genome.fa.s8145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008145.1 Hibiscus syriacus cultivar Beakdansim tig00110709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110128

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8494--8535	3	13.7	3	85	14	59	66	2	0	30	1.04
8495--8535	15	2.6	16	88	3	66	68	2	0	29	1.03
8686--8800	40	2.8	40	72	13	110	25	18	32	24	1.97
8729--9178	134	3.4	135	85	5	542	24	17	32	25	1.97
9287--9343	30	1.9	30	82	10	73	40	12	21	26	1.88
9291--9366	31	2.5	30	77	8	82	39	13	17	30	1.87
10118--10190	36	2.0	36	83	5	92	39	13	17	28	1.88
10133--10220	36	2.4	36	82	12	101	40	12	18	28	1.87
10254--10348	36	2.5	36	80	11	102	42	11	17	28	1.85
10694--11704	4	255.8	4	95	2	1812	25	0	23	50	1.52
13026--13059	16	2.2	16	89	5	52	0	11	8	79	0.94
12995--13058	22	2.8	22	79	11	58	1	14	10	73	1.17
13275--13407	4	33.8	4	95	3	243	26	0	23	50	1.49
14722--14770	18	2.8	17	79	14	55	0	12	10	77	0.99
14723--14770	17	2.8	16	84	12	60	0	12	10	77	1.00
14724--14787	29	2.3	26	84	7	74	0	14	9	76	1.01
14713--14789	12	6.3	12	72	19	61	1	15	9	74	1.14
14978--15268	4	72.8	4	98	0	564	25	0	24	50	1.50
16545--16597	25	2.2	25	83	10	65	3	18	13	64	1.43
16598--16633	18	1.9	19	88	5	56	0	13	8	77	0.98
16586--16648	13	4.9	12	78	16	56	0	14	9	76	1.02
16586--16646	26	2.3	27	86	5	81	0	13	9	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921--17963	13	3.2	13	78	18	52	53	13	18	13	1.73
23288--23329	20	2.1	20	90	0	66	33	7	11	47	1.68
24915--24983	34	2.0	34	85	0	93	49	21	13	15	1.79
30416--30475	29	2.1	29	100	0	120	50	13	13	23	1.77
35448--35477	6	5.0	6	100	0	60	16	16	16	50	1.79
41521--41920	214	1.9	214	95	0	728	33	15	19	31	1.93
41870--41961	42	2.2	42	90	0	139	27	21	19	31	1.97
42004--42130	42	3.0	41	79	5	139	27	18	19	33	1.96
42012--42081	22	3.3	22	67	15	65	25	18	20	35	1.95
42505--42661	53	2.9	53	85	4	192	29	21	24	24	1.99
42506--42682	53	3.3	53	84	5	171	29	19	23	27	1.98
50275--50333	29	2.0	29	93	0	100	50	15	13	20	1.77
51728--51765	20	1.9	20	94	0	67	21	13	7	57	1.60
51728--51825	23	4.3	23	78	8	96	15	13	13	58	1.64
51728--51766	10	3.9	10	79	0	51	20	12	7	58	1.58
51766--51843	24	3.3	24	83	3	104	11	15	16	56	1.67
51748--51826	23	3.4	23	81	6	97	13	13	13	58	1.64
52589--52632	9	4.5	10	80	13	56	79	2	0	18	0.83
52591--52632	10	4.4	9	82	17	50	80	2	0	16	0.81
52591--52632	19	2.2	19	87	8	59	80	2	0	16	0.81
52860--52943	39	2.2	37	83	6	107	69	1	3	26	1.12
52843--52922	16	5.1	16	70	22	62	68	1	2	27	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53021--53054	4	8.2	4	96	3	59	73	0	0	26	0.83
53009--53103	39	2.5	40	75	15	101	67	0	5	27	1.12
66108--66149	10	4.3	10	85	14	52	76	0	2	21	0.90
66106--66148	22	2.0	22	86	9	61	76	0	2	20	0.89
66112--66150	19	2.1	19	85	9	53	76	0	2	20	0.90
66386--66451	18	3.5	18	78	11	78	65	0	6	28	1.17
66485--66531	2	25.0	2	79	12	55	55	2	0	42	1.12
66485--66540	12	5.5	10	85	12	55	58	1	0	39	1.08
72331--72384	28	1.9	28	85	7	74	33	1	1	62	1.16
78563--78606	19	2.3	19	92	0	70	31	22	18	27	1.97
82820--82922	30	3.4	30	91	2	145	31	26	21	21	1.98
82904--83035	31	4.2	31	77	9	133	34	21	18	25	1.96
84298--84342	21	2.1	21	87	0	63	15	24	28	31	1.96
93408--93447	2	20.0	2	94	0	71	47	0	0	52	1.00

Tables:   1

The End!