Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008153.1 Hibiscus syriacus cultivar Beakdansim tig00110719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58423

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2717--2768
20
2.6
20
96
0
95
28
25
23
23
1.99
3373--3433
17
3.4
17
69
20
52
18
24
8
49
1.74
3495--3869
113
3.3
111
83
8
377
28
18
13
39
1.89
3480--3871
117
3.5
110
81
10
399
28
18
14
38
1.90
3847--3889
18
2.5
17
92
7
70
18
20
6
53
1.67
3734--4003
130
2.1
133
89
3
415
27
20
12
40
1.88
4426--4575
22
7.1
22
76
8
141
40
10
15
34
1.80
4443--4572
20
6.3
20
79
7
143
42
9
16
32
1.79
4435--4575
42
3.4
42
83
5
169
41
9
16
32
1.80
4443--4572
62
2.1
62
91
0
206
42
9
16
32
1.79
5824--6044
74
3.0
74
84
5
268
30
20
17
32
1.95
9337--9378
22
2.0
22
90
4
68
4
16
0
78
0.91
9338--9379
8
5.7
7
79
20
50
2
16
0
80
0.81
12511--12547
14
2.6
15
83
12
51
62
10
10
16
1.55
12571--12611
6
6.0
7
78
16
50
56
9
17
17
1.67
16296--16376
3
28.0
3
85
12
116
65
0
1
33
1.01
16298--16393
25
4.1
24
76
14
92
66
0
1
32
0.99
16936--17073
21
6.8
20
79
16
96
27
26
16
29
1.97
17022--17075
19
2.8
19
91
2
90
22
35
12
29
1.91
19607--19741
18
6.8
19
73
16
105
27
34
17
20
1.95
19607--19741
40
3.4
40
96
0
243
27
34
17
20
1.95
23788--23920
60
2.2
60
84
5
164
33
24
4
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40489--40525
19
1.9
19
88
0
56
27
18
37
16
1.92
41111--41162
20
2.7
18
74
25
52
65
3
5
25
1.32
42980--43012
16
2.2
16
89
10
52
12
18
9
60
1.57
43032--43162
20
6.6
20
68
13
72
18
17
9
54
1.70
43036--43085
26
2.0
25
84
4
64
18
16
10
56
1.67
43017--43142
59
2.1
59
95
0
225
19
17
7
54
1.67
50911--51130
117
1.9
117
80
9
261
30
14
8
47
1.72
55719--55899
62
3.0
61
85
4
249
25
23
15
35
1.94
55944--56428
36
13.5
36
90
1
749
35
22
24
18
1.96

Tables:   1

The End!