genome.fa.s8142.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008142.1 Hibiscus syriacus cultivar Beakdansim tig00110704_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  459836

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305975--306537	132	4.3	132	90	0	876	53	8	26	10	1.64
306218--306522	33	9.2	33	63	19	82	55	8	25	10	1.63
306502--306587	33	2.5	33	84	3	109	63	5	23	6	1.41
306436--306619	99	1.9	99	83	8	241	59	8	24	8	1.53
308811--309414	66	9.2	66	78	8	545	54	7	26	11	1.64
308787--309414	132	4.8	133	87	3	788	54	7	26	11	1.63
309024--309334	33	9.4	34	65	15	105	53	8	27	11	1.65
309396--309435	21	1.9	21	100	0	80	40	10	37	12	1.77
309393--309439	21	2.4	19	83	16	69	44	8	36	10	1.70
309488--309550	33	1.9	33	84	12	85	46	14	30	9	1.76
312192--312276	33	2.6	32	79	3	98	15	25	16	42	1.87
312321--312392	33	2.2	33	87	0	99	13	33	8	44	1.74
313294--313387	40	2.3	43	81	5	104	30	28	9	30	1.89
322213--322259	20	2.3	22	79	20	57	57	4	2	36	1.30
322217--322259	21	2.0	21	82	8	52	55	4	2	37	1.33
323306--323356	17	2.8	17	79	8	57	66	1	0	31	1.03
324826--324873	23	2.1	23	88	0	69	39	14	6	39	1.71
326858--326912	22	2.7	20	71	20	58	47	3	1	47	1.30
327562--327615	26	2.2	25	83	12	67	31	29	3	35	1.75
332893--332922	15	2.0	15	93	0	51	33	6	16	43	1.74
339420--339456	2	18.5	2	94	0	65	51	0	2	45	1.15
342247--342280	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344859--344892	15	2.3	15	94	0	59	38	2	20	38	1.68
344993--345091	49	2.0	50	80	9	114	47	2	0	50	1.12
345227--345290	28	2.3	26	84	12	83	51	1	0	46	1.10
345226--345329	28	3.6	27	75	23	79	52	1	0	45	1.11
345314--345395	31	2.4	35	78	17	93	51	0	1	47	1.08
345292--345395	54	2.0	51	82	10	124	52	0	0	45	1.13
345283--345422	56	2.6	52	78	15	144	51	0	0	47	1.11
345370--345423	23	2.2	24	81	12	58	50	0	0	50	1.00
345559--345612	19	2.8	19	94	0	90	40	14	20	24	1.90
345593--345708	42	2.8	42	93	0	196	50	18	13	17	1.79
348827--348909	42	2.0	42	92	0	139	34	4	12	48	1.62
351263--351308	24	1.9	24	86	0	65	23	15	23	36	1.93
352392--352856	225	2.1	225	91	0	743	26	13	13	46	1.81
352392--352856	113	4.1	112	91	1	716	26	13	13	46	1.81
352768--352815	20	2.4	20	92	0	78	14	16	10	58	1.63
353698--353723	2	13.0	2	100	0	52	50	0	0	50	1.00
354173--354219	22	2.1	22	100	0	94	21	38	23	17	1.93
367247--367336	48	1.9	47	91	6	148	31	18	2	47	1.61
367571--367622	24	2.2	24	82	0	59	11	15	25	48	1.78
367592--367622	14	2.2	14	94	0	53	9	12	22	54	1.67
367581--367642	24	2.6	24	89	5	90	12	12	19	54	1.70
368370--368444	10	7.7	10	69	21	61	9	12	21	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368376--368440	16	4.1	16	95	0	121	7	12	23	56	1.61
368510--368542	16	2.1	16	100	0	66	6	12	24	57	1.57
368613--368815	95	2.1	95	98	0	388	36	7	8	46	1.63
369649--369677	2	14.5	2	100	0	58	48	0	0	51	1.00
376232--376327	48	2.0	48	93	0	165	47	11	11	29	1.74
379988--380033	14	3.3	14	81	9	58	39	0	8	52	1.33
379987--380054	28	2.4	27	82	4	73	36	1	13	48	1.51
386053--386399	42	8.3	42	96	0	626	35	24	19	20	1.96
387663--387703	19	2.2	19	86	0	55	46	9	19	24	1.80
387686--387733	22	2.2	22	84	0	60	54	12	10	22	1.68
388559--388634	32	2.4	32	82	8	93	35	15	17	31	1.91
389603--389765	59	2.8	59	91	0	256	36	12	21	30	1.90
390011--390044	17	1.9	18	88	5	52	38	8	17	35	1.81
395530--395593	32	2.0	32	93	0	110	29	10	23	35	1.89
398060--398099	17	2.4	16	87	8	53	50	5	0	45	1.23
398156--398195	19	2.0	20	90	4	64	42	2	5	50	1.37
398811--398851	17	2.5	16	84	7	55	31	0	2	65	1.05
401983--402021	18	2.2	18	85	0	51	20	35	2	41	1.66
405769--405808	3	13.7	3	84	5	55	72	0	27	0	0.85
409185--409212	7	4.0	7	100	0	56	14	14	14	57	1.66
410322--410378	26	2.2	27	84	6	73	42	19	0	38	1.51
410402--410439	20	1.9	20	88	0	58	47	10	21	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412270--412310	19	2.2	19	86	8	57	48	0	4	46	1.23
412385--412427	19	2.3	19	100	0	86	39	9	4	46	1.57
412383--412430	19	2.3	21	82	17	73	43	8	4	43	1.53
417406--417460	16	3.9	16	69	26	52	67	0	0	32	0.91
417393--417455	27	2.4	27	86	10	94	60	0	0	39	0.97
417920--417966	2	23.5	2	100	0	94	48	0	0	51	1.00
431261--431328	35	1.9	36	90	3	111	47	2	0	50	1.16
435450--436136	138	5.0	138	88	1	916	27	22	17	32	1.96
438749--438853	30	3.6	29	71	6	86	17	29	8	44	1.78
440896--440929	17	1.9	18	88	5	52	64	5	0	29	1.17
442475--442696	30	7.4	30	76	6	175	21	25	11	41	1.86
442475--442663	60	3.2	58	80	8	218	20	25	11	42	1.85
442487--442663	90	2.0	91	80	3	205	19	26	10	43	1.83
454386--454509	34	3.6	34	93	0	194	45	20	8	25	1.78

Tables:   1   2

The End!