Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008141.1 Hibiscus syriacus cultivar Beakdansim tig00110699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 154440
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:7593 original size:20 final size:21
Alignment explanation
Indices: 7555--7593 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
7545 GTCAAAAATT
7555 AAAGAATTTAGAAAGGTTTAA
1 AAAGAATTTAGAAAGGTTTAA
7576 AAAG-ATTTA-AAAGTGTTT
1 AAAGAATTTAGAAAG-GTTT
7594 GGAGTTGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (21 bp):
AAAGAATTTAGAAAGGTTTAA
Found at i:8534 original size:61 final size:61
Alignment explanation
Indices: 8407--8534 Score: 141
Period size: 61 Copynumber: 2.1 Consensus size: 61
8397 ATTAAAGGAC
* ** *
8407 TTAAAATCTAAGGCTCTAATTAATAATCTAAATCTAACCTAAGTGGCTAAAGTAAAAGAAT
1 TTAAAATCTAAAGCTCTAACAAATAATCTAAATCTAACCTAAGTGACTAAAGTAAAAGAAT
* * * * * * *
8468 CTAAAATCTAAAGTTCTAACAAATAGTCTAAAGTTTAATCTAAGTGACTGAATTAAAA-AAT
1 TTAAAATCTAAAGCTCTAACAAATAATCTAAA-TCTAACCTAAGTGACTAAAGTAAAAGAAT
8529 TTAAAA
1 TTAAAA
8535 ACTATGGCTA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
61 34 0.63
62 20 0.37
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (61 bp):
TTAAAATCTAAAGCTCTAACAAATAATCTAAATCTAACCTAAGTGACTAAAGTAAAAGAAT
Found at i:10174 original size:12 final size:12
Alignment explanation
Indices: 10156--10188 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10146 TTTATTTTTG
10156 TATGGGTTTGTGA
1 TATGGGTTTGT-A
10169 -ATGGGTTTGTA
1 TATGGGTTTGTA
10180 TATGGGTTT
1 TATGGGTTT
10189 TTATTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 18 0.95
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (12 bp):
TATGGGTTTGTA
Found at i:10774 original size:36 final size:36
Alignment explanation
Indices: 10716--10785 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
10706 AAAATTTACA
* **
10716 AAATATGGCAGCACATTTAAATTTAT-TAAAGATGGC
1 AAATATGGAAGCACATCCAAATTTATAT-AAGATGGC
*
10752 AAATATGGAAGCATATCCAAATTTATATAAGATG
1 AAATATGGAAGCACATCCAAATTTATATAAGATG
10786 ACAACATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 28 0.97
37 1 0.03
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (36 bp):
AAATATGGAAGCACATCCAAATTTATATAAGATGGC
Found at i:10813 original size:24 final size:24
Alignment explanation
Indices: 10780--10836 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
10770 AAATTTATAT
*
10780 AAGATGACAACATTTTCCTTACAA
1 AAGATAACAACATTTTCCTTACAA
10804 AAGATAACAACATTTTCCTTACAA
1 AAGATAACAACATTTTCCTTACAA
10828 AAGATAACA
1 AAGATAACA
10837 GTATCATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.26
Consensus pattern (24 bp):
AAGATAACAACATTTTCCTTACAA
Found at i:10956 original size:33 final size:31
Alignment explanation
Indices: 10918--10984 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 31
10908 CAAGTTAAAC
*
10918 TACTTACAGAAGATGGCAGTAACATGT-CAAGTT
1 TACTTACAAAAGATGGC---AACATGTCCAAGTT
*
10951 TACTTACAAAAGATTGCAACATGTCCAAGTT
1 TACTTACAAAAGATGGCAACATGTCCAAGTT
10982 TAC
1 TAC
10985 AAAAGAAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 7 0.23
31 9 0.29
33 15 0.48
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (31 bp):
TACTTACAAAAGATGGCAACATGTCCAAGTT
Found at i:11107 original size:108 final size:107
Alignment explanation
Indices: 10909--11125 Score: 407
Period size: 108 Copynumber: 2.0 Consensus size: 107
10899 TGACAGCAAC
*
10909 AAGTTAAACTACTTACAGAAGATGGCAGTAACATGTCAAGTTTACTTACAAAAGATTGCAACATG
1 AAGTTAAACTACTTACAGAAGATGGCAGTAACATGTAAAGTTTACTTACAAAAGATTGCAACATG
10974 TCCAAGTTTACAAAAGAAGGTAGTTGCATGTCCAAATTTACA
66 TCCAAGTTTACAAAAGAAGGTAGTTGCATGTCCAAATTTACA
11016 AAGTTAAACTTACTTACAGAAGATGGCAGTAACATGTAAAGTTTACTTACAAAAGATTGCAACAT
1 AAGTTAAAC-TACTTACAGAAGATGGCAGTAACATGTAAAGTTTACTTACAAAAGATTGCAACAT
*
11081 GTCCAAGTTTACAAAAGATGGTAGTTGCATGTCCAAATTTACA
65 GTCCAAGTTTACAAAAGAAGGTAGTTGCATGTCCAAATTTACA
11124 AA
1 AA
11126 AAATGGCAAA
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 9 0.08
108 98 0.92
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (107 bp):
AAGTTAAACTACTTACAGAAGATGGCAGTAACATGTAAAGTTTACTTACAAAAGATTGCAACATG
TCCAAGTTTACAAAAGAAGGTAGTTGCATGTCCAAATTTACA
Found at i:16342 original size:20 final size:19
Alignment explanation
Indices: 16307--16367 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
16297 AAATTTTGGC
*
16307 TTTTTTGGCTCTTTTTTTGT
1 TTTTTTGCCT-TTTTTTTGT
16327 TTTTTTGCC----TTTT-T
1 TTTTTTGCCTTTTTTTTGT
16341 TTTTTTGCCTTTTTTTTTGT
1 TTTTTTGCC-TTTTTTTTGT
16361 TTTTTTG
1 TTTTTTG
16368 TTTTTTTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
14 10 0.29
15 4 0.12
19 4 0.12
20 16 0.47
ACGTcount: A:0.00, C:0.10, G:0.11, T:0.79
Consensus pattern (19 bp):
TTTTTTGCCTTTTTTTTGT
Found at i:16343 original size:14 final size:14
Alignment explanation
Indices: 16321--16358 Score: 67
Period size: 14 Copynumber: 2.6 Consensus size: 14
16311 TTGGCTCTTT
16321 TTTTGTTTTTTTGCC
1 TTTT-TTTTTTTGCC
16336 TTTTTTTTTTTGCC
1 TTTTTTTTTTTGCC
16350 TTTTTTTTT
1 TTTTTTTTT
16359 GTTTTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.00, C:0.11, G:0.08, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTTTGCC
Found at i:16344 original size:15 final size:15
Alignment explanation
Indices: 16320--16358 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
16310 TTTGGCTCTT
16320 TTTTTGTTTTTTTGCC
1 TTTTT-TTTTTTTGCC
16336 -TTTTTTTTTTTGCC
1 TTTTTTTTTTTTGCC
16350 TTTTTTTTT
1 TTTTTTTTT
16359 GTTTTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTTTTGCC
Found at i:16356 original size:34 final size:32
Alignment explanation
Indices: 16307--16374 Score: 100
Period size: 34 Copynumber: 2.1 Consensus size: 32
16297 AAATTTTGGC
*
16307 TTTTTTGGCTCTTTTTTTGTTTTTTTGCCTTTTT
1 TTTTTTGCCTCTTTTTTTGTTTTTTTG--TTTTT
*
16341 TTTTTTGCCTTTTTTTTTGTTTTTTTGTTTTT
1 TTTTTTGCCTCTTTTTTTGTTTTTTTGTTTTT
16373 TT
1 TT
16375 GAAGAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 7 0.22
34 25 0.78
ACGTcount: A:0.00, C:0.09, G:0.10, T:0.81
Consensus pattern (32 bp):
TTTTTTGCCTCTTTTTTTGTTTTTTTGTTTTT
Found at i:16734 original size:15 final size:15
Alignment explanation
Indices: 16714--16752 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16704 ACACGATAAA
16714 ATAAATAAACAAAAG
1 ATAAATAAACAAAAG
**
16729 ATAAATAAATGAAAG
1 ATAAATAAACAAAAG
16744 ATGAAATAA
1 AT-AAATAA
16753 GATAATAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.69, C:0.03, G:0.10, T:0.18
Consensus pattern (15 bp):
ATAAATAAACAAAAG
Found at i:21927 original size:17 final size:17
Alignment explanation
Indices: 21902--21940 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
21892 CATTGTTGTA
*
21902 ACAACGCTTACAACATC
1 ACAAGGCTTACAACATC
21919 ACAAGGCTTACAACATC
1 ACAAGGCTTACAACATC
21936 ACAAG
1 ACAAG
21941 AAGACAGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.31, G:0.10, T:0.15
Consensus pattern (17 bp):
ACAAGGCTTACAACATC
Found at i:26304 original size:25 final size:26
Alignment explanation
Indices: 26270--26325 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
26260 CTTTTATCAT
*
26270 AAATTCATATC-TTGTATATACCTTG
1 AAATTCATATCTTTGTATATACATTG
26295 AAATTCATATCTTTTGTATATACATTG
1 AAATTCATATC-TTTGTATATACATTG
26322 AAAT
1 AAAT
26326 CAATTTTCGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 11 0.39
27 17 0.61
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (26 bp):
AAATTCATATCTTTGTATATACATTG
Found at i:27159 original size:30 final size:31
Alignment explanation
Indices: 27099--27166 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
27089 TAAAATTGGC
** * *
27099 AACTTTTCAAAAATTATTGATTTGGTCCCTA
1 AACTTTTCAAAAATTACAGATATAGTCCCTA
27130 AACTTTTCAAAAATTACAGA-ATAGTCCCTA
1 AACTTTTCAAAAATTACAGATATAGTCCCTA
*
27160 AAATTTT
1 AACTTTT
27167 TCTAAGGATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 14 0.44
31 18 0.56
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (31 bp):
AACTTTTCAAAAATTACAGATATAGTCCCTA
Found at i:31383 original size:123 final size:116
Alignment explanation
Indices: 31169--31404 Score: 409
Period size: 123 Copynumber: 2.0 Consensus size: 116
31159 CATCCTTAAG
31169 TTTTTACTTAGCTTTGATATTTCTTGATCTTGATTTCAAGCACACAATCATCATTACCAAACATA
1 TTTTTACTTAGCTTTGATATTTCTTGATCTTGATTTCAAGCACACAATCATCATTACCAAACATA
31234 TACAAATTCAAACAATGTTAGAATCTTACTACATATGCATACTTTGGAAAA
66 TACAAATTCAAACAATGTTAGAATCTTACTACATATGCATACTTTGGAAAA
31285 TTTTTACTTAGCTTTGATATTTCTTGATCTTGATTTCAAGCACAATCTAAATAAGCATCATTACC
1 TTTTTACTTAGCTTTGATATTTCTTGATCTTGATTTCAAGCAC-A-C--AAT---CATCATTACC
31350 AAACATATACAAATTCAAACAATGTTAGAATCTTACTACATATGCATACTTTGGA
59 AAACATATACAAATTCAAACAATGTTAGAATCTTACTACATATGCATACTTTGGA
31405 TCTTACTAAC
Statistics
Matches: 113, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
116 43 0.38
117 1 0.01
118 1 0.01
120 3 0.03
123 65 0.58
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (116 bp):
TTTTTACTTAGCTTTGATATTTCTTGATCTTGATTTCAAGCACACAATCATCATTACCAAACATA
TACAAATTCAAACAATGTTAGAATCTTACTACATATGCATACTTTGGAAAA
Found at i:31421 original size:26 final size:25
Alignment explanation
Indices: 31379--31429 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
31369 CAATGTTAGA
31379 ATCTTACTACATATGCATACTTTGG
1 ATCTTACTACATATGCATACTTTGG
31404 ATCTTACTAACATATGCATACTTTGG
1 ATCTTACT-ACATATGCATACTTTGG
31430 GAAAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (25 bp):
ATCTTACTACATATGCATACTTTGG
Found at i:31789 original size:31 final size:31
Alignment explanation
Indices: 31720--31787 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
31710 TAAAATTTTC
* *
31720 AACTTTTCAAAAATTACCGATTTGGTACCCA
1 AACTTTTCAAAAATTACAGATATGGTACCCA
* *
31751 AACTTTTCAAAAATTATAGA-ATGGTCCCCA
1 AACTTTTCAAAAATTACAGATATGGTACCCA
*
31781 AAATTTT
1 AACTTTT
31788 TCTAAGGCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 14 0.44
31 18 0.56
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (31 bp):
AACTTTTCAAAAATTACAGATATGGTACCCA
Found at i:35168 original size:6 final size:6
Alignment explanation
Indices: 35159--35183 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
35149 TAGGAAAAAG
35159 AAATAA AAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA A
35184 TATGACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:54837 original size:3 final size:3
Alignment explanation
Indices: 54827--54873 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
54817 TAATAATTTG
*
54827 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
54874 GTAAGATCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:59060 original size:23 final size:23
Alignment explanation
Indices: 59030--59119 Score: 119
Period size: 23 Copynumber: 3.9 Consensus size: 23
59020 GTCGAGGGTT
*
59030 CTATGTGGTCATTCGGGACAAAA
1 CTATGTGGTCATTCGGGACAAAC
* * *
59053 CTATGTGGTCCTTCGGGATAACC
1 CTATGTGGTCATTCGGGACAAAC
*
59076 CTATGTGGTCATTCGGGATAAAC
1 CTATGTGGTCATTCGGGACAAAC
59099 CTATGTGGTC-TTGCGGGACAA
1 CTATGTGGTCATT-CGGGACAA
59120 TTATGTGGCA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
22 2 0.03
23 57 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (23 bp):
CTATGTGGTCATTCGGGACAAAC
Found at i:65704 original size:23 final size:23
Alignment explanation
Indices: 65674--65802 Score: 154
Period size: 23 Copynumber: 5.7 Consensus size: 23
65664 GTCGAGGGTT
65674 CTATGTGGTCCTTCGGGACAAAA
1 CTATGTGGTCCTTCGGGACAAAA
65697 CTATGTGGTCCTTCGGGACAAAA
1 CTATGTGGTCCTTCGGGACAAAA
* * **
65720 CTATGTGGTCTTTCGTGACAACC
1 CTATGTGGTCCTTCGGGACAAAA
* * *
65743 CTATGTAGTCATTCGGGACAAAC
1 CTATGTGGTCCTTCGGGACAAAA
*
65766 CTATGTGGTCCTTCGAGAC--AA
1 CTATGTGGTCCTTCGGGACAAAA
* *
65787 TTATGTGGTACTTCGG
1 CTATGTGGTCCTTCGG
65803 TGCAAATTAC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
21 14 0.15
23 77 0.85
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
CTATGTGGTCCTTCGGGACAAAA
Found at i:66170 original size:7 final size:7
Alignment explanation
Indices: 66158--66189 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
66148 TGTAGGTTTT
66158 TTGTAAA
1 TTGTAAA
66165 TTGTAAA
1 TTGTAAA
66172 TTGTAAA
1 TTGTAAA
66179 TTGTAAA
1 TTGTAAA
66186 TTGT
1 TTGT
66190 TAGCATGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.47
Consensus pattern (7 bp):
TTGTAAA
Found at i:67168 original size:17 final size:17
Alignment explanation
Indices: 67117--67188 Score: 63
Period size: 17 Copynumber: 4.2 Consensus size: 17
67107 AATTAAGAGT
*
67117 TAGTCTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* *
67134 TAGTTTGATGAATGAAC
1 TAGTTTAATAAATGAAC
* *
67151 TAGTTTAATTAATTAAC
1 TAGTTTAATAAATGAAC
* * *
67168 TAACTTTATTCAATGAAC
1 T-AGTTTAATAAATGAAC
67186 TAG
1 TAG
67189 ATGCATGAAT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
17 30 0.70
18 13 0.30
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:67988 original size:44 final size:43
Alignment explanation
Indices: 67880--67992 Score: 118
Period size: 44 Copynumber: 2.6 Consensus size: 43
67870 CAAAAAGAGA
*
67880 ATGTTGATCCAACTCCTTCTATGATGGAATCAAGCAAAGTGGTG
1 ATGTTGATCCAACT-CTTCTATGATGGAATCAAGCAAAATGGTG
* * * * * *
67924 ATGCTAACCCACCTTCTTCTATGATGGAGTCGAGCAAAATGGTG
1 ATGTTGATCCAAC-TCTTCTATGATGGAATCAAGCAAAATGGTG
* *
67968 ATGTTGTTCCATCTCATTCTATGAT
1 ATGTTGATCCAACTC-TTCTATGAT
67993 TGTCGTTTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
43 2 0.04
44 52 0.95
45 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (43 bp):
ATGTTGATCCAACTCTTCTATGATGGAATCAAGCAAAATGGTG
Found at i:68808 original size:62 final size:62
Alignment explanation
Indices: 68706--68835 Score: 170
Period size: 62 Copynumber: 2.1 Consensus size: 62
68696 AAATTTAATT
* * * *
68706 ACTAAAACTAAAGGACCTAAAATTTAATGCTCTAATTAATAATCTAAAATCTAACCTAAGTG
1 ACTAAAACTAAAGAACCTAAAATCTAAAGCTCTAACTAATAATCTAAAATCTAACCTAAGTG
* * * * * *
68768 ACTAAAACTAAAGAATCTAAAATCTAAAGTTCTAACTAATAGTCTAAAGTTTAATCTAAGTG
1 ACTAAAACTAAAGAACCTAAAATCTAAAGCTCTAACTAATAATCTAAAATCTAACCTAAGTG
68830 ACTAAA
1 ACTAAA
68836 TTAAAAAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.48, C:0.15, G:0.08, T:0.29
Consensus pattern (62 bp):
ACTAAAACTAAAGAACCTAAAATCTAAAGCTCTAACTAATAATCTAAAATCTAACCTAAGTG
Found at i:68826 original size:20 final size:20
Alignment explanation
Indices: 68781--68826 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
68771 AAAACTAAAG
68781 AATCTAAAATCTAAAGTTCT
1 AATCTAAAATCTAAAGTTCT
*
68801 AA-CTAATAGTCTAAAGTT-T
1 AATCTAA-AATCTAAAGTTCT
68820 AATCTAA
1 AATCTAA
68827 GTGACTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.35
Consensus pattern (20 bp):
AATCTAAAATCTAAAGTTCT
Found at i:71100 original size:171 final size:172
Alignment explanation
Indices: 70814--71157 Score: 681
Period size: 171 Copynumber: 2.0 Consensus size: 172
70804 TCTAATTTTT
70814 TCTTGATTATCTAAGCTTTCTTTATACTTTTTATCATTTTCTTTATTTTATCAATTTTTTCACTT
1 TCTTGATTATCTAAGCTTTCTTTATACTTTTTATCATTTTCTTTATTTTATCAATTTTTTCACTT
70879 GTATTATTTGATTATTATTTTTAATCTTACTAACTCATTTTTCTTTTTCACTGTTTACTTACGTT
66 GTATTATTTGATTATTATTTTTAATCTTACTAACTCATTTTTCTTTTTCACTGTTTACTTACGTT
70944 GCTTTGTTATTTTTTTATATAAATGTCATATCATTTATAAGG
131 GCTTTGTTATTTTTTTATATAAATGTCATATCATTTATAAGG
70986 TCTTGATTATCTAAGCTTTCTTTATACTTTTTATCATTTTCTTTATTTTATCAA-TTTTTCACTT
1 TCTTGATTATCTAAGCTTTCTTTATACTTTTTATCATTTTCTTTATTTTATCAATTTTTTCACTT
71050 GTATTATTTGATTATTATTTTTAATCTTACTAACTCATTTTTCTTTTTCACTGTTTACTTACGTT
66 GTATTATTTGATTATTATTTTTAATCTTACTAACTCATTTTTCTTTTTCACTGTTTACTTACGTT
71115 GCTTTGTTATTTTTTTATATAAATGTCATATCATTTATAAGG
131 GCTTTGTTATTTTTTTATATAAATGTCATATCATTTATAAGG
71157 T
1 T
71158 AATGATGCTT
Statistics
Matches: 172, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
171 118 0.69
172 54 0.31
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (172 bp):
TCTTGATTATCTAAGCTTTCTTTATACTTTTTATCATTTTCTTTATTTTATCAATTTTTTCACTT
GTATTATTTGATTATTATTTTTAATCTTACTAACTCATTTTTCTTTTTCACTGTTTACTTACGTT
GCTTTGTTATTTTTTTATATAAATGTCATATCATTTATAAGG
Found at i:71956 original size:54 final size:54
Alignment explanation
Indices: 71874--71976 Score: 206
Period size: 54 Copynumber: 1.9 Consensus size: 54
71864 TTTCAAAGGC
71874 CATAGTTGTACCAAGCTTATTGAAGATAAGCCAACCAACATTGAGTCATTTATG
1 CATAGTTGTACCAAGCTTATTGAAGATAAGCCAACCAACATTGAGTCATTTATG
71928 CATAGTTGTACCAAGCTTATTGAAGATAAGCCAACCAACATTGAGTCAT
1 CATAGTTGTACCAAGCTTATTGAAGATAAGCCAACCAACATTGAGTCAT
71977 CCATGCCCAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (54 bp):
CATAGTTGTACCAAGCTTATTGAAGATAAGCCAACCAACATTGAGTCATTTATG
Found at i:77863 original size:137 final size:137
Alignment explanation
Indices: 77656--78071 Score: 615
Period size: 138 Copynumber: 3.1 Consensus size: 137
77646 ACCTAAATGC
* * * *
77656 CGAAATGGTAATTCACAAACCCATTATGAAT-CCATGGATGCACACATAGTGCCGAAAGTACAAA
1 CGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGTGCTGAAAGTACAAA
* * * *
77720 TAGTACTAATACGAAAATGCAATGTACGCATTAAACAAAATCGATCGATAACCTTCATACAAAAA
66 TAGTACTGATACGAAAATGCAATGTATGCATTAAACAAAATCGATTGATAACCTTCATACACAAA
77785 TGTATGT
131 TGTATGT
* *
77792 CGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGCGCTAAAAGTACAAA
1 CGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGTGCTGAAAGTACAAA
* *
77857 TAGTACTGATACAAAAATGCAATGTATGCATAAAACAAAATCGATTGATAACCTTCATTACACAA
66 TAGTACTGATACGAAAATGCAATGTATGCATTAAACAAAATCGATTGATAACCTTCA-TACACAA
*
77922 ATATATGT
130 ATGTATGT
* * * *
77930 CAAAATGATAATTCACAAACTCATTATGAATACCATGGTTGTACACCTAATG-TCGAAAGTACAA
1 CGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGTGCT-GAAAGTACAA
* *
77994 ATAGTATTGATACGAAAATGCAACGTATGCATTAAAC-AAATCGATTGATAACCTTCATACACAA
65 ATAGTACTGATACGAAAATGCAATGTATGCATTAAACAAAATCGATTGATAACCTTCATACACAA
78058 A-GTATGT
130 ATGTATGT
78065 CGAAATG
1 CGAAATG
78072 AACCTGTGAC
Statistics
Matches: 252, Mismatches: 25, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
135 11 0.04
136 38 0.15
137 101 0.40
138 102 0.40
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (137 bp):
CGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGTGCTGAAAGTACAAA
TAGTACTGATACGAAAATGCAATGTATGCATTAAACAAAATCGATTGATAACCTTCATACACAAA
TGTATGT
Found at i:81337 original size:17 final size:17
Alignment explanation
Indices: 81315--81349 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81305 ATCTATCTTC
81315 TTAAACCATTTAATGCT
1 TTAAACCATTTAATGCT
81332 TTAAACCATTTAATGCT
1 TTAAACCATTTAATGCT
81349 T
1 T
81350 AATTTAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (17 bp):
TTAAACCATTTAATGCT
Found at i:82800 original size:137 final size:137
Alignment explanation
Indices: 82554--82973 Score: 682
Period size: 137 Copynumber: 3.1 Consensus size: 137
82544 TACACCTAAG
* * *
82554 TGTCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATGTACACATAGTGTCGAAAGTAC
1 TGTCGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACATAGTGTCGAAAGTAC
* * * *
82619 AAATAGTACTAATATGAAAATGCAATGTATGCATTAAACAAAATCGATCGATAACCTTCATGCAC
66 AAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATCGATAACCTTCATACAC
82684 AAATATA
131 AAATATA
* *
82691 TGTCGAACTGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACTTAGTGTCGAAAGTAC
1 TGTCGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACATAGTGTCGAAAGTAC
82756 AAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATCGATAACCTTCATACAC
66 AAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATCGATAACCTTCATACAC
*
82821 AAATGTA
131 AAATATA
* *
82828 TGTCGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACCTAGTG-CTGAAAGTT
1 TGTCGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACATAGTGTC-GAAAGTA
*
82892 CAAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATTGATAACCTTCATACA
65 CAAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATCGATAACCTTCATACA
**
82957 CAAA-GGA
130 CAAATATA
82964 TGTCGAAATG
1 TGTCGAAATG
82974 TACCTGTGAC
Statistics
Matches: 267, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
136 13 0.05
137 254 0.95
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (137 bp):
TGTCGAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACACATAGTGTCGAAAGTAC
AAATAGTACTGATACGAAAATGCAACGTATGCATTAAACAAAATCGATCGATAACCTTCATACAC
AAATATA
Found at i:84010 original size:62 final size:62
Alignment explanation
Indices: 83944--84069 Score: 141
Period size: 62 Copynumber: 2.0 Consensus size: 62
83934 ATCATTATGA
* * *
83944 AAAATTATACTATCAGAACCA-TTT-CTCCATATTTTTTAGTG-TAAAAAATATTATATAGTAAC
1 AAAA-TATACTATCAGAAACATTTTCCTCCA-ATTTTTTAGCGCCAAAAAA-ATTATATAGTAAC
* * * *
84006 AAAATATATTATCATAAATATTTTCCTCCAATTTTTTTGCGCCAAAAAAATTATATAGTAAC
1 AAAATATACTATCAGAAACATTTTCCTCCAATTTTTTAGCGCCAAAAAAATTATATAGTAAC
84068 AA
1 AA
84070 TTTTTGTAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
61 12 0.22
62 31 0.57
63 11 0.20
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (62 bp):
AAAATATACTATCAGAAACATTTTCCTCCAATTTTTTAGCGCCAAAAAAATTATATAGTAAC
Found at i:87457 original size:31 final size:31
Alignment explanation
Indices: 87420--87483 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
87410 AAAAAATAAT
*
87420 TTATGATAATTTATTTAGACAAAATAACAAA
1 TTATGATAATTTATATAGACAAAATAACAAA
87451 TTATGATAATTTATATAGACAAAATAACAAA
1 TTATGATAATTTATATAGACAAAATAACAAA
87482 TT
1 TT
87484 TAATTTAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (31 bp):
TTATGATAATTTATATAGACAAAATAACAAA
Found at i:87499 original size:54 final size:53
Alignment explanation
Indices: 87427--87531 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 53
87417 AATTTATGAT
*
87427 AATTTATTTAGACAAAATAACAAATTATG-ATAATTTATATAGACAAAATAACA
1 AATTTATTTAGACAAAATAAAAAATTATGTA-AATTTATATAGACAAAATAACA
** * *
87480 AATTTAATTTAGTTAAAATAAAAAATTATGTCAAATTTATTTAGTCAAAATA
1 AATTT-ATTTAGACAAAATAAAAAATTATGT-AAATTTATATAGACAAAATA
87532 TTTTATCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
53 5 0.11
54 21 0.48
55 17 0.39
56 1 0.02
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (53 bp):
AATTTATTTAGACAAAATAAAAAATTATGTAAATTTATATAGACAAAATAACA
Found at i:87798 original size:199 final size:197
Alignment explanation
Indices: 87485--87869 Score: 520
Period size: 199 Copynumber: 1.9 Consensus size: 197
87475 TAACAAATTT
* * *
87485 AATTTAGTTAAAATAAAAAATTATGTCAAATTTATTTAGTCAAAATATTTTATCAAAATAGCAAA
1 AATTTAGTCAAAATAAAAAATTATGTCAAATTTATTTAGTCAAAATATTTTACCAAAATAACAAA
* * * * * *
87550 TTATGACAAATTTAAATAGTTATAATAACAAATTATAATAAATATTAATTTCTTAATATAAAAAG
66 TTATGACAAATTTAAATAATCAAAATAACAAATTATAACAAATATTAATTTCTCAATATAAAAAA
* *
87615 TTATGACAAATAATATTTTTTTCACAATAATC-AATTATATCAAATTTATTTAGTCACAAAAACA
131 TTATGACAAATAATA--TTTTTCACAATAA-CAAATTATAACAAAATTATTTAGTCACAAAAACA
87679 TGATA
193 TGATA
* * * * * *
87684 AATTTAGTCAAAATAAAAATTTATGTTAAATTTATTTCGTCACAATATTTTCCCAAAATAACAAC
1 AATTTAGTCAAAATAAAAAATTATGTCAAATTTATTTAGTCAAAATATTTTACCAAAATAACAAA
* ** * *
87749 TTTTGACAAATTTATTTAATCAAAATAACAATTTATAACAAATATTAATTTCTCATTATAAAAAA
66 TTATGACAAATTTAAATAATCAAAATAACAAATTATAACAAATATTAATTTCTCAATATAAAAAA
* *
87814 TTGTGACAAATAATATTTTTCACAATAACAAATTGTAACAAAATTATTTAGTCACA
131 TTATGACAAATAATATTTTTCACAATAACAAATTATAACAAAATTATTTAGTCACA
87870 GTAAAAAATT
Statistics
Matches: 161, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 1 0.01
197 36 0.22
199 124 0.77
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (197 bp):
AATTTAGTCAAAATAAAAAATTATGTCAAATTTATTTAGTCAAAATATTTTACCAAAATAACAAA
TTATGACAAATTTAAATAATCAAAATAACAAATTATAACAAATATTAATTTCTCAATATAAAAAA
TTATGACAAATAATATTTTTCACAATAACAAATTATAACAAAATTATTTAGTCACAAAAACATGA
TA
Found at i:87869 original size:32 final size:32
Alignment explanation
Indices: 87740--87896 Score: 95
Period size: 32 Copynumber: 4.9 Consensus size: 32
87730 ATTTTCCCAA
* * * * * *
87740 AATAACAACTTTTGACAAATTTATTTAATCAA
1 AATAACAAATTATAACAAAATTATTTAGTCAC
* * *
87772 AATAACAATTTATAACAAATATTAATTT-CTCAT
1 AATAACAAATTATAACAAA-ATT-ATTTAGTCAC
* * * * * *
87805 TATAAAAAATTGTGACAAATAATATTT-TTCAC
1 AATAACAAATTATAACAAA-ATTATTTAGTCAC
*
87837 AATAACAAATTGTAACAAAATTATTTAGTCAC
1 AATAACAAATTATAACAAAATTATTTAGTCAC
* * *
87869 AGTAAAAAATTATAA-AAAAATATTTAGT
1 AATAACAAATTATAACAAAATTATTTAGT
87897 AACGAAATAA
Statistics
Matches: 99, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
31 18 0.18
32 55 0.56
33 22 0.22
34 4 0.04
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.36
Consensus pattern (32 bp):
AATAACAAATTATAACAAAATTATTTAGTCAC
Found at i:91166 original size:40 final size:35
Alignment explanation
Indices: 91081--91169 Score: 88
Period size: 38 Copynumber: 2.3 Consensus size: 35
91071 AATAACCAAT
*
91081 GAATTCGCAACTCAATTTCGAATTCGAACACGAAA
1 GAATTCGCAACACAATTTCGAATTCGAACACGAAA
*
91116 GCCAATTTCGCAACACAGTTTCCGAATTCGCAACACAGAAGTA
1 G--AA-TTCGCAACACAATTT-CGAATTCG-AACAC-GAA--A
91159 GAATTCGCAAC
1 GAATTCGCAAC
91170 TCGAATTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
35 1 0.02
37 2 0.05
38 13 0.30
39 8 0.18
40 13 0.30
41 5 0.11
43 2 0.05
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (35 bp):
GAATTCGCAACACAATTTCGAATTCGAACACGAAA
Found at i:91280 original size:21 final size:21
Alignment explanation
Indices: 91254--91300 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
91244 TTTGCAACTC
91254 AATTTTCT-AATTCGCAACGCG
1 AATTTT-TGAATTCGCAACGCG
*
91275 AATTTTTGAATTCGCAACGTG
1 AATTTTTGAATTCGCAACGCG
91296 AATTT
1 AATTT
91301 AAATTTCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
AATTTTTGAATTCGCAACGCG
Found at i:91313 original size:61 final size:60
Alignment explanation
Indices: 91197--91325 Score: 152
Period size: 61 Copynumber: 2.1 Consensus size: 60
91187 GTAACACAAA
* * * *** **
91197 TTTCTATTTCGCAACTCGATTTTTAAATTCGCAACATGAGTTTCGTTTTTGCAACTCAAT
1 TTTCTAATTCGCAACGCGATTTTTAAATTCGCAACATGAATTTAAATTTCACAACTCAAT
* *
91257 TTTCTAATTCGCAACGCGAATTTTTGAATTCGCAACGTGAATTTAAATTTCACAACTCAAT
1 TTTCTAATTCGCAACGCG-ATTTTTAAATTCGCAACATGAATTTAAATTTCACAACTCAAT
91318 TTT-TAATT
1 TTTCTAATT
91326 TTGCAACACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 21 0.36
61 37 0.64
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.42
Consensus pattern (60 bp):
TTTCTAATTCGCAACGCGATTTTTAAATTCGCAACATGAATTTAAATTTCACAACTCAAT
Found at i:91332 original size:20 final size:20
Alignment explanation
Indices: 91202--91332 Score: 76
Period size: 20 Copynumber: 6.5 Consensus size: 20
91192 ACAAATTTCT
*
91202 ATTTCGCAACTCGATTTTTA
1 ATTTCGCAACTCAATTTTTA
* * *
91222 AATTCGCAACATGAGTTTCGTT-
1 ATTTCGCAAC-TCAATTT--TTA
91244 -TTT-GCAACTCAATTTTCTA
1 ATTTCGCAACTCAATTTT-TA
*
91263 A-TTCGCAACGCGAATTTTTGA
1 ATTTCGCAACTC-AATTTTT-A
* *
91284 A-TTCGCAACGTGAA-TTTAA
1 ATTTCGCAAC-TCAATTTTTA
*
91303 ATTTCACAACTCAATTTTTA
1 ATTTCGCAACTCAATTTTTA
*
91323 ATTTTGCAAC
1 ATTTCGCAAC
91333 ACAAATGTTT
Statistics
Matches: 83, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
17 1 0.01
18 1 0.01
19 12 0.14
20 43 0.52
21 24 0.29
23 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (20 bp):
ATTTCGCAACTCAATTTTTA
Found at i:91493 original size:22 final size:22
Alignment explanation
Indices: 91423--91492 Score: 104
Period size: 22 Copynumber: 3.2 Consensus size: 22
91413 TCTCTCACTC
*
91423 TCTCCGACAACATCCGTCCCCA
1 TCTCCGACGACATCCGTCCCCA
*
91445 TCTCCAACGACATCCGTCCCCA
1 TCTCCGACGACATCCGTCCCCA
* *
91467 TCTCTGACGACATCCATCCCCA
1 TCTCCGACGACATCCGTCCCCA
91489 TCTC
1 TCTC
91493 TAATCTTTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.21, C:0.49, G:0.09, T:0.21
Consensus pattern (22 bp):
TCTCCGACGACATCCGTCCCCA
Found at i:92143 original size:12 final size:12
Alignment explanation
Indices: 92128--92155 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
92118 TTTCCAATAC
92128 CAAACACAATCT
1 CAAACACAATCT
92140 CAAACACAATCT
1 CAAACACAATCT
92152 CAAA
1 CAAA
92156 ATCGACAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.32, G:0.00, T:0.14
Consensus pattern (12 bp):
CAAACACAATCT
Found at i:92315 original size:24 final size:24
Alignment explanation
Indices: 92288--92334 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
92278 AAATTTTATA
92288 TTGGTCAATACCCGGACTTTGATC
1 TTGGTCAATACCCGGACTTTGATC
* *
92312 TTGGTCAATACTCGGATTTTGAT
1 TTGGTCAATACCCGGACTTTGAT
92335 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATACCCGGACTTTGATC
Found at i:94725 original size:18 final size:18
Alignment explanation
Indices: 94699--94733 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94689 ATCAAAATGC
94699 AATCGCAATCAAAATCAA
1 AATCGCAATCAAAATCAA
* *
94717 AATCTCAATCACAATCA
1 AATCGCAATCAAAATCA
94734 CCTTCACCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.26, G:0.03, T:0.20
Consensus pattern (18 bp):
AATCGCAATCAAAATCAA
Found at i:95329 original size:20 final size:20
Alignment explanation
Indices: 95304--95362 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
95294 CTGGAGATGG
95304 GGACGGATGTCGTCGGAGAT
1 GGACGGATGTCGTCGGAGAT
* *
95324 GGACGGATGTCGCCAGAGAT
1 GGACGGATGTCGTCGGAGAT
95344 GGACGGATGTCGTCGGAGA
1 GGACGGATGTCGTCGGAGA
95363 GAGTGAGAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.44, T:0.17
Consensus pattern (20 bp):
GGACGGATGTCGTCGGAGAT
Found at i:95506 original size:60 final size:60
Alignment explanation
Indices: 95439--95652 Score: 239
Period size: 60 Copynumber: 3.5 Consensus size: 60
95429 ATCAAAAGCT
*
95439 GAGTTGCGAAATTGAAACTCGCGTTGCGAATTAGAAAATCGAGTTGCGAAAATGAAATTC
1 GAGTTGCGAAATTGAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAATGAAATTC
* * * *
95499 GCGTTGCGAAATTGAAACTCGCGTTGCGAATTAGAAAATCGAGTTGCAAAAATGAAACTC
1 GAGTTGCGAAATTGAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAATGAAATTC
* * * * * * * ** * *
95559 GTGTTGCGAATTTAAAAATCAATTTGTGAAACAGAAATTCGTGTTGCGAAAATGTCAAATTC
1 GAGTTGCGAAATTGAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAATG--AAATTC
* * *
95621 GAGTTGCGAATTTCAAATTCGAGTTGCGAATT
1 GAGTTGCGAAATTGAAACTCGAGTTGCGAATT
95653 CGGAAACTGT
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
60 98 0.77
62 29 0.23
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (60 bp):
GAGTTGCGAAATTGAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAATGAAATTC
Found at i:95638 original size:20 final size:20
Alignment explanation
Indices: 95439--95711 Score: 145
Period size: 20 Copynumber: 13.6 Consensus size: 20
95429 ATCAAAAGCT
* *
95439 GAGTTGCGAAATTGAAACTC
1 GAGTTGCGAATTTGAAATTC
* * *
95459 GCGTTGCGAATTAGAAAATC
1 GAGTTGCGAATTTGAAATTC
**
95479 GAGTTGCGAAAATGAAATTC
1 GAGTTGCGAATTTGAAATTC
* * *
95499 GCGTTGCGAAATTGAAACTC
1 GAGTTGCGAATTTGAAATTC
* * *
95519 GCGTTGCGAATTAGAAAATC
1 GAGTTGCGAATTTGAAATTC
* ** *
95539 GAGTTGCAAAAATGAAACTC
1 GAGTTGCGAATTTGAAATTC
* * *
95559 GTGTTGCGAATTTAAAAATC
1 GAGTTGCGAATTTGAAATTC
* * * ***
95579 AATTTGTGAAACAGAAATTC
1 GAGTTGCGAATTTGAAATTC
* * *
95599 GTGTTGCGAAAATGTCAAATTC
1 GAGTTGCG--AATTTGAAATTC
*
95621 GAGTTGCGAATTTCAAATTC
1 GAGTTGCGAATTTGAAATTC
* *
95641 GAGTTGCGAATTCGGAAACT-
1 GAGTTGCGAATT-TGAAATTC
* * ***
95661 GTGTTGCGAAATTGGCTTTC
1 GAGTTGCGAATTTGAAATTC
* *
95681 GTGTTGCGAATTCGAAATT-
1 GAGTTGCGAATTTGAAATTC
*
95700 AAGTTGCGAATT
1 GAGTTGCGAATT
95712 CGTTGGTTAT
Statistics
Matches: 186, Mismatches: 63, Indels: 9
0.72 0.24 0.03
Matches are distributed among these distances:
19 12 0.06
20 155 0.83
21 4 0.02
22 15 0.08
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (20 bp):
GAGTTGCGAATTTGAAATTC
Found at i:96089 original size:62 final size:59
Alignment explanation
Indices: 95843--96078 Score: 404
Period size: 58 Copynumber: 4.0 Consensus size: 59
95833 AACTGTTACC
95843 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAA-TTTTTT
1 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAATTTTTTT
*
95901 TACTTGAGAGATTCCATTTAATACCAAAG-AAAAGCTGGCATTGATAGCTAATTTTTTT
1 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAATTTTTTT
* *
95959 TATTTGAGAGGTTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAGTTTTTTTTTT
1 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTA---ATTTTTTT
96021 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAATTTTTT
1 TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAATTTTTT
96079 CTTTGTTTTG
Statistics
Matches: 167, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
57 22 0.13
58 61 0.37
59 27 0.16
62 57 0.34
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.37
Consensus pattern (59 bp):
TATTTGAGAGATTCCATTTAATACCAAAGAAAAAGCTGGCATTGATAGCTAATTTTTTT
Found at i:99700 original size:15 final size:15
Alignment explanation
Indices: 99682--99711 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99672 AACAAATTTA
99682 AAACATATAAACAGT
1 AAACATATAAACAGT
99697 AAACATATAAACAGT
1 AAACATATAAACAGT
99712 CAAATAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (15 bp):
AAACATATAAACAGT
Found at i:100080 original size:36 final size:35
Alignment explanation
Indices: 100028--100095 Score: 84
Period size: 37 Copynumber: 1.9 Consensus size: 35
100018 TAAGATATTT
*
100028 ATTAATTTTTAATATTT-AAAATAAAATTATTTTG
1 ATTAATTGTTAATATTTGAAAATAAAATTATTTTG
* *
100062 ATTAGATTGTTAATTATTTGAAGATAAATTTATT
1 ATTA-ATTGTTAA-TATTTGAAAATAAAATTATT
100096 AAATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 4 0.14
35 7 0.25
36 5 0.18
37 12 0.43
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (35 bp):
ATTAATTGTTAATATTTGAAAATAAAATTATTTTG
Found at i:103166 original size:13 final size:13
Alignment explanation
Indices: 103131--103167 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
103121 TTATAGATGC
*
103131 GCATATGAAGACT
1 GCATATGAATACT
103144 GCATATGAATACT
1 GCATATGAATACT
*
103157 GTATATGAATA
1 GCATATGAATA
103168 TTGTTCAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (13 bp):
GCATATGAATACT
Found at i:104442 original size:60 final size:60
Alignment explanation
Indices: 104309--104489 Score: 217
Period size: 60 Copynumber: 3.0 Consensus size: 60
104299 TGCATCATAT
* * *
104309 ATTCCCAAACTATGACTCTCATTTTAAATTGATCCTTAAACATTT-AACATTCTAATTTC
1 ATTCCCAAACTATGACTCTCATTCTAAATTGATCCTTAAACTTTTGAACATTCCAATTTC
* * *
104368 A-TCCTTAAACTATGACGCTTATTCTAAATT-AGTCCTTAAACTTTTGAACATTCCAATTTC
1 ATTCC-CAAACTATGACTCTCATTCTAAATTGA-TCCTTAAACTTTTGAACATTCCAATTTC
* * **
104428 ATTCCCAAACTATGAATCTCATTCTAAATTGCTCCCCAAACTTTTGAATC-TTCCAATTTC
1 ATTCCCAAACTATGACTCTCATTCTAAATTGATCCTTAAACTTTTGAA-CATTCCAATTTC
104488 AT
1 AT
104490 CTTCGAATTC
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
58 4 0.04
59 34 0.33
60 61 0.59
61 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (60 bp):
ATTCCCAAACTATGACTCTCATTCTAAATTGATCCTTAAACTTTTGAACATTCCAATTTC
Found at i:104732 original size:29 final size:29
Alignment explanation
Indices: 104696--104791 Score: 97
Period size: 29 Copynumber: 3.2 Consensus size: 29
104686 AGGGGTGAAA
*
104696 TTAAAATGTTCAAAAGTTTGAGGACTAAT
1 TTAAAATGTTCAAAAGTTTAAGGACTAAT
* *
104725 TTAAAATGATAATC-ATAGTTTAAGGATTAGA-
1 TTAAAATG-T--TCAAAAGTTTAAGGACTA-AT
* *
104756 TTGAAATGTTTAAAAGTTTAAGGACTAAT
1 TTAAAATGTTCAAAAGTTTAAGGACTAAT
104785 TTAAAAT
1 TTAAAAT
104792 ATGATTCATA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
28 2 0.04
29 27 0.51
30 2 0.04
31 19 0.36
32 3 0.06
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (29 bp):
TTAAAATGTTCAAAAGTTTAAGGACTAAT
Found at i:104733 original size:59 final size:60
Alignment explanation
Indices: 104630--104791 Score: 195
Period size: 60 Copynumber: 2.7 Consensus size: 60
104620 ATAATTTGGA
* * *
104630 ATGAAATTGAAATGTTCAAAAAGTTTG-GTGACCAATTTAGAATGA-ATATCATAG-TTAGGG
1 ATGAAATTGAAATGTTC-AAAAGTTTGAG-GACTAATTTAAAATGATA-ATCATAGTTTAAGG
* *
104690 GTGAAATTAAAATGTTCAAAAGTTTGAGGACTAATTTAAAATGATAATCATAGTTTAAGG
1 ATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTTAAAATGATAATCATAGTTTAAGG
* * * *
104750 ATTAGATTGAAATGTTTAAAAGTTTAAGGACTAATTTAAAAT
1 ATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTTAAAAT
104792 ATGATTCATA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
59 30 0.34
60 58 0.66
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.34
Consensus pattern (60 bp):
ATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTTAAAATGATAATCATAGTTTAAGG
Found at i:113057 original size:16 final size:16
Alignment explanation
Indices: 113038--113099 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
113028 TTTAGCATAC
113038 TTTATTTCATTTTAAA
1 TTTATTTCATTTTAAA
113054 TTTATTTCATTTTAAA
1 TTTATTTCATTTTAAA
* **
113070 TTTATTTCATTCTATT
1 TTTATTTCATTTTAAA
*
113086 TTTATTTTATTTTA
1 TTTATTTCATTTTA
113100 TTTTATTCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTTCATTTTAAA
Found at i:113085 original size:26 final size:26
Alignment explanation
Indices: 113058--113109 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
113048 TTTAAATTTA
113058 TTTCATTTTAAATTTATTTCATTCTAT
1 TTTCATTTT-AATTTATTTCATTCTAT
* * *
113085 TTTTATTTTATTTTATTTTATTCTA
1 TTTCATTTTAATTTATTTCATTCTA
113110 AGCTTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTCATTTTAATTTATTTCATTCTAT
Found at i:113095 original size:5 final size:5
Alignment explanation
Indices: 113038--113134 Score: 77
Period size: 5 Copynumber: 18.6 Consensus size: 5
113028 TTTAGCATAC
* * * * * *
113038 TTTAT TTCAT TTTAAA TTTAT TTCAT TTTAAA TTTAT TTCAT TCTATT
1 TTTAT TTTAT TTT-AT TTTAT TTTAT TTT-AT TTTAT TTTAT TTTA-T
* * *
113086 TTTAT TTTAT TTTAT TTTAT TCTAAG CTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT T-TTAT TTTAT TTTAT TTTAT TTTAT TTT
113135 TCTCTGAACA
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
5 56 0.80
6 14 0.20
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (5 bp):
TTTAT
Found at i:113135 original size:16 final size:15
Alignment explanation
Indices: 113038--113134 Score: 86
Period size: 16 Copynumber: 6.2 Consensus size: 15
113028 TTTAGCATAC
*
113038 TTTATTTCATTTTAAA
1 TTTATTTCATTTT-AT
*
113054 TTTATTTCATTTTAAA
1 TTTATTTCATTTT-AT
*
113070 TTTATTTCATTCTATT
1 TTTATTTCATTTTA-T
*
113086 TTTATTTTATTTTAT
1 TTTATTTCATTTTAT
* **
113101 TTTATTCTAAGCTTAT
1 TTTATT-TCATTTTAT
*
113117 TTTATTTTATTTTAT
1 TTTATTTCATTTTAT
113132 TTT
1 TTT
113135 TCTCTGAACA
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
15 17 0.25
16 52 0.75
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (15 bp):
TTTATTTCATTTTAT
Found at i:117142 original size:17 final size:17
Alignment explanation
Indices: 117120--117153 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
117110 TGACCGGTCA
117120 TGACCCGACTCGTTGAC
1 TGACCCGACTCGTTGAC
117137 TGACCCGACTCGTTGAC
1 TGACCCGACTCGTTGAC
117154 CGTTGACCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.35, G:0.24, T:0.24
Consensus pattern (17 bp):
TGACCCGACTCGTTGAC
Found at i:117223 original size:29 final size:29
Alignment explanation
Indices: 117162--117228 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
117152 ACCGTTGACC
**** *
117162 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTCTGGGAATTAATTCAAAATA
117191 GGTGCTATTCTGGGAATTAATTCAAAATA
1 GGTGCTATTCTGGGAATTAATTCAAAATA
117220 GGTGCTATT
1 GGTGCTATT
117229 TTAGTAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.25, T:0.40
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCAAAATA
Found at i:117317 original size:29 final size:29
Alignment explanation
Indices: 117191--117311 Score: 112
Period size: 29 Copynumber: 4.3 Consensus size: 29
117181 ATTCGGTTTT
* * *
117191 GGTGCTATTCTGGGAATTAATTCAAAATA-
1 GGTGCTATTTTGGTAATTAATTTAAAA-AG
*
117220 GGTGCTATTTTAGTAATT--TTTGAAAAA-
1 GGTGCTATTTTGGTAATTAATTT-AAAAAG
* *
117247 -GTG--ATTTTGGGAATTAATTTGAAAAG
1 GGTGCTATTTTGGTAATTAATTTAAAAAG
*
117273 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 GGTGCTATTTTGGTAATTAATTTAAAAAG
117302 GGTGCTATTT
1 GGTGCTATTT
117312 GTGTAAAATG
Statistics
Matches: 75, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
24 10 0.13
25 4 0.05
26 6 0.08
27 6 0.08
28 4 0.05
29 45 0.60
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.41
Consensus pattern (29 bp):
GGTGCTATTTTGGTAATTAATTTAAAAAG
Found at i:124459 original size:29 final size:28
Alignment explanation
Indices: 124398--124548 Score: 135
Period size: 29 Copynumber: 5.4 Consensus size: 28
124388 ACCGTTGACC
* ****
124398 GGTGCTATTCTGGGAATTAATTTGGTTTT
1 GGTGCTATTTTGGGAATTAATTT-GAAAA
* *
124427 GGTGCTATTCTGGGAATTAATTCGAAATA
1 GGTGCTATTTTGGGAATTAATTTGAAA-A
* *
124456 GGTGCTATTTTGGTAATT-TTTTGAAAA
1 GGTGCTATTTTGGGAATTAATTTGAAAA
* *
124483 -GTGATATTTTGGGAATTAATTCGAAAA
1 GGTGCTATTTTGGGAATTAATTTGAAAA
* * *
124510 GGGTGCTATTTTGGTAATTATTTTAAAAA
1 -GGTGCTATTTTGGGAATTAATTTGAAAA
124539 GGTGCTATTT
1 GGTGCTATTT
124549 GTGTAAAATG
Statistics
Matches: 100, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 15 0.15
27 8 0.08
28 17 0.17
29 60 0.60
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (28 bp):
GGTGCTATTTTGGGAATTAATTTGAAAA
Found at i:124500 original size:55 final size:57
Alignment explanation
Indices: 124427--124548 Score: 178
Period size: 55 Copynumber: 2.2 Consensus size: 57
124417 ATTTGGTTTT
* * *
124427 GGTGCTATTCTGGGAATTAATTCGAAATA-GGTGCTATTTTGGTAATT-TTTTGAAAA
1 GGTGATATTTTGGGAATTAATTCGAAA-AGGGTGCTATTTTGGTAATTATTTTAAAAA
124483 -GTGATATTTTGGGAATTAATTCGAAAAGGGTGCTATTTTGGTAATTATTTTAAAAA
1 GGTGATATTTTGGGAATTAATTCGAAAAGGGTGCTATTTTGGTAATTATTTTAAAAA
*
124539 GGTGCTATTT
1 GGTGATATTT
124549 GTGTAAAATG
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
54 1 0.02
55 42 0.71
56 8 0.14
57 8 0.14
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.42
Consensus pattern (57 bp):
GGTGATATTTTGGGAATTAATTCGAAAAGGGTGCTATTTTGGTAATTATTTTAAAAA
Found at i:128002 original size:21 final size:21
Alignment explanation
Indices: 127976--128019 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
127966 AAAGTTCTTT
127976 TTCTTCTCAAATTTGAATGAA
1 TTCTTCTCAAATTTGAATGAA
127997 TTCTTCTCAAATTTGAATGAA
1 TTCTTCTCAAATTTGAATGAA
128018 TT
1 TT
128020 GAATTGTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (21 bp):
TTCTTCTCAAATTTGAATGAA
Found at i:132035 original size:2 final size:2
Alignment explanation
Indices: 132028--132064 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
132018 AAGTTTGCAT
132028 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
132065 CCCTTTTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:134335 original size:30 final size:30
Alignment explanation
Indices: 134299--134366 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
134289 ACTAAGTCAA
*
134299 GAGCGATAAACTCTGACTTCATGGTATAAC
1 GAGCGATAAACTCTGACTTCATGGTAGAAC
134329 GAGCGATAAACTCTGACTTCATGGTAGAAC
1 GAGCGATAAACTCTGACTTCATGGTAGAAC
134359 GAGCGATA
1 GAGCGATA
134367 CAAGTCTGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.24
Consensus pattern (30 bp):
GAGCGATAAACTCTGACTTCATGGTAGAAC
Found at i:135631 original size:13 final size:13
Alignment explanation
Indices: 135577--135613 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
135567 GACCGGCAAC
135577 GACCCGACCCGTT
1 GACCCGACCCGTT
*
135590 GACCCGAACCGTT
1 GACCCGACCCGTT
135603 GACCCGACCCG
1 GACCCGACCCG
135614 ACCCGTTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.46, G:0.24, T:0.11
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:135633 original size:18 final size:18
Alignment explanation
Indices: 135576--135634 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
135566 TGACCGGCAA
135576 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
135594 CGA----A-CCGTTGACC
1 CGACCCGACCCGTTGACC
135607 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
135625 CGACCCGACC
1 CGACCCGACC
135635 TGGTGCTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.33
14 1 0.03
17 1 0.03
18 22 0.61
ACGTcount: A:0.19, C:0.49, G:0.22, T:0.10
Consensus pattern (18 bp):
CGACCCGACCCGTTGACC
Found at i:135767 original size:29 final size:28
Alignment explanation
Indices: 135730--135821 Score: 112
Period size: 29 Copynumber: 3.2 Consensus size: 28
135720 AAAAAAGTGA
* *
135730 TATTCTGGGAATTAATTCAAAATTGGTGC
1 TATTTTGGGAATTAATTCAAAA-GGGTGC
135759 TATTTTGGGAATTAATTCGAAAAGGGTGC
1 TATTTTGGGAATTAATTC-AAAAGGGTGC
* * *
135788 TATTTTGGTAATTATTTTAAAAAGGGTGC
1 TATTTTGGGAATTA-ATTCAAAAGGGTGC
135817 TATTT
1 TATTT
135822 GTGTAAAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
29 50 0.89
30 6 0.11
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (28 bp):
TATTTTGGGAATTAATTCAAAAGGGTGC
Found at i:136763 original size:42 final size:42
Alignment explanation
Indices: 136677--137006 Score: 481
Period size: 42 Copynumber: 7.8 Consensus size: 42
136667 GAAGTATTAT
*
136677 CAGGTCCCTTTGCTGTGTGCGAA-GGT-AGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGC-AAGGGTAAGCCTTACAGTTTCC
136718 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
*
136760 CAGGTCCCTTTGCTGTGTGCGAA-GGTAAGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGC-AAGGGTAAGCCTTACAGTTTCC
136802 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
*
136844 CAGGTCCCTTTGCTGTGTGCGAA-GGTAAGCCTTATAGTTTCC
1 CAGGTCCCTTTGCTGTGTGC-AAGGGTAAGCCTTACAGTTTCC
*
136886 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
* *
136928 CAGGTCCCTTTGCTGTGTGCAAGGATAAACCTTACAGTTTTCC
1 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAG-TTTCC
* * * *
136971 TAGG-CTCCTCTGCTTTGTGCACAGGTTAAGCCTTAC
1 CAGGTC-CCTTTGCTGTGTGCA-AGGGTAAGCCTTAC
137007 TGGTGTATAG
Statistics
Matches: 266, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
40 2 0.01
41 27 0.10
42 201 0.76
43 24 0.09
44 12 0.05
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (42 bp):
CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
Found at i:136817 original size:84 final size:84
Alignment explanation
Indices: 136677--137006 Score: 531
Period size: 84 Copynumber: 3.9 Consensus size: 84
136667 GAAGTATTAT
136677 CAGGTCCCTTTGCTGTGTGCGAAGGT-AGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
136741 GGTAAGCCTTACAGTTTCC
66 GGTAAGCCTTACAGTTTCC
136760 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
136825 GGTAAGCCTTACAGTTTCC
66 GGTAAGCCTTACAGTTTCC
* *
136844 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTATAGTTTCCCAGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
*
136909 GGTAAGCCTTACAGTTTAC
66 GGTAAGCCTTACAGTTTCC
* * * *
136928 CAGGTCCCTTTGCTGTGTGC-AAGGATAAACCTTACAGTTTTCCTAGG-CTCCTCTGCTTTGTGC
1 CAGGTCCCTTTGCTGTGTGCGAAGG-TAAGCCTTACAGTTTACC-AGGTC-CCTTTGCTGTGTGC
*
136991 ACAGGTTAAGCCTTAC
63 A-AGGGTAAGCCTTAC
137007 TGGTGTATAG
Statistics
Matches: 233, Mismatches: 9, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
83 30 0.13
84 174 0.75
85 16 0.07
86 13 0.06
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (84 bp):
CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
GGTAAGCCTTACAGTTTCC
Found at i:142773 original size:29 final size:29
Alignment explanation
Indices: 142731--142894 Score: 112
Period size: 29 Copynumber: 5.6 Consensus size: 29
142721 AGCGTTGATC
* ** *
142731 GGTGCTATTCTGGGAATTTATTCGATTTT
1 GGTGCTATTATGGGAATTTATTCGAAATG
* *
142760 GGTGCTATTATGGGTATTAATTCGAAATG
1 GGTGCTATTATGGGAATTTATTCGAAATG
* * * ** **
142789 GGTGCTATTTTGGTAATTTTTTTTAAAAAA
1 GGTGCTATTATGGGAA-TTTATTCGAAATG
* * * *
142819 GGTGATATTCTGGGAATTAATTCGAAATT
1 GGTGCTATTATGGGAATTTATTCGAAATG
* * * *
142848 GGTGCTATTTTGTGAATTAATTCGAAAAG
1 GGTGCTATTATGGGAATTTATTCGAAATG
* *
142877 GGTGCTATTTTGGTAATT
1 GGTGCTATTATGGGAATT
142895 AATTTAAAAA
Statistics
Matches: 103, Mismatches: 31, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
29 83 0.81
30 20 0.19
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (29 bp):
GGTGCTATTATGGGAATTTATTCGAAATG
Found at i:142885 original size:88 final size:87
Alignment explanation
Indices: 142731--142907 Score: 255
Period size: 88 Copynumber: 2.0 Consensus size: 87
142721 AGCGTTGATC
* * ** * *
142731 GGTGCTATTCTGGGAATTTATTCGATTTTGGTGCTATTATGGGTATTAATTCGAAATGGGTGCTA
1 GGTGATATTCTGGGAATTAATTCGAAATTGGTGCTATTATGGGAATTAATTCGAAAAGGGTGCTA
**
142796 TTTTGGTAATTTTTTTTAAAAAA
66 TTTTGGTAA-TTAATTTAAAAAA
* *
142819 GGTGATATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGTGAATTAATTCGAAAAGGGTGCTA
1 GGTGATATTCTGGGAATTAATTCGAAATTGGTGCTATTATGGGAATTAATTCGAAAAGGGTGCTA
142884 TTTTGGTAATTAATTTAAAAAA
66 TTTTGGTAATTAATTTAAAAAA
142906 GG
1 GG
142908 GTACTATTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 13 0.16
88 66 0.84
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (87 bp):
GGTGATATTCTGGGAATTAATTCGAAATTGGTGCTATTATGGGAATTAATTCGAAAAGGGTGCTA
TTTTGGTAATTAATTTAAAAAA
Found at i:142895 original size:29 final size:29
Alignment explanation
Indices: 142760--142916 Score: 129
Period size: 29 Copynumber: 5.3 Consensus size: 29
142750 ATTCGATTTT
* *
142760 GGTGCTATTATGGGT-ATTAATTCGAAATG
1 GGTGCTATT-TTGGTAATTAATTCGAAAAG
** ** *
142789 GGTGCTATTTTGGTAATTTTTTTTAAAAAA
1 GGTGCTATTTTGGTAA-TTAATTCGAAAAG
* * * **
142819 GGTGATATTCTGGGAATTAATTCGAAATT
1 GGTGCTATTTTGGTAATTAATTCGAAAAG
142848 GGTGCTATTTT-GTGAATTAATTCGAAAAG
1 GGTGCTATTTTGGT-AATTAATTCGAAAAG
**
142877 GGTGCTATTTTGGTAATTAATTTAAAAAAG
1 GGTGCTATTTTGGTAATTAA-TTCGAAAAG
*
142907 GGTACTATTT
1 GGTGCTATTT
142917 GTGTAAAATG
Statistics
Matches: 99, Mismatches: 24, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
28 5 0.05
29 56 0.57
30 38 0.38
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (29 bp):
GGTGCTATTTTGGTAATTAATTCGAAAAG
Found at i:143825 original size:42 final size:41
Alignment explanation
Indices: 143764--144094 Score: 459
Period size: 42 Copynumber: 7.8 Consensus size: 41
143754 GAAGTATTAT
143764 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGC-AAGGTAAGCCTTACAGTTTAC
** *
143806 TTGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAA-GGTAAGCCTTACAGTTTAC
143848 CAGGTCCCTTTGCTGTGTGCAAAGGTAAGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGC-AAGGTAAGCCTTACAGTTTAC
*
143890 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGCAA-GGTAAGCCTTACAGTTTAC
*
143932 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTCC
1 CAGGTCCCTTTGCTGTGTGC-AAGGTAAGCCTTACAGTTTAC
143974 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCCTTACAGTTTAC
1 CAGGTCCCTTTGCTGTGTGCAA-GGTAAGCCTTACAGTTTAC
* * *
144016 CAGGTCCCTTTGCTGTGTGCAAGAATAAACCTTACAGTTTTC
1 CAGGTCCCTTTGCTGTGTGCAAG-GTAAGCCTTACAGTTTAC
*
144058 CTAGG-CTCCTCTT-CTTTGTGCACAGGTTAAGCCTTAC
1 C-AGGTC-CCT-TTGCTGTGTGCA-AGG-TAAGCCTTAC
144095 TGGTGTATAG
Statistics
Matches: 264, Mismatches: 14, Indels: 20
0.89 0.05 0.07
Matches are distributed among these distances:
41 7 0.03
42 226 0.86
43 18 0.07
44 13 0.05
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.32
Consensus pattern (41 bp):
CAGGTCCCTTTGCTGTGTGCAAGGTAAGCCTTACAGTTTAC
Found at i:143905 original size:84 final size:84
Alignment explanation
Indices: 143764--144094 Score: 506
Period size: 84 Copynumber: 3.9 Consensus size: 84
143754 GAAGTATTAT
**
143764 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACTTGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
143829 GGTAAGCCTTACAGTTTCC
66 GGTAAGCCTTACAGTTTCC
*
143848 CAGGTCCCTTTGCTGTGTGCAAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
143913 GGTAAGCCTTACAGTTTCC
66 GGTAAGCCTTACAGTTTCC
*
143932 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTCCCAGGTCCCTTTGCTGTGTGCAAG
1 CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
*
143997 GGTAAGCCTTACAGTTTAC
66 GGTAAGCCTTACAGTTTCC
* * * *
144016 CAGGTCCCTTTGCTGTGTGC-AAGAATAAACCTTACAGTTTTCCTAGG-CTCCTCTT-CTTTGTG
1 CAGGTCCCTTTGCTGTGTGCGAAG-GTAAGCCTTACAGTTTACC-AGGTC-CCT-TTGCTGTGTG
*
144078 CACAGGTTAAGCCTTAC
62 CA-AGGGTAAGCCTTAC
144095 TGGTGTATAG
Statistics
Matches: 231, Mismatches: 11, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
83 3 0.01
84 199 0.86
85 14 0.06
86 15 0.06
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.32
Consensus pattern (84 bp):
CAGGTCCCTTTGCTGTGTGCGAAGGTAAGCCTTACAGTTTACCAGGTCCCTTTGCTGTGTGCAAG
GGTAAGCCTTACAGTTTCC
Found at i:145018 original size:11 final size:11
Alignment explanation
Indices: 145004--145085 Score: 58
Period size: 11 Copynumber: 7.2 Consensus size: 11
144994 AATATATTTA
145004 ATATATAAATT
1 ATATATAAATT
145015 ATATATAAACTAT
1 ATATATAAA-T-T
**
145028 ATATATAACCT
1 ATATATAAATT
* *
145039 ATATTTATATT
1 ATATATAAATT
* *
145050 ATAAACTATA-T
1 ATATA-TAAATT
*
145061 ATTATATAAGTT
1 A-TATATAAATT
145073 ATATATAAATT
1 ATATATAAATT
145084 AT
1 AT
145086 GTTTATATGA
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
11 35 0.65
12 10 0.19
13 9 0.17
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (11 bp):
ATATATAAATT
Found at i:145030 original size:31 final size:31
Alignment explanation
Indices: 144995--145063 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
144985 ATTGAAAAAA
*
144995 ATATATTTAATATATAAATTATA-TATAAACT
1 ATATATTTAACATAT-AATTATATTATAAACT
* * *
145026 ATATATATAACCTATATTTATATTATAAACT
1 ATATATTTAACATATAATTATATTATAAACT
145057 ATATATT
1 ATATATT
145064 ATATAAGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (31 bp):
ATATATTTAACATATAATTATATTATAAACT
Found at i:145065 original size:19 final size:19
Alignment explanation
Indices: 145025--145068 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
145015 ATATATAAAC
*
145025 TATATATATAACCTATATT
1 TATATATATAAACTATATT
145044 TATAT-TATAAACTATATAT
1 TATATATATAAACTATAT-T
145063 TATATA
1 TATATA
145069 AGTTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (19 bp):
TATATATATAAACTATATT
Found at i:145125 original size:15 final size:14
Alignment explanation
Indices: 145098--145140 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
145088 TTATATGAAC
145098 TATATGTAACTATA
1 TATATGTAACTATA
145112 TATATGTAAACTATA
1 TATATGT-AACTATA
* *
145127 TATGTATAACTATA
1 TATATGTAACTATA
145141 AAAAGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (14 bp):
TATATGTAACTATA
Found at i:145198 original size:2 final size:2
Alignment explanation
Indices: 145191--145233 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
145181 TTAATTTATT
145191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
145233 T
1 T
145234 TATTCAAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:145543 original size:2 final size:2
Alignment explanation
Indices: 145531--145580 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
145521 CTAATAGTAT
145531 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
145572 TA TA T- TA TA
1 TA TA TA TA TA
145581 GAAATACTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:145654 original size:21 final size:21
Alignment explanation
Indices: 145629--145679 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
145619 TAGTGTATAA
*
145629 AAACCCTAAATCGTAAACCCT
1 AAACCCTAAATCCTAAACCCT
* * *
145650 AAACCTTTAATCCTTAACCCT
1 AAACCCTAAATCCTAAACCCT
145671 AAACCCTAA
1 AAACCCTAA
145680 CATGCAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.41, C:0.33, G:0.02, T:0.24
Consensus pattern (21 bp):
AAACCCTAAATCCTAAACCCT
Found at i:145880 original size:17 final size:17
Alignment explanation
Indices: 145858--145891 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
145848 AATATGTATG
*
145858 TATAAACCATGTATATA
1 TATAAACCATATATATA
*
145875 TATAAACTATATATATA
1 TATAAACCATATATATA
145892 ACCTATATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.38
Consensus pattern (17 bp):
TATAAACCATATATATA
Found at i:145906 original size:15 final size:13
Alignment explanation
Indices: 145869--145904 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
145859 ATAAACCATG
145869 TATATATATAAAC
1 TATATATATAAAC
*
145882 TATATATATAACC
1 TATATATATAAAC
145895 TATATATATA
1 TATATATATA
145905 TATATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:146175 original size:15 final size:16
Alignment explanation
Indices: 146150--146179 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
146140 GATTTTATGA
146150 TATGTATGCATGCATG
1 TATGTATGCATGCATG
146166 TATG-ATGCATGCAT
1 TATGTATGCATGCAT
146180 TACATAGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (16 bp):
TATGTATGCATGCATG
Done.