Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008147.1 Hibiscus syriacus cultivar Beakdansim tig00110711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85812

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10781--10806
2
13.0
2
100
0
52
50
0
0
50
1.00
10915--10954
21
2.0
20
85
14
55
30
0
0
70
0.88
10947--11015
29
2.4
29
90
0
111
37
7
1
53
1.38
11002--11059
29
2.0
30
83
6
75
37
3
1
56
1.26
15739--15824
43
2.0
43
100
0
172
39
27
4
27
1.76
19319--19416
45
2.2
44
85
3
133
30
17
15
36
1.91
22012--22114
51
2.0
51
80
0
116
32
11
13
42
1.80
23957--24013
21
2.7
21
94
0
96
38
15
14
31
1.87
29546--29658
10
11.8
9
72
12
73
18
24
27
29
1.98
29562--29658
19
5.1
19
78
10
81
17
24
27
29
1.97
29547--29639
29
3.2
28
83
6
105
17
24
27
30
1.97
29605--29660
19
2.9
19
97
0
103
17
26
28
26
1.98
29606--29664
9
6.3
9
78
7
64
16
28
28
25
1.97
29661--29722
22
2.7
22
87
5
79
20
43
20
14
1.87
29678--29711
17
2.0
17
94
0
59
20
47
20
11
1.81
29705--29735
7
4.4
7
91
0
53
19
29
25
25
1.99
31569--31625
21
2.7
21
94
0
96
38
15
14
31
1.87
50630--50659
15
1.9
16
93
6
53
46
0
0
53
1.00
56043--56170
29
4.5
29
74
9
93
43
20
3
32
1.70
56043--56193
55
2.7
58
81
5
175
43
21
5
30
1.74
56053--56218
84
2.0
85
89
1
253
42
20
6
30
1.76
56063--56223
29
5.7
29
79
4
157
42
22
6
28
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63312--63444
29
4.6
28
71
9
99
37
23
6
32
1.81
66124--66215
44
2.0
46
85
4
125
36
25
19
18
1.94
66150--66215
23
2.9
23
81
0
78
33
25
22
18
1.97
80184--80233
24
2.1
24
92
3
84
22
4
18
56
1.58
85146--85196
19
2.5
22
73
23
58
49
11
0
39
1.40

Tables:   1

The End!