAGTTAATCCAT
1 TTGAAAAAGAGGGATCTGTTCCGCTTCTTCTGAGGGAATATCAGATCTAGG-AGAGTTAATCAAT
* *
50100 TGAATCGTGGTAAGA
65 TAAATCGTGGCAAGA
50115 CTTGTTCCGC
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 2 0.03
81 50 0.69
82 20 0.28
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (82 bp):
TTGAAAAAGAGGGATCTGTTCCGCTTCTTCTGAGGGAATATCAGATCTAGGAGAGTTAATCAATT
AAATCGTGGCAAGAATC
Found at i:50245 original size:37 final size:37
Alignment explanation
Indices: 50195--50269 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
50185 TCAGATCTTG
* *
50195 GATTTCCTTCACTACTCTTTAGTGAAGGCTTAAGATT
1 GATTTCCTTCACTACTATTCAGTGAAGGCTTAAGATT
* *
50232 GATTTTCTTCACTACTATTCGGTGAAGGCTTAAGATT
1 GATTTCCTTCACTACTATTCAGTGAAGGCTTAAGATT
50269 G
1 G
50270 CCTGGAGGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (37 bp):
GATTTCCTTCACTACTATTCAGTGAAGGCTTAAGATT
Found at i:50363 original size:79 final size:79
Alignment explanation
Indices: 50232--50504 Score: 492
Period size: 79 Copynumber: 3.5 Consensus size: 79
50222 GCTTAAGATT
* * *
50232 GATTTTCTTCACTACTATTCGGTGAAGGCTTAAGATTGCCTGGAGGACTTAATCATCATGCTCGG
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
50297 AAGACTTACTGATG
66 AAGACTTACTGATG
50311 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
50376 AAGACTTACTGATG
66 AAGACTTACTGATG
* *
50390 GATTTACTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGATGACTTAATCATCATGCTCGG
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
*
50455 AAGACTTACTAATG
66 AAGACTTACTGATG
50469 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGAT
1 GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGAT
50505 GGATTCGATT
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 187 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (79 bp):
GATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGCCCGGAGGACTTAATCATCATGCTCGG
AAGACTTACTGATG
Found at i:50884 original size:43 final size:43
Alignment explanation
Indices: 50831--50933 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
50821 TTCATCGTGA
* ** *
50831 AGTTTAAATCGTGGATGTGTGGGCATGATATCCTCCGTCATGG
1 AGTTGAAATCGTGGATGCATGGGCACGATATCCTCCGTCATGG
* * * *
50874 AGTTGAAATCGTGGATCCATTGGTACGATATCCTCCGTCGTGG
1 AGTTGAAATCGTGGATGCATGGGCACGATATCCTCCGTCATGG
50917 AGTTGAAATCGTGGATG
1 AGTTGAAATCGTGGATG
50934 GCCCATTCGT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (43 bp):
AGTTGAAATCGTGGATGCATGGGCACGATATCCTCCGTCATGG
Found at i:51167 original size:335 final size:331
Alignment explanation
Indices: 50567--51327 Score: 1193
Period size: 335 Copynumber: 2.3 Consensus size: 331
50557 CGTGAGTATA
* *
50567 ATATCCTCTGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTCAAGCCTTGACTTG
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTCGAGCCTTGACTTG
* * *
50632 AATATCTTTCTTCGTGAAGTTGAAATCCAAGCTTATATGTTTCGGGTCCAATATCCTTCGCCGTG
66 AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTATATGTTTCGAGTCCAATATCCTTCGCCGTG
* * * *
50697 AAGTTGAAATTGACTCTGAAACTGGAAAATTTATTGACATACACTCCTTCTTCGAGTTGGATATC
131 AAGTTAAAATTGACTCTGAAACTGGAAAATTTATTGACAGACACTCATTCTTCAAGTTGGATATC
* * *
50762 CTTCTTCGTGAAGTTGAAATCCAATCTAGAGATGAATGCTGCTTGTGTGTACGATTTCCTTCATC
196 CTTCGTCGTGAAGTTAAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTTCCTTCATC
* * *
50827 GTGAAGTTTAAATCGTGGATGTGTGGGCATGATATCCTCCGTCATGGAGTTGAAATCGTGGATCC
261 GTGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTGGATCC
50892 ATTGGTACG
326 A-T--TACG
50901 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTCGAGCCTTGACTTG
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTCGAGCCTTGACTTG
* * * * *
50966 AATATCCTTCGTCATGAAGTTGAAATCTAAGCTTGTGTTGTTTTGAGTCCAATATCCTTCGCCGT
66 AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTAT-ATGTTTCGAGTCCAATATCCTTCGCCGT
* * *
51031 GAAGTTAAAATTGGCTCTGAAACTGGAAAGTTTATTGACAGACACTCATTCTTTAAGTTGGATAT
130 GAAGTTAAAATTGACTCTGAAACTGGAAAATTTATTGACAGACACTCATTCTTCAAGTTGGATAT
*
51096 CCTTCGTCGTGAAGTTAAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTTCCTTTGA
195 CCTTCGTCGTGAAGTTAAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTTCC-TTCA
* *
51161 -CGTGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTTCGTCGTGGAGTTGAAATCGTGGAT
259 TCGTGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTGGAT
51225 CCATTACG
324 CCATTACG
* * *
51233 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCGCC-TTCGTCGTGAAGTTGAGTCTTGACTT
1 ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGC-CCATTCGTCGTAAAGTCGAGCCTTGACTT
51297 GAATATCCTTCGTCGTGAAGTTGAAATCCAA
65 GAATATCCTTCGTCGTGAAGTTGAAATCCAA
51328 ATATTTTATG
Statistics
Matches: 393, Mismatches: 31, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
332 91 0.23
333 2 0.01
334 95 0.24
335 202 0.51
336 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (331 bp):
ATATCCTCCGTCGTGGAGTTGAAATCGTGGATGGCCCATTCGTCGTAAAGTCGAGCCTTGACTTG
AATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTATATGTTTCGAGTCCAATATCCTTCGCCGTG
AAGTTAAAATTGACTCTGAAACTGGAAAATTTATTGACAGACACTCATTCTTCAAGTTGGATATC
CTTCGTCGTGAAGTTAAAATCCAATCTAGAGATGAATGATGCTTGTGTGTACGATTTCCTTCATC
GTGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCATGGAGTTGAAATCGTGGATCC
ATTACG
Found at i:51545 original size:63 final size:64
Alignment explanation
Indices: 51469--51599 Score: 192
Period size: 63 Copynumber: 2.1 Consensus size: 64
51459 TTGTGTTATT
* **
51469 TTGAGTTCAATATCCTTCACTGTGAAGTTGAAATTGACTCGGAATAAAACTG-AATTTTTTTTG
1 TTGAGTACAATATCCTTCACTGTGAAGTTGAAATTGACTCGGAATAAAACTGAAAAGTTTTTTG
* * * *
51532 TTGAGTACAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAATTGAAAAGTTTTTTG
1 TTGAGTACAATATCCTTCACTGTGAAGTTGAAATTGACTCGGAATAAAACTGAAAAGTTTTTTG
51596 TTGA
1 TTGA
51600 CAGACGCTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
63 47 0.78
64 13 0.22
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (64 bp):
TTGAGTACAATATCCTTCACTGTGAAGTTGAAATTGACTCGGAATAAAACTGAAAAGTTTTTTG
Found at i:52743 original size:11 final size:11
Alignment explanation
Indices: 52721--52774 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
52711 GATTATCGTC
52721 CTTTTTTT--T
1 CTTTTTTTGCT
52730 CTTTTTTTGCT
1 CTTTTTTTGCT
*
52741 C-TTTGTTGCT
1 CTTTTTTTGCT
*
52751 CTTTTTTTTCT
1 CTTTTTTTGCT
*
52762 CTTTTTTTTCT
1 CTTTTTTTGCT
52773 CT
1 CT
52775 GTTTCTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
9 8 0.21
10 9 0.23
11 22 0.56
ACGTcount: A:0.00, C:0.19, G:0.06, T:0.76
Consensus pattern (11 bp):
CTTTTTTTGCT
Found at i:52757 original size:30 final size:27
Alignment explanation
Indices: 52721--52793 Score: 83
Period size: 30 Copynumber: 2.6 Consensus size: 27
52711 GATTATCGTC
*
52721 CTTTTTTTTCTTTTTTTGCTCTTTGTTGCT
1 CTTTTTTTTCTTTTTTT-CTCTCTGTT--T
*
52751 CTTTTTTTTCTCTTTTTTTTCTCTGTTT
1 CTTTTTTTTCT-TTTTTTCTCTCTGTTT
*
52779 CTTTTTTTCCTTTTT
1 CTTTTTTTTCTTTTT
52794 CCTTTTCTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.10
28 11 0.28
30 18 0.46
31 6 0.15
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (27 bp):
CTTTTTTTTCTTTTTTTCTCTCTGTTT
Found at i:52990 original size:2 final size:2
Alignment explanation
Indices: 52983--53058 Score: 115
Period size: 2 Copynumber: 40.0 Consensus size: 2
52973 GACAACAGGG
*
52983 AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT -T AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53023 AT AT AT AT AT AT -T AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53059 TGGGGGGTGA
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
1 4 0.06
2 64 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:53007 original size:17 final size:17
Alignment explanation
Indices: 52985--53058 Score: 109
Period size: 17 Copynumber: 4.5 Consensus size: 17
52975 CAACAGGGAT
52985 ATATATATATATATATA
1 ATATATATATATATATA
53002 ATATATATATATATATTA
1 ATATATATATATATA-TA
*
53020 A-ATATATATATATATT
1 ATATATATATATATATA
53036 ATATATATA-ATATAT-
1 ATATATATATATATATA
53051 ATATATAT
1 ATATATAT
53059 TGGGGGGTGA
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
15 8 0.15
16 8 0.15
17 35 0.65
18 3 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATATATATATATA
Found at i:55566 original size:16 final size:18
Alignment explanation
Indices: 55545--55579 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
55535 ATCTTGGACA
55545 TCTTATCT-TTTA-ACTC
1 TCTTATCTCTTTATACTC
55561 TCTTATCTCTTTATACTC
1 TCTTATCTCTTTATACTC
55579 T
1 T
55580 TCGTCAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (18 bp):
TCTTATCTCTTTATACTC
Found at i:56304 original size:55 final size:55
Alignment explanation
Indices: 56241--56382 Score: 196
Period size: 55 Copynumber: 2.6 Consensus size: 55
56231 CAAATTCAAA
* * *
56241 CTTCATTCATCGGATG-CCTTTCTTCATGGATCGATCTTCAATCAGTTTCAGATTT
1 CTTCATTCATCGGATGTCC-TTCTTCATGAATCGATCTTCAATCAGGTTCAAATTT
* * *
56296 CTTCATTCATCAGATGTCCATCTTCATGAATCGTTCTTCAATCAGGTTCAAATTT
1 CTTCATTCATCGGATGTCCTTCTTCATGAATCGATCTTCAATCAGGTTCAAATTT
* *
56351 CTTCATTCATTGGACGTCCTTCTTCATGAATC
1 CTTCATTCATCGGATGTCCTTCTTCATGAATC
56383 ACTTGAATGT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
55 74 0.97
56 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (55 bp):
CTTCATTCATCGGATGTCCTTCTTCATGAATCGATCTTCAATCAGGTTCAAATTT
Found at i:59255 original size:93 final size:94
Alignment explanation
Indices: 59095--59280 Score: 259
Period size: 93 Copynumber: 2.0 Consensus size: 94
59085 GAAACACAAT
* * *
59095 ACCCCATACCTAGATGGAATGGCCACCCACGTGGGTTTGATTTACCCACCAATTTTAGCACTAAA
1 ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCAATTTTAGCACTAAA
* * * *
59160 ATACTAAATAATTATTGTCATATTACTAC
66 ATACCAAACAATCATTATCATATTACTAC
* * *
59189 ACCCCATACCTAGATGAAATGG-CTCCCACGTGGGTTTAATTAACCCA-CATATTTTTGTACTAA
1 ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCA-ATTTTAGCACTAA
59252 AATACCAAACAATCATTATCATATTACTA
65 AATACCAAACAATCATTATCATATTACTA
59281 ACCTAATTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.02
93 58 0.72
94 21 0.26
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.30
Consensus pattern (94 bp):
ACCCCATACCTAGATGAAATGGCCACCCACGTGGGTTTAATTAACCCACCAATTTTAGCACTAAA
ATACCAAACAATCATTATCATATTACTAC
Found at i:60478 original size:15 final size:17
Alignment explanation
Indices: 60454--60490 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
60444 AATGTCTTTT
60454 AAAATAA-TTTTAAGA-
1 AAAATAATTTTTAAGAC
*
60469 AAAATCATTTTTAAGAC
1 AAAATAATTTTTAAGAC
60486 AAAAT
1 AAAAT
60491 TGGTCTGCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 8 0.42
17 5 0.26
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (17 bp):
AAAATAATTTTTAAGAC
Found at i:63832 original size:15 final size:15
Alignment explanation
Indices: 63801--63849 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
63791 ATATAGATTA
63801 AAATTAAAAGG-TAAG
1 AAATTAAAAGGCT-AG
63816 AAATTAAAAGGCTAG
1 AAATTAAAAGGCTAG
63831 AACATTTAAAAGGCTAG
1 AA-A-TTAAAAGGCTAG
63848 AA
1 AA
63850 CATCAAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.48
16 2 0.06
17 14 0.45
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.20
Consensus pattern (15 bp):
AAATTAAAAGGCTAG
Found at i:63841 original size:17 final size:17
Alignment explanation
Indices: 63819--63852 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63809 AGGTAAGAAA
63819 TTAAAAGGCTAGAACAT
1 TTAAAAGGCTAGAACAT
63836 TTAAAAGGCTAGAACAT
1 TTAAAAGGCTAGAACAT
63853 CAAATACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
TTAAAAGGCTAGAACAT
Found at i:65402 original size:39 final size:39
Alignment explanation
Indices: 65359--65516 Score: 118
Period size: 39 Copynumber: 3.7 Consensus size: 39
65349 TTGATCCAAG
65359 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC
** * **
65398 GTTGAATGAGTTCTTCTCATTATGAACTCTCCACTGGAAATCTTGAACCAAG
1 GTTGAACAAGTTCTTCTCATTATGAACT-T---CT-----TC-T--CCC-TC
65450 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC
* ***
65489 GTTGGATGTGTTCTTCTCATTATGAACT
1 GTTGAACAAGTTCTTCTCATTATGAACT
65517 CTCCACTGGA
Statistics
Matches: 92, Mismatches: 14, Indels: 26
0.70 0.11 0.20
Matches are distributed among these distances:
39 50 0.54
40 3 0.03
42 1 0.01
43 4 0.04
48 4 0.04
49 1 0.01
51 3 0.03
52 26 0.28
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (39 bp):
GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC
Found at i:65502 original size:91 final size:91
Alignment explanation
Indices: 65340--66345 Score: 1653
Period size: 91 Copynumber: 11.1 Consensus size: 91
65330 ATGGGCTCTT
* * *
65340 CTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGAAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
65405 GAGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
65431 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
*
65496 GTGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
* * * *
65522 CTGGAAAT-TCTCAGCTAAGGTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCCTCGTTGGA
1 CTGGAAATCT-TGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGA
* *
65586 CGAGTTCTTCTCATTATGAACTCTTCA
65 TGAGTTCTTCTCATTATGAACTCTCCA
*
65613 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
65678 GAGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
* * *
65704 TTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTAATTATGAACTTCTTCTCCCTCGGTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
* *
65769 GAGTTCTTATCATTATGAACTTTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
*
65795 CTGGAAATCTTGAACCAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
65860 GAGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
* * *
65886 CTGGAAATGTTGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAA---CTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
65948 GAGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
* *
65974 CTGGAAATCTTAAACCAAGGTTGAACAAGTTTTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
** *
66039 TTGTTCTTCTCATTATGAACTCTCTA
66 GAGTTCTTCTCATTATGAACTCTCCA
* * * *
66065 CTGGAAAT-TCTCAGCTAAGGTTGAACAAGTTCTTCTCATTATAAACTTCTTCTCCCTCGTTGGA
1 CTGGAAATCT-TGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGA
66129 TGAGTTCTTCTCATTATGAACTCTCCA
65 TGAGTTCTTCTCATTATGAACTCTCCA
66156 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
*
66221 GAGTTCTTCTTATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
* * *
66247 CTGGAAATCTTAAACCAAGGTTGAACAAGCTCTTCTCATAATGAACTTCTTCTCCCTCGTTGGAT
1 CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
66312 GAGTTCTTCTCATTATGAACTCTCCA
66 GAGTTCTTCTCATTATGAACTCTCCA
*
66338 TTGGAAAT
1 CTGGAAAT
66346 GTCAATTGGT
Statistics
Matches: 848, Mismatches: 60, Indels: 14
0.92 0.07 0.02
Matches are distributed among these distances:
88 83 0.10
90 2 0.00
91 761 0.90
92 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (91 bp):
CTGGAAATCTTGAACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGAT
GAGTTCTTCTCATTATGAACTCTCCA
Found at i:66576 original size:13 final size:13
Alignment explanation
Indices: 66558--66587 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
66548 TAACTTTGGA
66558 ATTCCTGTCAAAT
1 ATTCCTGTCAAAT
66571 ATTCCTGTCAAAT
1 ATTCCTGTCAAAT
66584 ATTC
1 ATTC
66588 AACACCTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (13 bp):
ATTCCTGTCAAAT
Found at i:66773 original size:75 final size:75
Alignment explanation
Indices: 66634--66910 Score: 315
Period size: 75 Copynumber: 3.7 Consensus size: 75
66624 AGAGAAGCTC
* * * * *
66634 TCTCGAGTGAGATACAATTTCTTATTTCGAGGGAAAACTATCTCAAGCGAGACGAAGTTGGTTTT
1 TCTCAAGTAAGATAAAATTTCTTGTTTC-AAGGAAAACTATCTCAAGCGAGACGAAGTTGGTTTT
*
66699 AAGAGAAACCA
65 AAGAAAAACCA
* * *
66710 TCTCAAGTAAGATAAAATTTCTTGTTTCAAGGCAAATTGTCTCAAGCGAGACGAAGTTGGTTTTA
1 TCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGCGAGACGAAGTTGGTTTTA
*
66775 AGAAAAACAA
66 AGAAAAACCA
* * * * * * *** *
66785 TCTCGAGTGAGATAAAATTTCTTATTTTAAAGG-AAACTGTCTCCAA-TGAGACGAAACCGATTT
1 TCTCAAGTAAGATAAAATTTCTT-GTTTCAAGGAAAACTATCT-CAAGCGAGACGAAGTTGGTTT
*
66848 TAAGAAAAACTA
64 TAAGAAAAACCA
*
66860 TCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGAGAGA
1 TCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGCGAGA
66911 GAAAAATCGT
Statistics
Matches: 170, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
74 10 0.06
75 126 0.74
76 34 0.20
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (75 bp):
TCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGCGAGACGAAGTTGGTTTTA
AGAAAAACCA
Found at i:66872 original size:150 final size:151
Alignment explanation
Indices: 66634--66910 Score: 387
Period size: 150 Copynumber: 1.8 Consensus size: 151
66624 AGAGAAGCTC
* * * *** *
66634 TCTCGAGTGAGATACAATTTCTTATTTCGAGGGAAAACTATCTCAAGCGAGACGAAGTTGGTTTT
1 TCTCGAGTGAGATAAAATTTCTTATTTCAAAGGAAAACTATCTCAAGCGAGACGAAACCGATTTT
* * * * *
66699 AAGAGAAACCATCTCAAGTAAGATAAAATTTCTTGTTTCAAGGCAAATTGTCTCAAGCGAGACGA
66 AAGAAAAACCATCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGAGAGACGA
66764 AGTTGGTTTTAAGAAAAACAA
131 AGTTGGTTTTAAGAAAAACAA
* * *
66785 TCTCGAGTGAGATAAAATTTCTTATTTTAAAGG-AAACTGTCTCCAA-TGAGACGAAACCGATTT
1 TCTCGAGTGAGATAAAATTTCTTATTTCAAAGGAAAACTATCT-CAAGCGAGACGAAACCGATTT
*
66848 TAAGAAAAACTATCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGAGAGA
65 TAAGAAAAACCATCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGAGAGA
66911 GAAAAATCGT
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
150 77 0.71
151 32 0.29
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (151 bp):
TCTCGAGTGAGATAAAATTTCTTATTTCAAAGGAAAACTATCTCAAGCGAGACGAAACCGATTTT
AAGAAAAACCATCTCAAGTAAGATAAAATTTCTTGTTTCAAGGAAAACTATCTCAAGAGAGACGA
AGTTGGTTTTAAGAAAAACAA
Found at i:66994 original size:36 final size:35
Alignment explanation
Indices: 66947--67107 Score: 140
Period size: 36 Copynumber: 4.7 Consensus size: 35
66937 CAACGATTGG
* *
66947 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGAC-AAACT
**
66983 TGTTTCAAGGGAAACATAT-TC-A-A-AG---ATTT
1 TGTTTCAAGGGAAAC-TATCTCAAGAGAGACAAACT
* *
67012 TGTTTCAAGGGGAAACTGTCTTAAGAGAGACAAACTT
1 TGTTTCAA-GGGAAACTATCTCAAGAGAGACAAAC-T
* *
67049 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAATTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAA-CT
67085 TGTTTCAAGGGAAACATAT-TCAA
1 TGTTTCAAGGGAAAC-TATCTCAA
67108 CGATTTTGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 24
0.74 0.09 0.18
Matches are distributed among these distances:
29 11 0.11
30 8 0.08
31 1 0.01
32 1 0.01
33 4 0.04
34 1 0.01
35 1 0.01
36 60 0.59
37 14 0.14
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (35 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAACT
Found at i:67016 original size:29 final size:31
Alignment explanation
Indices: 66983--67127 Score: 102
Period size: 36 Copynumber: 4.5 Consensus size: 31
66973 AGACAAAACA
66983 TGTTTCAAGGGAAACATATTCAA-AG-ATTT
1 TGTTTCAAGGGAAACATATTCAAGAGAATTT
* * * *
67012 TGTTTCAAGGGGAAACTGTCTTAAGAGAGACAAACTT
1 TGTTTCAA-GGGAAAC-ATATTCA-AGAG---AATTT
67049 TGTTTCAAGGGAAAC-TATCTCAAGGGAGACAAATTT
1 TGTTTCAAGGGAAACATAT-TCAA--GAG---AATTT
*
67085 TGTTTCAAGGGAAACATATTCAA-CG-ATTT
1 TGTTTCAAGGGAAACATATTCAAGAGAATTT
67114 TGTTTCAAGGGAAA
1 TGTTTCAAGGGAAA
67128 TTGTCTCAAG
Statistics
Matches: 96, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
29 26 0.27
30 7 0.07
31 4 0.04
32 1 0.01
33 3 0.03
34 3 0.03
35 2 0.02
36 36 0.38
37 14 0.15
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (31 bp):
TGTTTCAAGGGAAACATATTCAAGAGAATTT
Found at i:67038 original size:66 final size:66
Alignment explanation
Indices: 66881--67071 Score: 214
Period size: 66 Copynumber: 2.9 Consensus size: 66
66871 ATAAAATTTC
* * * * * *
66881 TTGTTTCAAGGAAAACTATCTCAAGAGAGAGAAAA-ATCGTTT-AAGGGATACGAT-CTCAACGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACAT-GTTTCAAGGGAAAC-ATATTCAAAGA
66943 TTG
64 TTG
*
66946 GTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATT
67011 -
66 G
* *
67011 TTGTTTCAAGGGGAAACTGTCTTAAGAGAGAC-AAACTTTGTTTCAAGGGAAAC-TATCTCAA
1 TTGTTTCAA-GGGAAACTGTCTCAAGAGAGACAAAAC-ATGTTTCAAGGGAAACATAT-TCAA
67072 GGGAGACAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
65 52 0.47
66 58 0.53
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (66 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATT
G
Found at i:67061 original size:102 final size:101
Alignment explanation
Indices: 66947--67262 Score: 321
Period size: 102 Copynumber: 3.1 Consensus size: 101
66937 CAACGATTGG
*
66947 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATTT
*
67012 TGTTTCAAGGGGAAACTGTCTTAAGAGAGACAAACTT
66 TGTTTCAA-GGGAAACTGTCTCAAGAGAGACAAACTT
* *** *
67049 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAATTTTGTTTCAAGGGAAACATATTCAACGATTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATTT
* * *
67114 TGTTTCAAGGGAAATTGTCTCAAGAGAAATAAAACTCT
66 TGTTTCAAGGGAAACTGTCTCAAGAGAGA-CAAACT-T
* ** * * * * ** * * *
67152 TTTTTTTA-GAAAAATAATCTCAAGTGAGA-TAAATTTTTTTGCAAGGGAAACCTGTTCAAAGAT
1 TGTTTCAAGGGAAACT-ATCTCAAGAGAGACAAAACATGTTT-CAAGGGAAACATATTCAAAGA-
** * *
67215 TTTGTGTTTCAAGATAAACTGTCTCAAGGGAGACAAAATT
63 TTT-TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAACTT
67255 TGTTTCAA
1 TGTTTCAA
67263 AATAACAGAC
Statistics
Matches: 176, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
101 18 0.10
102 85 0.48
103 42 0.24
104 7 0.04
105 24 0.14
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (101 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACATGTTTCAAGGGAAACATATTCAAAGATTT
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAACTT
Found at i:67637 original size:42 final size:42
Alignment explanation
Indices: 67551--67664 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 42
67541 GCCTGAAGGT
* *
67551 CTTATGGATGGCCCGAAGGACTTA-TCATCTTGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
* *
67592 CTTATAGATGGCCCGAAGGATTTACGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
* *
67634 CTTATTGATGGCCTGAAGGACTTACTCATCA
1 CTTATAGATGGCCCGAAGGACTTACTCATCA
67665 AGAAACCCTT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 22 0.34
42 42 0.66
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (42 bp):
CTTATAGATGGCCCGAAGGACTTACTCATCATGCTCGAAAGA
Found at i:67852 original size:20 final size:20
Alignment explanation
Indices: 67829--67895 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
67819 GCCCGAGGGT
*
67829 CTTATGGATGGCCCAAATGA
1 CTTATGGATGGCCCGAATGA
* * *
67849 CTTAT-CATCTTGCCCGAATGT
1 CTTATGGA--TGGCCCGAATGA
*
67870 CTTATGGATGGCCCGAAGGA
1 CTTATGGATGGCCCGAATGA
67890 CTTATG
1 CTTATG
67896 CATCACGCTC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 1 0.03
20 20 0.56
21 14 0.39
22 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (20 bp):
CTTATGGATGGCCCGAATGA
Found at i:67872 original size:41 final size:42
Alignment explanation
Indices: 67813--67935 Score: 131
Period size: 41 Copynumber: 3.0 Consensus size: 42
67803 CATTTGAAAA
* *
67813 CATCTTGCCCGAGGGTCTTATGGATGGCCCAAATGACTTAT-
1 CATCTTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTATG
* *
67854 CATCTTGCCCGAATGTCTTATGGATGGCCCGAAGGACTTATG
1 CATCTTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTATG
** * * * * * *
67896 CATCACGCTCAAAAGACTTATTGATGGCCCGAAGGACTTA
1 CATCTTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTA
67936 CTCATCAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
41 37 0.53
42 33 0.47
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (42 bp):
CATCTTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTATG
Found at i:67935 original size:20 final size:20
Alignment explanation
Indices: 67860--67935 Score: 55
Period size: 20 Copynumber: 3.7 Consensus size: 20
67850 TTATCATCTT
* * *
67860 GCCCGAATGTCTTATGGATG
1 GCCCGAAGGACTTATTGATG
*
67880 GCCCGAAGGACTTA-TGCATCAC
1 GCCCGAAGGACTTATTG-AT--G
* * *
67902 GCTCAAAAGACTTATTGATG
1 GCCCGAAGGACTTATTGATG
67922 GCCCGAAGGACTTA
1 GCCCGAAGGACTTA
67936 CTCATCAAGA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
19 1 0.02
20 25 0.61
22 13 0.32
23 2 0.05
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (20 bp):
GCCCGAAGGACTTATTGATG
Found at i:68125 original size:38 final size:38
Alignment explanation
Indices: 68073--68151 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 38
68063 TAGTTTCTTA
* * * *
68073 AAATCTTTTGTTTCGAGCGAAACTATCTCAAACGAGAT
1 AAATCTTCTATTTCGAGCAAAACTATATCAAACGAGAT
*
68111 AAATCTTCTATTTCGAGTAAAACTATATCAAACGAGAT
1 AAATCTTCTATTTCGAGCAAAACTATATCAAACGAGAT
68149 AAA
1 AAA
68152 ATCTATTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (38 bp):
AAATCTTCTATTTCGAGCAAAACTATATCAAACGAGAT
Found at i:68169 original size:36 final size:37
Alignment explanation
Indices: 68092--68169 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 37
68082 GTTTCGAGCG
* * * *
68092 AAACTATCTCAAACGAGATAAATCTTCTATTTCGAGTA
1 AAACTATATCAAACGAGATAAA-CATCTATTTCAAGAA
*
68130 AAACTATATCAAACGAGATAAA-ATCTATTTTAAGAA
1 AAACTATATCAAACGAGATAAACATCTATTTCAAGAA
68166 AAAC
1 AAAC
68170 AATCTTGAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 14 0.40
38 21 0.60
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.28
Consensus pattern (37 bp):
AAACTATATCAAACGAGATAAACATCTATTTCAAGAA
Found at i:71931 original size:19 final size:18
Alignment explanation
Indices: 71907--71949 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
71897 TTGGAACACC
71907 ATAAAACATGGTGATTTTA
1 ATAAAACAT-GTGATTTTA
* *
71926 ATAAAACATTTTATTTTA
1 ATAAAACATGTGATTTTA
71944 ATAAAA
1 ATAAAA
71950 TACCGAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.40
Consensus pattern (18 bp):
ATAAAACATGTGATTTTA
Found at i:72475 original size:22 final size:22
Alignment explanation
Indices: 72447--72501 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
72437 CAAATTATGA
72447 AAGAACCTAGGGGCTCAAACCT
1 AAGAACCTAGGGGCTCAAACCT
*
72469 ATGAACCTAGGGGCTCAAACCT
1 AAGAACCTAGGGGCTCAAACCT
*
72491 AAGAACGTAGG
1 AAGAACCTAGG
72502 CTCTAATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.25, T:0.15
Consensus pattern (22 bp):
AAGAACCTAGGGGCTCAAACCT
Found at i:76214 original size:3 final size:3
Alignment explanation
Indices: 76206--76284 Score: 133
Period size: 3 Copynumber: 26.7 Consensus size: 3
76196 TGAGACTATA
* *
76206 TAT TAT TAT TA- TAT TAC AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76253 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
76285 CAAAATAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
2 2 0.03
3 69 0.97
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:78671 original size:46 final size:48
Alignment explanation
Indices: 78581--78677 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 48
78571 TTAATATTGC
* *
78581 TTTATTTTCCTAATAAATGCATGCGAACTAGAAATCATGCGGTTA-GA
1 TTTATTTTCCAAATAAATGCATGCGAACTAGAAATCATGAGGTTAGGA
*
78628 TTTATTTCTCCAAATAAA-GCATG-GAACTAG-ATTGCATGAGGTTAGGA
1 TTTATTT-TCCAAATAAATGCATGCGAACTAGAAAT-CATGAGGTTAGGA
78675 TTT
1 TTT
78678 TTATGATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.05
46 16 0.36
47 17 0.39
48 9 0.20
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (48 bp):
TTTATTTTCCAAATAAATGCATGCGAACTAGAAATCATGAGGTTAGGA
Found at i:78935 original size:7 final size:7
Alignment explanation
Indices: 78905--78934 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
78895 CCAATATCAA
78905 CACCTTG
1 CACCTTG
78912 CACCTTG
1 CACCTTG
78919 CACCTTG
1 CACCTTG
*
78926 CATCTTG
1 CACCTTG
78933 CA
1 CA
78935 TATGCATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.40, G:0.13, T:0.30
Consensus pattern (7 bp):
CACCTTG
Found at i:83526 original size:62 final size:62
Alignment explanation
Indices: 83424--84537 Score: 1304
Period size: 62 Copynumber: 17.9 Consensus size: 62
83414 TGTCCTATAA
* * * * * *
83424 TCAATCATTGACTTCCTCATGAAGAGAAGTCAGCCTTTGTTATTTATGACTCCCCATTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * ** *
83486 TCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCTTGTTATTTCTGACTCCCCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * *
83548 TCAATCCTTGATTTCCTCGTGAAGAGAAGTCAACATTTATTATTTGTGACTCCCTAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * * *
83610 TTAATCTTTGACTTCATCGTGAAGAGAAGTCAACCTTTATTATTTTTGAATCCTCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * *
83672 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTTTGACTCCTCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * **
83734 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTTACTCCTTAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * *
83796 TCAATCATTGACTTCCTTGTGAAGATAAGTCAACATTTGTTATTTTTGACTCCTCGGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * * **
83858 TCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTTTTATTCCTGACTCCCCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * * ** *
83920 TCAGAT-TTTGACTTCCTCGTGAAGATATGTCAACTTTTTAGGAAACTTAATCTTGTGT-CCTA-
1 TCA-ATCTTTGACTTCCTCGTGAAGAGAAGTCAAC-ATTT--G----TTATTTTTGACTCCCCAG
83982 TA-A-
58 TAGAG
* * * * *
83985 TCAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTGTTATTTATGACTCCCCATTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * ** *
84047 TCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCTTGTTATTTCTGACTCCCCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * * *
84109 TCAATCCTTGATTTCCTCGTGAAGAAAAGTCAACATTTATTATTTGTGACTCCCTAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * *
84171 TTAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTTTGAATCCTCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * *
84233 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTTTGACTCCTCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* **
84295 TCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCTTAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
*
84357 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCTCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * * **
84419 TCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTGTTATTCCTGACTCCCCAGTAGAG
1 TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
* * * *
84481 TCAGAT-TTTGACTTCCTCGTGAAGATAAGTCAACTTTTATTATTTCTGACTCCCCAG
1 TCA-ATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAG
84538 AAGAACTAAT
Statistics
Matches: 917, Mismatches: 121, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
58 7 0.01
59 3 0.00
60 2 0.00
61 1 0.00
62 851 0.93
63 7 0.01
64 5 0.01
65 27 0.03
66 1 0.00
67 2 0.00
68 3 0.00
69 8 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (62 bp):
TCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTCCCCAGTAGAG
Found at i:84455 original size:561 final size:561
Alignment explanation
Indices: 83393--84518 Score: 2162
Period size: 561 Copynumber: 2.0 Consensus size: 561
83383 TGAGAACATG
*
83393 TTTTTAGGAAACTTAATCTTGTGTCCTATAATCAATCATTGACTTCCTCATGAAGAGAAGTCAGC
1 TTTTTAGGAAACTTAATCTTGTGTCCTATAATCAATCATTGACTTCCTCATGAAGAGAAGTCAAC
83458 CTTTGTTATTTATGACTCCCCATTAGAGTCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCT
66 CTTTGTTATTTATGACTCCCCATTAGAGTCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCT
*
83523 TGTTATTTCTGACTCCCCAGTAGAGTCAATCCTTGATTTCCTCGTGAAGAGAAGTCAACATTTAT
131 TGTTATTTCTGACTCCCCAGTAGAGTCAATCCTTGATTTCCTCGTGAAGAAAAGTCAACATTTAT
83588 TATTTGTGACTCCCTAGTAGAGTTAATCTTTGACTTCATCGTGAAGAGAAGTCAACCTTTATTAT
196 TATTTGTGACTCCCTAGTAGAGTTAATCTTTGACTTCATCGTGAAGAGAAGTCAACCTTTATTAT
83653 TTTTGAATCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTT
261 TTTTGAATCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTT
*
83718 TGACTCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTTA
326 TGACTCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGA
* *
83783 CTCCTTAGTAGAGTCAATCATTGACTTCCTTGTGAAGATAAGTCAACATTTGTTATTTTTGACTC
391 CTCCTTAGTAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTC
* *
83848 CTCGGTAGAGTCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTTTTATTCCTGACTCCCC
456 CTCAGTAGAGTCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTGTTATTCCTGACTCCCC
*
83913 AGTAGAGTCAGATTTTGACTTCCTCGTGAAGATATGTCAAC
521 AGTAGAGTCAGATTTTGACTTCCTCGTGAAGATAAGTCAAC
83954 TTTTTAGGAAACTTAATCTTGTGTCCTATAATCAATCATTGACTTCCTCATGAAGAGAAGTCAAC
1 TTTTTAGGAAACTTAATCTTGTGTCCTATAATCAATCATTGACTTCCTCATGAAGAGAAGTCAAC
84019 CTTTGTTATTTATGACTCCCCATTAGAGTCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCT
66 CTTTGTTATTTATGACTCCCCATTAGAGTCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCT
84084 TGTTATTTCTGACTCCCCAGTAGAGTCAATCCTTGATTTCCTCGTGAAGAAAAGTCAACATTTAT
131 TGTTATTTCTGACTCCCCAGTAGAGTCAATCCTTGATTTCCTCGTGAAGAAAAGTCAACATTTAT
*
84149 TATTTGTGACTCCCTAGTAGAGTTAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTAT
196 TATTTGTGACTCCCTAGTAGAGTTAATCTTTGACTTCATCGTGAAGAGAAGTCAACCTTTATTAT
84214 TTTTGAATCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTT
261 TTTTGAATCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTT
84279 TGACTCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGA
326 TGACTCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGA
*
84344 CTCCTTAGTAGAGTCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTC
391 CTCCTTAGTAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTC
84409 CTCAGTAGAGTCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTGTTATTCCTGACTCCCC
456 CTCAGTAGAGTCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTGTTATTCCTGACTCCCC
84474 AGTAGAGTCAGATTTTGACTTCCTCGTGAAGATAAGTCAAC
521 AGTAGAGTCAGATTTTGACTTCCTCGTGAAGATAAGTCAAC
84515 TTTT
1 TTTT
84519 ATTATTTCTG
Statistics
Matches: 555, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
561 555 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (561 bp):
TTTTTAGGAAACTTAATCTTGTGTCCTATAATCAATCATTGACTTCCTCATGAAGAGAAGTCAAC
CTTTGTTATTTATGACTCCCCATTAGAGTCACTCATTGACTTCCTCGTGAAGAGAAGTCAACCCT
TGTTATTTCTGACTCCCCAGTAGAGTCAATCCTTGATTTCCTCGTGAAGAAAAGTCAACATTTAT
TATTTGTGACTCCCTAGTAGAGTTAATCTTTGACTTCATCGTGAAGAGAAGTCAACCTTTATTAT
TTTTGAATCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACTTTTATTATTTT
TGACTCCTCAGTAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGA
CTCCTTAGTAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGACTC
CTCAGTAGAGTCAATCTTTGACTCCCTCGTAAAAAGAATTCAACATTTGTTATTCCTGACTCCCC
AGTAGAGTCAGATTTTGACTTCCTCGTGAAGATAAGTCAAC
Found at i:84763 original size:36 final size:35
Alignment explanation
Indices: 84716--85177 Score: 647
Period size: 36 Copynumber: 12.9 Consensus size: 35
84706 TATTTCAAAT
* *
84716 TTAGCCTCCACGGAAGAGTAGTAAAGCAAAGCAATG
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGC-ATC
*
84752 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAATA
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGC-ATC
84788 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGTCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
* *
84824 TTAGCCTCCACAGAATAAG-AGTGAAGCAAAGTCATC
1 TTAGCCTCCACGGAA-GAGTAGTGAAGCAAAG-CATC
84860 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
84896 TTAGCCTCCACGGAAGAGTAGTGAAACAAAGCCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
** *
84932 TTAGCCTCCACATAAGAGTAGTGAAGCAAAGATATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
84968 TTAGCCTTCACGGAAGAGTAGTGAAGCAAAGACATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
85004 TTAGCCTCCACGGAAGAGTAGTGAAACAAAGTCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
85040 TTAGCCTCCATGGAAGAGTAGTGAAGCAAAGTCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
85076 TTAGCCTTCACGGAAGAGTAGTGAAGCAAAGCCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
*
85112 TTAGCCTCCACAGAAGAGTAGTGAAGCAAAGCCATC
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAAG-CATC
* * *
85148 ATAGCCTTCATGGAAGAGTAGTGAAGCAAA
1 TTAGCCTCCACGGAAGAGTAGTGAAGCAAA
85178 ACCAAATCAT
Statistics
Matches: 391, Mismatches: 32, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
35 2 0.01
36 386 0.99
37 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (35 bp):
TTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCATC
Found at i:85360 original size:3 final size:3
Alignment explanation
Indices: 85352--85425 Score: 107
Period size: 3 Copynumber: 25.3 Consensus size: 3
85342 ACTATATATA
** *
85352 ATT ATT ATT -TT ACA ATT ATT ATT ATC A-T ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
85398 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
85426 CAAAATAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
2 3 0.05
3 60 0.95
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:90067 original size:17 final size:19
Alignment explanation
Indices: 90031--90070 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
90021 ATTTTAATAT
90031 TTTTAAATATACTTTATAA
1 TTTTAAATATACTTTATAA
*
90050 TTTTATATA-ACTTT-TAA
1 TTTTAAATATACTTTATAA
90067 TTTT
1 TTTT
90071 TGAGAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 5 0.25
19 8 0.40
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTAAATATACTTTATAA
Found at i:91700 original size:2 final size:2
Alignment explanation
Indices: 91643--91684 Score: 68
Period size: 2 Copynumber: 21.0 Consensus size: 2
91633 ATTTATTTAG
91643 TA TA TA TGA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91685 ATTTCAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 35 0.92
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:91886 original size:22 final size:21
Alignment explanation
Indices: 91857--91909 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
91847 GAAAACGTAT
91857 ATAATATATAATCTTTGAGAAC
1 ATAATATATAATCTTTGA-AAC
* ** *
91879 ATATTATATTGTCTTTGAAAT
1 ATAATATATAATCTTTGAAAC
91900 ATAATATATA
1 ATAATATATA
91910 TTATATAGTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (21 bp):
ATAATATATAATCTTTGAAAC
Found at i:91934 original size:28 final size:28
Alignment explanation
Indices: 91879--91945 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
91869 CTTTGAGAAC
*
91879 ATATTATATTGTCTTTGAAATATAATAT
1 ATATTATATAGTCTTTGAAATATAATAT
**
91907 ATATTATATAGT-TTTTTAATATACATAT
1 ATATTATATAGTCTTTGAAATATA-ATAT
*
91935 ATTACTATATA
1 A-TATTATATA
91946 TTATTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 9 0.27
28 16 0.48
29 8 0.24
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (28 bp):
ATATTATATAGTCTTTGAAATATAATAT
Found at i:93746 original size:19 final size:19
Alignment explanation
Indices: 93722--93758 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
93712 TACCATTCAA
93722 AAAATTGTTATTTTAATAC
1 AAAATTGTTATTTTAATAC
*
93741 AAAATTGTTTTTTTAATA
1 AAAATTGTTATTTTAATA
93759 TATTTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
AAAATTGTTATTTTAATAC
Found at i:94611 original size:3 final size:3
Alignment explanation
Indices: 94603--94656 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
94593 ATCATATCTA
94603 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
94651 AAT AAT
1 AAT AAT
94657 GCTTCAATAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:97453 original size:22 final size:21
Alignment explanation
Indices: 97428--97487 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 21
97418 CGACTTAAAC
97428 TTAAAAATTAATCTATTAATTA
1 TTAAAAATTAAT-TATTAATTA
97450 TT-AAAATTAAAATTATTAATTA
1 TTAAAAATT--AATTATTAATTA
*
97472 TTAAAATTTAAATTAT
1 TTAAAAATT-AATTAT
97488 CCGAGTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 6 0.18
22 20 0.59
23 8 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAAAAATTAATTATTAATTA
Found at i:97463 original size:15 final size:16
Alignment explanation
Indices: 97445--97479 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
97435 TTAATCTATT
97445 AATTATTAA-AATTAA
1 AATTATTAATAATTAA
*
97460 AATTATTAATTATTAA
1 AATTATTAATAATTAA
97476 AATT
1 AATT
97480 TAAATTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATTATTAATAATTAA
Found at i:100430 original size:23 final size:23
Alignment explanation
Indices: 100404--100457 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
100394 TTATGAAAAT
100404 GGCATGAAAGGTTGATATGGACC
1 GGCATGAAAGGTTGATATGGACC
100427 GGCATGAAAGGTTGATATGGACC
1 GGCATGAAAGGTTGATATGGACC
*
100450 TGCATGAA
1 GGCATGAA
100458 CGATCCAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.22
Consensus pattern (23 bp):
GGCATGAAAGGTTGATATGGACC
Found at i:104412 original size:24 final size:24
Alignment explanation
Indices: 104380--104427 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
104370 GATAGAGATT
104380 TGGGAGAGTTGGAAAGTAGCTACC
1 TGGGAGAGTTGGAAAGTAGCTACC
104404 TGGGAGAGTTGGAAAGTAGCTACC
1 TGGGAGAGTTGGAAAGTAGCTACC
104428 AAAGAGAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.38, T:0.21
Consensus pattern (24 bp):
TGGGAGAGTTGGAAAGTAGCTACC
Found at i:104434 original size:24 final size:24
Alignment explanation
Indices: 104383--104434 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
104373 AGAGATTTGG
***
104383 GAGAGTTGGAAAGTAGCTACCTGG
1 GAGAGTTGGAAAGTAGCTACCAAA
104407 GAGAGTTGGAAAGTAGCTACCAAA
1 GAGAGTTGGAAAGTAGCTACCAAA
104431 GAGA
1 GAGA
104435 AGTTCCACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.35, T:0.17
Consensus pattern (24 bp):
GAGAGTTGGAAAGTAGCTACCAAA
Found at i:115113 original size:186 final size:186
Alignment explanation
Indices: 114778--115319 Score: 814
Period size: 186 Copynumber: 2.9 Consensus size: 186
114768 ATCTCCAGAA
* * * ** *
114778 TGACTCGATTTCCTCAACGCGAAGGAACAGTGTCATAATTTATCGAAAACGACTTGATCTCTTTA
1 TGACCCGATTTCCTCAACACGAAGGAACAATGTCATAATTTATCGAAAACGACCCGATCTCTTCA
*
114843 ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATTTCCTCAACACGAAGGAGCAGT
66 ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATCTCCTCAACACGAAGGAGCAGT
* * **
114908 GTCATCCTCAGATAATCAGACTTCCTCATCACGAAGGAACTGTATTGTCCCCAAAT
131 GTCATCCTCAGACAATCAGATTTCCTCATCACGAAGGAACCATATTGTCCCCAAAT
* ** *
114964 TGACCCGATTTTCTCAACACGAAGGAACAACATCATAATTTATCGAAAACGGCCCGATCTCTTCA
1 TGACCCGATTTCCTCAACACGAAGGAACAATGTCATAATTTATCGAAAACGACCCGATCTCTTCA
* ** *
115029 ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATCTCCTCAATACGAATAAGTAGT
66 ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATCTCCTCAACACGAAGGAGCAGT
* *
115094 GTCATCCTCAGACAATCAGATTTCCTCATCAGGAAGGAACCATATTGTCCTCAAAT
131 GTCATCCTCAGACAATCAGATTTCCTCATCACGAAGGAACCATATTGTCCCCAAAT
* *
115150 TGACCCGATTTCCTCAACACGAAGGAACAATGTCATAATTTATCAAAAATGACCCGATCTCTTCA
1 TGACCCGATTTCCTCAACACGAAGGAACAATGTCATAATTTATCGAAAACGACCCGATCTCTTCA
* * *
115215 ACACAGATGAGCAGTGTCGTCTTCAACATCAAATTAACCTGATCTCCTCAACACGAAGGAGCAGT
66 ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATCTCCTCAACACGAAGGAGCAGT
* * * *
115280 GTCATTCTCAGACAATCAGATTTTCTCAACACAAAGGAAC
131 GTCATCCTCAGACAATCAGATTTCCTCATCACGAAGGAAC
115320 ATCGTCATAA
Statistics
Matches: 317, Mismatches: 39, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
186 317 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (186 bp):
TGACCCGATTTCCTCAACACGAAGGAACAATGTCATAATTTATCGAAAACGACCCGATCTCTTCA
ACACGGATGAGCAGTGTCGTCTTCAACATCAAATTGACCCGATCTCCTCAACACGAAGGAGCAGT
GTCATCCTCAGACAATCAGATTTCCTCATCACGAAGGAACCATATTGTCCCCAAAT
Found at i:115327 original size:142 final size:142
Alignment explanation
Indices: 115156--115426 Score: 420
Period size: 142 Copynumber: 1.9 Consensus size: 142
115146 AAATTGACCC
* *
115156 GATTTCCTCAACACGAAGGAACAATGTCATAATTTATCAAAAATGACCCGATCTCTTCAACACAG
1 GATTTCCTCAACACAAAGGAACAATGTCATAATTTATCAAAAACGACCCGATCTCTTCAACACAG
115221 ATGAGCAGTGTCGTCTTCAACATCAAATTAAC-CTGATCTCCTCAACACGAAGGAGCAGTGTCAT
66 ATGAGCAGTGTCGTCTTCAACATCAAATTAACTC-GATCTCCTCAACACGAAGGAGCAGTGTCAT
115285 TCTCAGACAATCA
130 TCTCAGACAATCA
* * * *
115298 GATTTTCTCAACACAAAGGAAC-ATCGTCATAATTTATCAAAAACGACTCGATCTCTTCAATACG
1 GATTTCCTCAACACAAAGGAACAAT-GTCATAATTTATCAAAAACGACCCGATCTCTTCAACACA
* * * *
115362 GATGAGCAGTGTCGTCTTCAACATCAAATTGACTCGATCTCCTCAGCCCGAATGAGCAGTGTCAT
65 GATGAGCAGTGTCGTCTTCAACATCAAATTAACTCGATCTCCTCAACACGAAGGAGCAGTGTCAT
115427 CAGACTTCCT
Statistics
Matches: 117, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
141 2 0.02
142 114 0.97
143 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (142 bp):
GATTTCCTCAACACAAAGGAACAATGTCATAATTTATCAAAAACGACCCGATCTCTTCAACACAG
ATGAGCAGTGTCGTCTTCAACATCAAATTAACTCGATCTCCTCAACACGAAGGAGCAGTGTCATT
CTCAGACAATCA
Found at i:116545 original size:22 final size:23
Alignment explanation
Indices: 116505--116547 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
116495 TTTTTAAATG
* *
116505 ATTTTAGAAAAACTTAAAATTAT
1 ATTTTAGAAAAAATCAAAATTAT
116528 ATTTTA-AAAAAATCAAAATT
1 ATTTTAGAAAAAATCAAAATT
116548 TTCTCAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (23 bp):
ATTTTAGAAAAAATCAAAATTAT
Found at i:116793 original size:26 final size:26
Alignment explanation
Indices: 116754--116807 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
116744 GCATAAGCAA
*
116754 GGAGTTTCGTTTAATTACACGACATT
1 GGAGTTTCGATTAATTACACGACATT
116780 GGAGTTTCGATTAATTACACGACATT
1 GGAGTTTCGATTAATTACACGACATT
116806 GG
1 GG
116808 TGGTAGCCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (26 bp):
GGAGTTTCGATTAATTACACGACATT
Found at i:117091 original size:3 final size:3
Alignment explanation
Indices: 117080--117148 Score: 79
Period size: 3 Copynumber: 23.3 Consensus size: 3
117070 TTAAATAATA
*
117080 TAT TA- TAT TAT TAT TAT TAT TAT AAT TACT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
117124 TAT TAT TAA TAC TAT TAA TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
117149 TTTGCAGACT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
2 4 0.07
3 49 0.88
4 3 0.05
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:120819 original size:16 final size:16
Alignment explanation
Indices: 120798--120852 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
120788 AGTATTACCC
120798 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
120814 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
*
120830 GACCTGTTTTTAACCT
1 GACCTGTTTTCAACCT
120846 GACCTGT
1 GACCTGT
120853 AAATGATCCG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.18, C:0.29, G:0.15, T:0.38
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:121043 original size:13 final size:13
Alignment explanation
Indices: 121033--121059 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
121023 AACCTATTAT
121033 ATAAAATTATTTA
1 ATAAAATTATTTA
121046 ATAAAATTATTTA
1 ATAAAATTATTTA
121059 A
1 A
121060 ATGTAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAAATTATTTA
Found at i:121132 original size:23 final size:25
Alignment explanation
Indices: 121098--121148 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
121088 ATGAAAAGTA
121098 AAATTAATATAGTTTAA-TTTATAT
1 AAATTAATATAGTTTAATTTTATAT
121122 AAATT-ATATAGTTTAATTTTATAT
1 AAATTAATATAGTTTAATTTTATAT
121146 AAA
1 AAA
121149 GAAAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
AAATTAATATAGTTTAATTTTATAT
Found at i:124424 original size:102 final size:102
Alignment explanation
Indices: 124269--124503 Score: 382
Period size: 102 Copynumber: 2.3 Consensus size: 102
124259 ATGAAGAACC
* * * * * *
124269 AACAATAGCAACAAATTAAACAGTTTATTTAAACTGTAAATAAAGGCATCTAACACCCTTATAAA
1 AACAGTAGCTACAAATTAAACAATTTATTTAAACTATAAATAAAGGCAGCTAACAACCTTATAAA
124334 AGCAA-TCTGAATGAACAACCAACAACACAAACAAATA
66 AGCAATTC-GAATGAACAACCAACAACACAAACAAATA
*
124371 AACAGTAGCTACAAATTAAACAATTTATTTAAACTATAAATAAAGGTAGCTAACAACCTTATAAA
1 AACAGTAGCTACAAATTAAACAATTTATTTAAACTATAAATAAAGGCAGCTAACAACCTTATAAA
*
124436 AGCAATTCGAATGAACAACCAACAACACAAACAAATC
66 AGCAATTCGAATGAACAACCAACAACACAAACAAATA
124473 AACAGTAGCTACAAATTAAACAATTTATTTA
1 AACAGTAGCTACAAATTAAACAATTTATTTA
124504 CCTCTTTCAG
Statistics
Matches: 124, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
102 122 0.98
103 2 0.02
ACGTcount: A:0.51, C:0.18, G:0.08, T:0.23
Consensus pattern (102 bp):
AACAGTAGCTACAAATTAAACAATTTATTTAAACTATAAATAAAGGCAGCTAACAACCTTATAAA
AGCAATTCGAATGAACAACCAACAACACAAACAAATA
Found at i:124783 original size:17 final size:17
Alignment explanation
Indices: 124761--124815 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
124751 TTTGAATTCA
124761 GGTTTGAATTTGGGTTG
1 GGTTTGAATTTGGGTTG
**
124778 GGTTTGGGTTTGGGTTTG
1 GGTTTGAATTTGGG-TTG
*
124796 GGTTT-AATTAGGGGTTG
1 GGTTTGAATT-TGGGTTG
124813 GGT
1 GGT
124816 CTGAGTTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 20 0.65
18 11 0.35
ACGTcount: A:0.09, C:0.00, G:0.45, T:0.45
Consensus pattern (17 bp):
GGTTTGAATTTGGGTTG
Done.