Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008138.1 Hibiscus syriacus cultivar Beakdansim tig00110694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3838456
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 18
Found at i:1785230 original size:17 final size:17
Alignment explanation
Indices: 1785208--1785254 Score: 85
Period size: 17 Copynumber: 2.7 Consensus size: 17
1785198 CGTATTTGCT
1785208 ATTTTAATAAAATATTA
1 ATTTTAATAAAATATTA
1785225 ATTTTAATAAAATATTA
1 ATTTTAATAAAATATTA
1785242 ATTTTAATTAAAA
1 ATTTTAA-TAAAA
1785255 AACAAACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 24 0.83
18 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTTAATAAAATATTA
Found at i:1788294 original size:134 final size:134
Alignment explanation
Indices: 1788054--1788660 Score: 698
Period size: 134 Copynumber: 4.5 Consensus size: 134
1788044 GTCTGTTCTA
* * * * * *
1788054 CTTCTTGAGGGAAAATCAGATTTGTGGTCGTTGATTTATTCCACTGTTACTCAGGGAAGATTGAA
1 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
** * *
1788119 TCGAGAAAGACTTGTTCCACTGTTACTTAGGGAATATCAAATCTTAAAAGAGAGGGATAC-GTTC
66 TCGAGGCAGACTTGTTCCACTGTTACTCAGGGAATATCAAATATTAAAAGAGAGGGAT-CTGTTC
*
1788183 CGCTT
130 TGCTT
* ** * * *
1788188 CTTCTTGAGGGAAAATCATATATGGGGATATTGATTCATTCCATTGTCACTTAAGTAAGATTGAA
1 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
* *
1788253 TCGAGGCAGACTTGTTCCATTGTTACTCAGGGAATATCAAATATTGAAAGAGAGGGATCTGTT-T
66 TCGAGGCAGACTTGTTCCACTGTTACTCAGGGAATATCAAATATTAAAAGAGAGGGATCTGTTCT
*
1788317 GGATT
131 -GCTT
* * * * * *
1788322 TTTCTTGAGAGAAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAATATTGAA
1 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
* * *
1788387 TTGAGGCAGACTTGGACTTGTTTCACTATTACTCAGGGAATATCAAATATTGAAAA-AGAGGGAT
66 TCGAGGC--A----GACTTGTTCCACTGTTACTCAGGGAATATCAAATATT-AAAAGAGAGGGAT
1788451 CTGTTCTGCTT
124 CTGTTCTGCTT
* *
1788462 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCTACTGTCACTCAAGAAAGATTGAA
1 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
* * * * *
1788527 TCGAGGCAGACTTGTTCCAATGTTACTCAGGGAATATTAAATCTTGAAATAGAGGGATCTGTTCT
66 TCGAGGCAGACTTGTTCCACTGTTACTCAGGGAATATCAAATATTAAAAGAGAGGGATCTGTTCT
*
1788592 ACTT
131 GCTT
* * * * * * * * *
1788596 CTTCTTGAGGAAAAATCAGATCTTGGGACATTAATTCATTCCACCGTTATTCAGGGAAGATTGAA
1 CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
1788661 CTGAGGTTGA
Statistics
Matches: 398, Mismatches: 64, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
133 4 0.01
134 275 0.69
136 1 0.00
138 1 0.00
140 113 0.28
141 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (134 bp):
CTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCCACTGTCACTCAAGGAAGATTGAA
TCGAGGCAGACTTGTTCCACTGTTACTCAGGGAATATCAAATATTAAAAGAGAGGGATCTGTTCT
GCTT
Found at i:1788538 original size:274 final size:268
Alignment explanation
Indices: 1788055--1788660 Score: 745
Period size: 274 Copynumber: 2.2 Consensus size: 268
1788045 TCTGTTCTAC
* * * * * * * *
1788055 TTCTTGAGGGAAAATCAGATTTGTGGTCGTTGATTTATTCCACTGTTACTCAGGGAAGATTGAAT
1 TTCTTGAGAGAAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAAGATTGAAT
* * *
1788120 CGAGAAAGACTTGTTCCACTGTTACTTAGGGAATATCAAATCTTAAAAGAGAGGGATACGTTCCG
66 CGAGAAAGACTTGTTCCACTATTACTCAGGGAATATCAAATATTAAAAGAGAGGGATACGTTCCG
* * * * *
1788185 CTTCTTCTTGAGGGAAAATCATATATGGGGATATTGATTCATTCCATTGTCACTTAAGTAAGATT
131 CTTCTTCTTGAGGGAAAATCAGATATGGGGACATTGATTCATTCCACTGTCACTCAAGAAAGATT
*
1788250 GAATCGAGGCAGACTTGTTCCATTGTTACTCAGGGAATATCAAATATTGAAAGAGAGGGATCTGT
196 GAATCGAGGCAGACTTGTTCCAATGTTACTCAGGGAATATCAAATATTGAAAGAGAGGGATCTGT
1788315 TTGGATTT
261 TTGGATTT
*
1788323 TTCTTGAGAGAAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAATATTGAAT
1 TTCTTGAGAGAAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAAGATTGAAT
* * *
1788388 TGAGGCAGACTTGGACTTGTTTCACTATTACTCAGGGAATATCAAATATTGAAAA-AGAGGGAT-
66 CGA-G-A-A---AGACTTGTTCCACTATTACTCAGGGAATATCAAATATT-AAAAGAGAGGGATA
* * *
1788451 CTGTTCTGCTTCTTCTTGAGGGAAAATCAGATATGGGGACGTTGATTCATTCTACTGTCACTCAA
124 C-GTTCCGCTTCTTCTTGAGGGAAAATCAGATATGGGGACATTGATTCATTCCACTGTCACTCAA
* * *
1788516 GAAAGATTGAATCGAGGCAGACTTGTTCCAATGTTACTCAGGGAATATTAAATCTTGAAATAGAG
188 GAAAGATTGAATCGAGGCAGACTTGTTCCAATGTTACTCAGGGAATATCAAATATTGAAAGAGAG
*
1788581 GGATCTGTTCT--ACTTC
253 GGATCTGTT-TGGA-TTT
* * * * * ** * *
1788597 TTCTTGAG-GAAAAATCAGATCTTGGGACATTAATTCATTCCACCGTTATTCAGGGAAGATTGAA
1 TTCTTGAGAG-AAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAAGATTGAA
1788661 CTGAGGTTGA
Statistics
Matches: 289, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
268 58 0.20
269 1 0.00
270 1 0.00
271 1 0.00
273 3 0.01
274 220 0.76
275 5 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (268 bp):
TTCTTGAGAGAAAATCAAATATGGGGACGTTGATTCATTCCACTATCACTCAGGGAAGATTGAAT
CGAGAAAGACTTGTTCCACTATTACTCAGGGAATATCAAATATTAAAAGAGAGGGATACGTTCCG
CTTCTTCTTGAGGGAAAATCAGATATGGGGACATTGATTCATTCCACTGTCACTCAAGAAAGATT
GAATCGAGGCAGACTTGTTCCAATGTTACTCAGGGAATATCAAATATTGAAAGAGAGGGATCTGT
TTGGATTT
Found at i:1788829 original size:13 final size:13
Alignment explanation
Indices: 1788811--1788835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1788801 ATGTGGAAAT
1788811 CTGAATTGGTTAA
1 CTGAATTGGTTAA
1788824 CTGAATTGGTTA
1 CTGAATTGGTTA
1788836 TTTTTATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (13 bp):
CTGAATTGGTTAA
Found at i:1789842 original size:19 final size:19
Alignment explanation
Indices: 1789820--1789856 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1789810 TTTTCCTTAT
*
1789820 TTTCTTTGATTTTTCATTC
1 TTTCTTTCATTTTTCATTC
*
1789839 TTTCTTTCTTTTTTCATT
1 TTTCTTTCATTTTTCATT
1789857 TGTCTTCTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.16, G:0.03, T:0.73
Consensus pattern (19 bp):
TTTCTTTCATTTTTCATTC
Found at i:1789852 original size:20 final size:19
Alignment explanation
Indices: 1789829--1789952 Score: 65
Period size: 17 Copynumber: 6.7 Consensus size: 19
1789819 TTTTCTTTGA
1789829 TTTTTCATTCTTTCTTTC-T
1 TTTTTCATT-TTTCTTTCTT
*
1789848 TTTTTCATTTGTCTTCTTCTATT
1 TTTTTCA-TT-T-TTCTT-TCTT
1789871 TTTTTCATTTTTC-TTC-T
1 TTTTTCATTTTTCTTTCTT
1789888 TTTTT-ATTTTT-TATT-TT
1 TTTTTCATTTTTCT-TTCTT
1789905 TTATTT--TTTATT-TTTCATT
1 TT-TTTCATTT-TTCTTTC-TT
*
1789924 TTTTT-ATTTTTCTTT-TA
1 TTTTTCATTTTTCTTTCTT
1789941 TTTTTC-TTTTTC
1 TTTTTCATTTTTC
1789953 ATTTTTATTC
Statistics
Matches: 87, Mismatches: 4, Indels: 30
0.72 0.03 0.25
Matches are distributed among these distances:
16 6 0.07
17 28 0.32
18 12 0.14
19 18 0.21
20 6 0.07
21 6 0.07
22 3 0.03
23 8 0.09
ACGTcount: A:0.09, C:0.12, G:0.01, T:0.78
Consensus pattern (19 bp):
TTTTTCATTTTTCTTTCTT
Found at i:1789865 original size:40 final size:38
Alignment explanation
Indices: 1789829--1789964 Score: 107
Period size: 39 Copynumber: 3.5 Consensus size: 38
1789819 TTTTCTTTGA
1789829 TTTTTCATTCTTTCTTTCTTTTTTCATTTGTCTTCTTCTATT
1 TTTTTCATT-TTTC-TTCTTTTTT-ATTTGTCTTCTTCTA-T
* * *
1789871 TTTTTCATTTTTCTTCTTTTTTATTT-TTTATTTTTTAT
1 TTTTTCATTTTTCTTCTTTTTTATTTGTCT-TCTTCTAT
* * * * *
1789909 TTTTT-ATTTTTCAT-TTTTTTATTTTTCTTTTATTTTT
1 TTTTTCATTTTTCTTCTTTTTTATTTGTCTTCT-TCTAT
*
1789946 CTTTTTCATTTTTATTCTT
1 -TTTTTCATTTTTCTTCTT
1789965 CAAGCGAAGT
Statistics
Matches: 80, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
36 13 0.16
37 14 0.17
38 13 0.16
39 16 0.20
40 11 0.14
41 4 0.05
42 9 0.11
ACGTcount: A:0.10, C:0.12, G:0.01, T:0.78
Consensus pattern (38 bp):
TTTTTCATTTTTCTTCTTTTTTATTTGTCTTCTTCTAT
Found at i:1789883 original size:7 final size:7
Alignment explanation
Indices: 1789871--1789958 Score: 67
Period size: 7 Copynumber: 12.7 Consensus size: 7
1789861 TTCTTCTATT
1789871 TTTTTCA
1 TTTTTCA
*
1789878 TTTTTCTTC
1 TTTTTC--A
*
1789887 TTTTTTA
1 TTTTTCA
*
1789894 TTTTTTA
1 TTTTTCA
*
1789901 TTTTTTA
1 TTTTTCA
*
1789908 TTTTTTA
1 TTTTTCA
1789915 TTTTTCA
1 TTTTTCA
*
1789922 TTTTTTTA
1 -TTTTTCA
1789930 TTTTTC-
1 TTTTTCA
1789936 -TTTT-A
1 TTTTTCA
1789941 TTTTTC-
1 TTTTTCA
1789947 TTTTTCA
1 TTTTTCA
1789954 TTTTT
1 TTTTT
1789959 ATTCTTCAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
5 4 0.06
6 10 0.15
7 43 0.63
8 6 0.09
9 5 0.07
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCA
Found at i:1789913 original size:21 final size:20
Alignment explanation
Indices: 1789887--1789958 Score: 83
Period size: 21 Copynumber: 3.6 Consensus size: 20
1789877 ATTTTTCTTC
1789887 TTTTTTATTTTTTATTTTTT
1 TTTTTTATTTTTTATTTTTT
*
1789907 ATTTTTTATTTTTCATTTTTT
1 -TTTTTTATTTTTTATTTTTT
* * *
1789928 TATTTT-TCTTTTATTTTTC
1 TTTTTTATTTTTTATTTTTT
*
1789947 TTTTTCATTTTT
1 TTTTTTATTTTT
1789959 ATTCTTCAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 14 0.33
20 9 0.21
21 19 0.45
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTTATTTTTTATTTTTT
Found at i:1789939 original size:14 final size:14
Alignment explanation
Indices: 1789843--1789951 Score: 77
Period size: 14 Copynumber: 7.6 Consensus size: 14
1789833 TCATTCTTTC
*
1789843 TTTCTTTTTTCATT
1 TTTCTTTTTTTATT
*
1789857 TGTCTTCTTCTATT-TT
1 TTTCTT-TT-T-TTATT
*
1789873 TTTCATTTTTCTTCTT
1 TTTC-TTTTT-TTATT
1789889 TTT-TATTTTTTATT
1 TTTCT-TTTTTTATT
1789903 TTT-TATTTTTTATT
1 TTTCT-TTTTTTATT
1789917 TTTCATTTTTTTATT
1 TTTC-TTTTTTTATT
1789932 TTTC---TTTTATT
1 TTTCTTTTTTTATT
1789943 TTTCTTTTT
1 TTTCTTTTT
1789952 CATTTTTATT
Statistics
Matches: 79, Mismatches: 5, Indels: 22
0.75 0.05 0.21
Matches are distributed among these distances:
11 11 0.14
14 29 0.37
15 22 0.28
16 14 0.18
17 3 0.04
ACGTcount: A:0.09, C:0.10, G:0.01, T:0.80
Consensus pattern (14 bp):
TTTCTTTTTTTATT
Found at i:1789958 original size:14 final size:14
Alignment explanation
Indices: 1789871--1789958 Score: 85
Period size: 14 Copynumber: 6.4 Consensus size: 14
1789861 TTCTTCTATT
*
1789871 TTTTTCATTTTTCTTC
1 TTTTTCA-TTTT-TTA
*
1789887 TTTTTTATTTTTTA
1 TTTTTCATTTTTTA
*
1789901 TTTTTTATTTTTTA
1 TTTTTCATTTTTTA
1789915 TTTTTCATTTTTTTA
1 TTTTTCA-TTTTTTA
1789930 TTTTTC---TTTTA
1 TTTTTCATTTTTTA
*
1789941 TTTTTC-TTTTTCA
1 TTTTTCATTTTTTA
1789954 TTTTT
1 TTTTT
1789959 ATTCTTCAAG
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
11 11 0.17
13 9 0.14
14 22 0.34
15 17 0.26
16 6 0.09
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTCATTTTTTA
Found at i:1799600 original size:17 final size:19
Alignment explanation
Indices: 1799572--1799620 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1799562 TATTTTAAAA
1799572 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
1799590 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
1799609 CACCGATGCACT
1 CATCGATGCACT
1799621 AAGGTTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:1804872 original size:21 final size:21
Alignment explanation
Indices: 1804843--1804893 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
1804833 GTTGTTGTGC
*
1804843 ACAAGTTTTATAGATGAAACA
1 ACAACTTTTATAGATGAAACA
* *
1804864 ATAACTTTTATGGATGAAACA
1 ACAACTTTTATAGATGAAACA
1804885 ACAACTTTT
1 ACAACTTTT
1804894 TGATTATGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
ACAACTTTTATAGATGAAACA
Found at i:1807031 original size:21 final size:21
Alignment explanation
Indices: 1807002--1807045 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1806992 ACTCCGGGAG
* *
1807002 CTAGTTCCTCTCGAGCTGCTC
1 CTAGCTCCTCTCGAGCTCCTC
*
1807023 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCTCGAGCTCCTC
1807044 CT
1 CT
1807046 CCTCCTCCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.43, G:0.16, T:0.34
Consensus pattern (21 bp):
CTAGCTCCTCTCGAGCTCCTC
Found at i:1807771 original size:19 final size:19
Alignment explanation
Indices: 1807725--1807762 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1807715 AAAGGGGGAG
1807725 AAATGTTAAGTGTTGAAAT
1 AAATGTTAAGTGTTGAAAT
1807744 AAATGTTAAGTGTTGAAAT
1 AAATGTTAAGTGTTGAAAT
1807763 GTTTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
AAATGTTAAGTGTTGAAAT
Found at i:1812639 original size:23 final size:22
Alignment explanation
Indices: 1812609--1812690 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 22
1812599 GCATGACCCT
1812609 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* *
1812631 CGTGCATCGGTGCATCA-ACAA-G
1 -GTGCATCGATGCA-CATTCAAGG
* * *
1812653 ATGAATCGATACACATTCAAAGG
1 GTGCATCGATGCACATTC-AAGG
1812676 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
1812691 TGTTAAGTGA
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
20 2 0.05
21 10 0.23
22 3 0.07
23 16 0.36
24 13 0.30
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:1818546 original size:18 final size:19
Alignment explanation
Indices: 1818481--1818548 Score: 97
Period size: 19 Copynumber: 3.6 Consensus size: 19
1818471 TTGGACTCTC
1818481 AGTGCATC-AGTGCACTAAA
1 AGTGCATCGA-TGCACTAAA
1818500 AGTGCATCGATGCACTAAA
1 AGTGCATCGATGCACTAAA
1818519 AGTGCATCGATGCA-TAAA
1 AGTGCATCGATGCACTAAA
1818537 A-TGCATTCGATG
1 AGTGCA-TCGATG
1818549 TTTTAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.09
18 11 0.23
19 31 0.66
20 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (19 bp):
AGTGCATCGATGCACTAAA
Found at i:1822285 original size:3 final size:3
Alignment explanation
Indices: 1822277--1822318 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
1822267 AATAAAAATT
1822277 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1822319 ATATTGGGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1823668 original size:23 final size:22
Alignment explanation
Indices: 1823628--1823670 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
1823618 GTTATATTAT
* *
1823628 AAAATAAGATAAATATCAAATA
1 AAAATAAAATAAAAATCAAATA
1823650 AAAATAAAAATAAAAATCAAA
1 AAAAT-AAAATAAAAATCAAA
1823671 GAAGGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (22 bp):
AAAATAAAATAAAAATCAAATA
Found at i:1823757 original size:22 final size:21
Alignment explanation
Indices: 1823730--1823787 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 21
1823720 AAAATAAATG
* *
1823730 AAGAAAATATTAAATTTTAGAA
1 AAGAAAATATTAAAATATA-AA
*
1823752 AAGAAAAATATAAAAATATAAA
1 AAG-AAAATATTAAAATATAAA
1823774 AA-AAAATATTAAAA
1 AAGAAAATATTAAAA
1823788 GAGAAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 11 0.35
22 7 0.23
23 13 0.42
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (21 bp):
AAGAAAATATTAAAATATAAA
Found at i:1823780 original size:20 final size:21
Alignment explanation
Indices: 1823748--1823802 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
1823738 ATTAAATTTT
*
1823748 AGAAAAGAAAAATATAAAAAT
1 AGAAAAGAAAAATATAAAAAG
* *
1823769 ATAAAA-AAAAATATTAAAAG
1 AGAAAAGAAAAATATAAAAAG
*
1823789 AGAAAATAAAAATA
1 AGAAAAGAAAAATA
1823803 AAACAAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.16
Consensus pattern (21 bp):
AGAAAAGAAAAATATAAAAAG
Found at i:1823920 original size:18 final size:18
Alignment explanation
Indices: 1823899--1823941 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
1823889 AATATTTTTA
* *
1823899 AAATAAAATATAAGAATT
1 AAATAAAAGAAAAGAATT
*
1823917 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
1823935 AAATAAA
1 AAATAAA
1823942 TAATATAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:1825508 original size:200 final size:200
Alignment explanation
Indices: 1824726--1825500 Score: 1059
Period size: 200 Copynumber: 3.9 Consensus size: 200
1824716 AAGGTGGCTT
* * * * * *
1824726 CTTGTTGCCAAATCGTAGCCAACCTTGGTGTTCTTC-TCAGTTTAAAGACCTCAATTTGAAAATT
1 CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTCTTGA-CTTAAAGACCTCAATTT-AAACTT
* * * * *
1824790 CAACCAAAAAGTAATTCCTCGATGCTACCATATGGTTGATATGCCCTCGAGCTGAATGGAATCGA
64 CAACCAGAAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGCTGAATGGAATCGA
* * * *
1824855 ACCCGAAAGTTTTGTTTACATATAACCCTTCTCGCCTTGAGCTATGTTATAAATTCGGCTGAGAG
129 ACCCGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAG
*
1824920 ATAGTTT
194 ATAGTTC
** * *
1824927 CTTGTTGCTAAATCGTAGCCAACCTAAATATTCTTCTTGACTTAAAGACCTCAATTTAAATTTCA
1 CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTCTTGACTTAAAGACCTCAATTTAAACTTCA
* * * *
1824992 ACCGGAAAGTAGTTCCTCGTTGTTACCATGCGGTTGATATGCCTTCGAGCTTAATGGAATCGAAC
66 ACCAGAAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
* * * * *
1825057 TCGAAAGTTTTGTTGACAGATAGCCCTTCTCGCCTTCAACTATGCTATAAATTCTGCTGGGAGAT
131 CCGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGAT
1825122 AGTTC
196 AGTTC
* * * *
1825127 CTTATTGCTAAATCGTAGCCAACCTAGGACTTCTTCTTTACTTAAAGACCTCAGTTTAAACTTCA
1 CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTCTTGACTTAAAGACCTCAATTTAAACTTCA
*
1825192 ACC-GAAAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGGTGAATGGAATCGAA
66 ACCAG-AAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGCTGAATGGAATCGAA
* * * *
1825256 CCCGAAAGTTTTGTTGACAAATAGCCCTTTTCGCCTTGAGCTATGCTGTAAATTCGGCTGGGAGA
130 CCCGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGA
1825321 TAGTTC
195 TAGTTC
* * **
1825327 CTTGTTGCTACATCGCAGCCAACCTAGGTCTTCTTCTTGACTTAAAGACCTCGGTTTAAACTTCA
1 CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTCTTGACTTAAAGACCTCAATTTAAACTTCA
* * * * * *
1825392 ACCAGAAATTAGTTCCTCTTTGCTACCGTGCGGTTGATATGCCTTTGAGCTGAATGAAATCGAAC
66 ACCAGAAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
**
1825457 TTGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATG
131 CCGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATG
1825501 ATGTAAATGG
Statistics
Matches: 507, Mismatches: 64, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
199 1 0.00
200 456 0.90
201 48 0.09
202 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (200 bp):
CTTGTTGCTAAATCGTAGCCAACCTAGGTCTTCTTCTTGACTTAAAGACCTCAATTTAAACTTCA
ACCAGAAAGTAGTTCCTCGTTGCTACCATACGGTTGATATGCCTTCGAGCTGAATGGAATCGAAC
CCGAAAGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTATAAATTCGGCTGGGAGAT
AGTTC
Found at i:1832335 original size:18 final size:18
Alignment explanation
Indices: 1832314--1832367 Score: 108
Period size: 18 Copynumber: 3.0 Consensus size: 18
1832304 AATAAGATCG
1832314 GACGGAAGGAAAAGATTA
1 GACGGAAGGAAAAGATTA
1832332 GACGGAAGGAAAAGATTA
1 GACGGAAGGAAAAGATTA
1832350 GACGGAAGGAAAAGATTA
1 GACGGAAGGAAAAGATTA
1832368 AAATACCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.50, C:0.06, G:0.33, T:0.11
Consensus pattern (18 bp):
GACGGAAGGAAAAGATTA
Found at i:1833518 original size:24 final size:24
Alignment explanation
Indices: 1833488--1833551 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
1833478 ATTTTAGATT
*
1833488 TGAATTCTGTTATGATACCTGGCC
1 TGAATTCTGTTCTGATACCTGGCC
* * *
1833512 TGGATTCTGTTCTTATACCTGGTC
1 TGAATTCTGTTCTGATACCTGGCC
*
1833536 TGAATTATGTTCTGAT
1 TGAATTCTGTTCTGAT
1833552 TTTTGAAATG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (24 bp):
TGAATTCTGTTCTGATACCTGGCC
Found at i:1833564 original size:48 final size:48
Alignment explanation
Indices: 1833512--1833608 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
1833502 ATACCTGGCC
* * * *
1833512 TGGATTCTGTTCTTATACCTGGTCTGAATTATGTTCTGATTTT-TGAAA
1 TGGATTCTGTTATGATACCTGATATGAATTATGTTCTG-TTTTCTGAAA
* *
1833560 TGGATTCTGTTATGATATCTGATATGAATTATGTTTTGTTTTCTGAAA
1 TGGATTCTGTTATGATACCTGATATGAATTATGTTCTGTTTTCTGAAA
1833608 T
1 T
1833609 CTCTGTTTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (48 bp):
TGGATTCTGTTATGATACCTGATATGAATTATGTTCTGTTTTCTGAAA
Found at i:1833594 original size:24 final size:24
Alignment explanation
Indices: 1833536--1833608 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
1833526 ATACCTGGTC
* * *
1833536 TGAATTATGTTCTGATTTTTGAAA
1 TGAATTATGTTATGATATCTGAAA
* * *
1833560 TGGATTCTGTTATGATATCTGATA
1 TGAATTATGTTATGATATCTGAAA
* * *
1833584 TGAATTATGTTTTGTTTTCTGAAA
1 TGAATTATGTTATGATATCTGAAA
1833608 T
1 T
1833609 CTCTGTTTAC
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (24 bp):
TGAATTATGTTATGATATCTGAAA
Found at i:1837734 original size:6 final size:5
Alignment explanation
Indices: 1837710--1837813 Score: 55
Period size: 5 Copynumber: 21.4 Consensus size: 5
1837700 AAAGAGAATA
* *
1837710 AAAAT AACAC AAAAT AAAAT AAAA- AAGAAGT GAGAAA- ATAAAT -AAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AA-T -A-AAAT A-AAAT AAAAT
*
1837757 -AAAT -AAAT -AAAT -AAAT -AAAT AAAAT AATAAT -AAAT AAAAG AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT
*
1837802 ATAAT AAAAT AA
1 AAAAT AAAAT AA
1837814 TAAATAATAG
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
4 29 0.36
5 45 0.56
6 3 0.04
8 3 0.04
9 1 0.01
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:1837754 original size:4 final size:4
Alignment explanation
Indices: 1837745--1837820 Score: 81
Period size: 4 Copynumber: 19.5 Consensus size: 4
1837735 AGAAGTGAGA
1837745 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA- ATAAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT
*
1837792 AAA- AGA- AAAT ATAAT AAA- ATAAT AAAT AA
1 AAAT AAAT AAAT A-AAT AAAT A-AAT AAAT AA
1837821 TAGTAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 14
0.80 0.03 0.18
Matches are distributed among these distances:
3 9 0.14
4 49 0.78
5 5 0.08
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:1837835 original size:15 final size:15
Alignment explanation
Indices: 1837769--1837835 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
1837759 ATAAATAAAT
*
1837769 AAATA-AATAAAATA
1 AAATATAATAAAAGA
1837783 ATAATA-AATAAAAGA
1 A-AATATAATAAAAGA
*
1837798 AAATATAATAAAATA
1 AAATATAATAAAAGA
**
1837813 ATAA-ATAATAGTAGA
1 A-AATATAATAAAAGA
1837828 AAATATAA
1 AAATATAA
1837836 AAAGGGTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
14 7 0.16
15 35 0.80
16 2 0.05
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (15 bp):
AAATATAATAAAAGA
Found at i:1843383 original size:15 final size:15
Alignment explanation
Indices: 1843363--1843392 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1843353 TATCACAATC
1843363 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
1843378 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
1843393 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:1849678 original size:21 final size:22
Alignment explanation
Indices: 1849645--1849685 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
1849635 TTAAATATTA
1849645 TAAAGGAAGTACCGATACTCAT
1 TAAAGGAAGTACCGATACTCAT
1849667 TAAAGG-AGTACCGATACTC
1 TAAAGGAAGTACCGATACTC
1849686 CCTGTCCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (22 bp):
TAAAGGAAGTACCGATACTCAT
Found at i:1850892 original size:20 final size:20
Alignment explanation
Indices: 1850867--1850910 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1850857 TTTTCTCTTG
*
1850867 AAAACAAAATTG-GATTTTGA
1 AAAACAAAA-TGAAATTTTGA
1850887 AAAACAAAATGAAATTTTGA
1 AAAACAAAATGAAATTTTGA
1850907 AAAA
1 AAAA
1850911 TGATTTTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.25
Consensus pattern (20 bp):
AAAACAAAATGAAATTTTGA
Found at i:1857737 original size:3 final size:3
Alignment explanation
Indices: 1857729--1857765 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
1857719 TATATTATAT
1857729 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
1857766 CATATTTGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:1862911 original size:32 final size:32
Alignment explanation
Indices: 1862862--1862948 Score: 104
Period size: 32 Copynumber: 2.7 Consensus size: 32
1862852 GAACAATGTG
* * *
1862862 GGCATCTTTGAATATTCAACATCAAATTTTGA
1 GGCATCTTTGGAGATTCAACATCAAATATTGA
* *
1862894 GGCAT-TTTCGGAGATTCAACATCGAATATTGG
1 GGCATCTTT-GGAGATTCAACATCAAATATTGA
*
1862926 GGCATCTTTGGGGATTCAACATC
1 GGCATCTTTGGAGATTCAACATC
1862949 CATATATAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
31 3 0.06
32 41 0.87
33 3 0.06
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (32 bp):
GGCATCTTTGGAGATTCAACATCAAATATTGA
Found at i:1872518 original size:3 final size:3
Alignment explanation
Indices: 1872510--1872548 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
1872500 TTCGTTTTAT
* *
1872510 TTA TTA TTA TTA TTA ATA TTA GTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1872549 AATAAATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:1879454 original size:19 final size:19
Alignment explanation
Indices: 1879430--1879475 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
1879420 TTACCAGTTA
*
1879430 AACCAAATGACCTCAAAAG
1 AACCAAACGACCTCAAAAG
1879449 AACCAAACGACCTCAAAAG
1 AACCAAACGACCTCAAAAG
1879468 AACCAAAC
1 AACCAAAC
1879476 CTTCAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.54, C:0.30, G:0.09, T:0.07
Consensus pattern (19 bp):
AACCAAACGACCTCAAAAG
Found at i:1880826 original size:32 final size:32
Alignment explanation
Indices: 1880787--1880849 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1880777 TCGGGACACA
*
1880787 AGAAGTATCTCTACGAGATGAGCATAACAACG
1 AGAAGTATCTCTACAAGATGAGCATAACAACG
1880819 AGAAGTATCTCTACAAGATGAGCATAACAAC
1 AGAAGTATCTCTACAAGATGAGCATAACAAC
1880850 CATTTATTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (32 bp):
AGAAGTATCTCTACAAGATGAGCATAACAACG
Found at i:1883608 original size:75 final size:75
Alignment explanation
Indices: 1883476--1883650 Score: 262
Period size: 75 Copynumber: 2.3 Consensus size: 75
1883466 CAAGAAAACA
* * *
1883476 AATGATGGAGCATGCTGAAAGCCCATTTCATTCATGATCAGGAATGTTGACACATTTTGAACGTT
1 AATGATGGGGCATGCTGAAAGCCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACGTT
*
1883541 TGTATTAGCT
66 TGTATTAGCC
* *
1883551 AATGCTGGGGCATGCTGAAAGCCCCTTTCAATCA-GAATCAAGAATGTTGACACATTTTGAACGT
1 AATGATGGGGCATGCTGAAAGCCCATTTCAATCATG-ATCAAGAATGTTGACACATTTTGAACGT
1883615 TTGTATTAGCC
65 TTGTATTAGCC
* *
1883626 AATGTTGGGGCATGCTGAAGGCCCA
1 AATGATGGGGCATGCTGAAAGCCCA
1883651 CATCGTCATA
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
74 1 0.01
75 89 0.99
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (75 bp):
AATGATGGGGCATGCTGAAAGCCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACGTT
TGTATTAGCC
Found at i:1884813 original size:22 final size:22
Alignment explanation
Indices: 1884787--1884863 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
1884777 ATCTACACTT
* * *
1884787 TTCAAAGATGGTAGACTTTTTC
1 TTCAAAGATGATAGACTATCTC
*
1884809 TTCAAAGATGATAGCCTATCTC
1 TTCAAAGATGATAGACTATCTC
* * * *
1884831 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGACTATCTC
*
1884853 TTCAAATATGA
1 TTCAAAGATGA
1884864 AAGCTTTATT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (22 bp):
TTCAAAGATGATAGACTATCTC
Found at i:1885687 original size:46 final size:46
Alignment explanation
Indices: 1885637--1885783 Score: 269
Period size: 46 Copynumber: 3.2 Consensus size: 46
1885627 TGATATTTTT
*
1885637 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCAGGATGTTTTCA
1 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCA
1885683 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-
1 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCA
1885728 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCA
1 AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCA
1885774 AAAAGCCTTC
1 AAAA-CCTTC
1885784 AGGAGCTTTT
Statistics
Matches: 98, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
45 45 0.46
46 48 0.49
47 5 0.05
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (46 bp):
AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCA
Found at i:1885747 original size:45 final size:45
Alignment explanation
Indices: 1885627--1885776 Score: 264
Period size: 45 Copynumber: 3.3 Consensus size: 45
1885617 GGGAGCTTTT
* *
1885627 TGATATTTTTAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
1885672 GGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1885718 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1885763 TGATGTTTTCAAAA
1 TGATGTTTTCAAAA
1885777 AGCCTTCAGG
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 56 0.56
46 44 0.44
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:1885816 original size:167 final size:167
Alignment explanation
Indices: 1885529--1885949 Score: 720
Period size: 167 Copynumber: 2.5 Consensus size: 167
1885519 TTATTTCCCA
*
1885529 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCAT-TCGTAAGCCCTGCAGT
1 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCATCT-GTAAGCCCTTCAGT
* * * *
1885593 GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTTTAAAACCTTCGGGTCATCTGTA
65 GCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACATTCGGGTCATCTGTA
*
1885658 AGCCCTTCAGTGCAGGATGTTTTCAAAAACCTTCGGGT
130 AGCCCTTCAATGCAGGATGTTTTCAAAAACCTTCGGGT
*
1885696 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTG
1 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTG
1885761 CATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACATTCGGGTCATCTGTAA
66 CATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACATTCGGGTCATCTGTAA
* *
1885826 GCCCTTCAATGCATGATGTTTTCAAAAACTTTCGGGT
131 GCCCTTCAATGCAGGATGTTTTCAAAAACCTTCGGGT
*
1885863 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTG
1 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTG
*
1885928 CTTGATGTTTTCAAAAA-CCTTC
66 CATGATGTTTTCAAAAAGCCTTC
1885950 GGGTCATCTG
Statistics
Matches: 241, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
166 5 0.02
167 235 0.98
168 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (167 bp):
CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTG
CATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACATTCGGGTCATCTGTAA
GCCCTTCAATGCAGGATGTTTTCAAAAACCTTCGGGT
Found at i:1885860 original size:46 final size:45
Alignment explanation
Indices: 1885794--1886043 Score: 392
Period size: 45 Copynumber: 5.5 Consensus size: 45
1885784 AGGAGCTTTT
* * *
1885794 TGATATTTTCAAAACATTCGGGTCATCTGTAAGCCCTTCAATGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
1885839 TGATGTTTTCAAAAACTTTCGGGTCATCTGTAAGCCCTTTAGTGCA
1 TGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
1885885 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
1885930 TGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGCCCTTCGGTGCA
1 TGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1885976 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1886021 TGATGTTTTCAAAAAGCCTTCGG
1 TGATGTTTTC-AAAA-CCTTCGG
1886044 AAGCTTTTTG
Statistics
Matches: 189, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 94 0.50
46 88 0.47
47 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:1885954 original size:91 final size:91
Alignment explanation
Indices: 1885794--1886043 Score: 419
Period size: 91 Copynumber: 2.7 Consensus size: 91
1885784 AGGAGCTTTT
* * * *
1885794 TGATATTTTCAAAACATTCGGGTCATCTGTAAGCCCTTCAATGCATGATGTTTTCAAAAACTTTC
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTC
*
1885859 GGGTCATCTGTAAGCCCTTTAGTGCA
66 GGGTCATCTGTAAGCCCTTCAGTGCA
* *
1885885 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCTTGATGTTTTCAAAAACCTTC
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTC
*
1885950 GGGTCATCTGTAAGCCCTTCGGTGCA
66 GGGTCATCTGTAAGCCCTTCAGTGCA
1885976 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAA-CCTT
1886041 CGG
65 CGG
1886044 AAGCTTTTTG
Statistics
Matches: 148, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 141 0.95
92 7 0.05
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (91 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTC
GGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:1886280 original size:3 final size:3
Alignment explanation
Indices: 1886274--1886318 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
1886264 TCATTTCATT
* * *
1886274 TTA TTA TTA TTA TTA TTA TTA GTA GTA GTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1886319 AATAAATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:1888370 original size:115 final size:115
Alignment explanation
Indices: 1888251--1888462 Score: 289
Period size: 115 Copynumber: 1.8 Consensus size: 115
1888241 AATGTTTTAG
** * * * * *
1888251 TTATTTAATTATTTTTTAATATTGAAGGAAAGAGTTGTCTTAAAGCAACTAGAAGCCCTTTTCTA
1 TTATTTAATTATTTTTTAATATCAAAGAAAAGAGTTATCGTAAAGCAACTAGAAGCCATTTGCTA
**
1888316 ATATTTTTAAATAAATAAATATCTTACTATATTAAAATAATTTTTTATTA
66 ATATTTCCAAATAAATAAATATCTTACTATATTAAAATAATTTTTTATTA
* * * *
1888366 TTATTTATTTATTTTTTAATATCAAAGAAAAGAGTTATCGTAAGGCACCTAGAAGCCATTTGCTG
1 TTATTTAATTATTTTTTAATATCAAAGAAAAGAGTTATCGTAAAGCAACTAGAAGCCATTTGCTA
* *
1888431 ATATTTCCAAGTAAATAAATATCTTATTATAT
66 ATATTTCCAAATAAATAAATATCTTACTATAT
1888463 ATATATATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
115 82 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (115 bp):
TTATTTAATTATTTTTTAATATCAAAGAAAAGAGTTATCGTAAAGCAACTAGAAGCCATTTGCTA
ATATTTCCAAATAAATAAATATCTTACTATATTAAAATAATTTTTTATTA
Found at i:1888512 original size:2 final size:2
Alignment explanation
Indices: 1888458--1888502 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
1888448 AATATCTTAT
* *
1888458 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1888500 TA T
1 TA T
1888503 CTTAATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1892794 original size:36 final size:36
Alignment explanation
Indices: 1892742--1892854 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
1892732 GATACTATTT
*
1892742 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
1892778 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
1892814 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
1892849 ACATCA
1 TCATCA
1892855 TCCTTCCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 17 0.24
36 55 0.76
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:1892797 original size:13 final size:11
Alignment explanation
Indices: 1892742--1892840 Score: 67
Period size: 13 Copynumber: 8.3 Consensus size: 11
1892732 GATACTATTT
1892742 TCATCACCATAA
1 TCATCACCAT-A
*
1892754 TCCATCTCCATTA
1 T-CATCACCA-TA
*
1892767 TCA-CGCCTATA
1 TCATCACC-ATA
1892778 TCATCACCATA
1 TCATCACCATA
1892789 GTCCATCACCATTA
1 -T-CATCACCA-TA
*
1892803 TCA-CGCCTATA
1 TCATCACC-ATA
1892814 TCATCACCATA
1 TCATCACCATA
1892825 TTCCATCACCATA
1 -T-CATCACCATA
1892838 TCA
1 TCA
1892841 CGCCAATAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.34
12 16 0.23
13 28 0.39
14 3 0.04
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:1892869 original size:33 final size:33
Alignment explanation
Indices: 1892754--1892893 Score: 97
Period size: 36 Copynumber: 4.1 Consensus size: 33
1892744 ATCACCATAA
* * *
1892754 TCCATCTCCATTATCACGCCTATATCATCA-CCAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC-T
* *
1892788 AGTCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 --TCCATCACCA-TATCACGCCAATAACATCATCC---T
1892826 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
1892859 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
1892892 TC
1 TC
1892894 ATTCATCAAC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
33 24 0.26
34 7 0.08
35 17 0.18
36 43 0.46
38 2 0.02
ACGTcount: A:0.30, C:0.36, G:0.03, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:1897320 original size:36 final size:36
Alignment explanation
Indices: 1897268--1897380 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
1897258 GATACTATTT
*
1897268 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
1897304 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
1897340 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
1897375 ACATCA
1 TCATCA
1897381 TCCTTCCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 17 0.24
36 55 0.76
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:1897323 original size:13 final size:11
Alignment explanation
Indices: 1897268--1897366 Score: 67
Period size: 13 Copynumber: 8.3 Consensus size: 11
1897258 GATACTATTT
1897268 TCATCACCATAA
1 TCATCACCAT-A
*
1897280 TCCATCTCCATTA
1 T-CATCACCA-TA
*
1897293 TCA-CGCCTATA
1 TCATCACC-ATA
1897304 TCATCACCATA
1 TCATCACCATA
1897315 GTCCATCACCATTA
1 -T-CATCACCA-TA
*
1897329 TCA-CGCCTATA
1 TCATCACC-ATA
1897340 TCATCACCATA
1 TCATCACCATA
1897351 TTCCATCACCATA
1 -T-CATCACCATA
1897364 TCA
1 TCA
1897367 CGCCAATAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.34
12 16 0.23
13 28 0.39
14 3 0.04
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:1897395 original size:33 final size:33
Alignment explanation
Indices: 1897280--1897419 Score: 97
Period size: 36 Copynumber: 4.1 Consensus size: 33
1897270 ATCACCATAA
* * *
1897280 TCCATCTCCATTATCACGCCTATATCATCA-CCAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC-T
* *
1897314 AGTCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 --TCCATCACCA-TATCACGCCAATAACATCATCC---T
1897352 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
1897385 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
1897418 TC
1 TC
1897420 ATTCATCAAC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
33 24 0.26
34 7 0.08
35 17 0.18
36 43 0.46
38 2 0.02
ACGTcount: A:0.30, C:0.36, G:0.03, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:1916480 original size:183 final size:184
Alignment explanation
Indices: 1916172--1916555 Score: 625
Period size: 183 Copynumber: 2.1 Consensus size: 184
1916162 TTTTCTAATT
* * * * *
1916172 TATATAA-AAATTAAATATTTTTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATATATAAT
1 TATATAATATATTTAATACTTTTTAATTCAAAAAAAGTTTACAAATAATTTAAATAATATATAAT
*
1916236 TATAAAATAAAAATTTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
66 TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
* *
1916301 GGATCTTAAATTATTAATTGGGTTTTAAAT-AGTTTGGGCTT-AGCCCATATGTTA
131 GGATCTTAAATTATTAATTGAGTTTTAAATGA-TTTGGG-TTGAGCCAATATGTTA
1916355 TATATAATATATTTAATACTTTTTAATT-AAAAAACAGTTTACAAATAATTTAAATAATATATAA
1 TATATAATATATTTAATACTTTTTAATTCAAAAAA-AGTTTACAAATAATTTAAATAATATATAA
*
1916419 TTATAAAATAAAAAATTTATAT-AATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
65 TTATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
1916483 TGGATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCAATATGTTA
130 TGGATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCAATATGTTA
1916538 TATATAATATATTTAATA
1 TATATAATATATTTAATA
1916556 TTTAAAATTT
Statistics
Matches: 188, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
182 2 0.01
183 121 0.64
184 65 0.35
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (184 bp):
TATATAATATATTTAATACTTTTTAATTCAAAAAAAGTTTACAAATAATTTAAATAATATATAAT
TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
GGATCTTAAATTATTAATTGAGTTTTAAATGATTTGGGTTGAGCCAATATGTTA
Found at i:1919222 original size:23 final size:23
Alignment explanation
Indices: 1919179--1919222 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
1919169 AAACCCGATA
**
1919179 GATTAATATTTCTCATATTTAGT
1 GATTAATATTTCAAATATTTAGT
1919202 GATTAATTATTTCAAAT-TTTA
1 GATTAA-TATTTCAAATATTTA
1919223 AGTTTCTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (23 bp):
GATTAATATTTCAAATATTTAGT
Found at i:1919871 original size:38 final size:40
Alignment explanation
Indices: 1919828--1919937 Score: 136
Period size: 43 Copynumber: 2.7 Consensus size: 40
1919818 TAGGGTTAAA
1919828 ATAAAATAAAATAAAATTGAAAAGAAATAATACTAGGGTT
1 ATAAAATAAAATAAAATTGAAAAGAAATAATACTAGGGTT
*
1919868 AAAATAAAATAAAATAAAATTGAAAAGAATTAATACTAGGG-T
1 ---ATAAAATAAAATAAAATTGAAAAGAAATAATACTAGGGTT
1919910 -TAAAATAAAAATATTAAATT-AAAAGAAA
1 ATAAAAT-AAAATA--AAATTGAAAAGAAA
1919938 ATAAAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
38 6 0.10
39 6 0.10
40 7 0.11
41 5 0.08
42 1 0.02
43 37 0.60
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.25
Consensus pattern (40 bp):
ATAAAATAAAATAAAATTGAAAAGAAATAATACTAGGGTT
Found at i:1919873 original size:43 final size:43
Alignment explanation
Indices: 1919818--1919919 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
1919808 TAATTAAAAT
1919818 TAGGGTTAAAATAAAATAAAATAAAATTGAAAAGAAATAATAC
1 TAGGGTTAAAATAAAATAAAATAAAATTGAAAAGAAATAATAC
*
1919861 TAGGGTTAAAATAAAATAAAATAAAATTGAAAAGAATTAATAC
1 TAGGGTTAAAATAAAATAAAATAAAATTGAAAAGAAATAATAC
1919904 TAGGGTTAAAATAAAA
1 TAGGGTTAAAATAAAA
1919920 ATATTAAATT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.61, C:0.02, G:0.13, T:0.25
Consensus pattern (43 bp):
TAGGGTTAAAATAAAATAAAATAAAATTGAAAAGAAATAATAC
Found at i:1923340 original size:20 final size:20
Alignment explanation
Indices: 1923303--1923341 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1923293 AGATTGAGTG
* * *
1923303 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
1923323 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
1923342 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:1923577 original size:20 final size:21
Alignment explanation
Indices: 1923520--1923580 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
1923510 TCCCCTGTGG
1923520 GGGGGAATCAGTTCCCCTTCAAA
1 GGGGGAATCAGTT-CCC-TCAAA
* *
1923543 GGGGGGATCGGTTCCCT-AAA
1 GGGGGAATCAGTTCCCTCAAA
*
1923563 GGGGGAATCAATTCCCTC
1 GGGGGAATCAGTTCCCTC
1923581 TGCACCAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 17 0.53
21 1 0.03
22 3 0.09
23 11 0.34
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (21 bp):
GGGGGAATCAGTTCCCTCAAA
Found at i:1929983 original size:3 final size:3
Alignment explanation
Indices: 1929975--1930000 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1929965 AGAAAAAATA
1929975 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
1930001 GCTTAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1930053 original size:20 final size:20
Alignment explanation
Indices: 1930030--1930078 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
1930020 AAACTATATA
*
1930030 ATATATCATATTTTCAAAAC
1 ATATAACATATTTTCAAAAC
* *
1930050 ATATAACATGTTTTCAAAATT
1 ATATAACATATTTTCAAAA-C
1930071 ATATAACA
1 ATATAACA
1930079 ATATGTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (20 bp):
ATATAACATATTTTCAAAAC
Found at i:1930173 original size:72 final size:71
Alignment explanation
Indices: 1930079--1930343 Score: 215
Period size: 72 Copynumber: 3.7 Consensus size: 71
1930069 TTATATAACA
* * *
1930079 ATATGTTTTT-AAAAATTATACTATATATTTTCAAAAATTATATATTATATGTTTTTTTTCTAAA
1 ATATATTTTTCAAAAACTATACTATATATTTTCAAAAACTATATATTATATGTTTTTTTT-TAAA
1930143 ACTATAT
65 ACTATAT
* * * *****
1930150 A-ATACTTTTTCAAAAACTATACTATATATTTT-TAAAACTATACA--ATATATTTTCAAAAAAA
1 ATATA-TTTTTCAAAAACTATACTATATATTTTCAAAAACTATATATTATATGTTTTTTTTTAAA
1930211 ACTATAT
65 ACTATAT
** * *
1930218 ATTATATGTTTTTTTAAAACTATA-TAATATGTTTTCAAAAAC--TATATCATATGTTTTTTTTT
1 A-TATA--TTTTTCAAAAACTATACT-ATATATTTTCAAAAACTATATATTATATGTTTTTTTTT
1930280 AAAACTATACT
62 AAAACTATA-T
* * *
1930291 ATATATTTTTCAAAAATCATATATTAT-TTTTTTGACAAAACTATATATTATAT
1 ATATATTTTTCAAAAA-C-TATACTATATATTTTCA-AAAACTATATATTATAT
1930344 ATTATCATAT
Statistics
Matches: 150, Mismatches: 28, Indels: 29
0.72 0.14 0.14
Matches are distributed among these distances:
68 11 0.07
69 8 0.05
70 18 0.12
71 44 0.29
72 57 0.38
73 3 0.02
74 9 0.06
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (71 bp):
ATATATTTTTCAAAAACTATACTATATATTTTCAAAAACTATATATTATATGTTTTTTTTTAAAA
CTATAT
Found at i:1930176 original size:48 final size:46
Alignment explanation
Indices: 1930084--1930343 Score: 205
Period size: 47 Copynumber: 5.5 Consensus size: 46
1930074 TAACAATATG
* * *
1930084 TTTTTAAAAATTATACT-ATATATTTTCAAAAATTATATATTATATGTTT
1 TTTTTTAAAACTATA-TAATATATTTTCAAAAA--CTATA-TATATGTTT
1930133 TTTTTCTAAAACTATATAATACT-TTTTCAAAAACTATACTATA----T
1 TTTTT-TAAAACTATATAATA-TATTTTCAAAAACTATA-TATATGTTT
* * * *
1930177 ATTTTTAAAACTATACAATATATTTTCAAAAAAAACTATATATTATATGT
1 TTTTTTAAAACTATATAATATATTTTC---AAAAACTATATA-TATGTTT
*
1930227 TTTTTTAAAACTATATAATATGTTTTCAAAAACTATATCATATGTTT
1 TTTTTTAAAACTATATAATATATTTTCAAAAACTATAT-ATATGTTT
1930274 TTTTTTAAAACTATACT-ATATATTTTTCAAAAA-TCATATATTAT-TTT
1 TTTTTTAAAACTATA-TAATATA-TTTTCAAAAACT-ATATA-TATGTTT
*** *
1930321 TTTGACAAAACTATATATTATAT
1 TTTTTTAAAACTATATAATATAT
1930344 ATTATCATAT
Statistics
Matches: 177, Mismatches: 16, Indels: 39
0.76 0.07 0.17
Matches are distributed among these distances:
42 1 0.01
43 19 0.11
44 5 0.03
45 2 0.01
46 14 0.08
47 56 0.32
48 27 0.15
49 6 0.03
50 46 0.26
51 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (46 bp):
TTTTTTAAAACTATATAATATATTTTCAAAAACTATATATATGTTT
Found at i:1930192 original size:93 final size:92
Alignment explanation
Indices: 1930040--1930317 Score: 307
Period size: 93 Copynumber: 2.9 Consensus size: 92
1930030 ATATATCATA
* * * * *
1930040 TTTTCAAAAC-ATATAACATGTTTTCAAAATTA-TATAACA-ATATGTTTTTAAAAATTATACTA
1 TTTTTAAAACTATATAATATGTTTTCAAAA--ACTATATCATATATATTTTT-AAAACTATACTA
1930102 TATATTTTCAAAAATTATATATTATATGTTTT
63 TATATTTTCAAAAATTATATATTATATG--TT
*
1930134 TTTTCTAAAACTATATAATACT-TTTTCAAAAACTATA-C-TATATATTTTTAAAACTATACAAT
1 TTTT-TAAAACTATATAATA-TGTTTTCAAAAACTATATCATATATATTTTTAAAACTATACTAT
*
1930196 ATATTTTCAAAAAAAACTATATATTATATGTT
64 ATATTTTC---AAAAATTATATATTATATGTT
* *
1930228 TTTTTAAAACTATATAATATGTTTTCAAAAACTATATCATATGTTTTTTTTTAAAACTATACTAT
1 TTTTTAAAACTATATAATATGTTTTCAAAAACTATATCATA--TATATTTTTAAAACTATACTAT
*
1930293 ATATTTTTCAAAAATCATATATTAT
64 ATA-TTTTCAAAAATTATATATTAT
1930318 TTTTTTGACA
Statistics
Matches: 159, Mismatches: 11, Indels: 27
0.81 0.06 0.14
Matches are distributed among these distances:
92 1 0.01
93 49 0.31
94 22 0.14
95 25 0.16
96 34 0.21
97 23 0.14
98 5 0.03
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.46
Consensus pattern (92 bp):
TTTTTAAAACTATATAATATGTTTTCAAAAACTATATCATATATATTTTTAAAACTATACTATAT
ATTTTCAAAAATTATATATTATATGTT
Found at i:1930236 original size:25 final size:23
Alignment explanation
Indices: 1930208--1930343 Score: 102
Period size: 25 Copynumber: 5.7 Consensus size: 23
1930198 ATTTTCAAAA
*
1930208 AAAACTATATATTATATGTTTTTTT
1 AAAACTATATA-TATAT-TTTTTTC
*
1930233 AAAACTATATA-ATA-TGTTTTC
1 AAAACTATATATATATTTTTTTC
* *
1930254 AAAAACTATATCATATGTTTTTTTTT
1 -AAAACTATAT-ATAT-ATTTTTTTC
1930280 AAAACTATACTATATA--TTTTTC
1 AAAACTATA-TATATATTTTTTTC
*
1930302 AAAAATCATATAT-TATTTTTTTGAC
1 AAAACT-ATATATATATTTTTTT--C
1930327 AAAACTATATATTATAT
1 AAAACTATATA-TATAT
1930344 ATTATCATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 25
0.72 0.07 0.20
Matches are distributed among these distances:
21 7 0.08
22 23 0.26
23 12 0.13
24 7 0.08
25 31 0.35
26 9 0.10
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (23 bp):
AAAACTATATATATATTTTTTTC
Found at i:1930258 original size:22 final size:22
Alignment explanation
Indices: 1930040--1930274 Score: 135
Period size: 22 Copynumber: 10.2 Consensus size: 22
1930030 ATATATCATA
*
1930040 TTTTC-AAAAC-ATATAACATG
1 TTTTCAAAAACTATATAATATG
*
1930060 TTTTCAAAATTA-TATAACAATATG
1 TTTTCAAAA--ACTAT-ATAATATG
* * *
1930084 TTTTTAAAAATTATACT-ATATA
1 TTTTCAAAAACTATA-TAATATG
*
1930106 TTTTCAAAAATTATATATTATATG
1 TTTTCAAAAACTATATA--ATATG
*
1930130 TTTTTTTTCTAAAACTATATAATACT-
1 ----TTTTCAAAAACTATATAATA-TG
1930156 TTTTCAAAAACTATACTATATAT-
1 TTTTCAAAAACTATA-TA-ATATG
* *
1930179 TTTT--AAAACTATACAATATA
1 TTTTCAAAAACTATATAATATG
1930199 TTTTCAAAAAAAACTATATATTATATG
1 TTTTC---AAAAACTATATA--ATATG
**
1930226 TTTTTTTAAAACTATATAATATG
1 -TTTTCAAAAACTATATAATATG
*
1930249 TTTTCAAAAACTATATCATATG
1 TTTTCAAAAACTATATAATATG
1930271 TTTT
1 TTTT
1930275 TTTTTAAAAC
Statistics
Matches: 171, Mismatches: 18, Indels: 50
0.72 0.08 0.21
Matches are distributed among these distances:
19 4 0.02
20 10 0.06
21 13 0.08
22 57 0.33
23 18 0.11
24 21 0.12
25 21 0.12
26 3 0.02
27 5 0.03
28 19 0.11
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (22 bp):
TTTTCAAAAACTATATAATATG
Found at i:1930305 original size:22 final size:23
Alignment explanation
Indices: 1930079--1930321 Score: 136
Period size: 22 Copynumber: 10.4 Consensus size: 23
1930069 TTATATAACA
* *
1930079 ATATGTTTTT-AAAAATTATACT
1 ATATATTTTTCAAAAACTATACT
*
1930101 ATATA-TTTTCAAAAATTATA-T
1 ATATATTTTTCAAAAACTATACT
*
1930122 ATTATATGTTTTTTTTCTAAAACTATA-T
1 A-TATA-----TTTTTCAAAAACTATACT
1930150 A-ATACTTTTTCAAAAACTATACT
1 ATATA-TTTTTCAAAAACTATACT
*
1930173 ATATATTTTT--AAAACTATACA
1 ATATATTTTTCAAAAACTATACT
1930194 ATATA-TTTTCAAAAAAAACTATA-T
1 ATATATTTTTC---AAAAACTATACT
**
1930218 ATTATATGTTTTTTTAAAACTATA-T
1 A-TATA--TTTTTCAAAAACTATACT
1930243 A-ATATGTTTTCAAAAACTATATCAT
1 ATATAT-TTTTCAAAAACTATA-C-T
* * **
1930268 ATGTTTTTTTTTAAAACTATACT
1 ATATATTTTTCAAAAACTATACT
1930291 ATATATTTTTCAAAAA-TCATA-T
1 ATATATTTTTCAAAAACT-ATACT
1930313 AT-TATTTTT
1 ATATATTTTT
1930322 TTGACAAAAC
Statistics
Matches: 177, Mismatches: 19, Indels: 51
0.72 0.08 0.21
Matches are distributed among these distances:
20 4 0.02
21 29 0.16
22 50 0.28
23 26 0.15
24 5 0.03
25 39 0.22
26 5 0.03
28 19 0.11
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATATTTTTCAAAAACTATACT
Found at i:1930322 original size:23 final size:22
Alignment explanation
Indices: 1930263--1930341 Score: 58
Period size: 22 Copynumber: 3.5 Consensus size: 22
1930253 CAAAAACTAT
*
1930263 ATCATATGTT-TTTTTTTAAAA
1 ATCATATATTATTTTTTTAAAA
* *
1930284 CT-ATACTA-TATATTTTTCAAAA
1 ATCATA-TATTAT-TTTTTTAAAA
1930306 ATCATATATTATTTTTTTGACAAA
1 ATCATATATTATTTTTTT-A-AAA
1930330 A-CTATATATTAT
1 ATC-ATATATTAT
1930342 ATATTATCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.09
21 3 0.07
22 17 0.38
23 8 0.18
24 13 0.29
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.51
Consensus pattern (22 bp):
ATCATATATTATTTTTTTAAAA
Found at i:1940659 original size:21 final size:20
Alignment explanation
Indices: 1940635--1940676 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
1940625 GTCATACAAC
*
1940635 TAATAATAGTTGTATAATGCA
1 TAATAATAGTT-CATAATGCA
*
1940656 TAATAATGGTTCATAATGCA
1 TAATAATAGTTCATAATGCA
1940676 T
1 T
1940677 TGTAAGTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (20 bp):
TAATAATAGTTCATAATGCA
Found at i:1945629 original size:37 final size:37
Alignment explanation
Indices: 1945579--1945717 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
1945569 GAGTCGAGGG
* * *
1945579 TTACCT-TCGTTCTTCGGGACAGATGGACAGTTACAAA
1 TTACCTAT-GTTCTTCGGGACATATGGACAGTTATAGA
1945616 TTACCTATGTTCTTCGGGACATATGGACAGTTATAGA
1 TTACCTATGTTCTTCGGGACATATGGACAGTTATAGA
*
1945653 TTACCTATGCTCTTCGGGACATATGGACAGTTATAGA
1 TTACCTATGTTCTTCGGGACATATGGACAGTTATAGA
1945690 TTACCTATGTTCTTCGGGACATATGGAC
1 TTACCTATGTTCTTCGGGACATATGGAC
1945718 TGATTACCAA
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
37 95 0.99
38 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (37 bp):
TTACCTATGTTCTTCGGGACATATGGACAGTTATAGA
Found at i:1951488 original size:15 final size:15
Alignment explanation
Indices: 1951468--1951496 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1951458 TTGAGTATAC
1951468 CCTTGAGCAACAAGG
1 CCTTGAGCAACAAGG
1951483 CCTTGAGCAACAAG
1 CCTTGAGCAACAAG
1951497 TCTAGCCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.14
Consensus pattern (15 bp):
CCTTGAGCAACAAGG
Found at i:1955757 original size:64 final size:65
Alignment explanation
Indices: 1955689--1955848 Score: 256
Period size: 65 Copynumber: 2.5 Consensus size: 65
1955679 TGAACCAAGG
1955689 GTGCATCGATGCATAAAATGCATTCGATGTTTT-A-AAATAGT-CTAAGTGCATCGATGCATGGC
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-A-TCCTAAGTGCATCGATGCATGG-
1955751 T-T
63 TAT
*
1955753 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAATCCTGAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAATCCTAAGTGCATCGATGCATGGTAT
1955818 GTGCATCGATGCATAAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
1955849 CAATTTATTC
Statistics
Matches: 91, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
64 35 0.38
65 53 0.58
66 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAATCCTAAGTGCATCGATGCATGGTAT
Found at i:1955887 original size:65 final size:64
Alignment explanation
Indices: 1955689--1955890 Score: 243
Period size: 65 Copynumber: 3.1 Consensus size: 64
1955679 TGAACCAAGG
* * *
1955689 GTGCATCGATGCATAAAATGCATTCGATGTTTTAAAATAGTCTAA--GTGCATCGATGCATGGCT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATAATC-AATGGTGCATCGATGCATGG-T
1955752 T
64 T
* *
1955753 GTGCATCGATGCATAAAATGCATTCGATGTTTTC-ATAAAATC-CTGAGTGCATCGATGCATGGT
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAATATAATCAATG-GTGCATCGATGCATGGT
1955816 AT
64 -T
* *
1955818 GTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTATTCAATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATAATCAATGGTGCATCGATGCATGG-TT
1955882 GGTGCATCG
1 -GTGCATCG
1955891 GTACACTCTT
Statistics
Matches: 120, Mismatches: 9, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
63 3 0.03
64 57 0.47
65 60 0.50
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATAATCAATGGTGCATCGATGCATGGTT
Found at i:1956394 original size:19 final size:19
Alignment explanation
Indices: 1956370--1956434 Score: 103
Period size: 19 Copynumber: 3.4 Consensus size: 19
1956360 TTCACAGTAA
1956370 TGTTCATACAGTATAATAT
1 TGTTCATACAGTATAATAT
*
1956389 TGTTCATACAGTATAATAC
1 TGTTCATACAGTATAATAT
* *
1956408 TGTTCATACCGTATATTAT
1 TGTTCATACAGTATAATAT
1956427 TGTTCATA
1 TGTTCATA
1956435 AAATCGTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (19 bp):
TGTTCATACAGTATAATAT
Found at i:1958891 original size:15 final size:16
Alignment explanation
Indices: 1958871--1958911 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1958861 GTTTACTTCA
*
1958871 GAATGATT-AAGCGTT
1 GAATGATTCAAACGTT
*
1958886 GAATGATTCAAATGTT
1 GAATGATTCAAACGTT
1958902 GAATGATTCA
1 GAATGATTCA
1958912 GAGGCTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (16 bp):
GAATGATTCAAACGTT
Found at i:1961984 original size:72 final size:72
Alignment explanation
Indices: 1961844--1961989 Score: 161
Period size: 72 Copynumber: 2.0 Consensus size: 72
1961834 ATGAGATTGA
* * * * * * **
1961844 CATAAATAAAATTTTAGGATGAACATCATCAATAAAATAAGTAATTAATCGAATAAATTTTGAGT
1 CATAAATAAAATTTCAGGATGAACAACATCAATAAAATAAGTAACTAACCAAAAAAATTCAGAGT
*
1961909 TTCATGG
66 TTCAAGG
* *
1961916 CATAAATAAAATTTCATGG-TGGACAACATCAATAAAATAGGTAACTAACCAAAGAAAATTCAGA
1 CATAAATAAAATTTCA-GGATGAACAACATCAATAAAATAAGTAACTAACCAAA-AAAATTCAGA
1961980 -TTTCAAGG
64 GTTTCAAGG
1961988 CA
1 CA
1961990 AGCACGTGAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
72 52 0.85
73 9 0.15
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (72 bp):
CATAAATAAAATTTCAGGATGAACAACATCAATAAAATAAGTAACTAACCAAAAAAATTCAGAGT
TTCAAGG
Found at i:1965078 original size:20 final size:20
Alignment explanation
Indices: 1965053--1965094 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
1965043 CTTGGAAAGA
1965053 TTATTCAGTTCTTAAAATGG
1 TTATTCAGTTCTTAAAATGG
1965073 TTATTCAGTTCTTAAAATGG
1 TTATTCAGTTCTTAAAATGG
1965093 TT
1 TT
1965095 TAGATCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (20 bp):
TTATTCAGTTCTTAAAATGG
Found at i:1969958 original size:50 final size:50
Alignment explanation
Indices: 1969899--1969997 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
1969889 TTATCATTTT
* * *
1969899 TTTAATTAATATGAGATAAGTACGAGATAATATATATTCAAAGATAATTA
1 TTTAATTAATATGAGATAAATACAAAATAATATATATTCAAAGATAATTA
* *
1969949 TTTAATTAATATTAGATAAATACAAAATAATATATGTTCAAAGATAATT
1 TTTAATTAATATGAGATAAATACAAAATAATATATATTCAAAGATAATT
1969998 CTCAACTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.37
Consensus pattern (50 bp):
TTTAATTAATATGAGATAAATACAAAATAATATATATTCAAAGATAATTA
Found at i:1975642 original size:26 final size:26
Alignment explanation
Indices: 1975604--1975653 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1975594 TATTGGTGGG
1975604 GTGGAAATGGGAGGAGATAGGGAGAC
1 GTGGAAATGGGAGGAGATAGGGAGAC
* *
1975630 GTGGAAATTGGAGGAGATGGGGAG
1 GTGGAAATGGGAGGAGATAGGGAG
1975654 GGAAGTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.02, G:0.52, T:0.14
Consensus pattern (26 bp):
GTGGAAATGGGAGGAGATAGGGAGAC
Found at i:1977585 original size:33 final size:33
Alignment explanation
Indices: 1977547--1977692 Score: 156
Period size: 32 Copynumber: 4.5 Consensus size: 33
1977537 TTTTTGATCA
*
1977547 AGTCGGGTCGAGTTTTTTTAAGTTTGATATTCG
1 AGTCGGGTCGAGTTTTTTTAAGTGTGATATTCG
* * *
1977580 AGTCGGGTCG-GGTTTTTTAAGTTTGATATTTG
1 AGTCGGGTCGAGTTTTTTTAAGTGTGATATTCG
*
1977612 GGTCGGGTCG-GTTTTTTTAAGTGTGATATTCG
1 AGTCGGGTCGAGTTTTTTTAAGTGTGATATTCG
* **
1977644 GGTTTGGTC-AGGTTTTTTTAAGTGTGATATTCTG
1 AGTCGGGTCGA-GTTTTTTTAAGTGTGATATTC-G
*
1977678 -GTCAGGTTCGAGTTT
1 AGTC-GGGTCGAGTTT
1977693 AGGGTGAAAA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
32 55 0.57
33 33 0.34
34 8 0.08
35 1 0.01
ACGTcount: A:0.15, C:0.08, G:0.31, T:0.46
Consensus pattern (33 bp):
AGTCGGGTCGAGTTTTTTTAAGTGTGATATTCG
Found at i:1977601 original size:32 final size:32
Alignment explanation
Indices: 1977547--1977675 Score: 168
Period size: 32 Copynumber: 4.0 Consensus size: 32
1977537 TTTTTGATCA
*
1977547 AGTCGGGTCGAGTTTTTTTAAGTTTGATATTCG
1 AGTCGGGTCG-GTTTTTTTAAGTGTGATATTCG
* * *
1977580 AGTCGGGTCGGGTTTTTTAAGTTTGATATTTG
1 AGTCGGGTCGGTTTTTTTAAGTGTGATATTCG
*
1977612 GGTCGGGTCGGTTTTTTTAAGTGTGATATTCG
1 AGTCGGGTCGGTTTTTTTAAGTGTGATATTCG
* **
1977644 GGTTTGGTCAGGTTTTTTTAAGTGTGATATTC
1 AGTCGGGTC-GGTTTTTTTAAGTGTGATATTC
1977676 TGGTCAGGTT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
32 55 0.63
33 32 0.37
ACGTcount: A:0.16, C:0.08, G:0.30, T:0.47
Consensus pattern (32 bp):
AGTCGGGTCGGTTTTTTTAAGTGTGATATTCG
Found at i:1977643 original size:64 final size:66
Alignment explanation
Indices: 1977548--1977692 Score: 188
Period size: 65 Copynumber: 2.2 Consensus size: 66
1977538 TTTTGATCAA
* *
1977548 GTCGGGTCGAGTTTTTTTAAGTTTGATATTCGAGTCGGGTC-GGGTTTTTTAAGTTTGATATTTG
1 GTCGGGTCGAGTTTTTTTAAGTGTGATATTCGAGTCGGGTCAGGGTTTTTTAAGTGTGATATTTG
1977612 G
66 G
* ** *
1977613 GTCGGGTCG-GTTTTTTTAAGTGTGATATTCGGGTTTGGTCAGGTTTTTTTAAGTGTGATATTCT
1 GTCGGGTCGAGTTTTTTTAAGTGTGATATTCGAGTCGGGTCAGGGTTTTTTAAGTGTGATATT-T
1977677 -G
65 GG
*
1977678 GTCAGGTTCGAGTTT
1 GTC-GGGTCGAGTTT
1977693 AGGGTGAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
64 27 0.39
65 32 0.46
66 6 0.09
67 4 0.06
ACGTcount: A:0.14, C:0.08, G:0.31, T:0.46
Consensus pattern (66 bp):
GTCGGGTCGAGTTTTTTTAAGTGTGATATTCGAGTCGGGTCAGGGTTTTTTAAGTGTGATATTTG
G
Found at i:1977914 original size:26 final size:26
Alignment explanation
Indices: 1977878--1977941 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
1977868 TTCGAGTCGA
1977878 GTCGGGTCGGGTGAAACTTTATTTTG
1 GTCGGGTCGGGTGAAACTTTATTTTG
1977904 GTCGGGTCGGGTGAAACTTTATTTTG
1 GTCGGGTCGGGTGAAACTTTATTTTG
1977930 GTCGGGTCGGGT
1 GTCGGGTCGGGT
1977942 CTCGGGTGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.12, C:0.12, G:0.39, T:0.36
Consensus pattern (26 bp):
GTCGGGTCGGGTGAAACTTTATTTTG
Found at i:1980701 original size:14 final size:14
Alignment explanation
Indices: 1980684--1980723 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
1980674 TCCTCTTTTT
1980684 TTATTTATATTATA
1 TTATTTATATTATA
*
1980698 TTATTTTTATTATA
1 TTATTTATATTATA
1980712 TATATCTTATAT
1 T-TAT-TTATAT
1980724 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:1980807 original size:12 final size:12
Alignment explanation
Indices: 1980788--1980818 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1980778 TTCTTAATAT
1980788 TATA-TTTTATA
1 TATATTTTTATA
1980799 TATATTTTTATA
1 TATATTTTTATA
1980811 TATATTTT
1 TATATTTT
1980819 CTTGATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTTTTATA
Found at i:1983621 original size:22 final size:21
Alignment explanation
Indices: 1983590--1983631 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1983580 ATCAGAACAA
1983590 AAAGAAAAAAGAGAAAAAAAGT
1 AAAGAAAAAAGA-AAAAAAAGT
* *
1983612 AAAGAGAAAATAAAAAAAAG
1 AAAGAAAAAAGAAAAAAAAG
1983632 GAAAATTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (21 bp):
AAAGAAAAAAGAAAAAAAAGT
Found at i:1983635 original size:15 final size:16
Alignment explanation
Indices: 1983594--1983637 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
1983584 GAACAAAAAG
1983594 AAAAAAGAGAAAA-AA
1 AAAAAAGAGAAAATAA
**
1983609 AGTAAAGAGAAAATAA
1 AAAAAAGAGAAAATAA
1983625 AAAAAAG-GAAAAT
1 AAAAAAGAGAAAAT
1983638 TGAAGAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAAAGAGAAAATAA
Found at i:1983830 original size:69 final size:69
Alignment explanation
Indices: 1983718--1983846 Score: 222
Period size: 69 Copynumber: 1.9 Consensus size: 69
1983708 TGTGAGATTG
* *
1983718 ATCAAGCACAATCATTTTCGAATCACTGAATCACTTCAGTCGAAAATCATAGAGCATCAAATGAT
1 ATCAAGCACAATCATTTCCGAATCACTGAATCACTTCACTCGAAAATCATAGAGCATCAAATGAT
1983783 ATTA
66 ATTA
* *
1983787 ATCAAGCACAATCATTTCCGAATCACTGAATCACTTCACTCGAAGATTATAGAGCATCAA
1 ATCAAGCACAATCATTTCCGAATCACTGAATCACTTCACTCGAAAATCATAGAGCATCAA
1983847 GAGAGAGACA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (69 bp):
ATCAAGCACAATCATTTCCGAATCACTGAATCACTTCACTCGAAAATCATAGAGCATCAAATGAT
ATTA
Found at i:1984357 original size:15 final size:15
Alignment explanation
Indices: 1984337--1984373 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
1984327 CAAGATACCC
*
1984337 CATCAAACCTTTTAG
1 CATCAAACCTTTGAG
1984352 CATCAAACCTTTGAG
1 CATCAAACCTTTGAG
1984367 CATCAAA
1 CATCAAA
1984374 TAAACAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (15 bp):
CATCAAACCTTTGAG
Found at i:1984840 original size:32 final size:32
Alignment explanation
Indices: 1984798--1984883 Score: 127
Period size: 32 Copynumber: 2.7 Consensus size: 32
1984788 GCATCTTTGA
* *
1984798 AGATTCAACATCAAATGTTGGGGTATTTTTTT
1 AGATTAAACATCAAATGTTGGGGCATTTTTTT
*
1984830 AGATTTAACATCAAATGTTGGGGCATTTTTTT
1 AGATTAAACATCAAATGTTGGGGCATTTTTTT
* *
1984862 AGATTAAACATCGAATATTGGG
1 AGATTAAACATCAAATGTTGGG
1984884 ACATCTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (32 bp):
AGATTAAACATCAAATGTTGGGGCATTTTTTT
Found at i:1985585 original size:106 final size:106
Alignment explanation
Indices: 1985462--1985783 Score: 482
Period size: 106 Copynumber: 3.0 Consensus size: 106
1985452 ATATCGTGCC
*
1985462 ACTCGAGACAACACAAGTTCAACTCCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
*
1985527 AATTTCAGAGCCAATTTCAACTTCACACCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
1985568 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAATAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
*
1985633 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * ** **
1985674 ACTTGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAATTTCTT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
* * * * *
1985739 AGTTCCAGAGCCAATTTTAACTTCACAGCGGAGGATATCGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
1985780 ACTC
1 ACTC
1985784 AGAACAATAC
Statistics
Matches: 195, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
106 195 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:1986040 original size:37 final size:37
Alignment explanation
Indices: 1985989--1986059 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
1985979 TATCTTTTCC
*
1985989 TTGAAACAAATTTTGTCTCCCTTGAGACATTTTCTTT
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTT
* * *
1986026 TTGAACCAAGTTTTGTCTCTCTTGAGACAGTTTC
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTC
1986060 CATTGAGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.44
Consensus pattern (37 bp):
TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTTT
Found at i:1986066 original size:52 final size:52
Alignment explanation
Indices: 1986010--1986117 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
1986000 TTTGTCTCCC
*
1986010 TTGAGACATTTTCTTTTTGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCA
1 TTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCA
* * *
1986062 TTGAGATATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCC
1 TTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCA
1986114 TTGA
1 TTGA
1986118 AACAAAATCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.20, C:0.18, G:0.17, T:0.45
Consensus pattern (52 bp):
TTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCA
Found at i:1986129 original size:52 final size:52
Alignment explanation
Indices: 1986021--1986129 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 52
1986011 TGAGACATTT
* * * ***
1986021 TCTTTTTGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCATTGAGATATTT
1 TCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCATTGAAACAAAA
* *
1986073 TCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA
1 TCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCATTGAAACAAAA
1986125 TCTTT
1 TCTTT
1986130 GAATATCTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.44
Consensus pattern (52 bp):
TCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCCATTGAAACAAAA
Found at i:1986131 original size:102 final size:98
Alignment explanation
Indices: 1986058--1986252 Score: 259
Period size: 102 Copynumber: 1.9 Consensus size: 98
1986048 TGAGACAGTT
*
1986058 TCCATTGAGATATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-
1 TCCATTGAGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAT
*
1986122 AAATCTTTGAATATCTTTTCCTTGAAACAAATTTCGTC
66 AAA-CTTTGAAAATCTTTTCCTTGAAAC-AA--T-GTC
* * * *
1986160 TCCCTTGAGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAGCAT
1 TCCATTGAGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAT
*
1986225 AAACTTTGAAAA-CATTTCCCTTGAAACA
66 AAACTTTGAAAATC-TTTTCCTTGAAACA
1986253 CAAAATATTT
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
101 2 0.02
102 79 0.94
103 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (98 bp):
TCCATTGAGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAT
AAACTTTGAAAATCTTTTCCTTGAAACAATGTC
Found at i:1986191 original size:154 final size:154
Alignment explanation
Indices: 1985931--1986213 Score: 521
Period size: 154 Copynumber: 1.8 Consensus size: 154
1985921 GACAATTTCC
1985931 AAGTTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
1 AAGTTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
* *
1985996 AAATTTTGTCTCCCTTGAGACATTTTCTTTTTGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCC
66 AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCC
1986061 ATTGAGATATTTTCTTTTGGAACT
131 ATTGAGATATTTTCTTTTGGAACT
*
1986085 AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
1 AAGTTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
* *
1986150 AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTC
66 AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTC
1986214 TCTTGAAGCA
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
154 124 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.43
Consensus pattern (154 bp):
AAGTTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAAC
AAATTTCGTCTCCCTTGAGACATTTTCTTTTGGAACCAAGTTTTGTCTCTCTTGAGACAGTTTCC
ATTGAGATATTTTCTTTTGGAACT
Found at i:1986395 original size:65 final size:65
Alignment explanation
Indices: 1986273--1986415 Score: 198
Period size: 65 Copynumber: 2.2 Consensus size: 65
1986263 GAATCAGTTC
1986273 CCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTT
1 CCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTT
** * * ****
1986338 CCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAATCTTTGAATTTGTT
1 CCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAA-CATTGAAAACATT
1986402 T
65 T
1986403 CCCTTGAAACAAA
1 CCCTTGAAACAAA
1986416 ATCGTTGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
64 3 0.04
65 64 0.96
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (65 bp):
CCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTT
Found at i:1986402 original size:29 final size:29
Alignment explanation
Indices: 1986370--1986444 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
1986360 TCTTGAGACA
* * *
1986370 GTTTCTCTTGAAACAAAATCTTTGAATTT
1 GTTTCCCTTGAAACAAAATCGTTGAATCT
1986399 GTTTCCCTTGAAACAAAATCGTTGAATCT
1 GTTTCCCTTGAAACAAAATCGTTGAATCT
1986428 GTTTCCCTTGAAACAAA
1 GTTTCCCTTGAAACAAA
1986445 TTTCGTCTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (29 bp):
GTTTCCCTTGAAACAAAATCGTTGAATCT
Found at i:1986457 original size:292 final size:292
Alignment explanation
Indices: 1986104--1986705 Score: 937
Period size: 292 Copynumber: 2.1 Consensus size: 292
1986094 CTCTCTTGAG
* *
1986104 ACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAACAAATTTCGTCTCCCTTGAG
1 ACAGTTTCCCTTGAAACAAAATCGTTGAATATCTTTCCCTTGAAACAAATTTCGTCTCCCTTGAG
* * * *
1986169 ACATTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAGCATAAACTTTGA
66 ACATTTTCTGTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTAA
1986234 AAACATTTCCCTTGAAACACAAAATATTTGA-ATCA-GTTCCCCTTGAAAC-AAATTTTGTCTCC
131 AAACATTTCCCTTG-AA-A-AAAAT-TTTGAGAT-AGGTT-CCCTTGAAACAAAATTTTGTCTCC
1986296 CTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTT-GTCTC
190 CTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGGTCTC
*
1986360 TCTTGAGACAGTTTCTCTTGAAAC-AAAATCTTTGAAT
255 TCTTGAGACAGTTTCCCTTGAAACTAAAATCTTTGAAT
** * *
1986397 -TTGTTTCCCTTGAAACAAAATCGTTGAATCTGTTTCCCTTGAAACAAATTTCGTCTCCCTTGAG
1 ACAGTTTCCCTTGAAACAAAATCGTTGAATATCTTTCCCTTGAAACAAATTTCGTCTCCCTTGAG
* *
1986461 ACATTTTCTGTTGGAACTAAGTTTTTTTTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTAA
66 ACATTTTCTGTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTAA
**
1986526 AAACATTTCCCTTGAAATGAATTTTGAGATAGGTTCCCTTGAAACAAAATTTTGTCTCCCTTGAG
131 AAACATTTCCCTTGAAAAAAATTTTGAGATAGGTTCCCTTGAAACAAAATTTTGTCTCCCTTGAG
*
1986591 GCAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGGTCTCTCTTGA
196 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGGTCTCTCTTGA
**
1986656 GACAGTTTCCCTTGAAACTTCAATCTTTGAAT
261 GACAGTTTCCCTTGAAACTAAAATCTTTGAAT
*
1986688 ACAGTTTCTCTTGAAACA
1 ACAGTTTCCCTTGAAACA
1986706 GAAAAAACCT
Statistics
Matches: 282, Mismatches: 21, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
288 16 0.06
289 79 0.28
290 29 0.10
291 13 0.05
292 145 0.51
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (292 bp):
ACAGTTTCCCTTGAAACAAAATCGTTGAATATCTTTCCCTTGAAACAAATTTCGTCTCCCTTGAG
ACATTTTCTGTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTAA
AAACATTTCCCTTGAAAAAAATTTTGAGATAGGTTCCCTTGAAACAAAATTTTGTCTCCCTTGAG
ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGGTCTCTCTTGA
GACAGTTTCCCTTGAAACTAAAATCTTTGAAT
Found at i:1986535 original size:131 final size:130
Alignment explanation
Indices: 1986358--1986599 Score: 292
Period size: 131 Copynumber: 1.9 Consensus size: 130
1986348 GAATTTTGTC
* * ****
1986358 TCTCTTGAGACAGTTTCTCTTGAAACAAAATCTTTGAATTTGTTTCCCTTGAAACAAAATCGTTG
1 TCTCTTGAGACAGTTTCTCTTGAAACAAAATCATTAAAAACATTTCCCTTGAAA-AAAAT-GTTG
* * *
1986423 A-ATCTGTTTCCCTTGAAAC-AAATTTCGTCTCCCTTGAGACATTTTCTGTTGGAACTAAGTTTT
64 AGAT-AGGTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTGTTGGAACTAAGTTTT
1986486 TTT
128 TTT
* ** *
1986489 TCTCTTGAGATAGTTTCTCTTGAAACATAAA-CATTAAAAACATTTCCCTTGAAATGAATTTTGA
1 TCTCTTGAGACAGTTTCTCTTGAAACA-AAATCATTAAAAACATTTCCCTTGAAAAAAATGTTGA
* *
1986553 GATAGGTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGGCAGTTTCT
65 GATAGGTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCT
1986600 CTTGAAACAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
129 17 0.18
130 30 0.32
131 43 0.46
132 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (130 bp):
TCTCTTGAGACAGTTTCTCTTGAAACAAAATCATTAAAAACATTTCCCTTGAAAAAAATGTTGAG
ATAGGTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTGTTGGAACTAAGTTTTTTT
Found at i:1986763 original size:36 final size:34
Alignment explanation
Indices: 1986691--1986774 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 34
1986681 TTTGAATACA
*
1986691 GTTTCTCTTGAAAC-AGAAAAAACCTTTAAAATT
1 GTTTCTCTTGAAACAAAAAAAAACCTTTAAAATT
1986724 GTTTCTCTTGAAACATAAAAAAAAACCTTTGAAAA-T
1 GTTTCTCTTGAAAC--AAAAAAAAACCTTT-AAAATT
1986760 GTTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
1986775 CCAAACCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
33 14 0.30
34 1 0.02
36 27 0.59
37 4 0.09
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (34 bp):
GTTTCTCTTGAAACAAAAAAAAACCTTTAAAATT
Found at i:1988033 original size:14 final size:14
Alignment explanation
Indices: 1988016--1988055 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
1988006 TTCCTCTTTT
1988016 TTATTTATATTATA
1 TTATTTATATTATA
*
1988030 TTATTTTTATTATA
1 TTATTTATATTATA
1988044 TATATCTTATAT
1 T-TAT-TTATAT
1988056 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:1988083 original size:23 final size:20
Alignment explanation
Indices: 1988020--1988083 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 20
1988010 TCTTTTTTAT
*
1988020 TTATAT-TATATTATTTTTA
1 TTATATATATATTATTATTA
* *
1988039 TTATATATATCTTA-TATCA
1 TTATATATATATTATTATTA
1988058 TTATATATATATATATGTATGTA
1 TTATATATATAT-TAT-TAT-TA
1988081 TTA
1 TTA
1988084 ATGTTTCTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 20 0.57
20 8 0.23
22 3 0.09
23 4 0.11
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
TTATATATATATTATTATTA
Found at i:1988215 original size:17 final size:17
Alignment explanation
Indices: 1988174--1988241 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 17
1988164 TTTTTGTTTG
*
1988174 TATTTATTTATA-TATAT
1 TATTT-TTTATATTATTT
1988191 TATATTTTTACT-TTATTT
1 TAT-TTTTTA-TATTATTT
1988209 TATTTTTTATATTATTT
1 TATTTTTTATATTATTT
1988226 T-TTTTCTTAATATTAT
1 TATTTT-TT-ATATTAT
1988242 GTATATCTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
16 5 0.11
17 22 0.50
18 17 0.39
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTATATTATTT
Found at i:1988294 original size:36 final size:37
Alignment explanation
Indices: 1988220--1988304 Score: 113
Period size: 36 Copynumber: 2.3 Consensus size: 37
1988210 ATTTTTTATA
*
1988220 TTATTT-TTTTTCTTAATATTATGTATATCTTTATTTT
1 TTATTTGTTTTACTTAATATTA-GTATATCTTTATTTT
*
1988257 TTATTTGTTTTACTTAATATTA-TATATTTATTA-TTT
1 TTATTTGTTTTACTTAATATTAGTATATCT-TTATTTT
1988293 TTATTTGTTTTA
1 TTATTTGTTTTA
1988305 GTAAATACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
36 21 0.48
37 9 0.20
38 14 0.32
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (37 bp):
TTATTTGTTTTACTTAATATTAGTATATCTTTATTTT
Found at i:1993704 original size:2 final size:2
Alignment explanation
Indices: 1993697--1993722 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1993687 TGATGTTCCC
1993697 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
1993723 ATTGAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1999799 original size:119 final size:119
Alignment explanation
Indices: 1999491--1999853 Score: 488
Period size: 119 Copynumber: 3.1 Consensus size: 119
1999481 TATTGCATAT
* * * *
1999491 TAACCACTAACTTATTTTA--T-TTTGTTCTATTTTTATAAATTTGTTTACATTATTCGATTCGA
1 TAACCACTAACTT-TTTTATTTATTTATTTTATTTTTATATATTTGTTTACATTATTCTATTCGA
* * * * * *
1999553 TCTTGTAGTGACCCGATCCGAGATAAGACCCACATTGTTATGGTTCGGACCCAGC
65 TCTTGTGGTGACCCGATCCGGGGTAAGACCCACATTATTATGGTTCGGACTCTGC
* * **
1999608 TAATCACTAAC---TTT-TTTATTTATTTTATTTTTAAATATTTGTTTACATTATTCTATTCGGC
1 TAACCACTAACTTTTTTATTTATTTATTTTATTTTTATATATTTGTTTACATTATTCTATTCGAT
* * *
1999669 CTTGTGGTGACCCGATTCGGGGTAAAACCCACATTATTATGGTTCGGACTCTCC
66 CTTGTGGTGACCCGATCCGGGGTAAGACCCACATTATTATGGTTCGGACTCTGC
* *
1999723 TAACCACTAACTTTTTTATTTATTTATTTTATTTTTATATATTTGTTTATATTATTCTATTTGAT
1 TAACCACTAACTTTTTTATTTATTTATTTTATTTTTATATATTTGTTTACATTATTCTATTCGAT
*
1999788 CTTGTGGTGACCCGATCCGGGGTAAGACCCACATTATTATGGTTCGGATTCTGC
66 CTTGTGGTGACCCGATCCGGGGTAAGACCCACATTATTATGGTTCGGACTCTGC
1999842 TAACCACTAACT
1 TAACCACTAACT
1999854 GTTAACTTTT
Statistics
Matches: 212, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
113 3 0.01
114 1 0.00
115 91 0.43
117 10 0.05
118 3 0.01
119 104 0.49
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (119 bp):
TAACCACTAACTTTTTTATTTATTTATTTTATTTTTATATATTTGTTTACATTATTCTATTCGAT
CTTGTGGTGACCCGATCCGGGGTAAGACCCACATTATTATGGTTCGGACTCTGC
Found at i:1999908 original size:22 final size:23
Alignment explanation
Indices: 1999880--1999934 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 23
1999870 TACTAACATT
1999880 CTAACTT-TTTTTATTGTTTATA
1 CTAACTTATTTTTATTGTTTATA
*
1999902 CTAACTTTTATTTTTATTGTTTTTA
1 CTAAC--TTATTTTTATTGTTTATA
1999927 CTAACTTA
1 CTAACTTA
1999935 CTAACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.17
23 3 0.10
24 2 0.07
25 19 0.66
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.62
Consensus pattern (23 bp):
CTAACTTATTTTTATTGTTTATA
Found at i:2000074 original size:32 final size:32
Alignment explanation
Indices: 2000014--2000078 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
2000004 TTTTATTTTA
*
2000014 TTTTCTATCACTTTAAATTTTTGTATTTTATT
1 TTTTCTATCACTTTAAATTTTTGCATTTTATT
* *
2000046 TTTTCTGTC-CTTTAATTTTGTTGCATTTTATT
1 TTTTCTATCACTTTAAATTT-TTGCATTTTATT
2000078 T
1 T
2000079 CACTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 9 0.31
32 20 0.69
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (32 bp):
TTTTCTATCACTTTAAATTTTTGCATTTTATT
Found at i:2002053 original size:25 final size:24
Alignment explanation
Indices: 2002021--2002068 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
2002011 TTTATATATA
2002021 ATTAATATAAAAAAAATATAAAAT
1 ATTAATATAAAAAAAATATAAAAT
* **
2002045 ATTATATATATAATTAATATAAAA
1 ATTA-ATATAAAAAAAATATAAAA
2002069 AATATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
ATTAATATAAAAAAAATATAAAAT
Found at i:2002086 original size:2 final size:2
Alignment explanation
Indices: 2002077--2002110 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2002067 AAAATATAAA
2002077 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2002111 AATCGGGACG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2002091 original size:36 final size:36
Alignment explanation
Indices: 2002004--2002092 Score: 139
Period size: 36 Copynumber: 2.5 Consensus size: 36
2001994 CCCGAACCCG
2002004 AAAATATTT-TATATATAATTAATATAAAAAAAATAT
1 AAAATATTTATATATATAATTAATAT-AAAAAAATAT
2002040 AAAATA-TTATATATATAATTAATAT-AAAAAATAT
1 AAAATATTTATATATATAATTAATATAAAAAAATAT
2002074 AAAATATTATATATATATA
1 AAAATATT-TATATATATA
2002093 TATATATATA
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
34 15 0.30
35 3 0.06
36 32 0.64
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (36 bp):
AAAATATTTATATATATAATTAATATAAAAAAATAT
Found at i:2002108 original size:34 final size:34
Alignment explanation
Indices: 2002004--2002090 Score: 147
Period size: 34 Copynumber: 2.5 Consensus size: 34
2001994 CCCGAACCCG
*
2002004 AAAATATTTTATATATAATTAATATAAAAAAAATAT
1 AAAATATTATATATATAATTAATAT--AAAAAATAT
2002040 AAAATATTATATATATAATTAATATAAAAAATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
2002074 AAAATATTATATATATA
1 AAAATATTATATATATA
2002091 TATATATATA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
34 26 0.52
36 24 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (34 bp):
AAAATATTATATATATAATTAATATAAAAAATAT
Found at i:2003683 original size:16 final size:15
Alignment explanation
Indices: 2003644--2003685 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
2003634 CTAAAAGTTA
2003644 AATATTATTTTAAAT
1 AATATTATTTTAAAT
2003659 AAT-TATATTTTACAAT
1 AATAT-TATTTTA-AAT
2003675 AATATTATTTT
1 AATATTATTTT
2003686 TTTTCTCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.42
16 12 0.50
17 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATTATTTTAAAT
Found at i:2013054 original size:12 final size:12
Alignment explanation
Indices: 2013037--2013061 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2013027 CTTCTAACAA
2013037 AACTGAAGTCAC
1 AACTGAAGTCAC
2013049 AACTGAAGTCAC
1 AACTGAAGTCAC
2013061 A
1 A
2013062 GGAGTGGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (12 bp):
AACTGAAGTCAC
Found at i:2014190 original size:90 final size:89
Alignment explanation
Indices: 2014076--2014250 Score: 305
Period size: 90 Copynumber: 2.0 Consensus size: 89
2014066 TCCCGAATAT
* * *
2014076 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGATTAG
2014141 GGTAACTTGGATATAAAAGGATTA
66 GGTAACTTGGATATAAAAGGATTA
2014165 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGATTA
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGATTA
*
2014230 GGGTAACTTGGCTATAAAAGG
65 GGGTAACTTGGATATAAAAGG
2014251 GTGTGTTAGG
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 7 0.09
90 74 0.91
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGATTAG
GGTAACTTGGATATAAAAGGATTA
Found at i:2017714 original size:21 final size:21
Alignment explanation
Indices: 2017685--2017724 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2017675 CAAATTCTGG
*
2017685 TCAAAGTGTATCGATGCACAT
1 TCAAAGTGTACCGATGCACAT
*
2017706 TCAATGTGTACCGATGCAC
1 TCAAAGTGTACCGATGCAC
2017725 TCTTTAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
TCAAAGTGTACCGATGCACAT
Found at i:2017866 original size:24 final size:20
Alignment explanation
Indices: 2017839--2017896 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
2017829 GCATGGGTAG
2017839 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
2017863 TGCATCGATACACTGTAGAA
1 TGCATCGATGCACTGTAGAA
*
2017883 TGTATCGATGCACT
1 TGCATCGATGCACT
2017897 TCAAGGGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 16 0.52
22 1 0.03
23 2 0.06
24 12 0.39
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:2018703 original size:31 final size:31
Alignment explanation
Indices: 2018613--2018737 Score: 103
Period size: 31 Copynumber: 4.0 Consensus size: 31
2018603 AGTCGAGGGT
*
2018613 TTACCTATGTTCTACGGAACATATGGACAGAA
1 TTACCTATGTTCTAC-GAACATATGGACAGTA
* * *
2018645 TTACCTATG-TCTTTCGAGATATGTGGACAGTA
1 TTACCTATGTTC-TACGA-ACATATGGACAGTA
*
2018677 -TACCTATGTTCTAAGTAACATATGGACA-TA
1 TTACCTATGTTCTACG-AACATATGGACAGTA
* * * *
2018707 TTACCTAGGTTCTTCGGGACCTATGGACAGT
1 TTACCTATGTTCTAC-GAACATATGGACAGT
2018738 TGCGGAGGTT
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
30 2 0.03
31 44 0.60
32 27 0.37
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (31 bp):
TTACCTATGTTCTACGAACATATGGACAGTA
Done.