Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008139.1 Hibiscus syriacus cultivar Beakdansim tig00110695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39355

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8309--8559
123
2.0
123
98
0
484
25
25
17
31
1.97
8706--8833
58
2.2
58
81
2
139
31
17
15
35
1.92
9496--9552
2
29.0
2
96
3
107
49
0
0
50
1.00
15294--15328
9
3.9
9
96
0
61
80
0
17
2
0.84
17588--17686
10
10.3
9
79
12
90
16
28
27
28
1.97
17589--17686
19
5.1
19
81
14
87
15
28
27
28
1.96
17588--17686
29
3.4
28
87
5
126
16
28
27
28
1.97
17683--17740
5
10.8
5
78
14
62
18
51
22
6
1.70
17683--17747
22
3.0
22
100
0
130
18
49
23
9
1.76
17737--17767
7
4.4
7
100
0
62
16
29
29
25
1.96
24911--25003
10
9.7
9
78
13
87
16
26
27
29
1.97
24911--25003
19
4.8
20
79
15
104
16
26
27
29
1.97
24911--25003
29
3.2
28
87
6
123
16
26
27
29
1.97
25004--25088
5
15.8
5
79
13
89
18
51
22
7
1.70
24997--25095
22
4.5
22
98
0
189
18
48
24
9
1.76
25004--25088
17
5.3
15
76
15
89
18
51
22
7
1.70
25085--25115
7
4.4
7
100
0
62
16
29
29
25
1.96
28703--28762
2
30.0
2
100
0
120
50
0
0
50
1.00
32662--32714
3
17.7
3
100
0
106
67
0
32
0
0.91

Tables:   1

The End!