Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008151.1 Hibiscus syriacus cultivar Beakdansim tig00110717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 219606
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:690 original size:21 final size:22
Alignment explanation
Indices: 649--690 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
639 GTTCATTTAT
649 TTGAAAGTGCATTCAATACACA
1 TTGAAAGTGCATTCAATACACA
* *
671 TTGAATGTGCA-TCGATACAC
1 TTGAAAGTGCATTCAATACAC
691 TTTGCCCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (22 bp):
TTGAAAGTGCATTCAATACACA
Found at i:1416 original size:3 final size:3
Alignment explanation
Indices: 1387--1548 Score: 211
Period size: 3 Copynumber: 53.7 Consensus size: 3
1377 GGATGTTACA
* * * * *
1387 TCT TCT ACT TCT TCT CCT TCT TTT TCT TCT TCT TCT CCT TCC TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * *
1435 TCT TCT TTT TCT TC- TCAT TCT TCT CCT TCT TCT TCT TC- TCC TCTT
1 TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TC-T
1480 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-T
1529 TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TC
1549 CTTTTCCACT
Statistics
Matches: 139, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
2 4 0.03
3 128 0.92
4 7 0.05
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:5884 original size:16 final size:17
Alignment explanation
Indices: 5860--5906 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
5850 ATCTATTTTA
*
5860 ATTACTATATTTACA-T
1 ATTATTATATTTACATT
*
5876 ATTATTATATTTTCATT
1 ATTATTATATTTACATT
*
5893 ATTTATTAAATTTA
1 A-TTATTATATTTA
5907 ATAATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 13 0.52
17 2 0.08
18 10 0.40
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATTATATTTACATT
Found at i:11700 original size:4 final size:4
Alignment explanation
Indices: 11691--11721 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
11681 CAATTAATGG
11691 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
11722 TTACCTTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:13628 original size:3 final size:3
Alignment explanation
Indices: 13614--14730 Score: 468
Period size: 3 Copynumber: 374.3 Consensus size: 3
13604 TCTTATTTCT
* * * * *
13614 TTC TTA TTC TTC TTC TTTC TTC TTTC TTT TTT TTC TCTA TTC TTAT TTC
1 TTC TTC TTC TTC TTC -TTC TTC -TTC TTC TTC TTC T-TC TTC TT-C TTC
* *
13663 ATTC TCC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC -TC TT-
1 -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
13707 TTC -TC TT- TT- TTC TT- TTC TT- TGTA TT- TTC TTC -TC ATTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC -TTC TTC
* *
13746 TT- TCTC ATTT TTA TTC TTC TTC TTC TTC -TC ATTC -TC TTC -TC TTCC
1 TTC T-TC -TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TT-C
* *
13791 TTC TTTC ATT- TCC TTC TTCC TCC TTCC TTC TTC -TC TTC -TC ATTC
1 TTC -TTC -TTC TTC TTC TT-C TTC TT-C TTC TTC TTC TTC TTC -TTC
** * * * * * *
13835 GCC TTC TTC TCC TT- ATC TCC TCC TCC TATC TTC TCAC TTC ATT- TTCC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC T-TC TTC -TTC TT-C
* * * *
13882 TTC -CC TT- TCC TTC -TC ATTC TCC TTC -TC TTC -TC ATTC TCC TT-
1 TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC -TTC TTC TTC
* * *
13923 TCTC ATTC -TC TTC TCC TTC TTTC TTC TTG TTC TTC TTC TTC TTT TTC
1 T-TC -TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * * *
13970 TTA TTG TTC TTG TTC TTG TTC TTG TTC TTC TTC TTG TT- TTC -TC TTTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC
* * * * * *
14017 TTC TCC TCC TCC TCC TTC -TC ATC TTA TTC TTC -TC GTTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC
* *
14061 -TC ATTC -TC GTTC TTC TTC TTC TTC TTC TTA TTT TTC -TC TTTC TTC
1 TTC -TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC
* * * ** * * * *
14106 TTC -TC ATTT TTA TCC TTC TAA TTC TCC TTG TTT TTC -TC ATTC TCC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC
* * * *
14151 TCC TTC TTC -TC ATTC TCC TTC TCC TTC TTC TCC TTC TTC TTC TTC
1 TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * *
14196 TTC -TC ATTC TCC TTC TCC TTC -TC ATTC TTC TCC TCC TTC -TC ATTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC -TTC
* * *
14241 TTC TTC -TC ATTC -TC TT- TCTC ATTC -TC TTTC TCC TTC TCC TTC TCC
1 TTC TTC TTC -TTC TTC TTC T-TC -TTC TTC -TTC TTC TTC TTC TTC TTC
* * * * *
14286 TTC TT- TTT TTC TTC TTC TAC TTA TTC -TC CTC ATTC TTC TTT TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC
* * * * *
14330 TTC TGC TTC TTT TTC TTC TTC -TC ATTC TTC TGC TTC TGC TTC TTA
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC
* * * * * * * * *
14375 TTC TTA TTA TTC TTC TTC TCC TCC TCC TTC TTC TCC TCC TTC TCC TCC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * * * * * * *
14423 TAC TTC -TC CTC ATTC TCC TTC TAC TTC TCC TCC TCC TCC TCC TCC
1 TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
14468 TCC TCC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
14515 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC TCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * * *
14563 TAC TTC TTC TTC TAC TTC TAC TT- TTC TTA TTC TTA TTA TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * * * * *
14610 TTC -TC ATTC TTC TCC TTC TCC TCC TTC CTC TCC TTC TTA TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
14655 TCC TTC TTC TTC -TC TTTC TTC TTC -TC TTTC TTC TTC -TC ATTC TCC
1 TTC TTC TTC TTC TTC -TTC TTC TTC TTC -TTC TTC TTC TTC -TTC TTC
14700 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
14731 CCTGTAACAC
Statistics
Matches: 856, Mismatches: 160, Indels: 196
0.71 0.13 0.16
Matches are distributed among these distances:
2 98 0.11
3 663 0.77
4 92 0.11
5 3 0.00
ACGTcount: A:0.05, C:0.35, G:0.01, T:0.59
Consensus pattern (3 bp):
TTC
Found at i:13658 original size:50 final size:48
Alignment explanation
Indices: 13603--13824 Score: 139
Period size: 47 Copynumber: 4.8 Consensus size: 48
13593 TATTCGTGAT
* * *
13603 TTCTTATTTCTTTCTTATTCTTCTTCTTTCTTCTTTCTTTTTTTTCTCTA
1 TTCTTATTTCATTCTCATTCTTCTTC-TTCTTC-TTCTTTTTCTTCTCTA
* *
13653 TTCTTATTTCATTCTCCTTCTTCTTCTTCTTCTTCTTTTTCTTCT-TC
1 TTCTTATTTCATTCTCATTCTTCTTCTTCTTCTTCTTTTTCTTCTCTA
* *
13700 TTCTCT-TTTC--TCT--TTTTTCTT-TTCTT-TGT-ATTTTCTTCTC-A
1 TTCT-TATTTCATTCTCATTCTTCTTCTTCTTCT-TCTTTTTCTTCTCTA
* * * *
13741 TTCTCT-TTCTCATTTTTATTCTTCTTCTTCTTC-TCATTCTCTTCTCT-
1 TTCT-TATT-TCATTCTCATTCTTCTTCTTCTTCTTCTTTTTCTTCTCTA
* * * *
13788 TCCTTCTTTCATT-TCCTTCTTCCTCCTTCCTTCTTCT
1 TTCTTATTTCATTCTCATTCTT-CTTCTT-CTTCTTCT
13825 CTTCTCATTC
Statistics
Matches: 140, Mismatches: 16, Indels: 34
0.74 0.08 0.18
Matches are distributed among these distances:
41 18 0.13
42 8 0.06
43 7 0.05
44 2 0.01
45 9 0.06
46 19 0.14
47 33 0.24
48 15 0.11
49 6 0.04
50 23 0.16
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.66
Consensus pattern (48 bp):
TTCTTATTTCATTCTCATTCTTCTTCTTCTTCTTCTTTTTCTTCTCTA
Found at i:13732 original size:71 final size:72
Alignment explanation
Indices: 13614--13783 Score: 167
Period size: 71 Copynumber: 2.4 Consensus size: 72
13604 TCTTATTTCT
* *
13614 TTCTTATTCTTCTTCTT-TCTTCTT-TCTTTTTTTTCTCTATTCTTA-TTTCATTCTCCTTCT-T
1 TTCTTATTCTTCTTCTTCTCTT-TTCTCTTTTTTTTCTCTATTCGTATTTTC-TTCTCATTCTCT
13675 CTTCTTC-TTC
64 -TTC-TCATTC
* *
13685 TTCTTTTTCTTCTTCTTCTCTTTTCTCTTTTTTCTTTTCT-TT-GTATTTTCTTCTCATTCTCTT
1 TTCTTATTCTTCTTCTTCTCTTTTCTCTTTTTT-TTCTCTATTCGTATTTTCTTCTCATTCTCTT
*
13748 TCTCATTT
65 TCTCATTC
* * *
13756 TTATTCTTCTTCTTCTTCTC-ATTCTCTT
1 TTCTTATTCTTCTTCTTCTCTTTTCTCTT
13784 CTCTTCCTTC
Statistics
Matches: 85, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
70 9 0.11
71 52 0.61
72 19 0.22
73 5 0.06
ACGTcount: A:0.05, C:0.26, G:0.01, T:0.68
Consensus pattern (72 bp):
TTCTTATTCTTCTTCTTCTCTTTTCTCTTTTTTTTCTCTATTCGTATTTTCTTCTCATTCTCTTT
CTCATTC
Found at i:13733 original size:25 final size:25
Alignment explanation
Indices: 13669--13735 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
13659 TTTCATTCTC
*
13669 CTTCTTCTTCT-TCTTCT-TCTTTTT
1 CTTCTTCTTCTATTTTCTCT-TTTTT
*
13693 CTTCTTCTTCTCTTTTCTCTTTTTT
1 CTTCTTCTTCTATTTTCTCTTTTTT
*
13718 CTT-TTCTTTGTATTTTCT
1 CTTCTTC-TTCTATTTTCT
13736 TCTCATTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 14 0.38
25 22 0.59
26 1 0.03
ACGTcount: A:0.01, C:0.25, G:0.01, T:0.72
Consensus pattern (25 bp):
CTTCTTCTTCTATTTTCTCTTTTTT
Found at i:13734 original size:41 final size:41
Alignment explanation
Indices: 13689--13766 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
13679 TTCTTCTTCT
* *
13689 TTTTCTTCTTC-TTCTCTTTTCTCTTTTTTCTT-TTCTTTGTA
1 TTTTCTTC-TCATTCTC-TTTCTCATTTTTATTCTTCTTTGTA
13730 TTTTCTTCTCATTCTCTTTCTCATTTTTATTCTTCTT
1 TTTTCTTCTCATTCTCTTTCTCATTTTTATTCTTCTT
13767 CTTCTTCTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 15 0.45
41 18 0.55
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.71
Consensus pattern (41 bp):
TTTTCTTCTCATTCTCTTTCTCATTTTTATTCTTCTTTGTA
Found at i:13814 original size:23 final size:24
Alignment explanation
Indices: 13759--13907 Score: 71
Period size: 23 Copynumber: 6.2 Consensus size: 24
13749 CTCATTTTTA
*
13759 TTCTT-CTTCTTCTTCTCATTCTC
1 TTCTTCCTCCTTCTTCTCATTCTC
*
13782 TTC-TCTTCCTTCTT-TCATT-TCC
1 TTCTTCCTCCTTCTTCTCATTCT-C
*
13804 TTCTTCCTCCTTCCT-TC-TTCTC
1 TTCTTCCTCCTTCTTCTCATTCTC
* * * *
13826 TTCTCATTCGCCTTCTTCTCCTTATC
1 TTCT--TCCTCCTTCTTCTCATTCTC
* *
13852 -TCCTCCTCCTATCTTCTCACTTCATT
1 TTCTTCCTCCT-TCTTCTCA-TTC-TC
*
13878 TTCCTTCC-CTTTCCTTCTCATTCTCC
1 TT-CTTCCTCCTT-CTTCTCATTCT-C
13904 TTCT
1 TTCT
13908 CTTCTCATTC
Statistics
Matches: 94, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
21 1 0.01
22 17 0.18
23 27 0.29
24 15 0.16
25 9 0.10
26 11 0.12
27 10 0.11
28 4 0.04
ACGTcount: A:0.05, C:0.40, G:0.01, T:0.54
Consensus pattern (24 bp):
TTCTTCCTCCTTCTTCTCATTCTC
Found at i:15624 original size:23 final size:23
Alignment explanation
Indices: 15598--15665 Score: 109
Period size: 23 Copynumber: 3.0 Consensus size: 23
15588 CACCACAGCT
*
15598 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
*
15621 CGTAGAATTGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
*
15644 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
15666 CTATAAAATG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:17295 original size:21 final size:21
Alignment explanation
Indices: 17265--17305 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
17255 GTTCATTTAT
17265 TTGAAAGTGCATCGATACACA
1 TTGAAAGTGCATCGATACACA
*
17286 TTGAATGTGCATCGATACAC
1 TTGAAAGTGCATCGATACAC
17306 TTTTCCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (21 bp):
TTGAAAGTGCATCGATACACA
Found at i:18033 original size:3 final size:3
Alignment explanation
Indices: 18011--18130 Score: 145
Period size: 3 Copynumber: 40.0 Consensus size: 3
18001 GGATGTTACA
* * *
18011 TCT TCT ACT TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * *
18059 TCT TCT TCT TCT TTT TCT TCT TCT CCT TCC TCT TCT TCT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
18107 TC- TCAT TCT TC- TCAT TCT TCT TCT
1 TCT TC-T TCT TCT TC-T TCT TCT TCT
18131 CATTATAAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
2 4 0.04
3 91 0.92
4 4 0.04
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:21947 original size:16 final size:17
Alignment explanation
Indices: 21923--21969 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
21913 ATCTATTTTA
*
21923 ATTACTATATTTACA-T
1 ATTATTATATTTACATT
*
21939 ATTATTATATTTTCATT
1 ATTATTATATTTACATT
*
21956 ATTTATTAAATTTA
1 A-TTATTATATTTA
21970 ATAATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 13 0.52
17 2 0.08
18 10 0.40
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATTATATTTACATT
Found at i:27897 original size:23 final size:23
Alignment explanation
Indices: 27867--27947 Score: 87
Period size: 23 Copynumber: 3.7 Consensus size: 23
27857 ATGAGATTTG
27867 TCCCGAAGGACCACTATGAAATA
1 TCCCGAAGGACCACTATGAAATA
* * * *
27890 TACCGAAGGATCAC-A-G-TATG
1 TCCCGAAGGACCACTATGAAATA
*
27910 TCCCGAAAGACCACTATGAAATA
1 TCCCGAAGGACCACTATGAAATA
*
27933 TCCCGAAGGATCACT
1 TCCCGAAGGACCACT
27948 GTATGTCCCG
Statistics
Matches: 44, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
20 13 0.30
21 2 0.05
22 2 0.05
23 27 0.61
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (23 bp):
TCCCGAAGGACCACTATGAAATA
Found at i:27926 original size:43 final size:43
Alignment explanation
Indices: 27865--27964 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
27855 CTATGAGATT
*
27865 TGTCCCGAAGGACCACTATGAAATATACCGAAGGATCACAGTA
1 TGTCCCGAAAGACCACTATGAAATATACCGAAGGATCACAGTA
* *
27908 TGTCCCGAAAGACCACTATGAAATATCCCGAAGGATCACTGTA
1 TGTCCCGAAAGACCACTATGAAATATACCGAAGGATCACAGTA
*
27951 TGTCCCGAATGACC
1 TGTCCCGAAAGACC
27965 GCGTAGACGC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (43 bp):
TGTCCCGAAAGACCACTATGAAATATACCGAAGGATCACAGTA
Found at i:27958 original size:20 final size:20
Alignment explanation
Indices: 27892--27959 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
27882 ATGAAATATA
*
27892 CCGAAGGATCACAGTATGTC
1 CCGAAGGATCACTGTATGTC
* * * *
27912 CCGAAAGACCACTATGAAATATC
1 CCGAAGGATCAC--TG-TATGTC
27935 CCGAAGGATCACTGTATGTC
1 CCGAAGGATCACTGTATGTC
27955 CCGAA
1 CCGAA
27960 TGACCGCGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
20 19 0.53
21 2 0.06
22 1 0.03
23 14 0.39
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (20 bp):
CCGAAGGATCACTGTATGTC
Found at i:28297 original size:30 final size:29
Alignment explanation
Indices: 28229--28297 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 29
28219 CATAGATCTT
28229 ATCACTTAACTTATCCTTTATACTCATTTA
1 ATCACTTAACTTAT-CTTTATACTCATTTA
**
28259 ATTTCTTAACTTAT-TTTATATTCTC-TTATA
1 ATCACTTAACTTATCTTTATA--CTCATT-TA
28289 ATCACTTAA
1 ATCACTTAA
28298 TAGTGTCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
28 6 0.19
29 2 0.06
30 24 0.75
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (29 bp):
ATCACTTAACTTATCTTTATACTCATTTA
Found at i:32211 original size:23 final size:21
Alignment explanation
Indices: 32183--32256 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 21
32173 ATGAGATTTG
32183 TCCCGAATGACCACTATGAAATA
1 TCCCGAA-GACCA-TATGAAATA
* * *
32206 TCCCGAAAGATCAT-TG-TATG
1 TCCCG-AAGACCATATGAAATA
32226 TCCCGAAGAACCATTATGAAATA
1 TCCCGAAG-ACCA-TATGAAATA
32249 TCCCGAAG
1 TCCCGAAG
32257 GATCACTGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 3 0.08
20 10 0.25
21 3 0.08
22 3 0.08
23 19 0.47
24 2 0.05
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (21 bp):
TCCCGAAGACCATATGAAATA
Found at i:32229 original size:43 final size:42
Alignment explanation
Indices: 32181--32276 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 42
32171 CTATGAGATT
*
32181 TGTCCCGAATGACCACTATGAAATATCCCGAAAGATCATTGTA
1 TGTCCCGAA-GACCACTATGAAATATCCCGAAAGATCACTGTA
* *
32224 TGTCCCGAAGAACCATTATGAAATATCCCGAAGGATCACTGTA
1 TGTCCCGAAG-ACCACTATGAAATATCCCGAAAGATCACTGTA
*
32267 TATCCCGAAG
1 TGTCCCGAAG
32277 GACCGCGTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 1 0.02
43 47 0.98
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
TGTCCCGAAGACCACTATGAAATATCCCGAAAGATCACTGTA
Found at i:32613 original size:30 final size:29
Alignment explanation
Indices: 32545--32613 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 29
32535 CATAGATCTT
32545 ATCACTTAACTTATCCTTTATACTCATTTA
1 ATCACTTAACTTAT-CTTTATACTCATTTA
**
32575 ATTTCTTAACTTAT-TTTATATTCTC-TTATA
1 ATCACTTAACTTATCTTTATA--CTCATT-TA
32605 ATCACTTAA
1 ATCACTTAA
32614 TAGTGTCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
28 6 0.19
29 2 0.06
30 24 0.75
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (29 bp):
ATCACTTAACTTATCTTTATACTCATTTA
Found at i:35437 original size:30 final size:29
Alignment explanation
Indices: 35362--35439 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 29
35352 ACTAGTGATT
* *
35362 AAAATGTAATTTTTGAAAGTTTAGTGGCT
1 AAAATGTAATTTTTAAAAGTTTAGTGGCA
* * * *
35391 AAAGTATAAATTTTAAAAGTTTAG-GAATCA
1 AAAATGTAATTTTTAAAAGTTTAGTG--GCA
35421 AAAATGTAATTTTTAAAAG
1 AAAATGTAATTTTTAAAAG
35440 GTTATATATT
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
28 1 0.03
29 20 0.53
30 17 0.45
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (29 bp):
AAAATGTAATTTTTAAAAGTTTAGTGGCA
Found at i:38225 original size:17 final size:17
Alignment explanation
Indices: 38203--38299 Score: 104
Period size: 17 Copynumber: 5.5 Consensus size: 17
38193 TGAATTCTAA
* *
38203 ATATTTACAGTCATCAT
1 ATATTTACAGTTATCAG
* *
38220 ATATTTTCAGTTATAAG
1 ATATTTACAGTTATCAG
38237 ATATTTACAGTTATCAG
1 ATATTTACAGTTATCAG
*
38254 ATGATTTTTCAGTTATCAG
1 AT-A-TTTACAGTTATCAG
*
38273 ATGATTTATAGTTATCAG
1 AT-ATTTACAGTTATCAG
*
38291 ATAATTACA
1 ATATTTACA
38300 AATATAAATT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
17 35 0.52
18 15 0.22
19 17 0.25
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.43
Consensus pattern (17 bp):
ATATTTACAGTTATCAG
Found at i:38268 original size:19 final size:19
Alignment explanation
Indices: 38223--38292 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
38213 TCATCATATA
*
38223 TTTTCAGTTATAAGAT-A-
1 TTTTCAGTTATCAGATGAT
*
38240 TTTACAGTTATCAGATGAT
1 TTTTCAGTTATCAGATGAT
38259 TTTTCAGTTATCAGATGAT
1 TTTTCAGTTATCAGATGAT
*
38278 TTAT-AGTTATCAGAT
1 TTTTCAGTTATCAGAT
38293 AATTACAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
17 14 0.30
18 12 0.26
19 21 0.45
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (19 bp):
TTTTCAGTTATCAGATGAT
Found at i:38287 original size:37 final size:36
Alignment explanation
Indices: 38203--38292 Score: 121
Period size: 34 Copynumber: 2.5 Consensus size: 36
38193 TGAATTCTAA
* *
38203 ATATTTACAGTCATCATAT-A-TTTTCAGTTATAAG
1 ATATTTACAGTTATCAGATGATTTTTCAGTTATAAG
*
38237 ATATTTACAGTTATCAGATGATTTTTCAGTTATCAG
1 ATATTTACAGTTATCAGATGATTTTTCAGTTATAAG
*
38273 ATGATTTATAGTTATCAGAT
1 AT-ATTTACAGTTATCAGAT
38293 AATTACAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
34 17 0.35
35 1 0.02
36 15 0.31
37 16 0.33
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.44
Consensus pattern (36 bp):
ATATTTACAGTTATCAGATGATTTTTCAGTTATAAG
Found at i:42395 original size:16 final size:16
Alignment explanation
Indices: 42374--42405 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
42364 TTGGAAATCT
42374 TATGGCTATGAGCCGG
1 TATGGCTATGAGCCGG
42390 TATGGCTATGAGCCGG
1 TATGGCTATGAGCCGG
42406 GTTGGGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.38, T:0.25
Consensus pattern (16 bp):
TATGGCTATGAGCCGG
Found at i:47412 original size:6 final size:6
Alignment explanation
Indices: 47396--47456 Score: 77
Period size: 6 Copynumber: 10.0 Consensus size: 6
47386 TGTGAAAAAG
* * * *
47396 ATATGAT ATATAT ATATAC ATATAT ACATAT ACATAT ATACAT ATATAT
1 ATAT-AT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
47445 ATATAT ATATAT
1 ATATAT ATATAT
47457 GTTATGTGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
6 44 0.92
7 4 0.08
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (6 bp):
ATATAT
Found at i:47418 original size:8 final size:8
Alignment explanation
Indices: 47401--47456 Score: 71
Period size: 8 Copynumber: 7.2 Consensus size: 8
47391 AAAAGATATG
*
47401 ATATATAT
1 ATATACAT
47409 ATATACAT
1 ATATACAT
47417 ATATAC--
1 ATATACAT
47423 ATATACAT
1 ATATACAT
47431 ATATACAT
1 ATATACAT
*
47439 ATATATAT
1 ATATACAT
*
47447 ATATATAT
1 ATATACAT
47455 AT
1 AT
47457 GTTATGTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 6 0.14
8 38 0.86
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATACAT
Found at i:47456 original size:14 final size:14
Alignment explanation
Indices: 47401--47455 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
47391 AAAAGATATG
47401 ATATATATATATAC
1 ATATATATATATAC
*
47415 ATATATACATATAC
1 ATATATATATATAC
* *
47429 ATATATACATATAT
1 ATATATATATATAC
47443 ATATATATATATA
1 ATATATATATATA
47456 TGTTATGTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATATATATATAC
Found at i:48471 original size:20 final size:20
Alignment explanation
Indices: 48446--48503 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
48436 ATCCTATTCC
**
48446 CTGGTAATCATACATTCCCA
1 CTGGTAATTTTACATTCCCA
48466 CTGGTAATTTTACATTCCCA
1 CTGGTAATTTTACATTCCCA
48486 CTGGTAATTTTACATTCC
1 CTGGTAATTTTACATTCC
48504 GTGAGCCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (20 bp):
CTGGTAATTTTACATTCCCA
Found at i:49287 original size:22 final size:23
Alignment explanation
Indices: 49262--49313 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
49252 CATTCGGTAC
49262 TGTTCAC-GATACTATTCA-ATAT
1 TGTTCACAG-TACTATTCAGATAT
*
49284 TGTTCACAGTACTGTTCATGATAT
1 TGTTCACAGTACTATTCA-GATAT
49308 TGTTCA
1 TGTTCA
49314 TACCGTATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 15 0.58
23 1 0.04
24 10 0.38
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (23 bp):
TGTTCACAGTACTATTCAGATAT
Found at i:49542 original size:18 final size:18
Alignment explanation
Indices: 49519--49556 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
49509 ATGTAGGAGC
49519 CAACCTCCACATCATGCT
1 CAACCTCCACATCATGCT
49537 CAACCTCCACATCATGCT
1 CAACCTCCACATCATGCT
49555 CA
1 CA
49557 GGAATGCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.45, G:0.05, T:0.21
Consensus pattern (18 bp):
CAACCTCCACATCATGCT
Found at i:49978 original size:87 final size:87
Alignment explanation
Indices: 49832--49994 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
49822 TATGTTATAT
49832 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
49897 AGCGATTATATAATAAAATAGG
66 AGCGATTATATAATAAAATAGG
* * *
49919 TATTTAACGGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
*
49984 AGCGCTTATAT
66 AGCGATTATAT
49995 TGACCTATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (87 bp):
TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
AGCGATTATATAATAAAATAGG
Found at i:53721 original size:120 final size:120
Alignment explanation
Indices: 53508--53754 Score: 431
Period size: 120 Copynumber: 2.1 Consensus size: 120
53498 TTTTTCTTCC
* *
53508 ATTCTGGACATAAAGTACTGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
53573 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
66 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
*
53628 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
* * * *
53693 CATAAAACTGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
66 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
53748 ATTCTGG
1 ATTCTGG
53755 GTTTCGATGT
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (120 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
Found at i:54199 original size:183 final size:183
Alignment explanation
Indices: 53628--54398 Score: 1395
Period size: 183 Copynumber: 4.2 Consensus size: 183
53618 GTACATTATA
*
53628 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
*
53693 CATAAAACTGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
53758 TCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
53811 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
53876 CATAAAACCGGTATA-TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
53940 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
53993 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
54058 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
54123 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATTGACACATTTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
54176 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* *
54241 CATAAAACCGGTATATTTATACCGATTATATTACAAAATTATCTATTACATTATAATTATGGGTT
66 CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
* * * *
54306 CCGATTTTTTTTCAA--TCGACACTTTTTGAAAAGGTATCGACACATTTTTCTTCC
131 CCGA---TGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
54360 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
54399 GAAAACTTTG
Statistics
Matches: 572, Mismatches: 12, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
182 181 0.32
183 310 0.54
184 76 0.13
186 5 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (183 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:55648 original size:12 final size:12
Alignment explanation
Indices: 55612--55675 Score: 65
Period size: 12 Copynumber: 5.3 Consensus size: 12
55602 GTTTGGATCA
* *
55612 TCATCATCATCA
1 TCATCTTCATCG
* *
55624 TCATCATCGTCG
1 TCATCTTCATCG
*
55636 TGATCTTCATCG
1 TCATCTTCATCG
55648 TCATCTTCATCG
1 TCATCTTCATCG
* *
55660 TCAGCTTCATCT
1 TCATCTTCATCG
55672 TCAT
1 TCAT
55676 TGACCGCTTG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.20, C:0.31, G:0.09, T:0.39
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:57512 original size:200 final size:200
Alignment explanation
Indices: 57140--57901 Score: 1319
Period size: 200 Copynumber: 3.8 Consensus size: 200
57130 AATTAAACAA
* * * ** *
57140 TGTCGATACA-TATTATATACCAATTCTCCCATAAAACAAGTATACTTATACCGGTTAGATTGAA
1 TGTCGATACATTATT-TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAA
* *
57204 AAATTACCTAATACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
65 AAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
*
57269 ATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTA
130 ATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTA
57334 CAAAAG
195 CAAAAG
* *
57340 TGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
57405 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
*
57470 TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
57535 AAAAG
196 AAAAG
*
57540 TGTCGATACATTATTTAGACCTATTATCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
* *
57605 AATTACCTATTACATTATACTTATGAGTTTCGATGTTTATCGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
*
57670 TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
57735 AAAAG
196 AAAAG
* *
57740 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACTGGTATACTTGTACCGATTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
*
57805 AATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
* *
57870 TCGATACTTTATGGTTGCACCATGTTTGCCAT
131 TCGACACTTTATGGTTGCACCCTGTTTGCCAT
57902 ATTGTAAATT
Statistics
Matches: 535, Mismatches: 26, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
200 531 0.99
201 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (200 bp):
TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
AAAAG
Found at i:58146 original size:18 final size:18
Alignment explanation
Indices: 58123--58183 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
58113 TCTCATTCAT
*
58123 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
58141 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
58160 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
58179 AATTA
1 AATTA
58184 ACCCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:58159 original size:19 final size:19
Alignment explanation
Indices: 58135--58183 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
58125 TTATATTCAC
58135 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
58154 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
58173 ATACAAAATTA
1 ATACAAAATTA
58184 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:60860 original size:20 final size:19
Alignment explanation
Indices: 60814--60860 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
60804 TCCAGTATCG
*
60814 TTTTACTGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
60833 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
60854 TTTTACC
1 TTTTACC
60861 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:61094 original size:181 final size:182
Alignment explanation
Indices: 60781--61253 Score: 682
Period size: 181 Copynumber: 2.6 Consensus size: 182
60771 CGTACTTACG
* * * * *
60781 AAAGTATCGACACTTTCAATATATCCAGTATCGTTTTACTGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACTGGTTT
* * *
60846 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
*
60911 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
60962 AAAGTATCGACACTTTCAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACTGGTTT
1 AAAGTATCGACACTTTCAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACTGGTTT
* * *
61027 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATTGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** *
61092 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * **
61144 AAAGTACCGACACTTT-AGATGTATTCGGTAGCGCTTTACCGGTTTTATCATTTCAATA-TCGGT
1 AAAGTATCGACACTTTCA-ATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACT-GGT
* * * *
61207 TTTGTTATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
64 TTTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
61254 AATTTGGATC
Statistics
Matches: 263, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
181 167 0.63
182 96 0.37
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGATACTGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:61423 original size:11 final size:11
Alignment explanation
Indices: 61407--61431 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61397 ATCCGGTAAT
61407 ACCGTATATTA
1 ACCGTATATTA
61418 ACCGTATATTA
1 ACCGTATATTA
61429 ACC
1 ACC
61432 CGCCTTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (11 bp):
ACCGTATATTA
Found at i:62231 original size:5 final size:5
Alignment explanation
Indices: 62221--62250 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
62211 TTAATGCTCC
62221 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
62251 GGGGCAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:63099 original size:83 final size:82
Alignment explanation
Indices: 62929--63149 Score: 232
Period size: 83 Copynumber: 2.7 Consensus size: 82
62919 TTTAGCGACG
* * * * **
62929 TTTTTATACAAACGCTGCTATAGACTTGTACTTTAGTGGCATTTGTGTTTACAAATGCCGCTATA
1 TTTTT-TACAAACGCCGCTATAGACTAGTACTTTAGTGACATTTGTGTATACAAACACCGCTATA
* *
62994 GGCTTGTACTTAGTAGAA
65 GACTCGTACTTAGTAGAA
*
63012 TTTTTGTACAAACGCCGCTATAGACTAGTACATTAGTGACATTT-T-TATACAAACACCGCTATA
1 TTTTT-TACAAACGCCGCTATAGACTAGTACTTTAGTGACATTTGTGTATACAAACACCGCTATA
**
63075 GACTCGTACATTAG-AGCCGT
65 GACTCGTAC-TTAGTAG--AA
* * * * *
63095 TTTTTTACAAACGCCGCTAAAGACTCGTACTTTAGTGGCGTTTGTGTTTACAAAC
1 TTTTTTACAAACGCCGCTATAGACTAGTACTTTAGTGACATTTGTGTATACAAAC
63150 GCCGTAAGTT
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
81 24 0.21
82 38 0.33
83 45 0.39
84 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (82 bp):
TTTTTTACAAACGCCGCTATAGACTAGTACTTTAGTGACATTTGTGTATACAAACACCGCTATAG
ACTCGTACTTAGTAGAA
Found at i:63137 original size:41 final size:41
Alignment explanation
Indices: 62929--63153 Score: 227
Period size: 41 Copynumber: 5.4 Consensus size: 41
62919 TTTAGCGACG
* * *
62929 TTTTTATACAAACGCTGCTATAGACTTGTACTTTAGTGGCA
1 TTTTTTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
* * * * *
62970 TTTGTGTTTACAAATGCCGCTATAGGCTTGTAC-TTAGTAGAA
1 TTT-T-TTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
* * * *
63012 TTTTTGTACAAACGCCGCTATAGACTAGTACATTAGTGACA
1 TTTTTTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
* * * * * *
63053 TTTTTATACAAACACCGCTATAGACTCGTACATTAGAGCCG
1 TTTTTTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
* *
63094 TTTTTTTACAAACGCCGCTAAAGACTCGTACTTTAGTGGCG
1 TTTTTTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
63135 TTTGTGTTTACAAACGCCG
1 TTT-T-TTTACAAACGCCG
63154 TAAGTTTAAA
Statistics
Matches: 154, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
40 23 0.15
41 83 0.54
42 12 0.08
43 36 0.23
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (41 bp):
TTTTTTTACAAACGCCGCTATAGACTCGTACTTTAGTGGCA
Found at i:65621 original size:43 final size:43
Alignment explanation
Indices: 65509--65702 Score: 202
Period size: 42 Copynumber: 4.6 Consensus size: 43
65499 GCGGTAATTA
* * *
65509 GCGGCTTTTGTTCTAAATACGCCGCTATAGAT-TCGACC-TTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCGACCTTTT
** *
65550 GTTGCGTTTGTTCC-AAAACGCCGCTATAGATCTTGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCGACCTTTT
* * *
65592 GCGGCGTTTGTACCAAAAACGCCACTATAGA-CCCGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCGACCTTTT
* *
65634 GCGGCGTTT-TCTCCAAAAATGCCGCTATAGATCTCGACCTATT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATCTCGACCTTTT
** * *
65677 GCGATGTTT-TTTCACAAACGCCGCTA
1 GCGGCGTTTGTTCCAAAAACGCCGCTA
65703 ACTTTAGCGG
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
40 16 0.13
41 16 0.13
42 62 0.49
43 32 0.25
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (43 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGATCTCGACCTTTT
Found at i:65804 original size:21 final size:22
Alignment explanation
Indices: 65778--65833 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
65768 AGCGACGCTT
65778 AAAAACGTCGCTATAGGACT-A
1 AAAAACGTCGCTATAGGACTAA
* *
65799 AAAAACGACGTTATAGGACTAA
1 AAAAACGTCGCTATAGGACTAA
65821 AAAAACGTCGCTA
1 AAAAACGTCGCTA
65834 AAGAATAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (22 bp):
AAAAACGTCGCTATAGGACTAA
Found at i:69555 original size:20 final size:21
Alignment explanation
Indices: 69532--69578 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
69522 GATGGTACTA
*
69532 ATATTGAACCT-TTGGTATCG
1 ATATTCAACCTGTTGGTATCG
69552 ATA-TCAACCTGTTGGTATCG
1 ATATTCAACCTGTTGGTATCG
69572 ATATTCA
1 ATATTCA
69579 CTGACTGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 6 0.25
20 15 0.62
21 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATTCAACCTGTTGGTATCG
Found at i:71765 original size:17 final size:18
Alignment explanation
Indices: 71727--71771 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
71717 AATAAATCGT
*
71727 AAAATCATTATACAATATA
1 AAAAT-ATTATACAAAATA
71746 AAAATATTATA-AAAATA
1 AAAATATTATACAAAATA
71763 AAAATATTA
1 AAAATATTA
71772 ATATAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 14 0.56
18 6 0.24
19 5 0.20
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATATTATACAAAATA
Found at i:72683 original size:18 final size:19
Alignment explanation
Indices: 72660--72707 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
72650 AGGATCTAAG
*
72660 AGTAAAATTAATATATA-T
1 AGTAAAATTAATATACAGT
72678 AGTAAAATTAATATACAGT
1 AGTAAAATTAATATACAGT
72697 -GTAAAATTAAT
1 AGTAAAATTAAT
72708 TTTACACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.35
Consensus pattern (19 bp):
AGTAAAATTAATATACAGT
Found at i:73017 original size:13 final size:13
Alignment explanation
Indices: 73001--73047 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
72991 AACAATTAAA
73001 CAAATCAATTTCT
1 CAAATCAATTTCT
* **
73014 CAAATCAACTAAT
1 CAAATCAATTTCT
73027 CAAATCAATTTCT
1 CAAATCAATTTCT
73040 CAAATCAA
1 CAAATCAA
73048 CTAATCAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (13 bp):
CAAATCAATTTCT
Found at i:73030 original size:26 final size:26
Alignment explanation
Indices: 73001--73059 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
72991 AACAATTAAA
73001 CAAATCAATTTCTCAAATCAACTAAT
1 CAAATCAATTTCTCAAATCAACTAAT
73027 CAAATCAATTTCTCAAATCAACTAAT
1 CAAATCAATTTCTCAAATCAACTAAT
73053 CAAATCA
1 CAAATCA
73060 GTTGGTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (26 bp):
CAAATCAATTTCTCAAATCAACTAAT
Found at i:73055 original size:13 final size:13
Alignment explanation
Indices: 73013--73059 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
73003 AATCAATTTC
73013 TCAAATCAACTAA
1 TCAAATCAACTAA
* **
73026 TCAAATCAATTTC
1 TCAAATCAACTAA
73039 TCAAATCAACTAA
1 TCAAATCAACTAA
73052 TCAAATCA
1 TCAAATCA
73060 GTTGGTCAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (13 bp):
TCAAATCAACTAA
Found at i:73068 original size:26 final size:26
Alignment explanation
Indices: 73001--73069 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
72991 AACAATTAAA
*
73001 CAAATCAATTTCTCAAATCAACTAAT
1 CAAATCAATTGCTCAAATCAACTAAT
*
73027 CAAATCAATTTCTCAAATCAACTAAT
1 CAAATCAATTGCTCAAATCAACTAAT
* *
73053 CAAATCAGTTGGTCAAA
1 CAAATCAATTGCTCAAA
73070 CCATCAACTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (26 bp):
CAAATCAATTGCTCAAATCAACTAAT
Found at i:75284 original size:2 final size:2
Alignment explanation
Indices: 75277--75355 Score: 158
Period size: 2 Copynumber: 39.5 Consensus size: 2
75267 TTTTTAAAAC
75277 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75319 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75356 CCCCCATCCC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 77 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:75546 original size:24 final size:24
Alignment explanation
Indices: 75519--75625 Score: 88
Period size: 24 Copynumber: 4.5 Consensus size: 24
75509 AAACGGAGAT
* *
75519 ATCAAAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
75543 ATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * * * *
75567 GTTAGGAATCAGAACATATTTCAG
1 ATCAGAAATCAAAACAGAATTCAG
** *
75591 ATCAGATGTCAAAACAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
75615 ATCAGAAATCA
1 ATCAGAAATCA
75626 GATAAAATAT
Statistics
Matches: 59, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:75625 original size:48 final size:48
Alignment explanation
Indices: 75519--75627 Score: 128
Period size: 48 Copynumber: 2.3 Consensus size: 48
75509 AAACGGAGAT
* * * *
75519 ATCAAAAATCAAAACATAATTCAGATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCAGAACATAATTCAGATCAGATATCAAAACAGAATCCAA
* * * * * *
75567 GTTAGGAATCAGAACATATTTCAGATCAGATGTCAAAACAGAATTCAA
1 ATCAGAAATCAGAACATAATTCAGATCAGATATCAAAACAGAATCCAA
75615 ATCAGAAATCAGA
1 ATCAGAAATCAGA
75628 TAAAATATTC
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.22
Consensus pattern (48 bp):
ATCAGAAATCAGAACATAATTCAGATCAGATATCAAAACAGAATCCAA
Found at i:78134 original size:15 final size:15
Alignment explanation
Indices: 78114--78147 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
78104 GGTCAACACC
78114 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
78129 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
78144 GGTC
1 GGTC
78148 GGGTCAACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (15 bp):
GGTCAACGGTCAACG
Found at i:78147 original size:8 final size:7
Alignment explanation
Indices: 78113--78144 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
78103 TGGTCAACAC
78113 CGGTCAA
1 CGGTCAA
78120 CGGTCAA
1 CGGTCAA
78127 CGGGTCAA
1 C-GGTCAA
78135 CGGTCAA
1 CGGTCAA
78142 CGG
1 CGG
78145 GTCGGGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.12
Consensus pattern (7 bp):
CGGTCAA
Found at i:78154 original size:13 final size:13
Alignment explanation
Indices: 78121--78164 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
78111 ACCGGTCAAC
*
78121 GGTCAACGGGTCAAC
1 GGTCAACGGGTC--G
78136 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
78149 GGTCAACGGTTCG
1 GGTCAACGGGTCG
78162 GGT
1 GGT
78165 TGGGTTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 15 0.56
15 12 0.44
ACGTcount: A:0.18, C:0.23, G:0.41, T:0.18
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:79116 original size:13 final size:13
Alignment explanation
Indices: 79095--79124 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79085 CGTGTTTTAT
79095 ATGCCTACACATA
1 ATGCCTACACATA
*
79108 ATGCTTACACATA
1 ATGCCTACACATA
79121 ATGC
1 ATGC
79125 AGCAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (13 bp):
ATGCCTACACATA
Found at i:80481 original size:17 final size:20
Alignment explanation
Indices: 80441--80483 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
80431 AACAAAAATG
*
80441 TAATAATAATATTAATGATA
1 TAATAATAATATTAATAATA
80461 TAATAATAATATATAATTAATA
1 TAATAATAATAT-TAA-TAATA
80483 T
1 T
80484 TTATAACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 3 0.15
22 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAATAATAATATTAATAATA
Found at i:80489 original size:13 final size:13
Alignment explanation
Indices: 80441--80482 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
80431 AACAAAAATG
*
80441 TAATA-ATAATAT
1 TAATATATAATAA
80453 TAATGATATAATAA
1 TAAT-ATATAATAA
80467 TAATATATAATTAA
1 TAATATATAA-TAA
80481 TA
1 TA
80483 TTTATAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 4 0.15
13 7 0.27
14 15 0.58
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (13 bp):
TAATATATAATAA
Found at i:80642 original size:33 final size:33
Alignment explanation
Indices: 80600--80664 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
80590 AACTTAATTC
80600 TCACTCAAAAATCAAATGCATGAGAATATGATG
1 TCACTCAAAAATCAAATGCATGAGAATATGATG
*
80633 TCACTCAAAAATCAAATGCATTAGAATATGAT
1 TCACTCAAAAATCAAATGCATGAGAATATGAT
80665 AGTAACCTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.26
Consensus pattern (33 bp):
TCACTCAAAAATCAAATGCATGAGAATATGATG
Found at i:83747 original size:51 final size:49
Alignment explanation
Indices: 83672--83784 Score: 149
Period size: 51 Copynumber: 2.3 Consensus size: 49
83662 AAATATATCA
* * * *
83672 ATTTTTTTATTAAACCTACCAAAAGATTAGTGTAATGATTATATTTGTTTTC
1 ATTTTTTTATTAAAACTACCAAAAGATTAATATAATGA-T-TATGT-TTTTC
83724 ATTTTTTTATTAAAAC-ACCAAAAGATTAATATAATGATTATGTTTTTC
1 ATTTTTTTATTAAAACTACCAAAAGATTAATATAATGATTATGTTTTTC
83772 A-TTTTTTATTAAA
1 ATTTTTTTATTAAA
83785 GCTTTTTATC
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
47 12 0.21
48 6 0.11
49 4 0.07
50 1 0.02
51 19 0.33
52 15 0.26
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.49
Consensus pattern (49 bp):
ATTTTTTTATTAAAACTACCAAAAGATTAATATAATGATTATGTTTTTC
Found at i:88055 original size:55 final size:55
Alignment explanation
Indices: 87926--88058 Score: 214
Period size: 55 Copynumber: 2.4 Consensus size: 55
87916 ATCAAATAAT
87926 AAAAGCAGCAGCGTTTAGCAAAATTTAAAAAGAAAAAACTAACAATTATTTTGTA
1 AAAAGCAGCAGCGTTTAGCAAAATTTAAAAAGAAAAAACTAACAATTATTTTGTA
*
87981 AAAAGCAGCAGAGTTTAGCAAAATTT-AAAAGAAAAAAACTAACAATTATTTTGTA
1 AAAAGCAGCAGCGTTTAGCAAAATTTAAAAAG-AAAAAACTAACAATTATTTTGTA
* **
88036 AAAAGCAGAAGCGACTAGCAAAA
1 AAAAGCAGCAGCGTTTAGCAAAA
88059 AATCAGAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 5 0.07
55 67 0.93
ACGTcount: A:0.53, C:0.11, G:0.14, T:0.22
Consensus pattern (55 bp):
AAAAGCAGCAGCGTTTAGCAAAATTTAAAAAGAAAAAACTAACAATTATTTTGTA
Found at i:89172 original size:22 final size:22
Alignment explanation
Indices: 89146--89193 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
89136 AGAAAATGTC
89146 TTTTAACATATATTAAAGAATT
1 TTTTAACATATATTAAAGAATT
* *
89168 TTTTAATATATTTTAAAGAATT
1 TTTTAACATATATTAAAGAATT
89190 TTTT
1 TTTT
89194 TGGATTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTTAACATATATTAAAGAATT
Found at i:91200 original size:16 final size:16
Alignment explanation
Indices: 91179--91209 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91169 TTTAACATCT
*
91179 TGACAGTAAAAAAATC
1 TGACAGCAAAAAAATC
91195 TGACAGCAAAAAAAT
1 TGACAGCAAAAAAAT
91210 TGTTGTTTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.16
Consensus pattern (16 bp):
TGACAGCAAAAAAATC
Found at i:91590 original size:28 final size:26
Alignment explanation
Indices: 91549--91616 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
91539 AATAATTCTA
91549 CACTTGAAA-TATTTTTTCATTAAATAAT
1 CACTT-AAATTATTTTTT-A-TAAATAAT
* *
91577 TACTTAAATTATTTTTTATATATAAT
1 CACTTAAATTATTTTTTATAAATAAT
91603 CA-TTAAATTATTTT
1 CACTTAAATTATTTT
91617 AAAAAATCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 12 0.33
26 8 0.22
27 4 0.11
28 12 0.33
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.53
Consensus pattern (26 bp):
CACTTAAATTATTTTTTATAAATAAT
Found at i:91673 original size:24 final size:24
Alignment explanation
Indices: 91627--91673 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
91617 AAAAAATCAA
*
91627 ATTATATATAAAAATAATTTAATG
1 ATTATATATAAAAATAATATAATG
91651 ATTATATAT-AAAATAAATATAAT
1 ATTATATATAAAAAT-AATATAAT
91674 TTAAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
ATTATATATAAAAATAATATAATG
Found at i:91717 original size:10 final size:10
Alignment explanation
Indices: 91698--91745 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
91688 TCTTCTTATT
*
91698 TATATTATAA
1 TATATAATAA
91708 TATATAATAA
1 TATATAATAA
91718 TATATAAT-A
1 TATATAATAA
91727 TATAT-ATATA
1 TATATAATA-A
91737 TATATAATA
1 TATATAATA
91746 TTATGGTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
8 2 0.06
9 6 0.18
10 23 0.68
11 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TATATAATAA
Found at i:91722 original size:2 final size:2
Alignment explanation
Indices: 91698--91746 Score: 56
Period size: 2 Copynumber: 27.5 Consensus size: 2
91688 TCTTCTTATT
91698 TA TA T- TA TA -A TA TA TA -A TA -A TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91735 TA TA TA TA -A TA T
1 TA TA TA TA TA TA T
91747 TATGGTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
1 6 0.15
2 35 0.85
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:91731 original size:19 final size:19
Alignment explanation
Indices: 91698--91746 Score: 77
Period size: 17 Copynumber: 2.7 Consensus size: 19
91688 TCTTCTTATT
91698 TATAT-TATAATATATA-A
1 TATATATATAATATATATA
91715 TA-ATATATAATATATATA
1 TATATATATAATATATATA
91733 TATATATATAATAT
1 TATATATATAATAT
91747 TATGGTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.07
17 13 0.45
18 3 0.10
19 11 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATATATATAATATATATA
Found at i:97110 original size:26 final size:26
Alignment explanation
Indices: 97080--97239 Score: 157
Period size: 26 Copynumber: 6.2 Consensus size: 26
97070 TCAAGAGTTA
97080 AATTATACTAGCAGCCCCTCCATTAT
1 AATTATACTAGCAGCCCCTCCATTAT
*
97106 AATTATATTAGCAGCCCCTCCATTAT
1 AATTATACTAGCAGCCCCTCCATTAT
* *
97132 AATTATATTAGCAGCCCCTCTATTAT
1 AATTATACTAGCAGCCCCTCCATTAT
* * ** *
97158 CATTTAATTCT-GACAG--GATCAAATTA-
1 -AATT-ATACTAG-CAGCCCCTC-CATTAT
*
97184 AATTATGCTAGCAGCCCCTCCATTAT
1 AATTATACTAGCAGCCCCTCCATTAT
* *
97210 AATTATATTAGCAGCCCCTCTATTAT
1 AATTATACTAGCAGCCCCTCCATTAT
97236 AATT
1 AATT
97240 TAATTCTGAC
Statistics
Matches: 110, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
24 7 0.06
25 8 0.07
26 81 0.74
27 8 0.07
28 6 0.05
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (26 bp):
AATTATACTAGCAGCCCCTCCATTAT
Found at i:97198 original size:78 final size:78
Alignment explanation
Indices: 97114--97288 Score: 314
Period size: 78 Copynumber: 2.2 Consensus size: 78
97104 ATAATTATAT
*
97114 TAGCAGCCCCTCCATTATAATTATATTAGCAGCCCCTCTATTATCATTTAATTCTGACAGGATCA
1 TAGCAGCCCCTCCATTATAATTATATTAGCAGCCCCTCTATTATAATTTAATTCTGACAGGATCA
97179 AATTAAATTATGC
66 AATTAAATTATGC
97192 TAGCAGCCCCTCCATTATAATTATATTAGCAGCCCCTCTATTATAATTTAATTCTGACAGGATCA
1 TAGCAGCCCCTCCATTATAATTATATTAGCAGCCCCTCTATTATAATTTAATTCTGACAGGATCA
97257 AATTAAATTATGC
66 AATTAAATTATGC
* * *
97270 TAGCATCCCCGCTATTATA
1 TAGCAGCCCCTCCATTATA
97289 TCTGTAGACA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 93 1.00
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.34
Consensus pattern (78 bp):
TAGCAGCCCCTCCATTATAATTATATTAGCAGCCCCTCTATTATAATTTAATTCTGACAGGATCA
AATTAAATTATGC
Found at i:97762 original size:24 final size:24
Alignment explanation
Indices: 97716--97761 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
97706 GAGAGGAAAT
97716 TCATACGAATATACAGAGATTTTG
1 TCATACGAATATACAGAGATTTTG
97740 TCATACGAA-ATACA-AGCATTTT
1 TCATACGAATATACAGAG-ATTTT
97762 TTCACGCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.10
23 10 0.48
24 9 0.43
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (24 bp):
TCATACGAATATACAGAGATTTTG
Found at i:98695 original size:3 final size:3
Alignment explanation
Indices: 98689--98765 Score: 58
Period size: 3 Copynumber: 27.3 Consensus size: 3
98679 TATATTTTTT
* * * *
98689 TTA TTA TCA TTA -TA TTA -TA TTA TT- TT- TTG TTT TTA GTGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
*
98731 TTA TTG TTA -TA TT- TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
98766 ATACATCACC
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 12 0.20
3 46 0.77
4 2 0.03
ACGTcount: A:0.27, C:0.01, G:0.05, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:98944 original size:33 final size:31
Alignment explanation
Indices: 98874--98947 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 31
98864 GTGGATTGTC
* * *
98874 TTTTGTTTTTACTATTTATTATTATTATCAT
1 TTTTATTTTTACTAATAATTATTATTATCAT
*
98905 TATTATTTTTACCTAATAATTATATATTAGT-AT
1 TTTTATTTTTA-CTAATAATTAT-TATTA-TCAT
98938 TTTTATTTTT
1 TTTTATTTTT
98948 TCATATTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 9 0.26
32 9 0.26
33 16 0.46
34 1 0.03
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTATTTTTACTAATAATTATTATTATCAT
Found at i:98963 original size:18 final size:18
Alignment explanation
Indices: 98937--98985 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
98927 TATATTAGTA
98937 TTTTTATTTT-TT-CATAT
1 TTTTTATTTTATTAC-TAT
98954 TTTATTATTTTATTACTAT
1 TTT-TTATTTTATTACTAT
98973 TTTTTATTTTATT
1 TTTTTATTTTATT
98986 TAGTTTTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.10
18 17 0.59
19 8 0.28
20 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTATTACTAT
Found at i:109532 original size:7 final size:7
Alignment explanation
Indices: 109520--109571 Score: 70
Period size: 7 Copynumber: 7.3 Consensus size: 7
109510 GCCCTAAATT
109520 GAAAAAA
1 GAAAAAA
109527 G-AAAAA
1 GAAAAAA
109533 GAAAAAA
1 GAAAAAA
*
109540 GAGGAAAA
1 GA-AAAAA
109548 GAAAAAA
1 GAAAAAA
109555 GAATAAAA
1 GAA-AAAA
109563 GAAAAAA
1 GAAAAAA
109570 GA
1 GA
109572 GAAGAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
6 6 0.15
7 21 0.52
8 13 0.32
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (7 bp):
GAAAAAA
Found at i:109547 original size:15 final size:14
Alignment explanation
Indices: 109520--109574 Score: 76
Period size: 15 Copynumber: 3.9 Consensus size: 14
109510 GCCCTAAATT
109520 GAAAAAAGA-AAAA
1 GAAAAAAGAGAAAA
109533 GAAAAAAGAGGAAAA
1 GAAAAAAGA-GAAAA
*
109548 GAAAAAAGAATAAAA
1 GAAAAAAG-AGAAAA
109563 GAAAAAAGAGAA
1 GAAAAAAGAGAA
109575 GAAAAATAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
13 9 0.24
14 3 0.08
15 24 0.65
16 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (14 bp):
GAAAAAAGAGAAAA
Found at i:109569 original size:22 final size:22
Alignment explanation
Indices: 109520--109571 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
109510 GCCCTAAATT
109520 GAAAAAAG-A-AAAAGAAAAAA
1 GAAAAAAGAATAAAAGAAAAAA
*
109540 GAGGAAAAGAA-AAAAGAATAAAA
1 GA-AAAAAGAATAAAAGAA-AAAA
109563 GAAAAAAGA
1 GAAAAAAGA
109572 GAAGAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 5 0.19
22 14 0.52
23 6 0.22
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (22 bp):
GAAAAAAGAATAAAAGAAAAAA
Found at i:112851 original size:30 final size:30
Alignment explanation
Indices: 112815--112901 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
112805 ATTTACTTTC
112815 TATATTTTTTATTTATTATCATTATATTA-
1 TATATTTTTTATTTATTATCATTATATTAT
* * *
112844 TATTATTTTTTGTTT-TTAGTGATTATTATTGT
1 TA-TATTTTTTATTTATTA-TCATTA-TATTAT
* *
112876 TATATATTTTA-TTATTATTATTATAT
1 TATATTTTTTATTTATTATCATTATAT
112902 ACATCACCTC
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
29 8 0.17
30 23 0.49
31 14 0.30
32 2 0.04
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.67
Consensus pattern (30 bp):
TATATTTTTTATTTATTATCATTATATTAT
Found at i:113083 original size:19 final size:18
Alignment explanation
Indices: 113059--113119 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
113049 TTACCTAATA
113059 ATTTTTTATTAGTATTTTT
1 ATTTTTTATTA-TATTTTT
*
113078 ATTTTTT-TCATA-TTTT
1 ATTTTTTATTATATTTTT
113094 ATTATTTTATTACTATTTTTT
1 ATT-TTTTATTA-TA-TTTTT
113115 ATTTT
1 ATTTT
113120 ATTTCGTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 7 0.20
17 6 0.17
18 4 0.11
19 9 0.26
20 2 0.06
21 7 0.20
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (18 bp):
ATTTTTTATTATATTTTT
Found at i:113101 original size:18 final size:18
Alignment explanation
Indices: 113062--113122 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
113052 CCTAATAATT
*
113062 TTTTATTAGTA-TTTTTA
1 TTTTATTACTATTTTTTA
*
113079 TTTT-TTTCATATTTTATTA
1 TTTTATTAC-TATTTT-TTA
113098 TTTTATTACTATTTTTTA
1 TTTTATTACTATTTTTTA
113116 TTTTATT
1 TTTTATT
113123 TCGTTTTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
16 2 0.05
17 6 0.16
18 13 0.35
19 13 0.35
20 3 0.08
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTATTACTATTTTTTA
Found at i:113102 original size:36 final size:34
Alignment explanation
Indices: 113062--113159 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 34
113052 CCTAATAATT
* *
113062 TTTTATTAGTATTTTTATTTTTTTCATATTTTATTA
1 TTTTATTACTATTTTTATTTTTTTCAT-TTTT-GTA
*
113098 TTTTATTACTATTTTTTATTTTATTTCGTTTTTGTA
1 TTTTATTACTA-TTTTTATTTT-TTTCATTTTTGTA
** *
113134 TTTGTATTTTTATTTTTTTTTTTTTC
1 TTT-TATTACTATTTTTATTTTTTTC
113160 GTTTAGTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
35 4 0.08
36 24 0.45
37 20 0.38
38 5 0.09
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (34 bp):
TTTTATTACTATTTTTATTTTTTTCATTTTTGTA
Found at i:113148 original size:37 final size:36
Alignment explanation
Indices: 113062--113163 Score: 111
Period size: 37 Copynumber: 2.8 Consensus size: 36
113052 CCTAATAATT
* * *
113062 TTTTATTAGTA-TTTTTATTTTTTTCATATTTTATTA
1 TTTTATTACTATTTTTTATTTTTTTCGT-TTTTAGTA
113098 TTTTATTACTATTTTTTATTTTATTTCGTTTTT-GTA
1 TTTTATTACTATTTTTTATTTT-TTTCGTTTTTAGTA
**
113134 TTTGTATTTTTATTTTTT-TTTTTTTCGTTT
1 TTT-TATTACTATTTTTTATTTTTTTCGTTT
113164 AGTTTTTTCT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
35 8 0.14
36 19 0.33
37 26 0.45
38 5 0.09
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (36 bp):
TTTTATTACTATTTTTTATTTTTTTCGTTTTTAGTA
Found at i:122108 original size:35 final size:36
Alignment explanation
Indices: 122034--122108 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 36
122024 TTTTTAAAAG
* * *
122034 TTTATAAATTTAAAATTAATTAAGACCCCGGATCGA
1 TTTATAAATTTAAAATTAATAAAGACCACGGATCAA
* *
122070 TTTATAAATTTAAATTTAA-AAAGACCTATGGAT-AA
1 TTTATAAATTTAAAATTAATAAAGACC-ACGGATCAA
122105 TTTA
1 TTTA
122109 AATTTACTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
35 11 0.33
36 22 0.67
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (36 bp):
TTTATAAATTTAAAATTAATAAAGACCACGGATCAA
Found at i:123267 original size:9 final size:9
Alignment explanation
Indices: 123253--123297 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
123243 AGATAAGACG
123253 AATTTATAA
1 AATTTATAA
123262 AATTTATAA
1 AATTTATAA
*
123271 AA--TAT-T
1 AATTTATAA
123277 AATTTATAA
1 AATTTATAA
123286 AATTTATAA
1 AATTTATAA
123295 AAT
1 AAT
123298 ATTAATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
6 2 0.06
7 3 0.10
8 3 0.10
9 23 0.74
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTTATAA
Found at i:123280 original size:24 final size:24
Alignment explanation
Indices: 123253--123312 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
123243 AGATAAGACG
123253 AATTTATAAAATTTATAAAATATT
1 AATTTATAAAATTTATAAAATATT
123277 AATTTATAAAATTTATAAAATATT
1 AATTTATAAAATTTATAAAATATT
*
123301 AATTTAAAAAAT
1 AATTTATAAAAT
123313 ATATGTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AATTTATAAAATTTATAAAATATT
Found at i:123282 original size:15 final size:15
Alignment explanation
Indices: 123262--123314 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
123252 GAATTTATAA
123262 AATTTATAAAATATT
1 AATTTATAAAATATT
123277 AATTTAT---A-A--
1 AATTTATAAAATATT
123286 AATTTATAAAATATT
1 AATTTATAAAATATT
*
123301 AATTTAAAAAATAT
1 AATTTATAAAATAT
123315 ATGTGTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
9 7 0.23
11 1 0.03
12 2 0.06
13 1 0.03
15 20 0.65
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AATTTATAAAATATT
Found at i:123518 original size:12 final size:12
Alignment explanation
Indices: 123501--123528 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
123491 TTTTCAAATT
123501 ATATTAATTATA
1 ATATTAATTATA
123513 ATATTAATTATA
1 ATATTAATTATA
123525 ATAT
1 ATAT
123529 ATCTGTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATTAATTATA
Found at i:126971 original size:6 final size:6
Alignment explanation
Indices: 126960--126984 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
126950 TCTCGTCTCG
126960 GGTCGT GGTCGT GGTCGT GGTCGT G
1 GGTCGT GGTCGT GGTCGT GGTCGT G
126985 CGAATTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.52, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:127425 original size:21 final size:21
Alignment explanation
Indices: 127057--127423 Score: 328
Period size: 21 Copynumber: 17.4 Consensus size: 21
127047 ATAACGTAAA
*
127057 AATTCGGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
* **
127078 AATTTAGAAAATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
* **
127099 AATTTAGAAAATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
* *
127120 AATTTGGAAAATCATAACG-TACGCG
1 AATTTGG---A-C-TATCGCAACGCG
* ** * *
127145 AATTTAGAAAATCGCAATGCA
1 AATTTGGACTATCGCAACGCG
*
127166 AATTTGGACTATCGCAA--TG
1 AATTTGGACTATCGCAACGCG
* *
127185 ATTTTAGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
*
127206 AATTCGGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
*
127227 AATTAT-GACTATCACAACGCG
1 AATT-TGGACTATCGCAACGCG
* **
127248 AATTTAGAAAATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
** *
127269 AATTTGGAAAATCGCAACGTG
1 AATTTGGACTATCGCAACGCG
* *
127290 AATTCGGACTATCGCAACACG
1 AATTTGGACTATCGCAACGCG
*
127311 AATTAGGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
* *
127332 AATTAGGACTATCACAACGCG
1 AATTTGGACTATCGCAACGCG
*
127353 AATTCGGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
*
127374 AATTCGGACTATCGCAACGCG
1 AATTTGGACTATCGCAACGCG
* ** *
127395 AATTTAGAAAATCGCAATGCG
1 AATTTGGACTATCGCAACGCG
127416 AATTTGGA
1 AATTTGGA
127424 AACTGAGTTG
Statistics
Matches: 286, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
19 15 0.05
20 4 0.01
21 251 0.88
22 1 0.00
24 1 0.00
25 11 0.04
26 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.22
Consensus pattern (21 bp):
AATTTGGACTATCGCAACGCG
Found at i:132253 original size:32 final size:32
Alignment explanation
Indices: 132217--132285 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
132207 ATTTAACGTG
* * *
132217 TTATTGTGACTAGATTATT-TTGTTACAATTTT
1 TTATTGTGA-AAGAATATTATTGTCACAATTTT
132249 TTATTGTGAAAGAATATTACTTGTCACAATTTT
1 TTATTGTGAAAGAATATTA-TTGTCACAATTTT
132282 TTAT
1 TTAT
132286 ATTGAGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 7 0.22
32 9 0.28
33 16 0.50
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (32 bp):
TTATTGTGAAAGAATATTATTGTCACAATTTT
Found at i:134427 original size:17 final size:19
Alignment explanation
Indices: 134392--134430 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 19
134382 AATTTTTTCT
134392 AAAATCAAGTTTCCCTTTA
1 AAAATCAAGTTTCCCTTTA
134411 AAAATCAA-TTT-CCTTTA
1 AAAATCAAGTTTCCCTTTA
134428 AAA
1 AAA
134431 TAAAATAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.45
18 3 0.15
19 8 0.40
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAATCAAGTTTCCCTTTA
Found at i:135348 original size:138 final size:139
Alignment explanation
Indices: 135201--135464 Score: 381
Period size: 139 Copynumber: 1.9 Consensus size: 139
135191 AGTTAAAAAC
* * * * *
135201 TTGTCACTATATAACA-TTTTTGCAC-AAAACAATTGGAAGAAATATTTTTAATAGTATAAGTTT
1 TTGTCACTATATAACATTTTTTACACTAAAA-AATAGGAAGAAATAGTTCTAATAGTATAAATTT
135264 TAATAATGATTAAAATATATAACTACAAAAATAATTAATTACAAAAAACTT-AAGTTTTATTAAT
65 TAATAATGATTAAAATATATAACTACAAAAATAATTAATTACAAAAAACTTGAA-TTTTATTAAT
135328 TACAATTTATT
129 TACAATTTATT
* * * *
135339 TTGTTACTATATAACATTTTTTACACTAAAAAATAGGGAGAAATGGTTCTGATAGTATAAATTTT
1 TTGTCACTATATAACATTTTTTACACTAAAAAATAGGAAGAAATAGTTCTAATAGTATAAATTTT
* * *
135404 CATAATGATTAAAATATATAAGTACAAAAATAATTTATTACAAAAAACTTGAATTTTATTA
66 AATAATGATTAAAATATATAACTACAAAAATAATTAATTACAAAAAACTTGAATTTTATTA
135465 TTTGATGTGA
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
138 15 0.14
139 90 0.81
140 6 0.05
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.39
Consensus pattern (139 bp):
TTGTCACTATATAACATTTTTTACACTAAAAAATAGGAAGAAATAGTTCTAATAGTATAAATTTT
AATAATGATTAAAATATATAACTACAAAAATAATTAATTACAAAAAACTTGAATTTTATTAATTA
CAATTTATT
Found at i:136280 original size:19 final size:20
Alignment explanation
Indices: 136258--136297 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
136248 AAAAAGCTAC
136258 TAATAGTGACAAAA-TTAAT
1 TAATAGTGACAAAATTTAAT
**
136277 TAATTTTGACAAAATTTAAT
1 TAATAGTGACAAAATTTAAT
136297 T
1 T
136298 TGTCATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (20 bp):
TAATAGTGACAAAATTTAAT
Found at i:137693 original size:18 final size:18
Alignment explanation
Indices: 137670--137704 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
137660 TAGCATAGGT
*
137670 TTGAAAACTAAAAATAAC
1 TTGAAAAATAAAAATAAC
*
137688 TTGAAAAATTAAAATAA
1 TTGAAAAATAAAAATAA
137705 AGTAAAAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
TTGAAAAATAAAAATAAC
Found at i:139290 original size:23 final size:25
Alignment explanation
Indices: 139244--139291 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
139234 TGTGCAATCC
*
139244 TAAAAATAACTAAGATAATTCAAAA
1 TAAAAATAACTAAGATAATCCAAAA
*
139269 TAAAAAT-TCTAA-ATAATCCAAAA
1 TAAAAATAACTAAGATAATCCAAAA
139292 AGATAATTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 4 0.19
25 7 0.33
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.25
Consensus pattern (25 bp):
TAAAAATAACTAAGATAATCCAAAA
Found at i:144914 original size:5 final size:5
Alignment explanation
Indices: 144904--145394 Score: 727
Period size: 5 Copynumber: 98.8 Consensus size: 5
144894 GATGTTTGTC
* * *
144904 TGTTA TGTTA TGTTA TGTTA TGTTA TGGTA TGGTA TGGTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
144954 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
145004 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
145054 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
145104 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
145154 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
145204 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
* * * * *
145254 TG-TA TGTTA TGTTA TG-TA TG-TA TGCTA TGCTA TGCTA TGATA TGCTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
* * * * * * * * * *
145301 TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
* * * * * * * *
145351 TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGCTA TGTT
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTT
145395 GATCTATGAA
Statistics
Matches: 479, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
4 12 0.03
5 467 0.97
ACGTcount: A:0.20, C:0.04, G:0.21, T:0.55
Consensus pattern (5 bp):
TGTTA
Found at i:152401 original size:9 final size:9
Alignment explanation
Indices: 152387--152420 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
152377 TAAAAGGGAA
152387 AAATAAAAT
1 AAATAAAAT
152396 AAATAAAAT
1 AAATAAAAT
152405 AAAT-AAAT
1 AAATAAAAT
152413 AAGATAAA
1 AA-ATAAA
152421 GGAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 15 0.65
10 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:152408 original size:13 final size:13
Alignment explanation
Indices: 152386--152420 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
152376 GTAAAAGGGA
152386 AAAATAAAATAAAT
1 AAAAT-AAATAAAT
152400 AAAATAAATAAAT
1 AAAATAAATAAAT
*
152413 AAGATAAA
1 AAAATAAA
152421 GGAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:152480 original size:2 final size:2
Alignment explanation
Indices: 152473--152507 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
152463 GAAAAAGGAA
152473 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
152508 CATCAAAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:152903 original size:2 final size:2
Alignment explanation
Indices: 152896--152969 Score: 141
Period size: 2 Copynumber: 37.5 Consensus size: 2
152886 TATTAAAGAA
152896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
152938 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
152970 ATAATAATAA
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 70 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:152982 original size:7 final size:7
Alignment explanation
Indices: 152962--153002 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
152952 ATATATATAT
152962 ATAATATA
1 ATAA-ATA
152970 AT-AATA
1 ATAAATA
152976 ATAAATA
1 ATAAATA
152983 AT-AA-A
1 ATAAATA
152988 ATAAATA
1 ATAAATA
152995 ATAAATA
1 ATAAATA
153002 A
1 A
153003 AGGGACTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
5 3 0.10
6 9 0.30
7 16 0.53
8 2 0.07
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAAATA
Found at i:152982 original size:15 final size:13
Alignment explanation
Indices: 152962--152999 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
152952 ATATATATAT
152962 ATAATATAATAATA
1 ATAATATAATAA-A
152976 ATAA-ATAATAAA
1 ATAATATAATAAA
152988 ATAA-ATAATAAA
1 ATAATATAATAAA
153000 TAAAGGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.54
13 7 0.29
14 4 0.17
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAATATAATAAA
Found at i:152996 original size:19 final size:18
Alignment explanation
Indices: 152962--153002 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
152952 ATATATATAT
*
152962 ATAATATAATAATAATAA
1 ATAATAAAATAATAATAA
152980 ATAATAAAATAAATAATAA
1 ATAATAAAAT-AATAATAA
152999 ATAA
1 ATAA
153003 AGGGACTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAATAAAATAATAATAA
Found at i:154283 original size:105 final size:105
Alignment explanation
Indices: 153984--155155 Score: 1715
Period size: 105 Copynumber: 11.3 Consensus size: 105
153974 CATTGTTCCA
* * **
153984 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCT-AGAACCGGGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-ATTGGGAAATTG-TTGTTGACAA
* * * * * *
154048 CCAGCCGTCCCTTTGTTGTGAAGTTGAACTTGTGTTGTCTCG
64 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
**
154090 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCTGA-A-T--GAAATT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
154150 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
154190 AGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGGGAAGTTGTTGTTGACAAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
*
154255 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
154295 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA-A-T--GAAATT-TTGCTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
154355 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
154395 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-A-T--GAAATT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
154455 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
154495 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTGTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAA-TTGTTGTTGACAAG
*
154559 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
**
154600 AGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGA-A-T--GAAATT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
* *
154660 AACGCTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
154700 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTGTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAA-TTGTTGTTGACAAG
*
154764 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
154805 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
154870 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * * *
154910 AATCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTG-TTGTTGACAAG
154975 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
155016 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTG-TTGTTGACAAG
* * * *
155081 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
155122 AGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
155156 CGCGGATGGC
Statistics
Matches: 987, Mismatches: 58, Indels: 39
0.91 0.05 0.04
Matches are distributed among these distances:
100 355 0.36
101 10 0.01
102 13 0.01
103 10 0.01
104 11 0.01
105 373 0.38
106 189 0.19
107 4 0.00
109 22 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAATTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:154337 original size:205 final size:207
Alignment explanation
Indices: 153984--155155 Score: 1706
Period size: 205 Copynumber: 5.7 Consensus size: 207
153974 CATTGTTCCA
* * * **
153984 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTAGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-GGATTGGGAAATTG-TTGTTGACAAC
* * * * *
154049 CAGCCGTCCCTTTGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGTTGTGAAG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
**
154114 TTGAAATTGAATCTGAA-T-GAAA-TTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
129 TTGAAATTGGCTCTGAATTGGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
154176 CTTGCGTTGTCTGG
194 CTTGCGTTGTCTGG
* * *
154190 AGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGGGAAGTTGTTGTTGACAAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-GGATTGGGAAATTGTTGTTGACAACC
*
154255 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
*
154320 TGAAATTGGCTCTGAA-T-GAAA-TTTTGCTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
130 TGAAATTGGCTCTGAATTGGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
154382 TTGCGTTGTCTGG
195 TTGCGTTGTCTGG
* * *
154395 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAAT--GAAATT-TTGTTGACAAGCA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAACCA
154456 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
154521 GAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
131 GAAATTGGCTCTGA-ATTGGAAAGTT-TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
*
154586 CTTGCATTGTCTGG
194 CTTGCGTTGTCTGG
** * *
154600 AGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCT-GAAT--GAAATT-TTGTTGACAAGCA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAACCA
* *
154661 ACGCTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
154726 GAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
131 GAAATTGGCTCTGA-ATTGGAAAGTT-TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
*
154791 CTTGCATTGTCTGG
194 CTTGCGTTGTCTGG
*
154805 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-GATTGGGAAATTGTTGTTGACAACC
* *
154870 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAATCCAATATCCTTCGCTGTGAAGT
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
* * *
154935 TGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
130 TGAAATTGGCTCTG-AATT-GGAAAGT-TTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTG
155000 AACTTGCGTTGTCTGG
192 AACTTGCGTTGTCTGG
* * *
155016 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-GATTGGGAAATTG-TTGTTGACAAC
* * * * * *
155081 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCCACGATATCCTCCGTCGTG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT-CCA--ATATCCTTCGTTGTG
*
155146 GAGTTGAAAT
126 AAGTTGAAAT
155156 CGCGGATGGC
Statistics
Matches: 896, Mismatches: 53, Indels: 25
0.92 0.05 0.03
Matches are distributed among these distances:
200 90 0.10
201 6 0.01
202 1 0.00
203 7 0.01
204 2 0.00
205 466 0.52
206 45 0.05
207 3 0.00
209 5 0.01
210 89 0.10
211 107 0.12
212 51 0.06
213 3 0.00
215 21 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (207 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGATTGGGAAATTGTTGTTGACAACCA
GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
GAAATTGGCTCTGAATTGGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACT
TGCGTTGTCTGG
Found at i:154530 original size:305 final size:310
Alignment explanation
Indices: 153984--155155 Score: 1799
Period size: 305 Copynumber: 3.8 Consensus size: 310
153974 CATTGTTCCA
* *
153984 AGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTAGAACCGGGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCT-GAA-C-TGAAATTGTTTGTTGACAA
* * * * *
154048 CCAGCCGTCCCTTTGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGTTGTGAA
62 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
**
154113 GTTGAAATTGAATCTGAA-TGAAA-TTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
127 GTTGAAATTGGCTCTGAATTGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
* *
154176 CTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGGGAAGT
192 CTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGT
154241 TGTTGTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
257 TGTTGTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
* * *
154295 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA-TGAAA-T-TTTGCTGACAAGCAG
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAACTGAAATTGTTTGTTGACAACCAG
*
154357 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTG
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
154422 AAATTGGCTCTGAA-TGAAA-TTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
131 AAATTGGCTCTGAATTGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
*
154485 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTT
196 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTT
*
154550 GTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
261 GTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
* * *
154600 AGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAA-TGAAA-T-TTTGTTGACAAGCAA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAACTGAAATTGTTTGTTGACAACCAG
*
154662 CGCTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
66 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
154727 AAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
131 AAATTGGCTCTGA-ATT-GAAAGTT-TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAAC
*
154792 TTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTT
193 TTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTT
* *
154857 GTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
258 GTTGTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
* * *
154910 AATCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG-AACT--GAAATTGTTTGTTGACAAC
154975 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
63 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
* * *
155040 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTT
128 TTGAAATTGGCTCTG-AATTGA-AAG-T-TTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTT
* * * * *
155105 GAACTTGTGTTGTCTCGAGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
189 GAACTTGCGTTGTCTGGAGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
155156 CGCGGATGGC
Statistics
Matches: 801, Mismatches: 41, Indels: 29
0.92 0.05 0.03
Matches are distributed among these distances:
305 378 0.47
306 2 0.00
307 5 0.01
308 4 0.00
309 2 0.00
310 193 0.24
311 37 0.05
312 2 0.00
314 4 0.00
315 3 0.00
316 94 0.12
317 51 0.06
318 4 0.00
320 22 0.03
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (310 bp):
AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAACTGAAATTGTTTGTTGACAACCAG
CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTG
AAATTGGCTCTGAATTGAAAGTTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTT
GTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
Found at i:155849 original size:68 final size:65
Alignment explanation
Indices: 155759--155916 Score: 210
Period size: 68 Copynumber: 2.4 Consensus size: 65
155749 AAGATATCTG
* * **
155759 TTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTA-AGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATT-TGTTTTAGA-GGAAATAAATTCAAAGA
155823 TTT
64 -TT
* *
155826 TGTGTTTCAAGAGTAACTGTCTCAAGGGAGACAAAATTTGTTTTAGAGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAGAGGAAATAAATTCAAAGAT
155891 T
65 T
*
155892 TTGTTTCAAGGGAAACTGTCTCAAG
1 TTGTTTCAAGAGAAACTGTCTCAAG
155917 ATAGACGAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
65 22 0.27
66 3 0.04
67 23 0.28
68 33 0.41
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAGAGGAAATAAATTCAAAGATT
Found at i:155893 original size:67 final size:67
Alignment explanation
Indices: 155746--155942 Score: 213
Period size: 65 Copynumber: 2.9 Consensus size: 67
155736 GGAAACGATC
* * * *
155746 TCAAAGATATCTGTTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAA
1 TCAAAGAT-TTTG-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT-TGTTTTAAGGGAAA
155811 TAAAT
63 TAAAT
** *
155816 TTGAAGATTTTGTGTTTCAAGAGTAACTGTCTCAAGGGAGACAAAATTTGTTTT-AGAGGAAATA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAG-GGAAATA
155880 AAT
65 AAT
* ** * *
155883 TCAAAGA-TTT-TGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC-AAAATTTGTTTTAAGGGAAA
155943 CTGTCTCAAG
Statistics
Matches: 109, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
65 36 0.33
66 11 0.10
67 21 0.19
68 32 0.29
69 3 0.03
70 6 0.06
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.31
Consensus pattern (67 bp):
TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAA
AT
Found at i:155943 original size:36 final size:36
Alignment explanation
Indices: 155892--156200 Score: 150
Period size: 36 Copynumber: 8.9 Consensus size: 36
155882 TTCAAAGATT
* *
155892 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAAC
155928 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * * * **** *
155964 TTAGTTCCAAAAGAAACTGTCTCAAGGGAAATGGTAT
1 TT-GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * **
156001 TTGTTTCAA-AGAAAACATAT-TC-----A-A-ATATT
1 TTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAAC
* *
156030 TTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAAC
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
** * * * ***
156066 TCATTTCAAGGGAAA-TGTTTTC-A-A-TG--TTTA-
1 TTGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAAC
* * *
156096 -TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATT
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-C
* **
156132 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGT
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
*
156168 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
156201 TGATGAGCAC
Statistics
Matches: 207, Mismatches: 43, Indels: 46
0.70 0.15 0.16
Matches are distributed among these distances:
28 2 0.01
29 29 0.14
30 5 0.02
31 2 0.01
32 1 0.00
33 1 0.00
34 3 0.01
35 10 0.05
36 95 0.46
37 59 0.29
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (36 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
Found at i:156147 original size:37 final size:37
Alignment explanation
Indices: 156096--156197 Score: 161
Period size: 36 Copynumber: 2.8 Consensus size: 37
156086 TCAATGTTTA
* * *
156096 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAGTT
*
156133 TGTTTCAAGGGAAACTGTCTCAAGAGAG-ACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAGTT
156169 TGTTTCAAGGGAAACTGTCTCAAGAGAGA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGA
156198 CAATGATGAG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 34 0.57
37 26 0.43
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAAGTT
Found at i:157085 original size:22 final size:22
Alignment explanation
Indices: 157060--157110 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
157050 TTGTGTTTGG
157060 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
157082 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
157104 TCAAAGG
1 TCAAAGG
157111 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:157743 original size:20 final size:21
Alignment explanation
Indices: 157717--157765 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
157707 CTTTTTGTTC
*
157717 CCTTTTTTATTTTTGTTCTTT
1 CCTTTTTTATTCTTGTTCTTT
* *
157738 -CTTTTTTGTTCTTGTTTTTT
1 CCTTTTTTATTCTTGTTCTTT
157758 CCTTTTTT
1 CCTTTTTT
157766 GCTTCTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.02, C:0.14, G:0.06, T:0.78
Consensus pattern (21 bp):
CCTTTTTTATTCTTGTTCTTT
Found at i:157773 original size:11 final size:10
Alignment explanation
Indices: 157736--157786 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
157726 TTTTTGTTCT
157736 TTCTTTTTTG
1 TTCTTTTTTG
157746 TTCTTGTTTT-
1 TTCTT-TTTTG
157756 TTCCTTTTTTG
1 TT-CTTTTTTG
*
157767 CTTCTTTTTTTT
1 -TTC-TTTTTTG
157779 TTCTTTTT
1 TTCTTTTT
157787 GCCCTTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
10 16 0.46
11 11 0.31
12 8 0.23
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (10 bp):
TTCTTTTTTG
Found at i:157788 original size:21 final size:22
Alignment explanation
Indices: 157726--157786 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 22
157716 CCCTTTTTTA
157726 TTTTTGTTCTTTCTTTTTTG-TTC
1 TTTTT-TT-TTTCTTTTTTGCTTC
* *
157749 TTGTTTTTTCCTTTTTTGCTTC
1 TTTTTTTTTTCTTTTTTGCTTC
157771 TTTTTTTTTTCTTTTT
1 TTTTTTTTTTCTTTTT
157787 GCCCTTTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 10 0.30
22 19 0.58
23 4 0.12
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTTCTTTTTTGCTTC
Found at i:160018 original size:9 final size:9
Alignment explanation
Indices: 160004--160033 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
159994 TAAAAGGGAA
160004 AAATAAAAT
1 AAATAAAAT
160013 AAATAAAAT
1 AAATAAAAT
*
160022 AAATAAGAT
1 AAATAAAAT
160031 AAA
1 AAA
160034 GGAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Done.