Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3838456
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 18
Found at i:3718490 original size:36 final size:37
Alignment explanation
Indices: 3718443--3718523 Score: 128
Period size: 38 Copynumber: 2.2 Consensus size: 37
3718433 CGAGGCCAAA
3718443 TATATATAGTTTT-AAAATATTTTTGAAAATATATAT
1 TATATATAGTTTTGAAAATATTTTTGAAAATATATAT
*
3718479 TATATATAGTTTTGGGAAATATTTTTGAAAATATATAT
1 TATATATAGTTTT-GAAAATATTTTTGAAAATATATAT
*
3718517 AATATAT
1 TATATAT
3718524 TATTATTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 13 0.32
38 28 0.68
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (37 bp):
TATATATAGTTTTGAAAATATTTTTGAAAATATATAT
Found at i:3718548 original size:10 final size:10
Alignment explanation
Indices: 3718521--3718555 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
3718511 ATATATAATA
3718521 TATTATTA-T
1 TATTATTATT
3718530 TATTATTATT
1 TATTATTATT
*
3718540 TATTCTTATT
1 TATTATTATT
3718550 TATTAT
1 TATTAT
3718556 ATGTTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (10 bp):
TATTATTATT
Found at i:3718553 original size:23 final size:23
Alignment explanation
Indices: 3718526--3718572 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
3718516 TAATATATTA
3718526 TTATTAT-TATTATTTATTCTTAT
1 TTATTATATATTATTTATT-TTAT
* *
3718549 TTATTATATGTTTTTTATTTTAT
1 TTATTATATATTATTTATTTTAT
3718572 T
1 T
3718573 AATTCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTATTATATATTATTTATTTTAT
Found at i:3719831 original size:17 final size:17
Alignment explanation
Indices: 3719794--3719836 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
3719784 TATATATATA
*
3719794 TATTAC-TTCTTATTAT
1 TATTACTTTTTTATTAT
3719810 TATTATCTTTTTTATT-T
1 TATTA-CTTTTTTATTAT
3719827 TATTACTTTT
1 TATTACTTTT
3719837 AAAATTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.42
17 7 0.29
18 7 0.29
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTACTTTTTTATTAT
Found at i:3719882 original size:30 final size:30
Alignment explanation
Indices: 3719848--3719941 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 30
3719838 AAATTAACAT
3719848 TTTTTATTTTGATTTATTTAATATT-TTTCA
1 TTTTT-TTTTGATTTATTTAATATTATTTCA
* * * * *
3719878 TTTTTTTTAGTTTTTATTTATTTTTATTTTA
1 TTTTTTTTTG-ATTTATTTAATATTATTTCA
3719909 TTTTTCCCCTTTTGATTTATTTAATATTCATTT
1 TTTTT----TTTTGATTTATTTAATATT-ATTT
3719942 ATTATTGTCT
Statistics
Matches: 48, Mismatches: 9, Indels: 9
0.73 0.14 0.14
Matches are distributed among these distances:
29 4 0.08
30 16 0.33
31 9 0.19
34 11 0.23
35 8 0.17
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.71
Consensus pattern (30 bp):
TTTTTTTTTGATTTATTTAATATTATTTCA
Found at i:3719891 original size:17 final size:16
Alignment explanation
Indices: 3719848--3719911 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 16
3719838 AAATTAACAT
*
3719848 TTTTTATTTTGATTTA
1 TTTTTATTTTTATTTA
*
3719864 TTTAATATTTTTCATTT-
1 TTT-TTATTTTT-ATTTA
3719881 TTTTTAGTTTTTATTTA
1 TTTTTA-TTTTTATTTA
3719898 TTTTTA-TTTTATTT
1 TTTTTATTTTTATTT
3719912 TTCCCCTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
15 8 0.20
16 9 0.22
17 20 0.49
18 4 0.10
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:3722251 original size:24 final size:24
Alignment explanation
Indices: 3722206--3722254 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
3722196 TGGTGGTTGA
*
3722206 TTTAATGGTTGTTTAAACTTTATT
1 TTTAATGGTTATTTAAACTTTATT
*
3722230 TTTAATGGTATATTT-AAGTTTATT
1 TTTAATGGT-TATTTAAACTTTATT
3722254 T
1 T
3722255 GGTTCTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.27, C:0.02, G:0.12, T:0.59
Consensus pattern (24 bp):
TTTAATGGTTATTTAAACTTTATT
Found at i:3732474 original size:23 final size:23
Alignment explanation
Indices: 3732446--3732494 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
3732436 TGGTGGTTGA
*
3732446 TTTAATGGT-TGTTTAAACTTTAT
1 TTTAATGGTATATTT-AACTTTAT
*
3732469 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
3732492 TTT
1 TTT
3732495 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.27, C:0.02, G:0.12, T:0.59
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:3737839 original size:86 final size:85
Alignment explanation
Indices: 3737678--3737841 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 85
3737668 AGGACCTATT
* * * *
3737678 AAATTTACAACATAGCTCAAGGCGAGAATGATTATATGTCAACCAAAACCTTCGAGTTCGATTAC
1 AAATTTACAACATAACTCAAGGCGAGAAGGATTATATGCCAACAAAAACCTTCGAGTTCGATTAC
3737743 ATTCAACTCAAGGGCATACC
66 ATTCAACTCAAGGGCATACC
* * * * * *
3737763 AAATTTGCAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAGCAAAAAACCTTCGAGTTCGATTT
1 AAATTTACAACATAACTCAAGGCGAGAAGGATTATATGCCAAC-AAAAACCTTCGAGTTCGATTA
*
3737828 CATTCAGCTCAAGG
65 CATTCAACTCAAGG
3737842 ACTGTAACAG
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 35 0.52
86 32 0.48
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (85 bp):
AAATTTACAACATAACTCAAGGCGAGAAGGATTATATGCCAACAAAAACCTTCGAGTTCGATTAC
ATTCAACTCAAGGGCATACC
Found at i:3738183 original size:16 final size:17
Alignment explanation
Indices: 3738157--3738189 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
3738147 AAATTTAAGT
3738157 TTGGTTTTGCTCCTTAG
1 TTGGTTTTGCTCCTTAG
3738174 TTGG-TTTGCTCCTTAG
1 TTGGTTTTGCTCCTTAG
3738190 ATGCTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.06, C:0.18, G:0.24, T:0.52
Consensus pattern (17 bp):
TTGGTTTTGCTCCTTAG
Found at i:3738453 original size:73 final size:75
Alignment explanation
Indices: 3738338--3738486 Score: 275
Period size: 73 Copynumber: 2.0 Consensus size: 75
3738328 CATCGACCTA
3738338 ATTAAGATATACGAAGTGTTAGAATTAGATTTAGAACATGTTGGAATTTGAGGGAGATTCTTGAA
1 ATTAAGATATACGAAGTG-TAGAATTAGATTTAGAACATGTTGGAATTTGAGGGAGATTCTTGAA
3738403 TTCTATGTGGG
65 TTCTATGTGGG
3738414 ATTAAGATATACGAAGTG-AGAA-TAGATTTAGAACATGTTGGAATTTGAGGGAGATTCTTGAAT
1 ATTAAGATATACGAAGTGTAGAATTAGATTTAGAACATGTTGGAATTTGAGGGAGATTCTTGAAT
3738477 TCTATGTGGG
66 TCTATGTGGG
3738487 GGTTTGGATT
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
73 51 0.70
74 4 0.05
76 18 0.25
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (75 bp):
ATTAAGATATACGAAGTGTAGAATTAGATTTAGAACATGTTGGAATTTGAGGGAGATTCTTGAAT
TCTATGTGGG
Found at i:3738794 original size:17 final size:19
Alignment explanation
Indices: 3738772--3738816 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
3738762 ATTTGTGTAC
3738772 CGATGCA-A-GTAGTGCAT
1 CGATGCACAGGTAGTGCAT
3738789 CGATGCACAGGTAGTGCAT
1 CGATGCACAGGTAGTGCAT
3738808 CGATGCACA
1 CGATGCACA
3738817 CGTTAAGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 7 0.27
18 1 0.04
19 18 0.69
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (19 bp):
CGATGCACAGGTAGTGCAT
Found at i:3739410 original size:18 final size:18
Alignment explanation
Indices: 3739387--3739421 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
3739377 AGGGATTATC
3739387 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
3739405 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
3739422 AATATTCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:3740707 original size:21 final size:21
Alignment explanation
Indices: 3740682--3740731 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
3740672 ATCCGACAAA
3740682 TGAAGCAAGAGTTCATGAATT
1 TGAAGCAAGAGTTCATGAATT
3740703 TGAAGCAAGAGTTCATGAATT
1 TGAAGCAAGAGTTCATGAATT
3740724 TGAAGCAA
1 TGAAGCAA
3740732 TGGAATCGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (21 bp):
TGAAGCAAGAGTTCATGAATT
Found at i:3745685 original size:24 final size:22
Alignment explanation
Indices: 3745653--3745710 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 22
3745643 ATGCACAAGT
3745653 AGTGCATCGATGCACAC-GTTAAGG
1 AGTGCATCGATGCACACTG-T-A-G
3745677 AGTGCATCGAT--ACACTGTAG
1 AGTGCATCGATGCACACTGTAG
3745697 AGTGCATCGATGCA
1 AGTGCATCGATGCA
3745711 TACCTTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
20 12 0.39
21 1 0.03
22 6 0.19
23 1 0.03
24 11 0.35
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (22 bp):
AGTGCATCGATGCACACTGTAG
Found at i:3746261 original size:18 final size:18
Alignment explanation
Indices: 3746238--3746304 Score: 107
Period size: 18 Copynumber: 3.7 Consensus size: 18
3746228 AGGGATTATC
*
3746238 AGTGGTCCTTCGGGATAT
1 AGTGGTCCTTCGGGACAT
3746256 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
**
3746274 AGTGGTCCTTCGATACAT
1 AGTGGTCCTTCGGGACAT
3746292 AGTGGTCCTTCGG
1 AGTGGTCCTTCGG
3746305 AAAAAATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.16, C:0.21, G:0.31, T:0.31
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:3747738 original size:36 final size:34
Alignment explanation
Indices: 3747675--3747832 Score: 110
Period size: 36 Copynumber: 4.4 Consensus size: 34
3747665 TATTAATTAT
* * *
3747675 TATAATTTTTGAAAATATTTTTGGAAAATATAATA
1 TATAATTTTTGAAAACAGTTTTCGAAAATAT-ATA
*
3747710 TATAATTTTTAGAAAACGGTTTTCGAAAATATATA
1 TATAATTTTT-GAAAACAGTTTTCGAAAATATATA
*
3747745 TATTATATAGTTTTGAAAACA--TTTCAAAAATATATA
1 TA-TA-AT--TTTTGAAAACAGTTTTCGAAAATATATA
* *
3747781 TTATATAGTTTTGAAAA-A-TTTT-AAAACATATATAA
1 -TATA-ATTTTTGAAAACAGTTTTCGAAA-ATATAT-A
3747816 TATATAGTTTTTGAAAA
1 TATA-A-TTTTTGAAAA
3747833 TATATATAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
33 5 0.05
34 24 0.23
35 25 0.24
36 37 0.35
37 4 0.04
38 6 0.06
39 4 0.04
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (34 bp):
TATAATTTTTGAAAACAGTTTTCGAAAATATATA
Found at i:3747839 original size:26 final size:26
Alignment explanation
Indices: 3747799--3747861 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
3747789 TTTTGAAAAA
3747799 TTTT-AAAACATATATAATATATAGT
1 TTTTGAAAACATATATAATATATAGT
*
3747824 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAACATATATAATATATAGT
3747850 TTTTGAAAACAT
1 TTTTGAAAACAT
3747862 TTTTAAAACA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 4 0.11
26 31 0.89
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (26 bp):
TTTTGAAAACATATATAATATATAGT
Found at i:3747877 original size:37 final size:37
Alignment explanation
Indices: 3747823--3748405 Score: 636
Period size: 37 Copynumber: 15.6 Consensus size: 37
3747813 TAATATATAG
*
3747823 TTTTTGAAAATATATATAATATATAGTTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAG-TTTTGAAAACA
* * *
3747861 TTTTT-AAAACATATAT-ATATATA--TAT--ATA-G
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
* *
3747891 TTTTTGAAAACGTATATATTATATAGTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
* *
3747928 -TTTTGAATATATATATAATATATATAGTTTTTGAAAACA
1 TTTTTGAAAACATATAT-A-ATATATAG-TTTTGAAAACA
* * *
3747967 -TTTTGAAAATATATATAATATATAATTTTTTAAAACA
1 TTTTTGAAAACATATATAATATAT-AGTTTTGAAAACA
* *
3748004 TTTTTGAAAACATATATATTATATAGTTTTGAAAATA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
*
3748041 -TTTTGAAAATATATATATATAATATATAGTTTTTGAAAACA
1 TTTTTG--AA-A-ACATATATAATATATAG-TTTTGAAAACA
* *
3748082 -TTTTGAAAATATATATATAATATATAGTTTTTGAAAACCT
1 TTTTTG-AAA-ACATATATAATATATAG-TTTTGAAAA-CA
*
3748122 TTTTTGAAAACTTATATAATATATAGTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
*
3748159 TTTTTGAAAACTTATATAATATATAGTTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAG-TTTTGAAAACA
*
3748197 TTTTTGAAAACTTATATAATATATAGTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
*
3748234 TTTTTGAAAACTTATATAATATATAGTTTTGAAAACA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
*
3748271 TTTTTGAAAAC-TATATAATATATAGTTTTGAAAATA
1 TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
** * *
3748307 TTTTAAAAAATATATATATAATATATAGTTTT-AAAATA
1 TTTT-TGAAA-ACATATATAATATATAGTTTTGAAAACA
* * * *
3748345 TTTTTGAAAATATATATTATATATAGTTTTGGGAAATA
1 TTTTTGAAAACATATATAATATATAGTTTT-GAAAACA
*
3748383 TTTTTG-AAATATATATAATATAT
1 TTTTTGAAAACATATATAATATAT
3748406 TATTATTATT
Statistics
Matches: 483, Mismatches: 37, Indels: 51
0.85 0.06 0.09
Matches are distributed among these distances:
30 5 0.01
31 12 0.02
32 6 0.01
33 2 0.00
34 2 0.00
36 75 0.16
37 145 0.30
38 105 0.22
39 89 0.18
40 22 0.05
41 20 0.04
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAACATATATAATATATAGTTTTGAAAACA
Found at i:3747914 original size:75 final size:75
Alignment explanation
Indices: 3747823--3748404 Score: 506
Period size: 75 Copynumber: 7.7 Consensus size: 75
3747813 TAATATATAG
3747823 TTTTTGAAAATATATATAATATATAGTTTTTGAAAACATTTTTAAAACATATATATATATATATA
1 TTTTT-AAAAT-TATATAATATATAG-TTTTGAAAACATTTTTAAAACATATATATATA-ATATA
3747888 TAGTTTTTGAAAAC
62 TAGTTTTTGAAAAC
* * * *
3747902 ---GT---A-TATAT--TATATAGTTTTGAAAACATTTTGAATATATATATA-AT-ATATATAGT
1 TTTTTAAAATTATATAATATATAGTTTTGAAAACATTTTTAAAACATATATATATAATATATAGT
3747956 TTTTGAAAAC
66 TTTTGAAAAC
* * *
3747966 ATTTTGAAAATATATATAATATATAATTTTTTAAAACATTTTTGAAAAC--ATATATAT--TATA
1 -TTTTTAAAAT-TATATAATATAT-AGTTTTGAAAACATTTTT-AAAACATATATATATAATATA
3748027 TAG-TTTTGAAAA-
62 TAGTTTTTGAAAAC
*
3748039 TATTTTGAAAATATATATATATAATATATAGTTTTTGAAAACA-TTTTGAAA-ATATATATATAA
1 T-TTTT---AA-A-AT-TATATAATATATAG-TTTTGAAAACATTTTTAAAACATATATATATAA
3748102 TATATAGTTTTTGAAAACC
58 TATATAGTTTTTGAAAA-C
3748121 TTTTTTGAAAACTTATATAATATATAGTTTTGAAAACATTTTTGAAAAC---T-TATATAATATA
1 -TTTTT-AAAA-TTATATAATATATAGTTTTGAAAACATTTTT-AAAACATATATATATAATATA
3748182 TAGTTTTTGAAAAC
62 TAGTTTTTGAAAAC
3748196 ATTTTTGAAAACTTATATAATATATAGTTTTGAAAACATTTTTGAAAAC---T-TATATAATATA
1 -TTTTT-AAAA-TTATATAATATATAGTTTTGAAAACATTTTT-AAAACATATATATATAATATA
3748257 TAG-TTTTGAAAAC
62 TAGTTTTTGAAAAC
* * *
3748270 ATTTTTGAAAACTATATAATATATAGTTTTGAAAATA-TTTTAAAAAATATATATATAATATATA
1 -TTTTT-AAAATTATATAATATATAGTTTTGAAAACATTTTTAAAACATATATATATAATATATA
*
3748334 G-TTTT-AAAATA
64 GTTTTTGAAAA-C
* * * * *
3748345 TTTTTGAAAATATATATTATATATAGTTTTGGGAAATATTTTTGAAATATATATAATATA
1 TTTTT-AAAAT-TATATAATATATAGTTTT-GAAAACATTTTTAAAACATATAT-ATATA
3748405 TTATTATTAT
Statistics
Matches: 434, Mismatches: 27, Indels: 85
0.79 0.05 0.16
Matches are distributed among these distances:
64 19 0.04
66 2 0.00
67 25 0.06
68 7 0.02
70 5 0.01
71 5 0.01
72 6 0.01
73 32 0.07
74 45 0.10
75 116 0.27
76 53 0.12
77 42 0.10
78 49 0.11
79 12 0.03
80 11 0.03
82 4 0.01
83 1 0.00
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (75 bp):
TTTTTAAAATTATATAATATATAGTTTTGAAAACATTTTTAAAACATATATATATAATATATAGT
TTTTGAAAAC
Found at i:3747920 original size:25 final size:27
Alignment explanation
Indices: 3747876--3747926 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 27
3747866 AAAACATATA
3747876 TATATATATATATAGTTTTTGAAAACG
1 TATATATATATATAGTTTTTGAAAACG
3747903 TATATAT-TATATAG-TTTTGAAAAC
1 TATATATATATATAGTTTTTGAAAAC
3747927 ATTTTGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 10 0.42
26 7 0.29
27 7 0.29
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (27 bp):
TATATATATATATAGTTTTTGAAAACG
Found at i:3748411 original size:3 final size:3
Alignment explanation
Indices: 3748403--3748448 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
3748393 ATATATAATA
* *
3748403 TAT TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
3748449 TATATTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:3749580 original size:3 final size:3
Alignment explanation
Indices: 3749572--3749600 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
3749562 ATATATATAC
3749572 TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3749601 CTTTTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:3749626 original size:7 final size:7
Alignment explanation
Indices: 3749616--3749690 Score: 53
Period size: 7 Copynumber: 10.1 Consensus size: 7
3749606 AAAATTTAAC
3749616 ATTTTTT
1 ATTTTTT
3749623 ATTTTTT
1 ATTTTTT
*
3749630 CCTTTGATTT
1 -ATTT--TTT
**
3749640 ATTTAAT
1 ATTTTTT
*
3749647 ATTTTTC
1 ATTTTTT
*
3749654 ATTTTTC
1 ATTTTTT
3749661 ATTTTTT
1 ATTTTTT
3749668 ATTTATTT
1 ATTT-TTT
3749676 -TTATTTT
1 ATT-TTTT
3749683 ATTTTTT
1 ATTTTTT
3749690 A
1 A
3749691 CCCTTTTGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
7 39 0.72
8 9 0.17
9 3 0.06
10 3 0.06
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (7 bp):
ATTTTTT
Found at i:3749644 original size:31 final size:31
Alignment explanation
Indices: 3749609--3749711 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 31
3749599 TACTTTTAAA
*
3749609 ATTTAACATTTTTTATTTTTTCCTTTGATTT
1 ATTTAATATTTTTTATTTTTTCCTTTGATTT
* *
3749640 ATTTAATATTTTTCA-TTTTTCATTT--TTT
1 ATTTAATATTTTTTATTTTTTCCTTTGATTT
* *
3749668 ATTTATTTTTATTTTATTTTTTACCCTTTTGATTT
1 ATTTAATATT-TTTTATTTTTT--CC-TTTGATTT
3749703 ATTT-ATATT
1 ATTTAATATT
3749712 CAATTATTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
28 11 0.20
29 4 0.07
30 14 0.25
31 13 0.23
32 1 0.02
33 3 0.05
34 3 0.05
35 7 0.12
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (31 bp):
ATTTAATATTTTTTATTTTTTCCTTTGATTT
Found at i:3749664 original size:25 final size:24
Alignment explanation
Indices: 3749636--3749690 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
3749626 TTTTCCTTTG
3749636 ATTTATTTA-ATATTTTTCATTTTTC
1 ATTT-TTTATATATTTTT-ATTTTTC
*
3749661 ATTTTTTATTTATTTTTA-TTTT-
1 ATTTTTTATATATTTTTATTTTTC
3749683 ATTTTTTA
1 ATTTTTTA
3749691 CCCTTTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 8 0.29
23 4 0.14
24 5 0.18
25 11 0.39
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (24 bp):
ATTTTTTATATATTTTTATTTTTC
Found at i:3751671 original size:41 final size:41
Alignment explanation
Indices: 3751614--3751695 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
3751604 TACTCAAATT
*
3751614 GAAACCCTTGAAATTCTATGAATGTTTTTTACCATGGAGAA
1 GAAACCCTTGAAATTCTATGAATATTTTTTACCATGGAGAA
* **
3751655 GAAACTCTTGAAATTCTATGAATATTTTTTACTTTGGAGAA
1 GAAACCCTTGAAATTCTATGAATATTTTTTACCATGGAGAA
3751696 ATAGAGATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (41 bp):
GAAACCCTTGAAATTCTATGAATATTTTTTACCATGGAGAA
Found at i:3756400 original size:20 final size:20
Alignment explanation
Indices: 3756375--3756416 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3756365 AAATAAAATA
* *
3756375 AAAATAGAACAAGATAAGAC
1 AAAATAAAACAAGACAAGAC
*
3756395 AAAATAAAATAAGACAAGAC
1 AAAATAAAACAAGACAAGAC
3756415 AA
1 AA
3756417 TAAGGTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.69, C:0.10, G:0.12, T:0.10
Consensus pattern (20 bp):
AAAATAAAACAAGACAAGAC
Found at i:3757251 original size:23 final size:22
Alignment explanation
Indices: 3757168--3757244 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
3757158 TAAATAAAAA
* *
3757168 TTAGTGGTTAG--TGTTAACGG
1 TTAGTGGTTAGAAAGTTAAAGG
* *
3757188 TTAGTGGTTAGCAA-TTAAAAATG
1 TTAGTGGTTAGAAAGTT--AAAGG
*
3757211 TTAGTTGTTAGAAAAGTTAAAGG
1 TTAGTGGTTAG-AAAGTTAAAGG
3757234 TTAGTGGTTAG
1 TTAGTGGTTAG
3757245 GAGAGTTCAG
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
20 11 0.25
21 2 0.05
23 27 0.61
24 2 0.05
25 2 0.05
ACGTcount: A:0.31, C:0.03, G:0.29, T:0.38
Consensus pattern (22 bp):
TTAGTGGTTAGAAAGTTAAAGG
Found at i:3757803 original size:17 final size:17
Alignment explanation
Indices: 3757781--3757820 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
3757771 AGGAACTGCC
*
3757781 TTTTTTTCTTTTT-CTT
1 TTTTTTTTTTTTTGCTT
3757797 TTTTTTTTTTTTTGCTT
1 TTTTTTTTTTTTTGCTT
3757814 TTTTTTT
1 TTTTTTT
3757821 AACTTACACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (17 bp):
TTTTTTTTTTTTTGCTT
Found at i:3761318 original size:30 final size:29
Alignment explanation
Indices: 3761275--3761345 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
3761265 GATATAACTG
** *
3761275 AATATTTTCTTTTGAACATTTA-TATTATTA
1 AATATTTAATTTTG-ACATTTATTA-CATTA
*
3761305 AATATTTAATTTTGTCATTTATTACATTA
1 AATATTTAATTTTGACATTTATTACATTA
3761334 AAT-TTTAATTTT
1 AATATTTAATTTT
3761346 ATATTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 9 0.25
29 13 0.36
30 14 0.39
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.58
Consensus pattern (29 bp):
AATATTTAATTTTGACATTTATTACATTA
Found at i:3769248 original size:3 final size:3
Alignment explanation
Indices: 3769240--3769324 Score: 161
Period size: 3 Copynumber: 28.3 Consensus size: 3
3769230 TTTTACCCAC
3769240 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
3769288 ATT ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
3769325 AATATATATT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:3769351 original size:14 final size:15
Alignment explanation
Indices: 3769323--3769357 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
3769313 TTATTATTAT
3769323 TAAATATATATTAAA
1 TAAATATATATTAAA
*
3769338 TAAATCTATA-TAAA
1 TAAATATATATTAAA
3769352 TAAATA
1 TAAATA
3769358 ATTACAGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATATATATTAAA
Found at i:3771539 original size:15 final size:13
Alignment explanation
Indices: 3771519--3771556 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
3771509 TTTATATGTT
3771519 TTATTTTATTTGCAA
1 TTATTTTATTT-C-A
3771534 TTATTTTATTTCA
1 TTATTTTATTTCA
3771547 TTA-TTTATTT
1 TTATTTTATTT
3771557 TTCTGTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 1 0.04
15 11 0.48
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (13 bp):
TTATTTTATTTCA
Found at i:3778616 original size:21 final size:20
Alignment explanation
Indices: 3778592--3778630 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3778582 AGATGGCAAT
*
3778592 CATTATTTACATTTTTTTTTA
1 CATT-TTTACATTTATTTTTA
3778613 CATTTTTACATTTATTTT
1 CATTTTTACATTTATTTT
3778631 CATAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (20 bp):
CATTTTTACATTTATTTTTA
Found at i:3782487 original size:20 final size:20
Alignment explanation
Indices: 3782458--3782512 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
3782448 ATTTTGAATA
*
3782458 CAATTCTATTTATTT-GAGATT
1 CAATT-TATTT-TTTGGAAATT
3782479 CAATTTATTTTTTGGAAATT
1 CAATTTATTTTTTGGAAATT
3782499 CAATTTATTCTTTT
1 CAATTTATT-TTTT
3782513 CTATTGAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 3 0.10
20 19 0.61
21 9 0.29
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.56
Consensus pattern (20 bp):
CAATTTATTTTTTGGAAATT
Found at i:3783410 original size:83 final size:83
Alignment explanation
Indices: 3783275--3783659 Score: 594
Period size: 83 Copynumber: 4.6 Consensus size: 83
3783265 TAAATGGAAG
* * * *
3783275 ATGAATGTGTTCATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACC
1 ATGAATTTGTCCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
* *
3783340 AATCATTGAATTTAGAAG
66 AATCATTGAATTCAGAAC
3783358 ATGAATTTG-CCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAAC
1 ATGAATTTGTCC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAAC
*
3783422 CAATCATTGAATTCGGAAC
65 CAATCATTGAATTCAGAAC
* * *
3783441 ATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCTGATCTGGTTTGGCAGAACC
1 ATGAATTTGTCCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
* * *
3783506 AATCATTGAGTTTAGAAG
66 AATCATTGAATTCAGAAC
3783524 ATGAATTTG-CCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAAC
1 ATGAATTTGTCC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAAC
*
3783588 CAATCATTGAATTCGGAAC
65 CAATCATTGAATTCAGAAC
*
3783607 ATGAATGTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 ATGAAT-TTGTCCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
3783660 ATTCAGTAGG
Statistics
Matches: 275, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
82 2 0.01
83 228 0.83
84 44 0.16
85 1 0.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (83 bp):
ATGAATTTGTCCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACC
AATCATTGAATTCAGAAC
Found at i:3783549 original size:166 final size:166
Alignment explanation
Indices: 3783270--3783659 Score: 726
Period size: 166 Copynumber: 2.3 Consensus size: 166
3783260 ACAATTAAAT
* * *
3783270 GGAAGATGAATGTGTTCATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1 GGAACATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
3783335 GAACCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
66 GAACCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
3783400 ATCTGATCTGGTTTGGCAGAACCAATCATTGAATTC
131 ATCTGATCTGGTTTGGCAGAACCAATCATTGAATTC
*
3783436 GGAACATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCTGATCTGGTTTGGCA
1 GGAACATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
*
3783501 GAACCAATCATTGAGTTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
66 GAACCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
3783566 ATCTGATCTGGTTTGGCAGAACCAATCATTGAATTC
131 ATCTGATCTGGTTTGGCAGAACCAATCATTGAATTC
3783602 GGAACATGAATGTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 GGAACATGAATG-TGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
3783660 ATTCAGTAGG
Statistics
Matches: 217, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
166 173 0.80
167 44 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (166 bp):
GGAACATGAATGTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
GAACCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
ATCTGATCTGGTTTGGCAGAACCAATCATTGAATTC
Found at i:3784548 original size:107 final size:109
Alignment explanation
Indices: 3784291--3784670 Score: 503
Period size: 107 Copynumber: 3.5 Consensus size: 109
3784281 GATGGATCAG
*
3784291 TTTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
1 TTTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAA-G--GAAGAAGTTCATAATGAG
* * * * *
3784355 AA-AATTTGTTCAACCTTTTACGGAATCCATC-ATTGATGGATCAGC
63 AAGAATTTGTTCAACCTTTTTCTGAATTCATCAATTGATGGATTATC
* *
3784400 CTTTCTAGAGAAAGTTCATAAT--GAAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAG
1 TTTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAG
3784463 AATTTGTTCAACCTTTTTCTGAATTCATCAATTGATGGATTATC
66 AATTTGTTCAACCTTTTTCTGAATTCATCAATTGATGGATTATC
*
3784507 TTTTCCAGAG-AGGTTCATAATGA-AAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAG
1 TTTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAG
3784570 AATTTGTTCAACCTTTTTCTGAATTCATCAAATTGATGGATTATC
66 AATTTGTTCAACCTTTTTCTGAATTCATC-AATTGATGGATTATC
* *
3784615 TTTGCCAG-GTAGAG-T--TAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAAGTTCA
1 TTTTCCAGAG-AAAGTTCATAATGAGAAGAACT--T-ATCTGAAGAAGGAAG-AAGTTCA
3784671 AGAACTTATC
Statistics
Matches: 244, Mismatches: 14, Indels: 24
0.87 0.05 0.09
Matches are distributed among these distances:
105 20 0.08
106 42 0.17
107 98 0.40
108 41 0.17
109 10 0.04
110 26 0.11
111 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (109 bp):
TTTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAG
AATTTGTTCAACCTTTTTCTGAATTCATCAATTGATGGATTATC
Found at i:3784742 original size:250 final size:246
Alignment explanation
Indices: 3784423--3784915 Score: 811
Period size: 250 Copynumber: 2.0 Consensus size: 246
3784413 GTTCATAATG
3784423 AAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGAATT
1 AAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGAATT
3784488 CATCAATTGATGGATTATCTTTTCCAGAG-AGGTTCATAATGA-AAGAACTTATCTGAAGAA-G-
66 CATCAATTGATGG---ATC-TTTCCAGAGAAGGTTCATAATGAGAAGAAC-TATCTGAAGAAGGA
3784549 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACC-TTTTTCTGAATTCATCAAATTGATGGATTA
126 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATC-AA--GATGGATTA
*
3784613 TCTTTGCCAGGTAGAG-T-TAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAAGTTC
188 TCTTTGCCAGGTAGAGTTATAATGAGAAGAACCCGTCATCTGAAGAAGGAAGAAAGTTC
3784670 AAGAACTTATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGA
1 AAGAACTTATCTGAAGAAGG-A-A-GAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGA
3784735 ATTCATCAATTGATGGATCTTTCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGGAAG
63 ATTCATCAATTGATGGATCTTTCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGG-AG
3784800 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAAGATGGATTATCTT
127 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAAGATGGATTATCTT
3784865 TGCCAGGTAGAGTTCATAATGAGAAGAACCCGTCATCTGAAGAAGGAAGAA
192 TGCCAGGTAGAGTT-ATAATGAGAAGAACCCGTCATCTGAAGAAGGAAGAA
3784916 GAAGTTCATA
Statistics
Matches: 233, Mismatches: 1, Indels: 20
0.92 0.00 0.08
Matches are distributed among these distances:
246 9 0.04
247 47 0.20
248 33 0.14
249 2 0.01
250 92 0.39
251 50 0.21
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (246 bp):
AAGAACTTATCTGAAGAAGGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGAATT
CATCAATTGATGGATCTTTCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGGAGAAGA
AGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCAAGATGGATTATCTTTGCC
AGGTAGAGTTATAATGAGAAGAACCCGTCATCTGAAGAAGGAAGAAAGTTC
Found at i:3785052 original size:111 final size:113
Alignment explanation
Indices: 3784670--3785138 Score: 608
Period size: 111 Copynumber: 4.2 Consensus size: 113
3784660 AAGAAAGTTC
* * * *
3784670 AAGAACTTATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTC-TG
1 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTG
*
3784734 AATTCATCAATTGATGGATC-T--TT-CCAGAGAAG-GTTCATAATGAG
66 AATTCATC-ATTGATGGATCATCATTGCCAGAGTAGAGTTCATAATGAG
* *
3784778 AAGAACT-ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT-TTCT
1 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCT-T
* * *
3784841 GAATTCATCA-AGATGGATTATCTTTGCCAG-GTAGAGTTCATAATGAG
65 GAATTCATCATTGATGGATCATCATTGCCAGAGTAGAGTTCATAATGAG
*
3784888 AAGAACCCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGC
1 AAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
*
3784953 TTGAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAG-TCATAATGAG
63 TTGAATTCATCA-TTGATGGATCATCATTGCCAGAGTAGAGTTCATAATGAG
* * *
3785003 AAGAACTCGTCT-ATGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTG
1 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTG
* *
3785067 AATTCATCATTGATGGATCATCA-TCCCAGCAG-AAAGTTCATAATGAG
66 AATTCATCATTGATGGATCATCATTGCCAG-AGTAGAGTTCATAATGAG
*
3785114 AAGAACTCATCTGAAGAAAGAAGAA
1 AAGAACTCATCTGAAGAAGGAAGAA
3785139 TTTATTCAAT
Statistics
Matches: 323, Mismatches: 20, Indels: 32
0.86 0.05 0.09
Matches are distributed among these distances:
106 7 0.02
107 53 0.16
108 17 0.05
109 10 0.03
110 37 0.11
111 82 0.25
112 16 0.05
113 2 0.01
114 61 0.19
115 16 0.05
116 22 0.07
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (113 bp):
AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTG
AATTCATCATTGATGGATCATCATTGCCAGAGTAGAGTTCATAATGAG
Found at i:3785071 original size:225 final size:218
Alignment explanation
Indices: 3784670--3785138 Score: 599
Period size: 225 Copynumber: 2.1 Consensus size: 218
3784660 AAGAAAGTTC
* * * *
3784670 AAGAACTTATCTGAAGAAGGAAGAGGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTCTGA
1 AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTGA
*
3784735 ATTCATCAATTGATGGATCTTTCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGGAAG
66 ATTCATCAATTGATGGATCTTGCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGGAAG
* * *
3784800 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATTCATCA-AGATGGATTATCT
131 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCTCTGAATTCATCATAGATGGATCATC-
* * *
3784864 TTGCCAG-GTAGAGTTCATAATGAG
195 ATCCCAGAG-AAAGTTCATAATGAG
*
3784888 AAGAACCCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGC
1 AAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
3784953 TTGAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAG-TCATAATGAGAAGAACTCGTCT-
63 -TGAATTCATCAATTGATGGAT---C-TTGCCAGAGAAG-GTTCATAATGAGAAGAACT-ATCTG
* * *
3785015 ATGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCT-TGAATTCATCATTG
121 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT-CTCTGAATTCATCATAG
3785079 ATGGATCATCATCCCAGCAGAAAGTTCATAATGAG
185 ATGGATCATCATCCCAG-AGAAAGTTCATAATGAG
*
3785114 AAGAACTCATCTGAAGAAAGAAGAA
1 AAGAACTCATCTGAAGAAGGAAGAA
3785139 TTTATTCAAT
Statistics
Matches: 218, Mismatches: 19, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
218 5 0.02
220 1 0.00
221 51 0.23
222 20 0.09
223 18 0.08
224 1 0.00
225 81 0.37
226 40 0.18
227 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (218 bp):
AAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTGA
ATTCATCAATTGATGGATCTTGCCAGAGAAGGTTCATAATGAGAAGAACTATCTGAAGAAGGAAG
AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCTCTGAATTCATCATAGATGGATCATCA
TCCCAGAGAAAGTTCATAATGAG
Found at i:3785278 original size:3 final size:3
Alignment explanation
Indices: 3785270--3785335 Score: 102
Period size: 3 Copynumber: 23.0 Consensus size: 3
3785260 TTTTTACCAC
3785270 TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
3785316 TCA TTA TTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
3785336 AATTATATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
2 6 0.10
3 52 0.90
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:3785341 original size:34 final size:34
Alignment explanation
Indices: 3785270--3785345 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
3785260 TTTTTACCAC
* *
3785270 TTATTATTATTATTATTATTATTATATTTTATTA
1 TTATTATTATTATCATTATTATTATATTTTATAA
3785304 TTATTATTATTATCATTATTATTATATTATTA-AA
1 TTATTATTATTATCATTATTATTATATT-TTATAA
3785338 TTA-TATTA
1 TTATTATTA
3785346 AATAATCATA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
33 5 0.13
34 31 0.79
35 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (34 bp):
TTATTATTATTATCATTATTATTATATTTTATAA
Found at i:3785344 original size:18 final size:21
Alignment explanation
Indices: 3785270--3785335 Score: 84
Period size: 19 Copynumber: 3.3 Consensus size: 21
3785260 TTTTTACCAC
*
3785270 TTATTATTATTATTATTATTA
1 TTATTATTATTATTATTATAA
*
3785291 TTA-TATT-TTATTATTATTA
1 TTATTATTATTATTATTATAA
*
3785310 TTATTATCATTATTATTAT-A
1 TTATTATTATTATTATTATAA
3785330 TTATTA
1 TTATTA
3785336 AATTATATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
19 15 0.36
20 14 0.33
21 13 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATTATTATTATTATTATAA
Found at i:3785345 original size:18 final size:21
Alignment explanation
Indices: 3785270--3785345 Score: 95
Period size: 22 Copynumber: 3.7 Consensus size: 21
3785260 TTTTTACCAC
*
3785270 TTATTATTATTATTATTATTA
1 TTATAATTATTATTATTATTA
*
3785291 TTATATTTTATTATTATTATTA
1 TTATA-ATTATTATTATTATTA
*
3785313 TTATCATTATTATTA-TATTA
1 TTATAATTATTATTATTATTA
3785333 TTA-AATTA-TATTA
1 TTATAATTATTATTA
3785346 AATAATCATA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.10
19 4 0.08
20 8 0.16
21 13 0.27
22 19 0.39
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATAATTATTATTATTATTA
Found at i:3789380 original size:36 final size:36
Alignment explanation
Indices: 3789339--3789414 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
3789329 ATTTTCGGGA
*
3789339 TTTTGCTATTTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
3789375 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
3789411 TTTT
1 TTTT
3789415 TTTTGCTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
Found at i:3794320 original size:32 final size:32
Alignment explanation
Indices: 3794283--3794344 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
3794273 ATTTGCTATT
*
3794283 TTTGGCAAAATTCGAATAAATACGATTTTTGC
1 TTTGGCAAAATTCGAATAAAGACGATTTTTGC
3794315 TTTGGCAAAATTCGAATAAAGACGATTTTT
1 TTTGGCAAAATTCGAATAAAGACGATTTTT
3794345 TTTTGCTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.37
Consensus pattern (32 bp):
TTTGGCAAAATTCGAATAAAGACGATTTTTGC
Found at i:3794728 original size:21 final size:22
Alignment explanation
Indices: 3794702--3794743 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
3794692 AACACATGAT
*
3794702 ATAAAATAA-AATATTTACAAC
1 ATAAAATAACAACATTTACAAC
3794723 ATAAAATAACAACATTTACAA
1 ATAAAATAACAACATTTACAA
3794744 TATGTACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (22 bp):
ATAAAATAACAACATTTACAAC
Found at i:3794872 original size:30 final size:31
Alignment explanation
Indices: 3794826--3794992 Score: 143
Period size: 29 Copynumber: 5.6 Consensus size: 31
3794816 AATATTTGAA
*
3794826 CTTACAAGGACCAAAATAGAAAAAAT-GAAAT
1 CTTA-AAGGACTAAAATAGAAAAAATAGAAAT
* * * *
3794857 CTTAAAGTACTAAAAT-GACACAAACAAAAAT
1 CTTAAAGGACTAAAATAGA-AAAAATAGAAAT
* *
3794888 -TTAAGGGACTAAAATAGAAAAAATAGAGA-
1 CTTAAAGGACTAAAATAGAAAAAATAGAAAT
* * * * *
3794917 CATCAGGGACT-AAATAGCAAAAATAGACAT
1 CTTAAAGGACTAAAATAGAAAAAATAGAAAT
*
3794947 -TTAAAGGACTAAAATAG-CAAAATAGAAA-
1 CTTAAAGGACTAAAATAGAAAAAATAGAAAT
3794975 CTTAAAGGACTAAAATAG
1 CTTAAAGGACTAAAATAG
3794993 TATTAACAAA
Statistics
Matches: 109, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
29 51 0.47
30 48 0.44
31 10 0.09
ACGTcount: A:0.56, C:0.11, G:0.14, T:0.18
Consensus pattern (31 bp):
CTTAAAGGACTAAAATAGAAAAAATAGAAAT
Found at i:3794955 original size:29 final size:30
Alignment explanation
Indices: 3794824--3794992 Score: 148
Period size: 30 Copynumber: 5.7 Consensus size: 30
3794814 TAAATATTTG
* *
3794824 AACTTACAAGGACCAAAATAGAAAAAAT-GA
1 AACTTA-AAGGACTAAAATAGCAAAAATAGA
* * * *
3794854 AATCTTAAAGTACTAAAAT-GACACAAACAAA
1 AA-CTTAAAGGACTAAAATAG-CAAAAATAGA
* * *
3794885 AATTTAAGGGACTAAAATAGAAAAAATAGA
1 AACTTAAAGGACTAAAATAGCAAAAATAGA
* * * *
3794915 GACATCAGGGACT-AAATAGCAAAAATAGA
1 AACTTAAAGGACTAAAATAGCAAAAATAGA
* *
3794944 CATTTAAAGGACTAAAATAGC-AAAATAGA
1 AACTTAAAGGACTAAAATAGCAAAAATAGA
3794973 AACTTAAAGGACTAAAATAG
1 AACTTAAAGGACTAAAATAG
3794993 TATTAACAAA
Statistics
Matches: 109, Mismatches: 25, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
29 50 0.46
30 51 0.47
31 8 0.07
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (30 bp):
AACTTAAAGGACTAAAATAGCAAAAATAGA
Found at i:3794991 original size:59 final size:59
Alignment explanation
Indices: 3794831--3795018 Score: 150
Period size: 59 Copynumber: 3.2 Consensus size: 59
3794821 TTGAACTTAC
* * * *
3794831 AAGGACCAAAATAGAAAAAATGAAATCTTAAAGTACTAAAAT-GACACAAACAAAAATTTA
1 AAGGACTAAAATAGAAAATA-GAAA-CTTAAAGGACTAAAATAGACAAAAACAAAAATTTA
* * * * * * * *
3794891 AGGGACTAAAATAGAAAAAATAGAGACATCAGGGACT-AAATAG-CAAAAATAGACATTTA
1 AAGGACTAAAATAG--AAAATAGAAACTTAAAGGACTAAAATAGACAAAAACAAAAATTTA
* ** *
3794950 AAGGACTAAAATAGCAAAATAGAAACTTAAAGGACTAAAATAG-TATTAACAAAAATTAA
1 AAGGACTAAAATAG-AAAATAGAAACTTAAAGGACTAAAATAGACAAAAACAAAAATTTA
*
3795009 AAGGGCTAAA
1 AAGGACTAAA
3795019 CAGTAATTAC
Statistics
Matches: 98, Mismatches: 26, Indels: 9
0.74 0.20 0.07
Matches are distributed among these distances:
58 17 0.17
59 53 0.54
60 20 0.20
61 3 0.03
62 5 0.05
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.18
Consensus pattern (59 bp):
AAGGACTAAAATAGAAAATAGAAACTTAAAGGACTAAAATAGACAAAAACAAAAATTTA
Found at i:3795008 original size:29 final size:29
Alignment explanation
Indices: 3794831--3795018 Score: 82
Period size: 30 Copynumber: 6.3 Consensus size: 29
3794821 TTGAACTTAC
* * *
3794831 AAGGACCAAAATAG-AAAAAATGAAATCTTA
1 AAGGACTAAAATAGCAAAACA-GAAA-ATTA
*
3794861 AAGTACTAAAAT-GACACAAACA-AAAATTTA
1 AAGGACTAAAATAG-CA-AAACAGAAAA-TTA
* * * * *
3794891 AGGGACTAAAATAGAAAAAATAGAGACA-TC
1 AAGGACTAAAATAG-CAAAACAGA-AAATTA
* * * *
3794921 AGGGACT-AAATAGCAAAAATAGACATTTA
1 AAGGACTAAAATAGC-AAAACAGAAAATTA
* *
3794950 AAGGACTAAAATAGCAAAATAGAAACTTA
1 AAGGACTAAAATAGCAAAACAGAAAATTA
* *
3794979 AAGGACTAAAATAGTATTAACA-AAAATTAA
1 AAGGACTAAAATAGCA-AAACAGAAAATT-A
*
3795009 AAGGGCTAAA
1 AAGGACTAAA
3795019 CAGTAATTAC
Statistics
Matches: 123, Mismatches: 23, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
29 54 0.44
30 58 0.47
31 5 0.04
32 6 0.05
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.18
Consensus pattern (29 bp):
AAGGACTAAAATAGCAAAACAGAAAATTA
Found at i:3796509 original size:14 final size:16
Alignment explanation
Indices: 3796490--3796531 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
3796480 AGGCCTACAA
3796490 AAATTAAAA-AAT-AT
1 AAATTAAAATAATAAT
3796504 AAATTATATAATAATAAT
1 AAATTA-A-AATAATAAT
3796522 AAATTAAAAT
1 AAATTAAAAT
3796532 TAAATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 6 0.25
15 1 0.04
16 5 0.21
17 4 0.17
18 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTAAAATAATAAT
Found at i:3797128 original size:66 final size:66
Alignment explanation
Indices: 3797024--3797184 Score: 224
Period size: 66 Copynumber: 2.5 Consensus size: 66
3797014 TCAAAGATCT
3797024 TTTTGTTTC-AAGGAAAT-GACTC-AAGATGTTTTTCTCAAAAGAAATTG-TCAAGGAAACGACA
1 TTTTGTTTCAAAGGAAATAGACTCAAAGATGTTTTTCTCAAAAGAAATTGCTCAA-GAAA-GACA
3797085 AAA
64 AAA
* *
3797088 TTTTGTTTCAAAGGAAATAAACTCAAAGA-GTTTTTCTCAAAAGAAATTGTCTCAAGAGAGACAA
1 TTTTGTTTCAAAGGAAATAGACTCAAAGATGTTTTTCTCAAAAGAAATTG-CTCAAGAAAGACAA
3797152 AA
65 AA
**
3797154 TTTTGTTTCAAAATAAATAGACTCAAAGATG
1 TTTTGTTTCAAAGGAAATAGACTCAAAGATG
3797185 ATGTGTTTCA
Statistics
Matches: 86, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
64 9 0.10
65 8 0.09
66 57 0.66
67 8 0.09
68 4 0.05
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (66 bp):
TTTTGTTTCAAAGGAAATAGACTCAAAGATGTTTTTCTCAAAAGAAATTGCTCAAGAAAGACAAA
A
Found at i:3797462 original size:28 final size:28
Alignment explanation
Indices: 3797419--3797588 Score: 108
Period size: 28 Copynumber: 5.6 Consensus size: 28
3797409 AAGATGGTAA
*
3797419 ATTTTGTTTCCAAAGAAACAGACTCAAAG
1 ATTTT-TTTCAAAAGAAACAGACTCAAAG
* * *
3797448 ATTTTTCTCAAAAGAAACTGTCTCAAGAGAG
1 ATTTTTTTCAAAAGAAACAGACTC-A-A-AG
* *
3797479 ACAAAATTTTGTTTCCAAATAAACAGACTCAAAG
1 -----ATTTT-TTTCAAAAGAAACAGACTCAAAG
* *
3797513 ATGATTTTGTT-AAGAGAAACATACTCAAAG
1 AT--TTTT-TTCAAAAGAAACAGACTCAAAG
* *
3797543 ATTTTTTTCAAAAGGAACATACTCAAAG
1 ATTTTTTTCAAAAGAAACAGACTCAAAG
* *
3797571 ATTTGTTTCAAGAGAAAC
1 ATTTTTTTCAAAAGAAAC
3797589 TGTCTTAAGA
Statistics
Matches: 110, Mismatches: 18, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
27 2 0.02
28 51 0.46
29 8 0.07
30 19 0.17
31 7 0.06
34 2 0.02
35 1 0.01
36 6 0.05
37 14 0.13
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (28 bp):
ATTTTTTTCAAAAGAAACAGACTCAAAG
Found at i:3797503 original size:65 final size:63
Alignment explanation
Indices: 3797417--3797609 Score: 163
Period size: 65 Copynumber: 3.1 Consensus size: 63
3797407 CAAAGATGGT
3797417 AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTCAAAAGAAACTGTCTCAAGAGAGACA
1 AAATTTTGTTT-CAAAGAAACAGACTCAAAGATTTTT-TCAAAAGAAACTGTCTCAAGAGAGACA
* * * *
3797482 AAATTTTGTTTCCAAATAAACAGACTCAAAGATGATTTTGTTAAGAGAAACAT-ACTC-A-A-AG
1 AAATTTTGTTT-CAAAGAAACAGACTCAAAGAT--TTTT-TCAAAAGAAAC-TGTCTCAAGAGAG
3797543 ---
61 ACA
* * * *
3797543 --ATTTT-TTTCAAAAGGAACATACTCAAAGATTTGTTTCAAGAGAAACTGTCTTAAGAGAGACA
1 AAATTTTGTTTC-AAAGAAACAGACTCAAAGATTT-TTTCAAAAGAAACTGTCTCAAGAGAGACA
3797605 AAATT
1 AAATT
3797610 CGTTTTAAGA
Statistics
Matches: 103, Mismatches: 11, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
55 1 0.01
56 14 0.14
57 4 0.04
58 21 0.20
59 7 0.07
64 5 0.05
65 33 0.32
66 1 0.01
67 16 0.16
68 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (63 bp):
AAATTTTGTTTCAAAGAAACAGACTCAAAGATTTTTTCAAAAGAAACTGTCTCAAGAGAGACA
Found at i:3798255 original size:16 final size:16
Alignment explanation
Indices: 3798234--3798264 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3798224 TCATGTATCT
*
3798234 TGTATGTATGTGTTGG
1 TGTATGTATATGTTGG
3798250 TGTATGTATATGTTG
1 TGTATGTATATGTTG
3798265 ATCTGCGAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (16 bp):
TGTATGTATATGTTGG
Found at i:3805324 original size:21 final size:22
Alignment explanation
Indices: 3805300--3805340 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3805290 ACATATGATG
*
3805300 TAAAAT-AAAATATTTACAACA
1 TAAAATAAAAACATTTACAACA
3805321 TAAAATAAAAACATTTACAA
1 TAAAATAAAAACATTTACAA
3805341 TATGTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAATAAAAACATTTACAACA
Found at i:3805451 original size:29 final size:28
Alignment explanation
Indices: 3805419--3805646 Score: 178
Period size: 29 Copynumber: 7.8 Consensus size: 28
3805409 AGTAAATATT
* *
3805419 TGAACTTACAAGGACCAAAATAGCAAAAA
1 TGAATTTA-AAGGACTAAAATAGCAAAAA
* *
3805448 TGAAAACTTAAAGGACTAAAATGGCACAAACA
1 TG--AATTTAAAGGACTAAAATAGCA-AAA-A
* *
3805480 TAAATTTAAAAGG-CTAAAATAGCAAACA
1 TGAATTT-AAAGGACTAAAATAGCAAAAA
*
3805508 -GAAATTTAAA-GACCAAAATAGCACAAACA
1 TG-AATTTAAAGGACTAAAATAGCA-AAA-A
*
3805537 -GAAATTTAAAGGACTAAAATAGAAAAAA
1 TG-AATTTAAAGGACTAAAATAGCAAAAA
* *
3805565 TAGAGATTTAAGGGACT-AAATAGCAACAA
1 T-GA-ATTTAAAGGACTAAAATAGCAAAAA
3805594 TAGACATTTAAAGGACTAAAATAGCAAAACA
1 T-GA-ATTTAAAGGACTAAAATAGCAAAA-A
* *
3805625 TAAACTTAAAGGACTAAAATAG
1 TGAATTTAAAGGACTAAAATAG
3805647 TATTAACAGA
Statistics
Matches: 165, Mismatches: 19, Indels: 30
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 13 0.08
28 9 0.05
29 62 0.38
30 62 0.38
31 16 0.10
32 2 0.01
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (28 bp):
TGAATTTAAAGGACTAAAATAGCAAAAA
Found at i:3805469 original size:30 final size:28
Alignment explanation
Indices: 3805428--3805646 Score: 210
Period size: 30 Copynumber: 7.5 Consensus size: 28
3805418 TTGAACTTAC
* *
3805428 AAGGACCAAAATAGCAAAAATGAAAACTTA
1 AAGGACTAAAATAGCAAAAAT--AAATTTA
*
3805458 AAGGACTAAAATGGCACAAACATAAATTTAA
1 AAGGACTAAAATAGCA-AAA-ATAAATTT-A
* *
3805489 AAGG-CTAAAATAGCAAACAGAAATTTA
1 AAGGACTAAAATAGCAAAAATAAATTTA
* *
3805516 AA-GACCAAAATAGCACAAACAGAAATTTA
1 AAGGACTAAAATAGCA-AAA-ATAAATTTA
*
3805545 AAGGACTAAAATAGAAAAAATAGAGATTTA
1 AAGGACTAAAATAGCAAAAATA-A-ATTTA
* *
3805575 AGGGACT-AAATAGCAACAATAGACATTTA
1 AAGGACTAAAATAGCAAAAATA-A-ATTTA
*
3805604 AAGGACTAAAATAGCAAAACATAAACTTA
1 AAGGACTAAAATAGCAAAA-ATAAATTTA
3805633 AAGGACTAAAATAG
1 AAGGACTAAAATAG
3805647 TATTAACAGA
Statistics
Matches: 160, Mismatches: 18, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.01
27 13 0.08
28 11 0.07
29 60 0.38
30 62 0.39
31 11 0.07
32 2 0.01
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.17
Consensus pattern (28 bp):
AAGGACTAAAATAGCAAAAATAAATTTA
Found at i:3805663 original size:29 final size:29
Alignment explanation
Indices: 3805421--3805672 Score: 208
Period size: 30 Copynumber: 8.6 Consensus size: 29
3805411 TAAATATTTG
*
3805421 AACTTACAAGGACCAAAATAGCAAAA-ATGAA
1 AACTTA-AAGGACTAAAATAGCAAAACA-G-A
* *
3805452 AACTTAAAGGACTAAAATGGCACAAACATA
1 AACTTAAAGGACTAAAATAGCA-AAACAGA
*
3805482 AATTTAAAAGG-CTAAAATAGC-AAACAGA
1 AACTT-AAAGGACTAAAATAGCAAAACAGA
* *
3805510 AATTTAAA-GACCAAAATAGCACAAACAGA
1 AACTTAAAGGACTAAAATAGCA-AAACAGA
* * *
3805539 AATTTAAAGGACTAAAATAGAAAAAATAGA
1 AACTTAAAGGACTAAAATAG-CAAAACAGA
* * * *
3805569 GATTTAAGGGACT-AAATAGCAACAATAGA
1 AACTTAAAGGACTAAAATAGCAA-AACAGA
* * *
3805598 CATTTAAAGGACTAAAATAGCAAAACATA
1 AACTTAAAGGACTAAAATAGCAAAACAGA
* *
3805627 AACTTAAAGGACTAAAATAGTATTAACAGA
1 AACTTAAAGGACTAAAATAGCA-AAACAGA
* *
3805657 AACTAAAAGGGCTAAA
1 AACTTAAAGGACTAAA
3805673 CAGTAATTAC
Statistics
Matches: 186, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 12 0.06
28 13 0.07
29 61 0.33
30 83 0.45
31 15 0.08
32 1 0.01
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (29 bp):
AACTTAAAGGACTAAAATAGCAAAACAGA
Found at i:3805666 original size:59 final size:59
Alignment explanation
Indices: 3805428--3805672 Score: 225
Period size: 59 Copynumber: 4.2 Consensus size: 59
3805418 TTGAACTTAC
* * *
3805428 AAGGACCAAAATAGCAAAA-ATGAAAACTTAAAGGACTAAAATGGCACAAACATAAATTTAA
1 AAGGACTAAAATAGCAAAACAT--AAACTTAAAGGACTAAAATAGCACAAACAGAAA-TTAA
* * * *
3805489 AAGG-CTAAAATAGC-AAACAGAAATTTAAA-GACCAAAATAGCACAAACAGAAATTTA
1 AAGGACTAAAATAGCAAAACATAAACTTAAAGGACTAAAATAGCACAAACAGAAATTAA
* * * * * *
3805545 AAGGACTAAAATAG-AAAAAATAGAGATTTAAGGGACT-AAATAGCA-ACAATAGACATTTA
1 AAGGACTAAAATAGCAAAACATA-A-ACTTAAAGGACTAAAATAGCACA-AACAGAAATTAA
* ** *
3805604 AAGGACTAAAATAGCAAAACATAAACTTAAAGGACTAAAATAGTATTAACAGAAACTAA
1 AAGGACTAAAATAGCAAAACATAAACTTAAAGGACTAAAATAGCACAAACAGAAATTAA
*
3805663 AAGGGCTAAA
1 AAGGACTAAA
3805673 CAGTAATTAC
Statistics
Matches: 151, Mismatches: 23, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
56 7 0.05
57 34 0.23
58 20 0.13
59 66 0.44
60 20 0.13
61 4 0.03
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (59 bp):
AAGGACTAAAATAGCAAAACATAAACTTAAAGGACTAAAATAGCACAAACAGAAATTAA
Found at i:3806710 original size:32 final size:32
Alignment explanation
Indices: 3806673--3806796 Score: 194
Period size: 32 Copynumber: 3.9 Consensus size: 32
3806663 GAAGGACCTA
* * * *
3806673 TCCATATGTTCCAAAGAACATAGGTAACATTG
1 TCCATATGTCCCGAAGGACATAGGTAACACTG
3806705 TCCATATGTCCCGAAGGACATAGGTAACACTG
1 TCCATATGTCCCGAAGGACATAGGTAACACTG
3806737 TCCATATGTCCCGAAGGACATAGGTAACACTG
1 TCCATATGTCCCGAAGGACATAGGTAACACTG
* *
3806769 TTCATATGTCCCGAAGGACATATGTAAC
1 TCCATATGTCCCGAAGGACATAGGTAAC
3806797 CCTCGACTCT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 86 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (32 bp):
TCCATATGTCCCGAAGGACATAGGTAACACTG
Found at i:3810548 original size:21 final size:21
Alignment explanation
Indices: 3810522--3810562 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3810512 GTTGCTTAGA
*
3810522 ATCTATTAGTATCGATACTAT
1 ATCTATAAGTATCGATACTAT
3810543 ATCTATAAGTATCGATACTA
1 ATCTATAAGTATCGATACTA
3810563 CCTGCATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (21 bp):
ATCTATAAGTATCGATACTAT
Found at i:3813606 original size:36 final size:36
Alignment explanation
Indices: 3813555--3813627 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
3813545 TACATACTTC
*
3813555 ATAACATTAGGAGTTGAGGATTGAGGATCATTTGAG
1 ATAACATTAGAAGTTGAGGATTGAGGATCATTTGAG
* *
3813591 ATAACATTAGAAGTTGAGGTTTGAGGGTCATTTGAG
1 ATAACATTAGAAGTTGAGGATTGAGGATCATTTGAG
3813627 A
1 A
3813628 CAATTTCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (36 bp):
ATAACATTAGAAGTTGAGGATTGAGGATCATTTGAG
Found at i:3823377 original size:123 final size:123
Alignment explanation
Indices: 3823158--3823408 Score: 484
Period size: 123 Copynumber: 2.0 Consensus size: 123
3823148 TGAGTTGTTG
3823158 GAAGCTTTGAATTGTGAGTCACTCTCGAATCCAGTGATGGATCATCATGTGTCCATCAATGTCCC
1 GAAGCTTTGAATTGTGAGTCACTCTCGAATCCAGTGATGGATCATCATGTGTCCATCAATGTCCC
3823223 CCTACTATTGCTAATTTCATGCCATCCACCATTAATGGCATCTGATGCAAGTCTCTAA
66 CCTACTATTGCTAATTTCATGCCATCCACCATTAATGGCATCTGATGCAAGTCTCTAA
*
3823281 GAAGCTTTGAATTGTGAGTCACTCTCGTATCCAGTGATGGATCATCATGTGTCCATCAATGTCCC
1 GAAGCTTTGAATTGTGAGTCACTCTCGAATCCAGTGATGGATCATCATGTGTCCATCAATGTCCC
*
3823346 CCTACTATTGCTAATTTCATGCCATCCACCATTAATGGCATCTGATGCAAGTCTCTTA
66 CCTACTATTGCTAATTTCATGCCATCCACCATTAATGGCATCTGATGCAAGTCTCTAA
3823404 GAAGC
1 GAAGC
3823409 ATCTACTTGT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 126 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (123 bp):
GAAGCTTTGAATTGTGAGTCACTCTCGAATCCAGTGATGGATCATCATGTGTCCATCAATGTCCC
CCTACTATTGCTAATTTCATGCCATCCACCATTAATGGCATCTGATGCAAGTCTCTAA
Found at i:3823648 original size:60 final size:60
Alignment explanation
Indices: 3823548--3823684 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 60
3823538 ATTTAAGGGT
* * *
3823548 AAAG-TACACAAATGGTCCCTTGACTATAGGTTCATACTTTGTTGAATCCCCCGACTATTA
1 AAAGTTACA-AAATAGTCCCTTGACTATAGGGTCATACTTTGTTGAATCCCCCAACTATTA
* ** * * * *
3823608 AAAGTTACAAAATAGTCCTTTGACTATAGGGTGTTGCTTTGTTGAGTCTCTCAACTATTA
1 AAAGTTACAAAATAGTCCCTTGACTATAGGGTCATACTTTGTTGAATCCCCCAACTATTA
* *
3823668 AAAATTATAAAATAGTC
1 AAAGTTACAAAATAGTC
3823685 ACCGACTATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 60 0.94
61 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (60 bp):
AAAGTTACAAAATAGTCCCTTGACTATAGGGTCATACTTTGTTGAATCCCCCAACTATTA
Found at i:3824360 original size:2 final size:2
Alignment explanation
Indices: 3824353--3824408 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
3824343 TAGGCTAATA
3824353 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3824395 AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT A
3824409 ATCACCAGCA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3830190 original size:9 final size:9
Alignment explanation
Indices: 3830178--3830212 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
3830168 AAGAAATGAA
3830178 AAAGAAAAG
1 AAAGAAAAG
3830187 AAAGAAAAG
1 AAAGAAAAG
*
3830196 AAAGAAAAT
1 AAAGAAAAG
3830205 AAAGAAAA
1 AAAGAAAA
3830213 CTATTGCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (9 bp):
AAAGAAAAG
Found at i:3832502 original size:10 final size:9
Alignment explanation
Indices: 3832487--3832566 Score: 79
Period size: 10 Copynumber: 8.3 Consensus size: 9
3832477 CCGGTTTTCA
3832487 ACCGGTTCTG
1 ACCGGTT-TG
3832497 ACCGGTTTG
1 ACCGGTTTG
*
3832506 ACCGGTTTCA
1 ACCGGTTT-G
*
3832516 ACCGGTTCG
1 ACCGGTTTG
3832525 AACCGGTTTG
1 -ACCGGTTTG
*
3832535 ACCGGTCTG
1 ACCGGTTTG
3832544 AACCGGTTTG
1 -ACCGGTTTG
*
3832554 ACCCGGTCTG
1 A-CCGGTTTG
3832564 ACC
1 ACC
3832567 CGACCCGACC
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
9 21 0.36
10 38 0.64
ACGTcount: A:0.15, C:0.30, G:0.29, T:0.26
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:3832509 original size:19 final size:19
Alignment explanation
Indices: 3832486--3832564 Score: 90
Period size: 19 Copynumber: 4.1 Consensus size: 19
3832476 ACCGGTTTTC
*
3832486 AACCGGTTCTGACCGGTTTG
1 AACCGGTT-TGACCGGTCTG
*
3832506 -ACCGGTTTCAACCGGT-TCG
1 AACCGGTTT-GACCGGTCT-G
3832525 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
3832544 AACCGGTTTGACCCGGTCTG
1 AACCGGTTTGA-CCGGTCTG
3832564 A
1 A
3832565 CCCGACCCGA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
18 2 0.04
19 32 0.62
20 18 0.35
ACGTcount: A:0.16, C:0.28, G:0.29, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:3832514 original size:29 final size:29
Alignment explanation
Indices: 3832471--3832566 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
3832461 GCTGGAAACC
*
3832471 GTTTAACCGGTTTTCAACCGGTTCTGACCG
1 GTTTGACCGG-TTTCAACCGGTTCTGACCG
3832501 GTTTGACCGGTTTCAACCGGTTC-GAACCG
1 GTTTGACCGGTTTCAACCGGTTCTG-ACCG
* *
3832530 GTTTGACCGGTCTGAACCGGTT-TGACCCG
1 GTTTGACCGGTTTCAACCGGTTCTGA-CCG
*
3832559 GTCTGACC
1 GTTTGACC
3832567 CGACCCGACC
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
28 2 0.03
29 48 0.81
30 9 0.15
ACGTcount: A:0.16, C:0.28, G:0.27, T:0.29
Consensus pattern (29 bp):
GTTTGACCGGTTTCAACCGGTTCTGACCG
Found at i:3832573 original size:5 final size:5
Alignment explanation
Indices: 3832563--3832619 Score: 69
Period size: 5 Copynumber: 10.8 Consensus size: 5
3832553 GACCCGGTCT
* *
3832563 GACCC GACCC GACCGTT GACCC GACCC GACCC GACCGT GACCC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACCC GACC-C GACCC GACCC
3832611 GACCC GACC
1 GACCC GACC
3832620 GTTGACCGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
5 37 0.82
6 4 0.09
7 4 0.09
ACGTcount: A:0.19, C:0.53, G:0.23, T:0.05
Consensus pattern (5 bp):
GACCC
Found at i:3832605 original size:21 final size:22
Alignment explanation
Indices: 3832563--3832626 Score: 121
Period size: 21 Copynumber: 3.0 Consensus size: 22
3832553 GACCCGGTCT
3832563 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
3832585 GACCCGACCCGACCG-TGACCC
1 GACCCGACCCGACCGTTGACCC
3832606 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
3832627 GTTGACCGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 21 0.51
22 20 0.49
ACGTcount: A:0.19, C:0.50, G:0.23, T:0.08
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:3832628 original size:7 final size:7
Alignment explanation
Indices: 3832616--3832647 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
3832606 GACCCGACCC
3832616 GACCGTT
1 GACCGTT
3832623 GACCGTT
1 GACCGTT
3832630 GACCGTT
1 GACCGTT
3832637 GAACCGTT
1 G-ACCGTT
3832645 GAC
1 GAC
3832648 TTTCTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (7 bp):
GACCGTT
Found at i:3832644 original size:15 final size:14
Alignment explanation
Indices: 3832616--3832647 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
3832606 GACCCGACCC
3832616 GACCGTTGACCGTT
1 GACCGTTGACCGTT
3832630 GACCGTTGAACCGTT
1 GACCGTTG-ACCGTT
3832645 GAC
1 GAC
3832648 TTTCTTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (14 bp):
GACCGTTGACCGTT
Done.