genome.fa.s8144.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008144.1 Hibiscus syriacus cultivar Beakdansim tig00110706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78113

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6916--6942	14	1.9	14	100	0	54	37	22	18	22	1.95
7391--7576	98	1.9	98	88	0	282	36	23	18	21	1.95
7421--7972	280	2.0	272	89	4	847	34	24	18	22	1.96
7693--7909	106	2.0	106	84	1	283	33	25	19	21	1.97
9055--9122	20	3.2	21	73	22	54	23	7	1	67	1.24
9069--9108	22	1.9	22	90	10	66	22	5	0	72	1.04
9066--9123	25	2.3	25	85	8	73	22	5	1	70	1.16
9144--9215	28	2.5	28	80	6	74	23	6	1	68	1.22
9237--9273	2	18.0	2	94	5	65	48	2	0	48	1.15
10826--10857	10	3.2	10	100	0	64	40	9	0	50	1.35
16057--16082	2	13.0	2	100	0	52	50	0	0	50	1.00
16425--16457	16	2.0	17	88	5	50	15	6	6	72	1.24
16529--16576	18	2.6	17	78	15	51	16	4	8	70	1.27
17627--17661	17	2.1	17	89	5	54	17	0	28	54	1.43
19837--19908	15	5.1	15	68	17	55	55	4	0	40	1.19
19835--19925	41	2.2	42	90	5	143	51	5	1	41	1.32
21587--21623	18	2.1	19	90	10	60	35	0	8	56	1.29
27110--27174	13	5.1	13	74	22	66	32	1	0	66	1.01
27115--27172	22	2.6	22	86	8	73	32	0	0	67	0.91
34372--34396	2	12.5	2	100	0	50	52	0	0	48	1.00
40175--40226	21	2.5	21	81	3	61	38	19	25	17	1.93
40215--40308	20	4.7	20	80	7	100	34	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40894--41058	20	9.1	19	73	16	125	12	21	22	43	1.85
40946--41033	33	2.6	33	89	1	131	11	23	25	39	1.88
43062--43184	42	2.9	42	80	2	122	22	36	17	22	1.95
43118--43184	21	3.2	21	66	6	55	23	35	20	19	1.95
44545--44580	14	2.6	14	95	0	63	30	0	25	44	1.54
44763--44889	33	3.9	32	84	8	175	16	22	18	42	1.89
44756--44886	66	2.0	66	95	0	235	17	22	17	41	1.89
44831--44889	19	3.4	19	73	22	74	13	22	18	45	1.84
47181--47205	12	2.1	12	100	0	50	0	28	0	72	0.86
47380--47433	24	2.2	24	90	0	81	38	20	16	24	1.92
48490--48547	20	2.9	20	94	0	98	39	24	20	15	1.91
48570--48643	19	4.5	16	83	16	66	13	20	18	47	1.82
48566--48633	19	3.8	19	87	12	101	13	22	17	47	1.82
48750--48786	14	2.6	14	86	0	56	48	21	0	29	1.50
50207--50287	42	2.0	42	87	2	119	22	13	41	22	1.88
50655--50721	19	3.5	19	83	4	89	37	23	23	14	1.93
50710--50767	14	3.9	14	79	16	71	48	25	17	8	1.75
50694--50772	32	2.4	33	95	2	142	46	24	18	10	1.80
50801--50858	14	3.9	14	75	16	62	10	15	25	48	1.77
50784--50874	32	2.8	33	91	3	157	12	17	23	47	1.81
50861--50913	20	2.7	20	90	0	79	15	20	24	39	1.91
51395--51439	18	2.5	18	88	0	72	13	15	44	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52754--52796	20	2.2	20	95	0	77	53	18	18	9	1.70
53074--53117	22	2.0	22	95	0	79	18	15	45	20	1.85
53305--53377	20	3.7	20	92	0	119	26	19	28	26	1.98
53291--53420	41	3.2	41	77	2	136	24	16	23	34	1.95
53347--53481	41	3.3	41	81	4	130	20	21	20	38	1.94
53413--53483	21	3.4	21	80	3	99	15	23	18	42	1.88
53427--53500	20	3.7	20	80	3	94	17	22	18	40	1.91
53411--53500	41	2.2	41	100	0	180	17	24	17	40	1.91
62159--62200	3	13.7	3	85	14	59	66	2	0	30	1.04
62160--62200	15	2.6	16	88	3	66	68	2	0	29	1.03
62353--62470	43	2.9	41	70	13	116	24	17	33	24	1.97
62399--62849	134	3.4	135	85	4	551	24	17	32	25	1.97
62960--63015	29	1.9	30	85	7	80	41	12	21	25	1.88
62960--63038	29	2.7	29	76	7	79	39	12	18	29	1.88
63789--63861	36	2.0	36	83	5	92	39	13	17	28	1.88
63804--63891	36	2.4	36	82	12	101	40	12	18	28	1.87
63924--64022	37	2.6	37	84	6	119	42	13	17	27	1.86
64368--65381	4	258.8	4	94	4	1809	25	0	24	50	1.50
66925--67071	4	36.8	4	95	0	267	26	0	23	49	1.55
68378--68415	16	2.4	16	86	8	51	0	10	10	78	0.95
68379--68451	27	2.7	27	79	12	71	0	17	9	72	1.10
68631--68927	4	75.8	4	93	4	516	26	0	23	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70196--70246	25	2.1	25	82	10	61	3	17	13	64	1.42
70249--70284	18	1.9	19	88	5	56	0	13	8	77	0.98
76854--76895	20	2.1	20	90	0	66	33	7	11	47	1.68

Tables:   1

The End!