Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3838456
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 18
Found at i:637695 original size:22 final size:22
Alignment explanation
Indices: 637657--637698 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
637647 TCTTAGTATT
*
637657 GGATTAAATGGTAATTATGGAA
1 GGATTAAAGGGTAATTATGGAA
637679 GGATTGAAAGGGT-ATTATGG
1 GGATT-AAAGGGTAATTATGG
637699 TCTTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.31
Consensus pattern (22 bp):
GGATTAAAGGGTAATTATGGAA
Found at i:638054 original size:31 final size:31
Alignment explanation
Indices: 638019--638089 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
638009 GACTAGGTAA
* *
638019 TTATGTGA-ATGTGCATGATATGTACTATATG
1 TTATGTGATATGTACATGATATATA-TATATG
* *
638050 TTATGTGATATGTATATGTTATATATATATG
1 TTATGTGATATGTACATGATATATATATATG
*
638081 TTATATGAT
1 TTATGTGAT
638090 GATGATCTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 22 0.65
32 12 0.35
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (31 bp):
TTATGTGATATGTACATGATATATATATATG
Found at i:638073 original size:13 final size:13
Alignment explanation
Indices: 638044--638087 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
638034 TGATATGTAC
638044 TATATGT-TATGT
1 TATATGTATATGT
*
638056 GATATGTATATGT
1 TATATGTATATGT
*
638069 TATATATATATGT
1 TATATGTATATGT
638082 TATATG
1 TATATG
638088 ATGATGATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
12 6 0.22
13 21 0.78
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TATATGTATATGT
Found at i:641552 original size:23 final size:23
Alignment explanation
Indices: 641517--641573 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
641507 ATCAAGTACA
*
641517 ATAATATATTAAGTAGCGCTTAT
1 ATAATATAATAAGTAGCGCTTAT
*
641540 ATAATGTAATAAGTAGCGCTTAT
1 ATAATATAATAAGTAGCGCTTAT
*
641563 ATAATAAAATA
1 ATAATATAATA
641574 GGCATTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (23 bp):
ATAATATAATAAGTAGCGCTTAT
Found at i:641635 original size:87 final size:87
Alignment explanation
Indices: 641489--641651 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 87
641479 TATGTTATAT
* *
641489 CATTTAATCGAAAATATTATCAAGTACAATAATATATTAAGTAGCGCTTATATAATGTAATAAGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAAGTAGCGCTTATATAATGTAATAAGT
641554 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
641576 CATTTAACCGAAAATATTATTAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAAGTAGCGCTTATATAATGTAATAAGT
*
641641 AGCGTTTATAT
66 AGCGCTTATAT
641652 TGACCTATTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAAGTAGCGCTTATATAATGTAATAAGT
AGCGCTTATATAATAAAATAGG
Found at i:642110 original size:199 final size:197
Alignment explanation
Indices: 641657--642169 Score: 642
Period size: 199 Copynumber: 2.6 Consensus size: 197
641647 TATATTGACC
* * *
641657 TATTTTCTAACTATACCGGTATATTTATACCGGTAACATTGTAAATTTACCTATTACATTATAAT
1 TATTTTCTAATTA-ACCGGTATATTTATACCGGTTACATTGTAAATTTATCTATTACATTATAAT
* *
641722 TATGAGTTTCGATGTTTTTGGGATCGATACAATTT--TAAATGTATTGACACTTTATTCGTGCAC
65 TATG-GTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATTCGTGCAC
*
641785 CTCGTTGGACATTCATTCTGGAAAAAAGTATCAACACAAACTTAAAAAGTGTCGATACATTATGT
128 CTCGTTGGACATTCATTCTGGAAAAAAGTATCAACACAAACTTAAAAAGTGTCAATACATTATGT
*
641850 AGACT
193 AGACA
* * * * *
641855 TATTTTCTCATAAAACTGGTATATTTCTACCGGGTACATTGTAAATTT-TCCTATTACATTATAA
1 TATTTTCTAAT-TAACCGGTATATTTATACCGGTTACATTGTAAATTTAT-CTATTACATTATAA
*
641919 TTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGT-GTGCG
64 TTAT-GGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTAT-TCGTGCA
* * * ** * * *
641983 CCTCGTTGGGCATTCATTCTTGACAATAAGTATTGACACAGA-TTCCACAAGTGTCAATACATTA
127 CCTCGTTGGACATTCATTCTGGA-AAAAAGTATCAACACAAACTT-AAAAAGTGTCAATACATTA
* *
642047 TGTTGCCA
190 TGTAGACA
* *
642055 TGTTTTCTAATTAACCGGTATATTTATACCGGTTACATTGTTAATTTATCTATTACATTATAATT
1 TATTTTCTAATTAACCGGTATATTTATACCGGTTACATTGTAAATTTATCTATTACATTATAATT
* *
642120 ATTGGTTTTGATGTTTTTGGGGTCGATACTTTTAGA-AAATGTATCGACAC
66 A-TGGTTTCGATGTTTTTGGGATCGATACTTTTA-ATAAATGTATCGACAC
642170 ATATGTTTAT
Statistics
Matches: 272, Mismatches: 32, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
197 3 0.01
198 82 0.30
199 139 0.51
200 48 0.18
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (197 bp):
TATTTTCTAATTAACCGGTATATTTATACCGGTTACATTGTAAATTTATCTATTACATTATAATT
ATGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATTCGTGCACCTC
GTTGGACATTCATTCTGGAAAAAAGTATCAACACAAACTTAAAAAGTGTCAATACATTATGTAGA
CA
Found at i:642726 original size:182 final size:181
Alignment explanation
Indices: 642419--643012 Score: 865
Period size: 182 Copynumber: 3.3 Consensus size: 181
642409 CAAAACTCCG
* * *
642419 GTTTTGTAATATTTTTACATGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
642484 TTATAGGCAG-TATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
66 TTATAGGC-GCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
* **
642548 GACACTTTCAATATATCCGGTAGCGTTTTACCCCTTTTGTCATTTCGAGACC
130 GACACTTTCAACATATCCGGTAGCGTTTTACCAGTTTTGTCATTTCGAGACC
* *
642600 AGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAATACATTTTTATAAAGTAACGACAC
1 -GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
*
642665 TTTATAGGCGCTATAACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
65 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
* * * *
642730 GGCACTTTCAACATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACC
130 GACACTTTCAACATATCCGGTAGCGTTTTACCAGTTTTGTCATTTCGAGACC
* *
642782 GATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAATTATCGACAC
1 G-TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
* **
642847 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAATAGTGTCGATACTTAT-TTCAATCTAA
65 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATT-AAAGT-A
* * * * * *
642911 TCGATACTTTCAACATATCCGATATCGTTTTACCAGTTTTGTAATAAT-GAAACC
128 TCGACACTTTCAACATATCCGGTAGCGTTTTACCAGTTTTGTCAT-TTCGAGACC
*
642965 GGTTTTGTCATA-TTTTAACT-TTATATTGTTATGGATCGATACATTTTT
1 -GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
643013 TATTTGTATC
Statistics
Matches: 375, Mismatches: 31, Indels: 13
0.89 0.07 0.03
Matches are distributed among these distances:
181 32 0.09
182 288 0.77
183 53 0.14
184 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (181 bp):
GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATCG
ACACTTTCAACATATCCGGTAGCGTTTTACCAGTTTTGTCATTTCGAGACC
Found at i:643952 original size:29 final size:29
Alignment explanation
Indices: 643914--643975 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
643904 TAAAATTATC
*
643914 TTTTAATTTTGTTTTAACTTATTAAATAT
1 TTTTAATTTTGTCTTAACTTATTAAATAT
* *
643943 TTTTATTTTTGTCTTAATTTATTAAATAT
1 TTTTAATTTTGTCTTAACTTATTAAATAT
643972 TTTT
1 TTTT
643976 TTATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (29 bp):
TTTTAATTTTGTCTTAACTTATTAAATAT
Found at i:644125 original size:28 final size:30
Alignment explanation
Indices: 644062--644126 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
644052 AAATATATTT
* * *
644062 AAATATTTTATTATTAATTTAATATAAAAC
1 AAATATTTTACTATTAATTAAAAATAAAAC
* *
644092 ATATATTTTACTCTT-ATTAAAAATAAAA-
1 AAATATTTTACTATTAATTAAAAATAAAAC
644120 AAATATT
1 AAATATT
644127 ATTATTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
28 6 0.21
29 11 0.38
30 12 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (30 bp):
AAATATTTTACTATTAATTAAAAATAAAAC
Found at i:644187 original size:23 final size:23
Alignment explanation
Indices: 644161--644204 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
644151 TTTTAAAATA
* *
644161 TCTTAACTTAAATTGTATTTTAT
1 TCTTAACTTAAAATATATTTTAT
*
644184 TCTTAAGTTAAAATATATTTT
1 TCTTAACTTAAAATATATTTT
644205 GAAGTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.55
Consensus pattern (23 bp):
TCTTAACTTAAAATATATTTTAT
Found at i:644202 original size:18 final size:18
Alignment explanation
Indices: 644188--644220 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
644178 TTTTATTCTT
644188 AAGTTAAAATATATTTTG
1 AAGTTAAAATATATTTTG
644206 AAGTT--AATATATTTT
1 AAGTTAAAATATATTTT
644221 AATATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (18 bp):
AAGTTAAAATATATTTTG
Found at i:644274 original size:29 final size:29
Alignment explanation
Indices: 644221--644317 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
644211 AATATATTTT
* *
644221 AATATATTTTTAAAAGTTAAGATAATAATAA
1 AATATATTTTT--AAGTTAAAATAAAAATAA
*
644252 AATATATTTTTAATTTAAAATAAAAATAA
1 AATATATTTTTAAGTTAAAATAAAAATAA
* * *
644281 AATATATTTTTAAGTGAAGATAAGAATAA
1 AATATATTTTTAAGTTAAAATAAAAATAA
*
644310 TATA-ATTT
1 AATATATTT
644318 GTATTTTACT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
28 4 0.07
29 43 0.74
31 11 0.19
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (29 bp):
AATATATTTTTAAGTTAAAATAAAAATAA
Found at i:647000 original size:2 final size:2
Alignment explanation
Indices: 646993--647025 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
646983 CCCTATAAAT
646993 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
647026 GGCTGCGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:647550 original size:2 final size:2
Alignment explanation
Indices: 647543--647584 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
647533 GTGTAATTTA
*
647543 CT CT CT CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
647585 ATATATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:651578 original size:119 final size:117
Alignment explanation
Indices: 651397--651854 Score: 440
Period size: 119 Copynumber: 3.8 Consensus size: 117
651387 CTTAAACGAG
* * * ** * *
651397 TTCTTATTGTGAACTTTTTCTCCCTCTTTGGATGAGTTCTTTTCATTATGAACCTTTCCATTGGA
1 TTCTCATTATGAACTTCTTCTCCCTCTTCAGAAGAGTTCTTATCATTATGAACC-TTCCATTGGA
* * * * *
651462 AACGTTGATCCACCTCCTTCTACGATGGATTTGAGGAAAATGTCGATCAAGTTC
65 AATGTTGATCCACCTCCTTCTATGATAGATTTGAGCAAAA-GTCGAACAAGTTC
* * *
651516 TTCTCATTATGAACTTCTTCTTCCTTTTCAGACA-AGTTCTTATAATTATGAACTCTTCCATTGG
1 TTCTCATTATGAACTTCTTCTCCCTCTTCAGA-AGAGTTCTTATCATTATGAAC-CTTCCATTGG
* * * *
651580 AAATGTCGATCCACCTCCTTCTGTAATAGATTTGAACAAAAGGTCGAACAAGTTC
64 AAATGTTGATCCACCTCCTTCTATGATAGATTTGAGCAAAA-GTCGAACAAGTTC
* *
651635 TTCTCATTATGAACTTCTTCTCCCTCTTCAGAAGAGTTTTTCTCATTATGAACCACCCTT-CATT
1 TTCTCATTATGAACTTCTTCTCCCTCTTCAGAAGAGTTCTTATCATTATG-A--A-CCTTCCATT
** * * *
651699 GGAAATAATG-TTCACCTCTTTCTATGATAGATTTGAGTAAAAGATCGAACAAGTTC
62 GGAAATGTTGATCCACCTCCTTCTATGATAGATTTGAGCAAAAG-TCGAACAAGTTC
** * * *
651755 TTCTCATTATGAACTTCTTCTCTTTCTTC-GAGCGAGTTCTTCTCATTATGAACCCTTTCATTAG
1 TTCTCATTATGAACTTCTTCTCCCTCTTCAGA-AGAGTTCTTATCATTATGAA-CCTTCCATT-G
* ** * *
651819 G-AATGATGATCCATATCATTCTGTGATAGATTTGAG
63 GAAATGTTGATCCACCTCCTTCTATGATAGATTTGAG
651855 TGAATTAATC
Statistics
Matches: 283, Mismatches: 44, Indels: 24
0.81 0.13 0.07
Matches are distributed among these distances:
117 6 0.02
118 11 0.04
119 167 0.59
120 83 0.29
121 11 0.04
122 4 0.01
123 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (117 bp):
TTCTCATTATGAACTTCTTCTCCCTCTTCAGAAGAGTTCTTATCATTATGAACCTTCCATTGGAA
ATGTTGATCCACCTCCTTCTATGATAGATTTGAGCAAAAGTCGAACAAGTTC
Found at i:652979 original size:11 final size:11
Alignment explanation
Indices: 652963--653020 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
652953 GTATTTTTCT
652963 TTTTTTTCTTC
1 TTTTTTTCTTC
652974 TTTTTTT-TTC
1 TTTTTTTCTTC
652984 --TTTTTCATT-
1 TTTTTTTC-TTC
652993 TTTCATTTTCTTC
1 TTT--TTTTCTTC
*
653006 TATTTTTCTTC
1 TTTTTTTCTTC
653017 TTTT
1 TTTT
653021 AAGTGTGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
8 5 0.13
10 5 0.13
11 19 0.50
12 2 0.05
13 7 0.18
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTTCTTC
Found at i:652987 original size:19 final size:19
Alignment explanation
Indices: 652956--653020 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 19
652946 TATTTTTGTA
*
652956 TTTTTCTTT-TTTTTCTTC
1 TTTTTTTTTCTTTTTCTTC
652974 TTTTTTTTTCTTTTTCATT-
1 TTTTTTTTTCTTTTTC-TTC
652993 TTTCATTTTCTTCTATTTTTCTTC
1 TTT--TTTT-TTC--TTTTTCTTC
653017 TTTT
1 TTTT
653021 AAGTGTGGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
18 8 0.21
19 9 0.24
20 2 0.05
21 4 0.11
22 4 0.11
23 2 0.05
24 9 0.24
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTTTCTTTTTCTTC
Found at i:652996 original size:13 final size:11
Alignment explanation
Indices: 652956--652988 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
652946 TATTTTTGTA
652956 TTTTTCTTTTT
1 TTTTTCTTTTT
652967 TTTCTTC-TTTT
1 TTT-TTCTTTTT
652978 TTTTTCTTTTT
1 TTTTTCTTTTT
652989 CATTTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.15
11 14 0.70
12 3 0.15
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:655618 original size:21 final size:21
Alignment explanation
Indices: 655577--655618 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
655567 CCTAAAACAC
*
655577 TCTCACTTCTCACTTCTCTCT
1 TCTCACTTCTCACTGCTCTCT
*
655598 TCTCTCTTCTCATCTGC-CTCT
1 TCTCACTTCTCA-CTGCTCTCT
655619 ACCCCTCCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.07, C:0.43, G:0.02, T:0.48
Consensus pattern (21 bp):
TCTCACTTCTCACTGCTCTCT
Found at i:656549 original size:3 final size:3
Alignment explanation
Indices: 656537--656577 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
656527 ACATTTGTAT
656537 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA -AA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
656578 TTTTTGTAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 6 0.17
3 29 0.83
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:667062 original size:140 final size:138
Alignment explanation
Indices: 666737--667391 Score: 651
Period size: 140 Copynumber: 4.8 Consensus size: 138
666727 AATATAGCTT
* * * ** * *
666737 TAATATTAATCCAAATCATTTTTAAT-GAATTA-TTGGGTCAAATAGTTAAAATGGAACCTCGAG
1 TAATATTAATCCTAATTAATTTTAATCG-ATTATTTGATTCAAATAATTAAAATGGAACCTCGAC
* * * *
666800 CAAAAGTGAGGACCAAA-TAAAAATTCTCCTAAATTAAATGACGAAGTTTGAAATTAAACTTAAA
65 CAAAAGCGAGGACCAAATTAAAAATTCACCTAAATTAAATGACTAAATTTGAAATTAAAC-TAAA
666864 ATG-AGGATC
129 ATGAAGGATC
* * * *
666873 TAAATATTAA-CCT-ATTCAATTTTAACCAATTATTTGATTCGAATAATTAAAATAGAACCTCGA
1 T-AATATTAATCCTAATT-AATTTTAATCGATTATTTGATTCAAATAATTAAAATGGAACCTCGA
* ** * *
666936 CCAAAAGCGAGGACCAAATTAAGAATTCTTCTCAACTAAAATGACTAAATTTGAAATTAAACCTA
64 CCAAAAGCGAGGACCAAATTAAAAATTCACCT-AAATTAAATGACTAAATTTGAAATTAAA-CTA
* *
667001 AAGTGAAGGCTC
127 AAATGAAGGATC
* * * **
667013 TAATATTAATCCTAATTAATTTTAATCGATTATATGTTTCGAATAATTAAAATGGAACCTCGAGA
1 TAATATTAATCCTAATTAATTTTAATCGATTATTTGATTCAAATAATTAAAATGGAACCTCGACC
* * * *
667078 AAAAGCGAGGACTAAATTAAAAATTCACCTAAATTTAAGGACT-AA---G---TT--A--GAAAT
66 AAAAGCGAGGACCAAATTAAAAATTCACCTAAATTAAATGACTAAATTTGAAATTAAACTAAAAT
667132 GAAGGATC
131 GAAGGATC
* ** * *
667140 TAATATTAATCCTAATTAATTTTAGTTAATTATGTGATTCAAATAATTAAAATGGAACCTCGGGC
1 TAATATTAATCCTAATTAATTTTAATCGATTATTTGATTCAAATAATTAAAATGGAACCTC-GAC
* * * * * *
667205 AAAAAACGAGGACCAAATTAAAAATTGACCTAAATTTAATGACTAAGTTAGAAATTAAGACTAAA
65 CAAAAGCGAGGACCAAATTAAAAATTCACCTAAATTAAATGACTAAATTTGAAATTAA-ACTAAA
* **
667270 ATAAAGGCCC
129 ATGAAGGATC
* *
667280 TAATATTAATCCTAATTAATTTTAATTGATTATTTGATTCAAATAATTAAAATGGAACCTCGAAC
1 TAATATTAATCCTAATTAATTTTAATCGATTATTTGATTCAAATAATTAAAATGGAACCTCGACC
* * * * *
667345 AAAAGCAAGAACCAAATTTAAAATTCACCTAAATTTAAGGACTAAAT
66 AAAAGCGAGGACCAAATTAAAAATTCACCTAAATTAAATGACTAAAT
667392 CCAAAGAAAA
Statistics
Matches: 428, Mismatches: 68, Indels: 43
0.79 0.13 0.08
Matches are distributed among these distances:
127 65 0.15
128 41 0.10
129 1 0.00
130 1 0.00
132 3 0.01
135 5 0.01
136 14 0.03
137 49 0.11
138 14 0.03
139 88 0.21
140 144 0.34
141 3 0.01
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (138 bp):
TAATATTAATCCTAATTAATTTTAATCGATTATTTGATTCAAATAATTAAAATGGAACCTCGACC
AAAAGCGAGGACCAAATTAAAAATTCACCTAAATTAAATGACTAAATTTGAAATTAAACTAAAAT
GAAGGATC
Found at i:667155 original size:127 final size:128
Alignment explanation
Indices: 667004--667389 Score: 488
Period size: 127 Copynumber: 2.9 Consensus size: 128
666994 AAACCTAAAG
* * *
667004 TGAAGGCTCTAATATTAATCCTAATTAATTTTAATCGATTATATGTTTCGAATAATTAAAATGGA
1 TGAAGGCTCTAATATTAATCCTAATTAATTTTAATTGATTATATGATTCAAATAATTAAAATGGA
*
667069 ACCTCGAGAAAAAGCGAGGACTAAATTAAAAATTCACCTAAATTTAAGGACTAAGTTAGAAA-
66 ACCTCGAGAAAAAGCGAGGACCAAATTAAAAATTCACCTAAATTTAAGGACTAAGTTAGAAAT
* * * *
667131 TGAAGGATCTAATATTAATCCTAATTAATTTTAGTTAATTATGTGATTCAAATAATTAAAATGGA
1 TGAAGGCTCTAATATTAATCCTAATTAATTTTAATTGATTATATGATTCAAATAATTAAAATGGA
* * * *
667196 ACCTCGGGCAAAAAACGAGGACCAAATTAAAAATTGACCTAAATTTAATGACTAAGTTAGAAAT
66 ACCTCGAG-AAAAAGCGAGGACCAAATTAAAAATTCACCTAAATTTAAGGACTAAGTTAGAAAT
* *
667260 TAAGACTAAAATAAAGGCCCTAATATTAATCCTAATTAATTTTAATTGATTATTTGATTCAAATA
1 T--G---------AAGGCTCTAATATTAATCCTAATTAATTTTAATTGATTATATGATTCAAATA
* * *
667325 ATTAAAATGGAACCTCGA-ACAAAAGCAAGAACCAAATTTAAAATTCACCTAAATTTAAGGACTA
55 ATTAAAATGGAACCTCGAGA-AAAAGCGAGGACCAAATTAAAAATTCACCTAAATTTAAGGACTA
667389 A
119 A
667390 ATCCAAAGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
127 65 0.29
128 50 0.23
129 1 0.00
131 1 0.00
138 1 0.00
139 39 0.18
140 64 0.29
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (128 bp):
TGAAGGCTCTAATATTAATCCTAATTAATTTTAATTGATTATATGATTCAAATAATTAAAATGGA
ACCTCGAGAAAAAGCGAGGACCAAATTAAAAATTCACCTAAATTTAAGGACTAAGTTAGAAAT
Found at i:667200 original size:267 final size:266
Alignment explanation
Indices: 666862--667389 Score: 706
Period size: 267 Copynumber: 2.0 Consensus size: 266
666852 ATTAAACTTA
* *
666862 AAATGAGGATCTAAATATTAACCTATTCAATTTTAACCAATTATTTGATTCGAATAATTAAAATA
1 AAATGAGGATCTAAATATTAACCTATTCAATTTTAACCAATTATGTGATTCAAATAATTAAAATA
* * * ** * *
666927 GAACCTC-GACCAAAAGCGAGGACCAAATTAAGAATTCTTCTCAACTAAAATGACTAAATTTGAA
66 GAACCTCGGACAAAAAACGAGGACCAAATTAAAAATTCACCT-AAATAAAATGACTAAATTAGAA
* * * * *
666991 ATTAA-ACCTAAAGTGAAGGCTCTAATATTAATCCTAATTAATTTTAATCGATTATATGTTTCGA
130 ATTAAGA-CTAAAATAAAGGCCCTAATATTAATCCTAATTAATTTTAATCGATTATATGATTCAA
* * *
667055 ATAATTAAAATGGAACCTCGAGA-AAAAGCGAGGACTAAATTAAAAATTCACCTAAATTTAAGGA
194 ATAATTAAAATGGAACCTCGA-ACAAAAGCAAGAACCAAATTAAAAATTCACCTAAATTTAAGGA
667119 CTAAGTTAG
258 CTAAGTTAG
***
667128 AAATGAAGGATCT-AATATTAATCCTAATT-AATTTTAGTTAATTATGTGATTCAAATAATTAAA
1 AAATG-AGGATCTAAATATTAA-CCT-ATTCAATTTTAACCAATTATGTGATTCAAATAATTAAA
* * * ** *
667191 ATGGAACCTCGGGCAAAAAACGAGGACCAAATTAAAAATTGACCTAAATTTAATGACTAAGTTAG
63 ATAGAACCTCGGACAAAAAACGAGGACCAAATTAAAAATTCACCTAAATAAAATGACTAAATTAG
* *
667256 AAATTAAGACTAAAATAAAGGCCCTAATATTAATCCTAATTAATTTTAATTGATTATTTGATTCA
128 AAATTAAGACTAAAATAAAGGCCCTAATATTAATCCTAATTAATTTTAATCGATTATATGATTCA
*
667321 AATAATTAAAATGGAACCTCGAACAAAAGCAAGAACCAAATTTAAAATTCACCTAAATTTAAGGA
193 AATAATTAAAATGGAACCTCGAACAAAAGCAAGAACCAAATTAAAAATTCACCTAAATTTAAGGA
667386 CTAA
258 CTAA
667390 ATCCAAAGAA
Statistics
Matches: 227, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
266 14 0.06
267 182 0.80
268 31 0.14
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (266 bp):
AAATGAGGATCTAAATATTAACCTATTCAATTTTAACCAATTATGTGATTCAAATAATTAAAATA
GAACCTCGGACAAAAAACGAGGACCAAATTAAAAATTCACCTAAATAAAATGACTAAATTAGAAA
TTAAGACTAAAATAAAGGCCCTAATATTAATCCTAATTAATTTTAATCGATTATATGATTCAAAT
AATTAAAATGGAACCTCGAACAAAAGCAAGAACCAAATTAAAAATTCACCTAAATTTAAGGACTA
AGTTAG
Found at i:667628 original size:7 final size:7
Alignment explanation
Indices: 667618--667642 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
667608 AAACAAAATA
667618 CAAAGTC
1 CAAAGTC
667625 CAAAGTC
1 CAAAGTC
667632 CAAAGTC
1 CAAAGTC
667639 CAAA
1 CAAA
667643 CAGCAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.28, G:0.12, T:0.12
Consensus pattern (7 bp):
CAAAGTC
Found at i:668065 original size:137 final size:137
Alignment explanation
Indices: 667809--668106 Score: 490
Period size: 137 Copynumber: 2.2 Consensus size: 137
667799 TATTACACGT
667809 ACCATAAATAA-ACGAATCATACCTTAGGACGGGTCATCACGAGGTCGTAGAATGATTCGAATAT
1 ACCATAAATAACACGAATCATACCTTAGGACGGGTCATCACGAGGTCGTAGAATGATTCGAATAT
* * *
667873 ATTTTATAAGTTAGATGTTAGGAGTTAGTCAATTAGTAAGTTAGCGGTTTTAAAAATTACAATTT
66 ATTTTATAAGTTAGATGTTAGGAGTTAGTAAATTAGTAAGTTAGCGATTTAAAAAATTACAATTT
667938 TACCCAA
131 TACCCAA
*
667945 ACCATAAATAACACGAATCATACCTTAGGACGGGTCATCATGAGGTCGTAGAATGATTCGAATAT
1 ACCATAAATAACACGAATCATACCTTAGGACGGGTCATCACGAGGTCGTAGAATGATTCGAATAT
* *
668010 ATTTTATAAGTTAGATGTTAGGAGTTAGTAAATTTGTAAGTTAGCGATTTAAAAAATTAGAATTT
66 ATTTTATAAGTTAGATGTTAGGAGTTAGTAAATTAGTAAGTTAGCGATTTAAAAAATTACAATTT
***
668075 TACCTGG
131 TACCCAA
* *
668082 ACCTTAAATAACACAAATCATACCT
1 ACCATAAATAACACGAATCATACCT
668107 CAAGGCCGAT
Statistics
Matches: 150, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
136 11 0.07
137 139 0.93
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (137 bp):
ACCATAAATAACACGAATCATACCTTAGGACGGGTCATCACGAGGTCGTAGAATGATTCGAATAT
ATTTTATAAGTTAGATGTTAGGAGTTAGTAAATTAGTAAGTTAGCGATTTAAAAAATTACAATTT
TACCCAA
Found at i:669386 original size:18 final size:19
Alignment explanation
Indices: 669356--669391 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
669346 TTCTAAAATA
669356 CAAAAGAGGTACCGATACC
1 CAAAAGAGGTACCGATACC
669375 CAAAAG-GGTACCGATAC
1 CAAAAGAGGTACCGATAC
669392 TACTTTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.25, G:0.22, T:0.11
Consensus pattern (19 bp):
CAAAAGAGGTACCGATACC
Found at i:670229 original size:74 final size:73
Alignment explanation
Indices: 670144--670339 Score: 198
Period size: 74 Copynumber: 2.6 Consensus size: 73
670134 TTTTACTCAA
* * * * * * * *
670144 AATTAATAATATTTTATATATA-TTAAATTTTAAATTTTTTTAACTTATTAAATATATATTTTAT
1 AATTAAAAATATTTTATAAATATTTAAATTTGAAATATATTTAA-ATAATAAA-AAATATTTTAT
670208 CTTTACCATC
64 CTTTACCATC
* *
670218 AATTAAAAATATTTGTTTAAATATTTTAATTTGAAATATATTTAAATAATAAAAAATATTTTATC
1 AATTAAAAATATTT-TATAAATATTTAAATTTGAAATATATTTAAATAATAAAAAATATTTTATC
*
670283 TTTATCATC
65 TTTACCATC
* * * *
670292 ACTTAAAAATATTTTTTTAAATATCTT-AACTTAAAATATATTTAAATA
1 AATTAAAAATA-TTTTATAAATAT-TTAAATTTGAAATATATTTAAATA
670340 TTTTATTATT
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
74 70 0.67
75 17 0.16
76 17 0.16
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (73 bp):
AATTAAAAATATTTTATAAATATTTAAATTTGAAATATATTTAAATAATAAAAAATATTTTATCT
TTACCATC
Found at i:670771 original size:22 final size:24
Alignment explanation
Indices: 670728--670776 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
670718 ATAGATGAGT
670728 TATAATAAAAATTATATATTAATA
1 TATAATAAAAATTATATATTAATA
* *
670752 TATAATATAAA-TAT-TTTTAATA
1 TATAATAAAAATTATATATTAATA
670774 TAT
1 TAT
670777 TAAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 3 0.13
24 10 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TATAATAAAAATTATATATTAATA
Found at i:670782 original size:19 final size:21
Alignment explanation
Indices: 670746--670794 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
670736 AAATTATATA
670746 TTAATATATAATATAAATATTT
1 TTAATATAT-ATATAAATATTT
670768 TTAATATAT-TA-AAATATTT
1 TTAATATATATATAAATATTT
*
670787 GT-ATATAT
1 TTAATATAT
670795 GATTTATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 6 0.23
19 9 0.35
20 2 0.08
22 9 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAATATATATATAAATATTT
Found at i:670794 original size:20 final size:21
Alignment explanation
Indices: 670749--670794 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
670739 TTATATATTA
*
670749 ATATATAATATAAATATTTTT
1 ATATATAATATAAATATTTGT
*
670770 A-ATATATTA-AAATATTTGT
1 ATATATAATATAAATATTTGT
670789 ATATAT
1 ATATAT
670795 GATTTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 10 0.45
20 11 0.50
21 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATATATAATATAAATATTTGT
Found at i:671280 original size:5 final size:5
Alignment explanation
Indices: 671270--671482 Score: 392
Period size: 5 Copynumber: 42.8 Consensus size: 5
671260 ATTTCTTTTA
671270 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
671320 TATAT TATAT TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
671369 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
671419 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATTT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* *
671469 TATTT TATTT TATA
1 TATAT TATAT TATA
671483 AATAATATTT
Statistics
Matches: 205, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
4 4 0.02
5 201 0.98
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:673219 original size:29 final size:29
Alignment explanation
Indices: 673187--673242 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
673177 TTATTTCAAG
*
673187 TTAACTACTAAATTTCATTTAATTGCATA
1 TTAACCACTAAATTTCATTTAATTGCATA
* * *
673216 TTAACCACTAACTTTTATTTTATTGCA
1 TTAACCACTAAATTTCATTTAATTGCA
673243 CTCTAACCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.04, T:0.46
Consensus pattern (29 bp):
TTAACCACTAAATTTCATTTAATTGCATA
Found at i:673930 original size:22 final size:24
Alignment explanation
Indices: 673895--673938 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
673885 GCTATCTTGT
673895 ATTTTGATCTTTATGTTATTTATG
1 ATTTTGATCTTTATGTTATTTATG
*
673919 ATTTT-AT-TTTATTTTATTTA
1 ATTTTGATCTTTATGTTATTTA
673939 AGCACTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (24 bp):
ATTTTGATCTTTATGTTATTTATG
Found at i:673935 original size:18 final size:18
Alignment explanation
Indices: 673894--673932 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
673884 TGCTATCTTG
673894 TATTT-TGATCTTTATGT
1 TATTTATGATCTTTATGT
*
673911 TATTTATGAT-TTTATTT
1 TATTTATGATCTTTATGT
673928 TATTT
1 TATTT
673933 TATTTAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (18 bp):
TATTTATGATCTTTATGT
Found at i:675368 original size:65 final size:63
Alignment explanation
Indices: 675241--675395 Score: 165
Period size: 65 Copynumber: 2.4 Consensus size: 63
675231 ACACCCTAAT
* * *
675241 TCGAATGTTTTTTGTGTACCGATGCACACTATGCATCGATGAACTCCTGATTTTATTAAAACA
1 TCGAATGTATTTTATGTACCGATGCACAATATGCATCGATGAACTCCTGATTTTATTAAAACA
* *
675304 TCGAAAGTATTTTATGTACCGATGCACAGATAATGCATCGAT-ACACTCCTG-TCTCTT-TTGAA
1 TCGAATGTATTTTATGTACCGATGCACA-AT-ATGCATCGATGA-ACTCCTGAT-T-TTATTAAA
675366 ACA
61 ACA
* *
675369 TCGAATGTA-ATTAGTGTACCAATGCAC
1 TCGAATGTATTTTA-TGTACCGATGCAC
675396 CCCAAGTGTA
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
63 25 0.32
64 6 0.08
65 45 0.58
66 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (63 bp):
TCGAATGTATTTTATGTACCGATGCACAATATGCATCGATGAACTCCTGATTTTATTAAAACA
Found at i:680814 original size:23 final size:23
Alignment explanation
Indices: 680788--680858 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
680778 GAAAGTGTAC
680788 CGATGCATTCCTTGAATATGCAT
1 CGATGCATTCCTTGAATATGCAT
* ** *
680811 CGATACA---CTATGAAGGTGCAC
1 CGATGCATTCCT-TGAATATGCAT
680832 CGATGCATTCCTTGAATATGCAT
1 CGATGCATTCCTTGAATATGCAT
680855 CGAT
1 CGAT
680859 ACACTATGCA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
20 2 0.06
21 14 0.39
23 18 0.50
24 2 0.06
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (23 bp):
CGATGCATTCCTTGAATATGCAT
Found at i:680834 original size:44 final size:44
Alignment explanation
Indices: 680762--680866 Score: 183
Period size: 44 Copynumber: 2.4 Consensus size: 44
680752 TTGTACACTG
* *
680762 TGCATTGATACACTATGAAAGTGTACCGATGCATTCCTTGAATA
1 TGCATCGATACACTATGAAAGTGCACCGATGCATTCCTTGAATA
*
680806 TGCATCGATACACTATGAAGGTGCACCGATGCATTCCTTGAATA
1 TGCATCGATACACTATGAAAGTGCACCGATGCATTCCTTGAATA
680850 TGCATCGATACACTATG
1 TGCATCGATACACTATG
680867 CAGTGTACCG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
TGCATCGATACACTATGAAAGTGCACCGATGCATTCCTTGAATA
Found at i:686876 original size:13 final size:12
Alignment explanation
Indices: 686860--686947 Score: 76
Period size: 12 Copynumber: 7.2 Consensus size: 12
686850 AGAGATATAG
686860 AAAAAAGAAGAA
1 AAAAAAGAAGAA
*
686872 GAAAAAA-AATAA
1 -AAAAAAGAAGAA
686884 AAGAAAAGAGAGAA
1 AA-AAAAGA-AGAA
*
686898 AAGAAAGAAGACA
1 AAAAAAGAAGA-A
686911 AAAAAAG-AGAA
1 AAAAAAGAAGAA
*
686922 AAAATAAAAAG-A
1 AAAA-AAGAAGAA
686934 AAAAAAG-AGAA
1 AAAAAAGAAGAA
686945 AAA
1 AAA
686948 TAAAACAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
10 2 0.03
11 13 0.21
12 21 0.34
13 21 0.34
14 5 0.08
ACGTcount: A:0.80, C:0.01, G:0.17, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAGAA
Found at i:686879 original size:14 final size:13
Alignment explanation
Indices: 686860--686944 Score: 70
Period size: 13 Copynumber: 6.7 Consensus size: 13
686850 AGAGATATAG
*
686860 AAAAAAGAAGAAG
1 AAAAAAGAAGAAA
*
686873 AAAAAA-AATAAA
1 AAAAAAGAAGAAA
*
686885 AGAAAAG-AGAGAA
1 AAAAAAGAAGA-AA
* *
686898 AAGAAAGAAGACA
1 AAAAAAGAAGAAA
686911 AAAAAAG-AGAAA
1 AAAAAAGAAGAAA
686923 AAATAAA-AAGAAA
1 AAA-AAAGAAGAAA
*
686936 AAAAGAGAA
1 AAAAAAGAA
686945 AAATAAAACA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
12 20 0.36
13 33 0.59
14 3 0.05
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAGAAA
Found at i:686913 original size:23 final size:24
Alignment explanation
Indices: 686860--686952 Score: 93
Period size: 26 Copynumber: 3.8 Consensus size: 24
686850 AGAGATATAG
* *
686860 AAAAAAGAAGAAGAAA-AAAAATAA
1 AAAAAAG-AGAAAAAATAAAAAGAA
* *
686884 AAGAAAAGAGAGAAAAGAAAGAAGACA
1 AA-AAAAGAGAAAAAATAAA-AAGA-A
686911 AAAAAAGAGAAAAAATAAAAAG-A
1 AAAAAAGAGAAAAAATAAAAAGAA
686934 AAAAAAGAG-AAAAATAAAA
1 AAAAAAGAGAAAAAATAAAA
686953 CAAATAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
22 10 0.17
23 10 0.17
24 8 0.13
25 11 0.18
26 18 0.30
27 3 0.05
ACGTcount: A:0.80, C:0.01, G:0.16, T:0.03
Consensus pattern (24 bp):
AAAAAAGAGAAAAAATAAAAAGAA
Found at i:686952 original size:13 final size:12
Alignment explanation
Indices: 686838--686952 Score: 74
Period size: 12 Copynumber: 9.1 Consensus size: 12
686828 AACAACATAG
*
686838 AGAGAAAAAAGA
1 AGAGAAAAAAAA
686850 AGAGATATAGAAAAA
1 AGAGA-A-A-AAAAA
686865 AGAAGAAGAAAAAA
1 AG-AGAA-AAAAAA
* *
686879 A-ATAAAAGAAA
1 AGAGAAAAAAAA
*
686890 AGAGAGAAAAGAA
1 AGAGA-AAAAAAA
*
686903 AGAAGACAAAAAA
1 AG-AGAAAAAAAA
686916 AGAGAAAAAATAA
1 AGAGAAAAAA-AA
*
686929 A-A-AGAAAAAA
1 AGAGAAAAAAAA
686939 AGAGAAAAATAAA
1 AGAGAAAAA-AAA
686952 A
1 A
686953 CAAATAAAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 21
0.71 0.11 0.19
Matches are distributed among these distances:
10 3 0.04
11 12 0.15
12 22 0.28
13 22 0.28
14 10 0.12
15 8 0.10
16 3 0.04
ACGTcount: A:0.77, C:0.01, G:0.18, T:0.04
Consensus pattern (12 bp):
AGAGAAAAAAAA
Found at i:686961 original size:22 final size:22
Alignment explanation
Indices: 686870--686961 Score: 82
Period size: 21 Copynumber: 4.1 Consensus size: 22
686860 AAAAAAGAAG
* *
686870 AAGAAAAAAAATAAAA-GAAAA
1 AAGAGAAAAAATAAAACAAAAA
*
686891 GAGAGAAAAGAA-AGAAGACAAAAA
1 AAGAGAAAA-AATA-AA-ACAAAAA
*
686915 AAGAGAAAAAATAAAAAGAAAAA
1 AAGAGAAAAAAT-AAAACAAAAA
686938 AAGAG-AAAAATAAAACAAATAA
1 AAGAGAAAAAATAAAACAAA-AA
686960 AA
1 AA
686962 AATACTTCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
21 15 0.26
22 14 0.24
23 14 0.24
24 14 0.24
25 1 0.02
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.04
Consensus pattern (22 bp):
AAGAGAAAAAATAAAACAAAAA
Found at i:686962 original size:23 final size:23
Alignment explanation
Indices: 686870--686952 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
686860 AAAAAAGAAG
*
686870 AAGAAAAAAAAT-AAAAG-AAAA
1 AAGAGAAAAAATAAAAAGAAAAA
* * *
686891 GAGAGAAAAGAA-AGAAGACAAAAA
1 AAGAGAAAA-AATA-AAAAGAAAAA
686915 AAGAGAAAAAATAAAAAGAAAAA
1 AAGAGAAAAAATAAAAAGAAAAA
686938 AAGAG-AAAAATAAAA
1 AAGAGAAAAAATAAAA
686953 CAAATAAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
21 7 0.14
22 12 0.24
23 18 0.36
24 13 0.26
ACGTcount: A:0.80, C:0.01, G:0.16, T:0.04
Consensus pattern (23 bp):
AAGAGAAAAAATAAAAAGAAAAA
Found at i:686962 original size:47 final size:45
Alignment explanation
Indices: 686861--686963 Score: 102
Period size: 47 Copynumber: 2.2 Consensus size: 45
686851 GAGATATAGA
* *
686861 AAAAAGAAGAAGAAAAAAAATAAAAGAAAAGAGAGAAAAGAAAGAAG
1 AAAAA-AA-AAGAAAAAAAATAAAAGAAAAAAGAGAAAAGAAAGAAC
* *
686908 ACAAAAAAAGAGAAAAAATAAAAAGAAAAAAAGAGAAAA-ATAA-AAC
1 AAAAAAAAAGAAAAAAAAT-AAAAG-AAAAAAGAGAAAAGA-AAGAAC
686954 AAATAAAAAA
1 AAA-AAAAAA
686964 TACTTCAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
45 11 0.23
46 12 0.26
47 24 0.51
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.04
Consensus pattern (45 bp):
AAAAAAAAAGAAAAAAAATAAAAGAAAAAAGAGAAAAGAAAGAAC
Found at i:687746 original size:28 final size:28
Alignment explanation
Indices: 687705--687763 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
687695 AGCCAACCGG
** * *
687705 AACACATTGTCTCCCTAAATTGACCTGA
1 AACACATTACCTCCCAAAATTAACCTGA
*
687733 AACACATTACCTCCCAAAATTAATCTGA
1 AACACATTACCTCCCAAAATTAACCTGA
687761 AAC
1 AAC
687764 GCTCTACTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.29, G:0.07, T:0.25
Consensus pattern (28 bp):
AACACATTACCTCCCAAAATTAACCTGA
Found at i:690503 original size:18 final size:18
Alignment explanation
Indices: 690477--690512 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
690467 TCGAAAGGAC
*
690477 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
690495 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
690513 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:691673 original size:24 final size:24
Alignment explanation
Indices: 691646--691722 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
691636 TTCTGATACA
691646 TGATCTGAATTCTGTTATGATTTT
1 TGATCTGAATTCTGTTATGATTTT
* *
691670 TGATCT-AGATTCTGTTCTGATATT
1 TGATCTGA-ATTCTGTTATGATTTT
* * * *
691694 TGTTCTGAATTATTTTTTGATTTT
1 TGATCTGAATTCTGTTATGATTTT
691718 CTGAT
1 -TGAT
691723 ATCTTCGTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 1 0.02
24 37 0.88
25 4 0.10
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.56
Consensus pattern (24 bp):
TGATCTGAATTCTGTTATGATTTT
Found at i:695525 original size:18 final size:17
Alignment explanation
Indices: 695499--695556 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
695489 TCGAAATGAC
695499 TGAAGTAAATGATAAGAT
1 TGAA-TAAATGATAAGAT
*
695517 TGAATTAAATAATAAGAT
1 TGAA-TAAATGATAAGAT
* * *
695535 CGGATAGAATGAAAAGAT
1 TGAATA-AATGATAAGAT
695553 TGAA
1 TGAA
695557 ATACCGTAGA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
17 2 0.06
18 29 0.94
ACGTcount: A:0.52, C:0.02, G:0.21, T:0.26
Consensus pattern (17 bp):
TGAATAAATGATAAGAT
Found at i:696049 original size:24 final size:24
Alignment explanation
Indices: 695995--696077 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 24
695985 ATTTCCTACT
* * * *
695995 TGAATTTTGTTCTGATACATGACC
1 TGAATTCTGTTATGATATATGATC
* *
696019 TGAATTCTGTTATGATTTCTGATC
1 TGAATTCTGTTATGATATATGATC
* * *
696043 TGGATTCTGTTCTGATATATGTTC
1 TGAATTCTGTTATGATATATGATC
696067 TGAATTCTGTT
1 TGAATTCTGTT
696078 TTAATTTTTT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.48
Consensus pattern (24 bp):
TGAATTCTGTTATGATATATGATC
Found at i:696077 original size:12 final size:12
Alignment explanation
Indices: 696018--696077 Score: 59
Period size: 12 Copynumber: 5.0 Consensus size: 12
696008 GATACATGAC
696018 CTGAATTCTGTT
1 CTGAATTCTGTT
* * *
696030 ATGATTTCTGAT
1 CTGAATTCTGTT
*
696042 CTGGATTCTGTT
1 CTGAATTCTGTT
*
696054 CTG-ATATATGTT
1 CTGAAT-TCTGTT
696066 CTGAATTCTGTT
1 CTGAATTCTGTT
696078 TTAATTTTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
11 2 0.05
12 33 0.89
13 2 0.05
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.50
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:700440 original size:18 final size:17
Alignment explanation
Indices: 700414--700471 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
700404 TCGAAATGAC
700414 TGAAGTAAATGATAAGAT
1 TGAA-TAAATGATAAGAT
*
700432 TGAATTAAATAATAAGAT
1 TGAA-TAAATGATAAGAT
* * *
700450 CGGATAGAATGAAAAGAT
1 TGAATA-AATGATAAGAT
700468 TGAA
1 TGAA
700472 ATACCGTAGA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
17 2 0.06
18 29 0.94
ACGTcount: A:0.52, C:0.02, G:0.21, T:0.26
Consensus pattern (17 bp):
TGAATAAATGATAAGAT
Found at i:702850 original size:55 final size:55
Alignment explanation
Indices: 702746--703377 Score: 619
Period size: 55 Copynumber: 11.6 Consensus size: 55
702736 TTTTTTTAGG
* * * *
702746 AACTAAGTCTGATTTTCAGAGGTTTCCTGACATGATATTTTCTTAAATGAGTTTTTAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGAC--G--ATTTTC--AAATGAGCTTTCAAAGA
* *
702807 AACTAAGTCTTATTTTCAGAAGTTTCTTGACGATTTTCAAATGAACTTTCAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * * * *
702862 AACTAAGTCTAATTTTCAGAA-TTTCTTGACGATCTTCCAATGAGTTTTTAAACA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * * * *
702916 AACTAAGTCTGATTTTCAGAAGTTTCTTAATGATTTTTAAACGAGCATTCAAATA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * * *
702971 AACTAAGTCTACATTTT-AGAAGTTTATTGATGATTTTTAAATGAGCTTTCAAAAA
1 AACTAAGTCT-GATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * *
703026 AACTAAGT-TGATTTTCATAAGTTTCTCGACGATTTTTTCAAATGAGTTTTCAAATA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGA--TTTTCAAATGAGCTTTCAAAGA
* * *
703082 AACTAAGTTTGATTTTTAGAAGTTTCTTGATGATTTAT-AAATGAGCTTTCAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTT-TCAAATGAGCTTTCAAAGA
* * * * *
703137 ATCTAAGTCTGATTTTAAGAACTTTCTTGATGATTTTTAAATGAGCTTTCAAAGA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * * * *
703192 AACTAAGTATGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTTAAATA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
703247 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAG--TT------
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* * * * * *
703294 --CTAAGTCTGATTTTTAGAAGTTTCTTGATGATTTTTAAACGAGCTTTTAAAAA
1 AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
* *
703347 AACTAACTCT-ATTTTTCAGAGGTTTCTTGAC
1 AACTAAGTCTGA-TTTTCAGAAGTTTCTTGAC
703378 ATGATTAATT
Statistics
Matches: 486, Mismatches: 66, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
45 39 0.08
47 2 0.00
53 7 0.01
54 62 0.13
55 288 0.59
56 33 0.07
57 26 0.05
59 1 0.00
61 28 0.06
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (55 bp):
AACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGCTTTCAAAGA
Found at i:703172 original size:221 final size:219
Alignment explanation
Indices: 702788--703293 Score: 685
Period size: 221 Copynumber: 2.3 Consensus size: 219
702778 TGATATTTTC
* * **
702788 TTAAATGAGTTTTTAAAGAAACTAAGTCTTATTTTCAGAAGTTTCTTGACGATTTTCAAATGAAC
1 TTAAATGAGTTTTTAAAAAAACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
* * *
702853 TTTCAAAGAAACTAAGTCTAATTTTCAGAATTTCTTGACGATCTTCCAATGAGTTTTTAAACAAA
66 TTTCAAAGAAACTAAGTCTAATTTTCAGAATTTCTTGACGATCTTCAAATGAGCTTTCAAACAAA
* * * *
702918 CTAAGTCTGATTTTCAGAAGTTTCTTAATGATTTTTAAACGAGCATTCAAATAAACTAAGTCTAC
131 CTAAGTCTGATTTTAAGAACTTTCTTAATGATTTTTAAACGAGCATTCAAAGAAACTAAGTAT-C
702983 ATTTT-AGAAGTTTATTGATGATTT
195 ATTTTCAGAAGTTTATTGATGATTT
* * * *
703007 TTAAATGAGCTTTCAAAAAAACTAAGT-TGATTTTCATAAGTTTCTCGACGATTTTTTCAAATGA
1 TTAAATGAGTTTTTAAAAAAACTAAGTCTGATTTTCAGAAGTTTCTTGACGA--TTTTCAAATGA
* * * * * *
703071 GTTTTCAAATAAACTAAGTTTGATTTTTAGAAGTTTCTTGATGAT-TTATAAATGAGCTTTCAAA
64 GTTTTCAAAGAAACTAAGTCTAATTTTCAGAA-TTTCTTGACGATCTT-CAAATGAGCTTTCAAA
* * * * *
703135 GAATCTAAGTCTGATTTTAAGAACTTTCTTGATGATTTTTAAATGAGCTTTCAAAGAAACTAAGT
127 CAAACTAAGTCTGATTTTAAGAACTTTCTTAATGATTTTTAAACGAGCATTCAAAGAAACTAAGT
* *
703200 ATGATTTTCAGAAGTTTCTTGATGATTT
192 ATCATTTTCAGAAGTTTATTGATGATTT
*
703228 TTAAATGAGTTTTTAAATAAACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
1 TTAAATGAGTTTTTAAAAAAACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
703293 T
66 T
703294 CTAAGTCTGA
Statistics
Matches: 248, Mismatches: 33, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
218 21 0.08
219 24 0.10
220 58 0.23
221 123 0.50
222 22 0.09
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (219 bp):
TTAAATGAGTTTTTAAAAAAACTAAGTCTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
TTTCAAAGAAACTAAGTCTAATTTTCAGAATTTCTTGACGATCTTCAAATGAGCTTTCAAACAAA
CTAAGTCTGATTTTAAGAACTTTCTTAATGATTTTTAAACGAGCATTCAAAGAAACTAAGTATCA
TTTTCAGAAGTTTATTGATGATTT
Found at i:703372 original size:100 final size:100
Alignment explanation
Indices: 703194--703377 Score: 289
Period size: 100 Copynumber: 1.8 Consensus size: 100
703184 TTCAAAGAAA
* * * *
703194 CTAAGTATGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGTTTTTAAATAAACTAAGTCTGA
1 CTAAGTATGATTTTCAGAAGTTTCTTGATGATTTTTAAACGAGCTTTTAAAAAAACTAACTCTGA
703259 TTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTT
66 TTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTT
* *
703294 CTAAGTCTGATTTTTAGAAGTTTCTTGATGATTTTTAAACGAGCTTTTAAAAAAACTAACTCT-A
1 CTAAGTATGATTTTCAGAAGTTTCTTGATGATTTTTAAACGAGCTTTTAAAAAAACTAACTCTGA
*
703358 TTTTTCAGAGGTTTCTTGAC
66 -TTTTCAGAAGTTTCTTGAC
703378 ATGATTAATT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 1 0.01
100 75 0.99
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (100 bp):
CTAAGTATGATTTTCAGAAGTTTCTTGATGATTTTTAAACGAGCTTTTAAAAAAACTAACTCTGA
TTTTCAGAAGTTTCTTGACGATTTTCAAATGAGTT
Found at i:703542 original size:57 final size:56
Alignment explanation
Indices: 703385--703542 Score: 199
Period size: 56 Copynumber: 2.8 Consensus size: 56
703375 GACATGATTA
* * * * *
703385 ATTTTTAAAAAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATGAGTATTTCCAATT
1 ATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGATTACTTCCAAAT
* * * *
703441 AATTTTAAAGAAACTAAGCCTGATTTTCAGAGGTTTCTTGATGATTACTTCTAAAT
1 ATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGATTACTTCCAAAT
* * *
703497 ATTTTTTAAAGAAGTTAAGCCTAATTTTTAGGGGTTTCTTGATGAT
1 A-TTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGAT
703543 AACTGTAAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
56 48 0.56
57 38 0.44
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (56 bp):
ATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGATTACTTCCAAAT
Found at i:703788 original size:61 final size:60
Alignment explanation
Indices: 703715--703843 Score: 179
Period size: 61 Copynumber: 2.1 Consensus size: 60
703705 TGTTTTCACA
* *
703715 TGATTTTCGAAAAATGAGAAAGT-AATTTCCAAGGTTTCTCATTTAAATCTTTTCTAAAAAT
1 TGATTTTTGAAAAATGAGAAA-TCAATTTCCAAAGTTTCTCA-TTAAATCTTTTCTAAAAAT
* * *
703776 TGATTTTTGAAAAATGAGAAATCGATTTCCAAAGTTTCTGATTAAATCTTTTCTAAAAGT
1 TGATTTTTGAAAAATGAGAAATCAATTTCCAAAGTTTCTCATTAAATCTTTTCTAAAAAT
*
703836 TGGTTTTT
1 TGATTTTT
703844 CTTGATGAGT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
60 26 0.43
61 35 0.57
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (60 bp):
TGATTTTTGAAAAATGAGAAATCAATTTCCAAAGTTTCTCATTAAATCTTTTCTAAAAAT
Found at i:705040 original size:139 final size:139
Alignment explanation
Indices: 704840--705228 Score: 607
Period size: 139 Copynumber: 2.8 Consensus size: 139
704830 AGAATGAGGT
* * * * * * * * *
704840 GGATCATCATTTCCAATGAAAGAGTTCATAATAAGAATAACTCATCCAAAGAAGGATAAGAAGTT
1 GGATCAACATTTCCAGTG-GAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTT
* * *
704905 CATAATGAGAAGAGCTTGTTCAACCTTAGCTTGATTCATCATATATGGAGTTGAATCAGCAACAC
65 CATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACAC
704970 CTCACTCGAG
130 CTCACTCGAG
704980 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTC
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTC
* * * *
705045 ATAATGATAAGAAATTGTCCAGCCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACC
66 ATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACC
705110 TCACTCGAG
131 TCACTCGAG
705119 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTC
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTC
*
705184 ATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTTCATCACATA
66 ATAATGAGAAGAACTTGTTCAACCTTAGCTCG-ATTCATCACATA
705229 AGAAGTTGGA
Statistics
Matches: 227, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
139 200 0.88
140 27 0.12
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (139 bp):
GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTC
ATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACC
TCACTCGAG
Found at i:708744 original size:18 final size:19
Alignment explanation
Indices: 708721--708777 Score: 89
Period size: 18 Copynumber: 2.9 Consensus size: 19
708711 TATATTTTCC
708721 AACAATTGGTATCTTTTT-
1 AACAATTGGTATCTTTTTA
708739 AACAATTGGTATCCTTTTGTA
1 AACAATTGGTAT-CTTTT-TA
708760 AACAATTGGTATCTTTTT
1 AACAATTGGTATCTTTTT
708778 CAATTTCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.33
19 6 0.17
20 6 0.17
21 12 0.33
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (19 bp):
AACAATTGGTATCTTTTTA
Found at i:709144 original size:20 final size:20
Alignment explanation
Indices: 709076--709150 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
709066 AATGAAAAGA
* *
709076 AGTATCGATACTACTTCATGT
1 AGTATCGATAC-CCATCATGT
*
709097 AGTATCGATACCACATGAATG-
1 AGTATCGATACC-CAT-CATGT
*
709118 GGTATCGATACCCATCATGT
1 AGTATCGATACCCATCATGT
*
709138 TGTATCGATACCC
1 AGTATCGATACCC
709151 TAGGCAAGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 3 0.07
20 15 0.33
21 24 0.53
22 3 0.07
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (20 bp):
AGTATCGATACCCATCATGT
Found at i:709185 original size:20 final size:21
Alignment explanation
Indices: 709095--709185 Score: 73
Period size: 20 Copynumber: 4.3 Consensus size: 21
709085 ACTACTTCAT
*
709095 GTAGTATCGATACCACATGAATG
1 GTAGTATCGATACC-CATCAA-G
*
709118 G--GTATCGATACCCATC-AT
1 GTAGTATCGATACCCATCAAG
* *
709136 GTTGTATCGATACCCTAGGCAAG
1 GTAGTATCGATACCC-A-TCAAG
709159 AGTAGTATCGATA-CCATCAAG
1 -GTAGTATCGATACCCATCAAG
709180 GTAGTA
1 GTAGTA
709186 CCAATACTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 21 0.38
21 16 0.29
22 2 0.04
23 4 0.07
24 11 0.20
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (21 bp):
GTAGTATCGATACCCATCAAG
Found at i:709247 original size:19 final size:19
Alignment explanation
Indices: 709223--709259 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
709213 TCGAATGCAA
*
709223 AAAGGGTACCGATACCATG
1 AAAGGGTACCAATACCATG
*
709242 AAAGGGTATCAATACCAT
1 AAAGGGTACCAATACCAT
709260 AGTGAAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (19 bp):
AAAGGGTACCAATACCATG
Found at i:711086 original size:12 final size:12
Alignment explanation
Indices: 711051--711082 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
711041 AACTCCTAAC
711051 TATTTT-TTATT
1 TATTTTATTATT
711062 TATTTTATTATT
1 TATTTTATTATT
711074 T-TTTTATTA
1 TATTTTATTA
711083 ATTTGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TATTTTATTATT
Found at i:720490 original size:13 final size:13
Alignment explanation
Indices: 720458--720506 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
720448 TGAAAATTGA
*
720458 TAATAATCAATAATT
1 TAATAATAAAT-A-T
720473 TAATAATAAATAT
1 TAATAATAAATAT
720486 TAATAATAAATAT
1 TAATAATAAATAT
720499 TAAATAAT
1 T-AATAAT
720507 TGATTATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 15 0.47
14 7 0.22
15 10 0.31
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAATAAATAT
Found at i:721366 original size:20 final size:20
Alignment explanation
Indices: 721338--721376 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
721328 CTATACATTT
721338 TTAAAAAATATATTATAATA
1 TTAAAAAATATATTATAATA
* * *
721358 TTAATAAATGTATTTTAAT
1 TTAAAAAATATATTATAAT
721377 TAATTTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TTAAAAAATATATTATAATA
Found at i:726662 original size:31 final size:32
Alignment explanation
Indices: 726615--726677 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
726605 TTATTTCTAA
726615 TTTATATATTTTTATTTATAAAATCTAAATTC
1 TTTATATATTTTTATTTATAAAATCTAAATTC
726647 TTTATATA-TTTTATTTATAAAATCTAAATTC
1 TTTATATATTTTTATTTATAAAATCTAAATTC
726678 ATAGAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 23 0.74
32 8 0.26
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (32 bp):
TTTATATATTTTTATTTATAAAATCTAAATTC
Found at i:730386 original size:4 final size:4
Alignment explanation
Indices: 730377--730431 Score: 74
Period size: 4 Copynumber: 13.8 Consensus size: 4
730367 TCATGTAATC
* * * *
730377 TGTA TGTA TGTA TGTA TGCA TGTA TGCA TGCA TGTA TGCA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
730425 TGTA TGT
1 TGTA TGT
730432 GTGTGTGTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.24, C:0.07, G:0.25, T:0.44
Consensus pattern (4 bp):
TGTA
Found at i:730436 original size:2 final size:2
Alignment explanation
Indices: 730429--730816 Score: 583
Period size: 2 Copynumber: 197.5 Consensus size: 2
730419 TATGTATGTA
730429 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
730471 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
730513 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
730554 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
730595 TG TG TG TG TG TG TG TG TG TG TG GG T- TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
730636 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
730677 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
730718 TG TG TG TG T- TG TG T- TG TA TG TG TG TA TG TA TG TA TA TG TA
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
730758 TG TA TG TA TG TA TG TA TG TA TG TC TG TA TG TG TG TG TG TA TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
730800 TA TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG T
730817 AGAAGCTGAG
Statistics
Matches: 349, Mismatches: 30, Indels: 14
0.89 0.08 0.04
Matches are distributed among these distances:
1 7 0.02
2 342 0.98
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (2 bp):
TG
Found at i:732649 original size:31 final size:30
Alignment explanation
Indices: 732605--732662 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
732595 TGATGATTTT
732605 GAAAAACAAAATAGTT-GAGTGACTAAAACA
1 GAAAAACAAAATAGTTGGA-TGACTAAAACA
*
732635 GAAACACAAGAATAGTTGGATGACTAAA
1 GAAAAACAA-AATAGTTGGATGACTAAA
732663 TATGTAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 8 0.32
31 15 0.60
32 2 0.08
ACGTcount: A:0.53, C:0.10, G:0.19, T:0.17
Consensus pattern (30 bp):
GAAAAACAAAATAGTTGGATGACTAAAACA
Found at i:735666 original size:2 final size:2
Alignment explanation
Indices: 735661--735695 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
735651 ATAACCACTT
735661 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
735696 GATCTATCGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:737146 original size:43 final size:42
Alignment explanation
Indices: 737083--737233 Score: 166
Period size: 42 Copynumber: 3.5 Consensus size: 42
737073 TGTGTCACAT
* *
737083 TAATTGAGATCCCTATTTTTTGTAATCCCACTTTTTAACTTTA
1 TAATTGAGATCCCTAATTTTT-TAATCACACTTTTTAACTTTA
737126 TAATTGAGA-CCCTTAATTTTTTCAATCACA-TTTTTATA-TTTA
1 TAATTGAGATCCC-TAATTTTTT-AATCACACTTTTTA-ACTTTA
* * *
737168 TGATTGAGA-CCCTTAATTTTTTTTAATCTCACTTTTTACCTTTA
1 TAATTGAGATCCC-TAA--TTTTTTAATCACACTTTTTAACTTTA
737212 TAATTGAGATCCCTAATTTTTT
1 TAATTGAGATCCCTAATTTTTT
737234 TTAATATCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 17
0.80 0.05 0.15
Matches are distributed among these distances:
42 35 0.37
43 29 0.31
44 27 0.29
45 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (42 bp):
TAATTGAGATCCCTAATTTTTTAATCACACTTTTTAACTTTA
Found at i:737174 original size:42 final size:42
Alignment explanation
Indices: 737083--737319 Score: 157
Period size: 44 Copynumber: 5.6 Consensus size: 42
737073 TGTGTCACAT
* *
737083 TAATTGAGATCCC-T-ATTTTTTGTAATCCCACTTTTTAACTTTA
1 TAATTGAGA-CCCTTAATTTTTT-CAATCACACTTTTTAA-TTTA
737126 TAATTGAGACCCTTAATTTTTTCAATCACA-TTTTTATATTTA
1 TAATTGAGACCCTTAATTTTTTCAATCACACTTTTTA-ATTTA
* * * *
737168 TGATTGAGACCCTTAATTTTTTTTAATCTCACTTTTTACCTTTA
1 TAATTGAGACCCTTAA-TTTTTTCAATCACACTTTTTA-ATTTA
* *
737212 TAATTGAGATCCC-TAATTTTTTTTAAT-ATCACTTTTT-GTTT-
1 TAATTGAGA-CCCTTAA-TTTTTTCAATCA-CACTTTTTAATTTA
* * * * * *
737253 TTATTGA-AGCCTCTAATTTTTACAATCTCACATTTTACCTTTA
1 TAATTGAGACCCT-TAATTTTTTCAATCACACTTTTTA-ATTTA
* * * *
737296 TAACTAAGACTCATAATTTTTTCA
1 TAATTGAGACCCTTAATTTTTTCA
737320 GTTTTATAAA
Statistics
Matches: 156, Mismatches: 24, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
39 2 0.01
40 16 0.10
41 9 0.06
42 34 0.22
43 43 0.28
44 49 0.31
45 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (42 bp):
TAATTGAGACCCTTAATTTTTTCAATCACACTTTTTAATTTA
Found at i:737256 original size:44 final size:44
Alignment explanation
Indices: 737083--737248 Score: 182
Period size: 44 Copynumber: 3.8 Consensus size: 44
737073 TGTGTCACAT
* ** *
737083 TAATTGAGATCCC-T-ATTTTTTGTAATCCCACTTTTTAACTTTA
1 TAATTGAGA-CCCTTAATTTTTTTTAATATCACTTTTTATCTTTA
* *
737126 TAATTGAGACCCTTAA--TTTTTTCA-ATCACATTTTTATATTTA
1 TAATTGAGACCCTTAATTTTTTTTAATATCAC-TTTTTATCTTTA
* * *
737168 TGATTGAGACCCTTAATTTTTTTTAATCTCACTTTTTACCTTTA
1 TAATTGAGACCCTTAATTTTTTTTAATATCACTTTTTATCTTTA
737212 TAATTGAGATCCC-TAATTTTTTTTAATATCACTTTTT
1 TAATTGAGA-CCCTTAATTTTTTTTAATATCACTTTTT
737249 GTTTTTATTG
Statistics
Matches: 103, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
41 3 0.03
42 34 0.33
43 10 0.10
44 49 0.48
45 7 0.07
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (44 bp):
TAATTGAGACCCTTAATTTTTTTTAATATCACTTTTTATCTTTA
Found at i:749007 original size:20 final size:20
Alignment explanation
Indices: 748969--749008 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
748959 AAAAAATTCA
*
748969 AAAAAATATATGTTTTTATT
1 AAAAAATATATGTTATTATT
748989 AAAAAATAGTAT-TTATTATT
1 AAAAAATA-TATGTTATTATT
749009 TGGTCTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
AAAAAATATATGTTATTATT
Found at i:751433 original size:27 final size:27
Alignment explanation
Indices: 751394--751503 Score: 109
Period size: 27 Copynumber: 4.0 Consensus size: 27
751384 AAAATTTATT
751394 TTTCTCCTCTTAAAATTTTATAAGTTCA
1 TTTCT-CTCTTAAAATTTTATAAGTTCA
*
751422 TTTCTCTCTTAAAATTTTATAAGTTTA
1 TTTCTCTCTTAAAATTTTATAAGTTCA
* *
751449 TATATC-CT-TTAAAATTTTATAAATTTA
1 T-T-TCTCTCTTAAAATTTTATAAGTTCA
* * *
751476 TATATC-CTTCAAAATTTTATAATTTCA
1 TTTCTCTCTT-AAAATTTTATAAGTTCA
751503 T
1 T
751504 CATTCTAACA
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 57 0.80
28 8 0.11
29 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.02, T:0.52
Consensus pattern (27 bp):
TTTCTCTCTTAAAATTTTATAAGTTCA
Found at i:751967 original size:2 final size:2
Alignment explanation
Indices: 751962--751991 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
751952 AATGTGTGTG
751962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
751992 ATAAGTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:755073 original size:21 final size:21
Alignment explanation
Indices: 755049--755092 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
755039 CATCAAGTCA
* * *
755049 ACCAAATCAGCAAGCAAGAAG
1 ACCAAATCAACAAGAAACAAG
755070 ACCAAATCAACAAGAAACAAG
1 ACCAAATCAACAAGAAACAAG
755091 AC
1 AC
755093 TAAACACGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.25, G:0.14, T:0.05
Consensus pattern (21 bp):
ACCAAATCAACAAGAAACAAG
Found at i:757007 original size:132 final size:131
Alignment explanation
Indices: 756778--757107 Score: 447
Period size: 132 Copynumber: 2.5 Consensus size: 131
756768 TTAAATTTTG
*
756778 GTTGGAGTAATAAATGAATGCTTTAAGGCATGAGAGG----TT-TTCTCGATGGGAAATAATTAG
1 GTTGGAGTAATAAATGAATGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAG
** * * * *
756838 ATATTATTGTTTTTCTCTCGAATCAATATTGATTTTTAAGA-CAAAGTAGTGATATCTTTTCATT
66 ATATTACCGCTTTGCTCTCGAATCAATATTGAATTTTAAGATCAAA-TAGTGATATCTCTTCATT
756902 TC
130 TC
*
756904 AGTTGGAGTAATAAATGAATGCTTTAAGGCATAAGAGGTCATTTATTCTCGATTGGAAATAATTA
1 -GTTGGAGTAATAAATGAATGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTA
* * * *
756969 TATATTACCGCTTTGCTCTCGAATTAATATTGAATTTTAAGATGAAATAGTGATATCTCTTCCTT
65 GATATTACCGCTTTGCTCTCGAATCAATATTGAATTTTAAGATCAAATAGTGATATCTCTTCATT
757034 TC
130 TC
* * * *
757036 GATTGGAGTAATAATTGACTGCTTTAAGGCATGAGAGTTCATTTATTCTCGATTGAAAATAATTA
1 G-TTGGAGTAATAAATGAATGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTA
757101 GATATTA
65 GATATTA
757108 TCGTTTTGGT
Statistics
Matches: 178, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
127 36 0.20
131 3 0.02
132 136 0.76
133 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (131 bp):
GTTGGAGTAATAAATGAATGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAG
ATATTACCGCTTTGCTCTCGAATCAATATTGAATTTTAAGATCAAATAGTGATATCTCTTCATTT
C
Found at i:759399 original size:11 final size:11
Alignment explanation
Indices: 759367--759401 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
759357 ACACCTTGTA
*
759367 TTGCATTTACA
1 TTGCATTTACT
*
759378 TTGCATCTACT
1 TTGCATTTACT
759389 TTGCATTTACT
1 TTGCATTTACT
759400 TT
1 TT
759402 TCACCTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.51
Consensus pattern (11 bp):
TTGCATTTACT
Found at i:764832 original size:6 final size:6
Alignment explanation
Indices: 764817--764884 Score: 81
Period size: 6 Copynumber: 11.7 Consensus size: 6
764807 TCGCCTGAAG
*
764817 AAAA-A AAAAGA AAAAGA AAAA-A AGAAA-A AAATG- AAAAGA AAAAGAA
1 AAAAGA AAAAGA AAAAGA AAAAGA A-AAAGA AAAAGA AAAAGA AAAAG-A
764863 AAAAGA AAAAGA AAAAGA AAAA
1 AAAAGA AAAAGA AAAAGA AAAA
764885 AGAATAAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
5 12 0.21
6 38 0.68
7 6 0.11
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.01
Consensus pattern (6 bp):
AAAAGA
Found at i:764888 original size:13 final size:13
Alignment explanation
Indices: 764820--764884 Score: 89
Period size: 14 Copynumber: 4.9 Consensus size: 13
764810 CCTGAAGAAA
764820 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
764833 AAAAAAAGAAAAA-
1 -AAAAAAGAAAAAG
764846 AATGAAAAGAAAAAG
1 AA--AAAAGAAAAAG
764861 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
764874 -AAAAAGAAAAA
1 AAAAAAGAAAAA
764885 AGAATAAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.27
13 11 0.23
14 22 0.46
15 2 0.04
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:764897 original size:19 final size:17
Alignment explanation
Indices: 764814--764898 Score: 93
Period size: 19 Copynumber: 4.8 Consensus size: 17
764804 ACTTCGCCTG
764814 AAGAAAAAAAAAG-AAA
1 AAGAAAAAAAAAGAAAA
764830 AAGAAAAAAAGAA-AAAA
1 AAGAAAAAAA-AAGAAAA
*
764847 ATGAAAAGAAAAAGAAAA
1 AAGAAAA-AAAAAGAAAA
764865 AAGAAAAAGAAAAAGAAAA
1 AAG-AAAA-AAAAAGAAAA
764884 AAGAATAAATAAAAG
1 AAGAA-AAA-AAAAG
764899 GGGGTTCAAG
Statistics
Matches: 60, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
16 10 0.17
17 13 0.22
18 12 0.20
19 25 0.42
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (17 bp):
AAGAAAAAAAAAGAAAA
Found at i:766127 original size:46 final size:47
Alignment explanation
Indices: 766074--766259 Score: 119
Period size: 46 Copynumber: 4.2 Consensus size: 47
766064 CCGAATAAAT
766074 AGTGGAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTG-AGTAGC
1 AGTGGAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAAGTAGC
* * * *
766120 AGTGGAACA-A----GTCTGTCTC-GA--TAATCTTCCCTGAAG-AAC
1 AGTGGAACAGATCCCCTCTTTC-CAGATTTGATCTTCCCTGAAGTAGC
* ** * * * *
766159 AGTGGAA-TGAATCAAC-GTTTCCAGATCTGATTTTCCCTGAAGAAGC
1 AGTGGAACAG-ATCCCCTCTTTCCAGATTTGATCTTCCCTGAAGTAGC
* * * * *
766205 AGTAGAACAAATCCCCTCTTTCCATATTTTATCTTTCCTG-AGTAGC
1 AGTGGAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAAGTAGC
766251 AGTGGAACA
1 AGTGGAACA
766260 AGTCTTCCTC
Statistics
Matches: 102, Mismatches: 24, Indels: 28
0.66 0.16 0.18
Matches are distributed among these distances:
39 20 0.20
40 3 0.03
41 7 0.07
42 2 0.02
43 5 0.05
45 14 0.14
46 34 0.33
47 17 0.17
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (47 bp):
AGTGGAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAAGTAGC
Found at i:766337 original size:133 final size:134
Alignment explanation
Indices: 766002--766363 Score: 475
Period size: 131 Copynumber: 2.7 Consensus size: 134
765992 AATAAATCTA
* * * * *
766002 CCTCCATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACGTTTCTAGATATGATTTTCCCCG
1 CCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACGTTTCCAGATCTGATTTTCCCTG
* ** * *
766067 AATAAATAGTGGAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCAGTGGAACAAGT
66 AAGAAGCAGTAGAACAAATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCAGTGGAACAAGT
766132 CTGT
131 CTGT
766136 -CTCGA-T-AATCTTCCCTGAAGAACAGTGGAATGAATCAACGTTTCCAGATCTGATTTTCCCTG
1 CCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACGTTTCCAGATCTGATTTTCCCTG
* * *
766198 AAGAAGCAGTAGAACAAATCCCCTCTTTCCATATTTTATCTTTCCTGAGTAGCAGTGGAACAAGT
66 AAGAAGCAGTAGAACAAATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCAGTGGAACAAGT
766263 CT-T
131 CTGT
* * * *
766266 CCTCGATTCAATCTTCGCC-GAAGAATAATGGAATGAATCAACATTTCCATATCTGATTTTCCCT
1 CCTCGATTCAATCTTC-CCTGAAGAACAGTGGAATGAATCAACGTTTCCAGATCTGATTTTCCCT
* * * *
766330 AAAGAAGCA-TCAGAACATATCACCTCTTTTCAGA
65 GAAGAAGCAGT-AGAACAAATCCCCTCTTTCCAGA
766364 CTCCATCTTT
Statistics
Matches: 201, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
130 1 0.00
131 116 0.58
132 3 0.01
133 79 0.39
134 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (134 bp):
CCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACGTTTCCAGATCTGATTTTCCCTG
AAGAAGCAGTAGAACAAATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCAGTGGAACAAGT
CTGT
Found at i:766835 original size:21 final size:21
Alignment explanation
Indices: 766776--766835 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
766766 CATCAAGTCA
*
766776 ACCAAATCAGCAAACAACAAG
1 ACCAAATCAGCAAACAATAAG
* *
766797 ACCAAATCAACAAGCAATAAG
1 ACCAAATCAGCAAACAATAAG
*
766818 ACCGAA-CACGCAAACAAT
1 ACCAAATCA-GCAAACAAT
766836 GTAATCATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.55, C:0.28, G:0.10, T:0.07
Consensus pattern (21 bp):
ACCAAATCAGCAAACAATAAG
Found at i:768887 original size:132 final size:132
Alignment explanation
Indices: 768573--768914 Score: 454
Period size: 133 Copynumber: 2.6 Consensus size: 132
768563 TTATTTCGGT
* * * *
768573 TGGAGTAATAAATGACTACTTTAAGACGTGAGAGGTCATTTATTCTCGACTGGAAATAATTAGAT
1 TGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGAT
* * * * * **
768638 ATCACCATTTTTCTCTCTAATCAATATTGATTTTTAAGACAAAGTAGTATTATCTTTTTTAATTC
66 ATTATCGTTTTTCTCTCGAATCAATATTGAATTTTAAGACAAAGTAGTATTATCTTTCCT-ATTC
**
768703 GGT
130 GAA
* *
768706 TGGAGTAATAAATGACTGATTTAAGGCATGAGAGTTCATTTATTCTCGATTGGAAATAATTAGAT
1 TGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGAT
* * * *
768771 ATTGTCGTTTTTCTCTCGAATCAATATTGAATTTTAAGATGAAA-TAGTGTTATGTCTTCCT-TT
66 ATTATCGTTTTTCTCTCGAATCAATATTGAATTTTAAGA-CAAAGTAGTATTATCT-TTCCTATT
768834 CGAA
129 CGAA
* *
768838 TGGAGTAATAATTGACTGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTATAT
1 TGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGAT
768903 ATTATCGTTTTT
66 ATTATCGTTTTT
768915 GTTCTTAAAA
Statistics
Matches: 183, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
132 76 0.42
133 101 0.55
134 6 0.03
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (132 bp):
TGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGAT
ATTATCGTTTTTCTCTCGAATCAATATTGAATTTTAAGACAAAGTAGTATTATCTTTCCTATTCG
AA
Found at i:772462 original size:17 final size:17
Alignment explanation
Indices: 772440--772475 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
772430 TCCAAATTTC
772440 TTTATATTAGTAGTTCA
1 TTTATATTAGTAGTTCA
772457 TTTATATTAGTAGTTCA
1 TTTATATTAGTAGTTCA
772474 TT
1 TT
772476 CTATTGAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (17 bp):
TTTATATTAGTAGTTCA
Found at i:774577 original size:20 final size:20
Alignment explanation
Indices: 774526--774580 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
774516 TATTTTATTT
*
774526 TTATTTTATGTTTTTTACTAG
1 TTATTTTAT-TTTATTACTAG
* *
774547 TT-TTATATTTTATTACTTG
1 TTATTTTATTTTATTACTAG
774566 TTATTTTATTTTATT
1 TTATTTTATTTTATT
774581 TTTAAATTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 11 0.38
20 16 0.55
21 2 0.07
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATTTTATTTTATTACTAG
Found at i:777251 original size:15 final size:15
Alignment explanation
Indices: 777230--777265 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
777220 GGAGTTGTAC
777230 ATCTGAAGATTACAT
1 ATCTGAAGATTACAT
* *
777245 GTCTGAAGATTTCAT
1 ATCTGAAGATTACAT
777260 ATCTGA
1 ATCTGA
777266 TGAAGAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (15 bp):
ATCTGAAGATTACAT
Found at i:793747 original size:18 final size:18
Alignment explanation
Indices: 793705--793748 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
793695 ATTAAACAAA
*
793705 ATAAAGCAATAAAATATT
1 ATAAAGTAATAAAATATT
793723 ATAAAGTAATAAAATATT
1 ATAAAGTAATAAAATATT
793741 ATAAAGTA
1 ATAAAGTA
793749 TGACTGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (18 bp):
ATAAAGTAATAAAATATT
Found at i:798259 original size:55 final size:56
Alignment explanation
Indices: 798175--798319 Score: 186
Period size: 55 Copynumber: 2.6 Consensus size: 56
798165 TGAAATGGGA
* * * * * *
798175 AGGGTATCGATACTCTTCTTATTGTACCGATACACT-AATGGTACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACCGATACACTAAATAGCACTCGATGTTTTG
*
798230 AGGGTATCGATACACTCCTCAGTGTACCGATA-AATAAATAGCACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACCGATACACTAAATAGCACTCGATGTTTTG
* * *
798285 AGGGTATCAATGCACTCCTCAGTGTACTGATACAC
1 AGGGTATCGATACACTCCTCAGTGTACCGATACAC
798320 ACTCATTCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 2 0.03
55 74 0.96
56 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (56 bp):
AGGGTATCGATACACTCCTCAGTGTACCGATACACTAAATAGCACTCGATGTTTTG
Found at i:804525 original size:21 final size:21
Alignment explanation
Indices: 804444--804518 Score: 134
Period size: 21 Copynumber: 3.6 Consensus size: 21
804434 CACTGAAGTG
804444 CCACATATTTGTCCCGAAGGA
1 CCACATATTTGTCCCGAAGGA
804465 CCACATATTTGTCCCGAAGGA
1 CCACATATTTGTCCCGAAGGA
804486 CCACATATTTGTCCCGAA-GA
1 CCACATATTTGTCCCGAAGGA
804506 CCACATAGTTTGT
1 CCACATA-TTTGT
804519 ATCGAAGTGC
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 9 0.17
21 44 0.83
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (21 bp):
CCACATATTTGTCCCGAAGGA
Found at i:805216 original size:55 final size:55
Alignment explanation
Indices: 805129--805274 Score: 213
Period size: 55 Copynumber: 2.7 Consensus size: 55
805119 CGAAATGGCA
* * *
805129 AGGGTATCGATACTCTCCTCAGTGTA-TCGATACACTAATGGCACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACT-GATACACAAATAGCACTCGATGTTTTG
* *
805184 AGGGTATTGATACACTCCTTAGTGTACTGATACACAAATAGCACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACTGATACACAAATAGCACTCGATGTTTTG
* *
805239 AGGGTATCGATACACTCCTCAATGTACCGATACACA
1 AGGGTATCGATACACTCCTCAGTGTACTGATACACA
805275 CTCATTCAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
55 80 0.99
56 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (55 bp):
AGGGTATCGATACACTCCTCAGTGTACTGATACACAAATAGCACTCGATGTTTTG
Found at i:808467 original size:13 final size:13
Alignment explanation
Indices: 808435--808469 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
808425 TCCAAATGTT
* *
808435 CAATCACATATGA
1 CAATCATATATAA
808448 CAATCATATATAA
1 CAATCATATATAA
808461 CAATCATAT
1 CAATCATAT
808470 TAAATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.29
Consensus pattern (13 bp):
CAATCATATATAA
Found at i:829680 original size:55 final size:53
Alignment explanation
Indices: 829531--829680 Score: 135
Period size: 55 Copynumber: 2.8 Consensus size: 53
829521 TCCTTGATAG
* *
829531 GATGTTTT-CAAATGAACTTTTAAAAGAAGCTAAGCCTAATTTTTAATGGTTTATT
1 GATGTTTTCCAAAT-AA-TTTT-AAAGAAACTAAGCCTAATTTTCAATGGTTTATT
* * * * ** * *
829586 GATGTTTTCAAAAGAGTTTT-TAGAAACTAATTCTGATTTTCAA-GGTTTCTT
1 GATGTTTTCCAAATAATTTTAAAGAAACTAAGCCTAATTTTCAATGGTTTATT
829637 GATGATTATTTCCAAATAATTTTAAAGAAACTAAGCCTAATTTT
1 GATG--T-TTTCCAAATAATTTTAAAGAAACTAAGCCTAATTTT
829681 TAGGGGTTTT
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
51 11 0.15
52 17 0.23
53 1 0.01
54 16 0.22
55 25 0.34
56 3 0.04
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (53 bp):
GATGTTTTCCAAATAATTTTAAAGAAACTAAGCCTAATTTTCAATGGTTTATT
Found at i:830216 original size:60 final size:60
Alignment explanation
Indices: 830113--830277 Score: 240
Period size: 60 Copynumber: 2.8 Consensus size: 60
830103 GGATGTTTTC
* * *
830113 AACATTTCCTATTGCTTGATTCACAACACTTCGAATCAACAACGCCCCACCAGAGGGGTT
1 AACATTTCCTATTGCTCGATTCACAACACTTCAAATCAGCAACGCCCCACCAGAGGGGTT
* * * * *
830173 AATATTTCCTATTGCTCGATTCAGAAGACTTCAAATTAGCAACGCCCCACTAGAGGGGTT
1 AACATTTCCTATTGCTCGATTCACAACACTTCAAATCAGCAACGCCCCACCAGAGGGGTT
* *
830233 AACATTTCCTATTACTCAATTCACAACACTTCAAATCAGCAACGC
1 AACATTTCCTATTGCTCGATTCACAACACTTCAAATCAGCAACGC
830278 ATCACTCGAG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (60 bp):
AACATTTCCTATTGCTCGATTCACAACACTTCAAATCAGCAACGCCCCACCAGAGGGGTT
Found at i:832060 original size:11 final size:11
Alignment explanation
Indices: 832035--832065 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
832025 AGCCTTTGAA
832035 TTTTAATTT-T
1 TTTTAATTTAT
832045 TTTTAATTTAT
1 TTTTAATTTAT
832056 TTTTAATTTA
1 TTTTAATTTA
832066 CTCCCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTAATTTAT
Found at i:832178 original size:22 final size:22
Alignment explanation
Indices: 832125--832179 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
832115 TTAGGTTTAA
*
832125 TTTA-TTTTTATTTTATGTTGT
1 TTTATTTTTTATTTTATGTTAT
832146 TGTTATTTTTTATTATT-TGTTAT
1 T-TTATTTTTTATT-TTATGTTAT
832169 TTTATTTTTTA
1 TTTATTTTTTA
832180 AATTAGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 13 0.43
23 14 0.47
24 2 0.07
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.76
Consensus pattern (22 bp):
TTTATTTTTTATTTTATGTTAT
Found at i:833562 original size:55 final size:56
Alignment explanation
Indices: 833441--833562 Score: 147
Period size: 55 Copynumber: 2.2 Consensus size: 56
833431 TGAATGACAT
** * * * * *
833441 GTTCAATTTGGTACCTAATTGTTTTGGTCTAGTTAGATACTTGCATTTGGCTTCAAT
1 GTTCAATTTGACACCTAATTGTTTT-GTCCAGATAGATACTTGAACTTGGCTTCAAA
* *
833498 GTTCAATTTGACACCTAATTGTTTT-TCCAGATAGGTACTTGAACTTGGGTTCAAA
1 GTTCAATTTGACACCTAATTGTTTTGTCCAGATAGATACTTGAACTTGGCTTCAAA
833553 GTTCAATTTG
1 GTTCAATTTG
833563 GCATCTAAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 33 0.59
57 23 0.41
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.43
Consensus pattern (56 bp):
GTTCAATTTGACACCTAATTGTTTTGTCCAGATAGATACTTGAACTTGGCTTCAAA
Found at i:833613 original size:31 final size:32
Alignment explanation
Indices: 833570--833647 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
833560 TTGGCATCTA
*
833570 AACATTTTTGGTTTAAGTAGATACCTGAATTT
1 AACATTTTTGGTTCAAGTAGATACCTGAATTT
* * *
833602 AACA-TTTTGGTTCAAGTTGATACTTGAACTT
1 AACATTTTTGGTTCAAGTAGATACCTGAATTT
* *
833633 GA-ATTTTTTGTTCAA
1 AACATTTTTGGTTCAA
833648 ACAAGTACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 1 0.03
31 34 0.87
32 4 0.10
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.45
Consensus pattern (32 bp):
AACATTTTTGGTTCAAGTAGATACCTGAATTT
Found at i:836930 original size:30 final size:30
Alignment explanation
Indices: 836878--836938 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
836868 TTACAGTCAA
** *
836878 ATACCTAAAATATAATGTAAAAAATATTAG
1 ATACCTAAAATATAATCAAAAAAAAATTAG
836908 ATACCTAAATATATAA-CAAAAAAAAATTAG
1 ATACCTAAA-ATATAATCAAAAAAAAATTAG
836938 A
1 A
836939 CACATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (30 bp):
ATACCTAAAATATAATCAAAAAAAAATTAG
Found at i:838684 original size:24 final size:25
Alignment explanation
Indices: 838651--838698 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
838641 GAATAGTTTG
*
838651 TTATGCTGTTTGGTCGCTAAGAAAA
1 TTATGCTGTTTGGTCACTAAGAAAA
*
838676 TTAT-CTGTTTGGTTACTAAGAAA
1 TTATGCTGTTTGGTCACTAAGAAA
838699 TAGAAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (25 bp):
TTATGCTGTTTGGTCACTAAGAAAA
Found at i:843672 original size:60 final size:60
Alignment explanation
Indices: 843608--843734 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
843598 TTTTATTTAT
* * ** *
843608 AAACTATGACTATAATTTTAAATTAGTCTTTAAAC-TTTTGAACATTTCAATTTTACTCCC
1 AAACTATGACAATAATTCTAAATTAGTCCATAAACTTTTTGAACATTTCAATTTCA-TCCC
* * * * * *
843668 AAACTATGGCAATCATTCTAAATTGGTCCATAAACTTTTTGAATATTTTAATTTCATCTC
1 AAACTATGACAATAATTCTAAATTAGTCCATAAACTTTTTGAACATTTCAATTTCATCCC
843728 AAACTAT
1 AAACTAT
843735 ATGTATATAC
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 38 0.69
61 17 0.31
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (60 bp):
AAACTATGACAATAATTCTAAATTAGTCCATAAACTTTTTGAACATTTCAATTTCATCCC
Found at i:845101 original size:23 final size:23
Alignment explanation
Indices: 845075--845141 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
845065 CTTATAAAGT
*
845075 TGTCCTGAAGGACCGCATAGAAA
1 TGTCCCGAAGGACCGCATAGAAA
* *
845098 TGTCCCAAAGGACCGCGTAGAAA
1 TGTCCCGAAGGACCGCATAGAAA
*
845121 TATCCCGAAGGACCGCATAGA
1 TGTCCCGAAGGACCGCATAGA
845142 TATCCCGAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.15
Consensus pattern (23 bp):
TGTCCCGAAGGACCGCATAGAAA
Found at i:845146 original size:21 final size:22
Alignment explanation
Indices: 845081--845155 Score: 89
Period size: 23 Copynumber: 3.4 Consensus size: 22
845071 AAGTTGTCCT
*
845081 GAAGGACCGCATAGAAATGTCCC
1 GAAGGACCGCATAG-AATATCCC
* *
845104 AAAGGACCGCGTAGAAATATCCC
1 GAAGGACCGCATAG-AATATCCC
845127 GAAGGACCGCATAG-ATATCCC
1 GAAGGACCGCATAGAATATCCC
*
845148 GAATGACC
1 GAAGGACC
845156 ACTCCTTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.30
23 32 0.70
ACGTcount: A:0.36, C:0.27, G:0.24, T:0.13
Consensus pattern (22 bp):
GAAGGACCGCATAGAATATCCC
Found at i:845535 original size:19 final size:19
Alignment explanation
Indices: 845511--845571 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
845501 ATCTCATATC
845511 ATGTCTCATGTAACCACAT
1 ATGTCTCATGTAACCACAT
* * *
845530 ATGTCTTATCT---CATAT
1 ATGTCTCATGTAACCACAT
*
845546 CATGTCTCGTGTAACCACAT
1 -ATGTCTCATGTAACCACAT
845566 ATGTCT
1 ATGTCT
845572 TATCTCATAA
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
16 4 0.13
17 8 0.26
19 15 0.48
20 4 0.13
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (19 bp):
ATGTCTCATGTAACCACAT
Found at i:845542 original size:36 final size:36
Alignment explanation
Indices: 845500--845580 Score: 153
Period size: 36 Copynumber: 2.2 Consensus size: 36
845490 TTTTCTCATA
845500 TATCTCATATCATGTCTCATGTAACCACATATGTCT
1 TATCTCATATCATGTCTCATGTAACCACATATGTCT
*
845536 TATCTCATATCATGTCTCGTGTAACCACATATGTCT
1 TATCTCATATCATGTCTCATGTAACCACATATGTCT
845572 TATCTCATA
1 TATCTCATA
845581 ACATATATCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.40
Consensus pattern (36 bp):
TATCTCATATCATGTCTCATGTAACCACATATGTCT
Found at i:852806 original size:21 final size:21
Alignment explanation
Indices: 852782--852842 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 21
852772 TCCTTGAATA
852782 TTCATCGATACACTATGAAGG
1 TTCATCGATACACTATGAAGG
* * * *
852803 TTCACCGATGCATTATTTGAATG
1 TTCATCGATACACTA--TGAAGG
*
852826 TGCATCGATACACTATG
1 TTCATCGATACACTATG
852843 CAGTGTACCG
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
21 14 0.47
23 16 0.53
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (21 bp):
TTCATCGATACACTATGAAGG
Found at i:852810 original size:44 final size:44
Alignment explanation
Indices: 852738--852857 Score: 154
Period size: 44 Copynumber: 2.8 Consensus size: 44
852728 TTGTGCTAAG
* *
852738 TGCATCGATACACCATGAAAGTGTACCGATGCATTCCTTGAATA
1 TGCATCGATACACTATGAAAGTGTACCGATGCATTACTTGAATA
* * * *
852782 TTCATCGATACACTATGAAGGT-TCACCGATGCATTATTTGAATG
1 TGCATCGATACACTATGAAAGTGT-ACCGATGCATTACTTGAATA
*
852826 TGCATCGATACACTATG-CAGTGTACCGATGCA
1 TGCATCGATACACTATGAAAGTGTACCGATGCA
852858 CCCGTCGGGT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
43 12 0.18
44 53 0.82
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
TGCATCGATACACTATGAAAGTGTACCGATGCATTACTTGAATA
Found at i:853248 original size:19 final size:20
Alignment explanation
Indices: 853226--853267 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
853216 ACACAAGATT
*
853226 TTTCAAAAAAAATCAAA-AA
1 TTTCAAAAAAAATAAAATAA
* *
853245 TTTCGAAATAAATAAAATAA
1 TTTCAAAAAAAATAAAATAA
853265 TTT
1 TTT
853268 TAATTTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (20 bp):
TTTCAAAAAAAATAAAATAA
Found at i:856919 original size:24 final size:25
Alignment explanation
Indices: 856876--856939 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
856866 AAACTCAAAT
* *
856876 AACTTGACTCTACTCAAATTTTACA
1 AACTCGACTCGACTCAAATTTTACA
* *
856901 AATTCGACTCGACT-AAATTTTATA
1 AACTCGACTCGACTCAAATTTTACA
*
856925 AACTCGACTAGACTC
1 AACTCGACTCGACTC
856940 GAAAAAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 21 0.66
25 11 0.34
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (25 bp):
AACTCGACTCGACTCAAATTTTACA
Found at i:858223 original size:29 final size:27
Alignment explanation
Indices: 858185--858239 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
858175 TAATTATTAT
* *
858185 TTAAATTTTAAATATATATAATAATATAA
1 TTAAAATTTAAATA-ATA-AAAAATATAA
*
858214 TTAAAATTTATATAATAAAAAATATA
1 TTAAAATTTAAATAATAAAAAATATA
858240 TAAAACCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 8 0.35
28 3 0.13
29 12 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TTAAAATTTAAATAATAAAAAATATAA
Found at i:858383 original size:18 final size:18
Alignment explanation
Indices: 858360--858403 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
858350 TTAATCATTA
*
858360 TATAATAGTA-TATTATAT
1 TATAATAGAAGTA-TATAT
858378 TATAATAGAAGTATATAT
1 TATAATAGAAGTATATAT
858396 TAT-ATAGA
1 TATAATAGA
858404 TTGATGTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 17 0.71
19 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TATAATAGAAGTATATAT
Found at i:858706 original size:26 final size:26
Alignment explanation
Indices: 858658--858708 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
858648 TATAATTAAC
*
858658 ATTCATGATAGTTATTATAAAAAAAG
1 ATTCATGATAGTTATTAAAAAAAAAG
*
858684 ATTCATGATA-TTTTTAAAGAAAAAA
1 ATTCATGATAGTTATTAAA-AAAAAA
858709 TTAAATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.51, C:0.04, G:0.10, T:0.35
Consensus pattern (26 bp):
ATTCATGATAGTTATTAAAAAAAAAG
Found at i:859388 original size:18 final size:19
Alignment explanation
Indices: 859365--859409 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
859355 CCCAATAATC
859365 TTATTCC-CTGGTAATCTT
1 TTATTCCACTGGTAATCTT
859383 TTATTCCCACTGGTAATCTT
1 TTATT-CCACTGGTAATCTT
*
859403 ATATTCC
1 TTATTCC
859410 GTGAACCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 4 0.17
20 15 0.62
ACGTcount: A:0.20, C:0.24, G:0.09, T:0.47
Consensus pattern (19 bp):
TTATTCCACTGGTAATCTT
Found at i:859397 original size:20 final size:20
Alignment explanation
Indices: 859372--859409 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
859362 ATCTTATTCC
*
859372 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTATATTCCCA
859392 CTGGTAATCTTATATTCC
1 CTGGTAATCTTATATTCC
859410 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.45
Consensus pattern (20 bp):
CTGGTAATCTTATATTCCCA
Found at i:860416 original size:24 final size:24
Alignment explanation
Indices: 860389--860487 Score: 76
Period size: 24 Copynumber: 4.2 Consensus size: 24
860379 TATATCAAAA
*
860389 ATCAAAACATAATTCAGGTCAAGT
1 ATCAAAACAAAATTCAGGTCAAGT
* * *
860413 ATCAGATCAAAAAT-AGGT-AATGT
1 ATCAAAACAAAATTCAGGTCAA-GT
* *
860436 ATCATAACAAAATCCAGGTCAAGT
1 ATCAAAACAAAATTCAGGTCAAGT
* * * * *
860460 ATCATATCAAAATCCAAGTCAGGT
1 ATCAAAACAAAATTCAGGTCAAGT
860484 ATCA
1 ATCA
860488 TAATAGAATT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
22 2 0.03
23 16 0.26
24 41 0.67
25 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.24
Consensus pattern (24 bp):
ATCAAAACAAAATTCAGGTCAAGT
Found at i:860488 original size:24 final size:24
Alignment explanation
Indices: 860434--860490 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
860424 AATAGGTAAT
*
860434 GTATCATAACAAAATCCAGGTCAA
1 GTATCATAACAAAATCCAAGTCAA
* *
860458 GTATCATATCAAAATCCAAGTCAG
1 GTATCATAACAAAATCCAAGTCAA
860482 GTATCATAA
1 GTATCATAA
860491 TAGAATTCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (24 bp):
GTATCATAACAAAATCCAAGTCAA
Found at i:861667 original size:332 final size:332
Alignment explanation
Indices: 861061--861721 Score: 1108
Period size: 332 Copynumber: 2.0 Consensus size: 332
861051 AGACTTATCC
* * *
861061 TAATCACTTACTTAATCCTCTGTCATTGAGGTTACTTAGTTCATTTAGCACTCAAGTTTATTTCA
1 TAATCACTTACTTAATACTCTGCCATTGAGGTTACTTAGTTCATTTAGCACTCAAGTTTATTCCA
* * *
861126 GTTACTTCAGGGTTTTCTAAGGTAATTCAGACGTTTCTGAATTTCGGATACAAATTGTACTTCCT
66 GTTACTTCAGGGTTTTCCAAGGTAATTCAGACATTTCTGAATTTCGGATACAAATCGTACTTCCT
* *
861191 TTCAGTTCAATTTAATCATATAATAAATTTATTCATGTATTCGTGGTTGATTTATCTCACGAATA
131 TTCAGTTCAATTTAATCATATAATAAAGTCATTCATGTATTCGTGGTTGATTTATCTCACGAATA
* * * *
861256 TCCACTTCTTAGTACCGAATGCACTTTAGAGTTGAGTTGAGCCAAGTACCTCTAGAATTATCATC
196 TCCACTTCTTAGTACCGAAGGCACTCTAGAATTGAGATGAGCCAAGTACCTCTAGAATTATCATC
* * *
861321 GATCCAAACTTGAGAAGAAAAACACGCATTCAAGTGATATTTATGCCATTCAGGTATTGACATAG
261 GATACAAACTTGAGAAGAAAAACACACATTCAAGTGATATCTATGCCATTCAGGTATTGACATAG
861386 CATTAGA
326 CATTAGA
861393 TAATCACTTACTTAATACT-TAGCCATTGAGGTTACTTAGTTCATTTAGCACTCAAGTTTATTCC
1 TAATCACTTACTTAATACTCT-GCCATTGAGGTTACTTAGTTCATTTAGCACTCAAGTTTATTCC
* * *
861457 AGTTATTTCGGGGTTTTCCAAGGTAATTCAGACATTTCTGAATTTCGGATACATATCGTACTTCC
65 AGTTACTTCAGGGTTTTCCAAGGTAATTCAGACATTTCTGAATTTCGGATACAAATCGTACTTCC
861522 TTTCAGTTCAATTTAATCATATAATAAAGTCATTCATGTATTCGTGGTTGATTTATCTCACGAAT
130 TTTCAGTTCAATTTAATCATATAATAAAGTCATTCATGTATTCGTGGTTGATTTATCTCACGAAT
* *
861587 ATCCACTTCTTAGTACCGAAGGCGCTCTAGAATTGAGATGAGCCAAGTACTTCTAGAATTATCAT
195 ATCCACTTCTTAGTACCGAAGGCACTCTAGAATTGAGATGAGCCAAGTACCTCTAGAATTATCAT
* *
861652 CGATATAAACTTGAGAAGAAAAACACACATTCAAGTGATATCTATTCCATTCAGGTATTGACATA
260 CGATACAAACTTGAGAAGAAAAACACACATTCAAGTGATATCTATGCCATTCAGGTATTGACATA
861717 GCATT
325 GCATT
861722 TGGGTTGACC
Statistics
Matches: 306, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
331 1 0.00
332 305 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (332 bp):
TAATCACTTACTTAATACTCTGCCATTGAGGTTACTTAGTTCATTTAGCACTCAAGTTTATTCCA
GTTACTTCAGGGTTTTCCAAGGTAATTCAGACATTTCTGAATTTCGGATACAAATCGTACTTCCT
TTCAGTTCAATTTAATCATATAATAAAGTCATTCATGTATTCGTGGTTGATTTATCTCACGAATA
TCCACTTCTTAGTACCGAAGGCACTCTAGAATTGAGATGAGCCAAGTACCTCTAGAATTATCATC
GATACAAACTTGAGAAGAAAAACACACATTCAAGTGATATCTATGCCATTCAGGTATTGACATAG
CATTAGA
Found at i:861868 original size:26 final size:26
Alignment explanation
Indices: 861810--861868 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
861800 ATTAATCCAA
861810 GACATTTACTTAGTCTAGTCCATAAG
1 GACATTTACTTAGTCTAGTCCATAAG
*
861836 GATATTTACTTAGTCTAGTCCATAAG
1 GACATTTACTTAGTCTAGTCCATAAG
*
861862 GGCATTT
1 GACATTT
861869 TGGTCATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (26 bp):
GACATTTACTTAGTCTAGTCCATAAG
Found at i:867137 original size:15 final size:16
Alignment explanation
Indices: 867110--867142 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
867100 ATTTAACCAA
867110 ATGTTACGGTATAAAC
1 ATGTTACGGTATAAAC
867126 ATGTTA-GGTATAAAC
1 ATGTTACGGTATAAAC
867141 AT
1 AT
867143 TTTGTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.33
Consensus pattern (16 bp):
ATGTTACGGTATAAAC
Done.