genome.fa.s8154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008154.1 Hibiscus syriacus cultivar Beakdansim tig00110720_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185899

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10396--10432	19	1.9	19	88	0	56	27	18	37	16	1.92
11027--11078	20	2.7	18	74	25	52	65	3	5	25	1.32
12047--12141	45	2.1	45	86	0	127	26	5	11	56	1.55
12904--12936	16	2.2	16	89	10	52	12	18	9	60	1.57
12956--13086	20	6.6	20	68	13	72	18	17	9	54	1.70
12960--13009	26	2.0	25	84	4	64	18	16	10	56	1.67
12941--13066	59	2.1	59	95	0	225	19	17	7	54	1.67
20871--21092	117	1.9	117	80	9	256	29	13	8	47	1.73
25736--25973	61	3.9	62	82	5	263	26	23	15	34	1.94
25744--25973	121	1.9	121	82	7	288	26	23	15	34	1.95
25960--26444	36	13.5	36	90	2	751	35	22	24	18	1.95
35806--35882	26	2.8	28	80	7	77	50	7	2	38	1.45
35742--35945	29	7.1	29	79	6	139	49	18	2	30	1.60
35997--36034	20	1.9	20	88	0	58	28	31	26	13	1.93
43026--43208	29	6.3	29	76	3	125	49	15	2	32	1.59
43160--43215	29	1.9	29	92	0	94	46	23	3	26	1.68
44344--44394	18	2.8	18	81	3	57	45	13	0	41	1.44
44390--44498	25	4.2	25	79	12	103	37	6	1	54	1.37
44420--44615	55	3.8	55	70	23	163	38	6	2	53	1.39
44555--44638	29	2.9	28	82	12	89	33	4	2	59	1.31
44690--44802	43	2.6	43	98	0	217	54	0	6	38	1.25
44817--44868	18	2.8	18	91	2	77	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44911--44967	24	2.4	24	93	0	96	28	26	19	26	1.99
45510--45547	20	1.9	20	88	0	58	21	26	10	42	1.85
45968--46035	32	2.1	32	91	0	109	29	2	13	54	1.53
48951--49008	3	19.3	3	100	0	116	65	0	0	34	0.93
49597--49650	22	2.5	22	96	0	99	44	9	18	27	1.80
49980--50041	32	1.9	32	86	0	88	29	19	16	35	1.93
52086--52134	21	2.3	21	89	0	71	30	32	14	22	1.93
56164--56210	19	2.6	17	86	10	58	27	19	27	25	1.99
56180--56286	46	2.3	46	89	7	157	30	20	21	27	1.98
63008--63228	117	1.9	117	81	5	268	29	13	7	48	1.70
64540--64584	19	2.4	19	100	0	90	24	22	31	22	1.99
64540--64599	19	3.3	19	90	4	79	28	18	28	25	1.98
64990--65057	27	2.6	27	93	4	113	30	10	16	42	1.81
68756--68823	27	2.6	27	95	4	122	30	11	16	41	1.84
79335--79376	19	2.2	20	86	4	59	54	0	0	45	0.99
79806--79843	16	2.2	18	86	9	53	65	2	2	28	1.19
81379--81405	4	6.8	4	100	0	54	74	0	0	25	0.83
92418--92445	3	9.3	3	100	0	56	32	0	0	67	0.91
95807--95854	20	2.5	20	83	10	55	31	16	2	50	1.57
98869--98965	13	7.2	13	69	25	67	60	0	1	38	1.03
98872--98961	16	5.3	16	74	19	76	60	0	1	38	1.04
98873--98965	26	3.4	26	75	18	91	60	0	1	38	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98869--98961	34	2.8	34	80	14	113	60	0	1	38	1.04
98870--98955	35	2.2	41	82	17	114	60	0	0	39	0.97
98869--98968	53	2.0	53	81	13	122	61	0	1	38	1.03
101773--101830	29	2.0	29	100	0	116	24	6	24	44	1.77
108045--108191	61	2.4	60	81	2	168	34	17	4	42	1.70
111377--111436	18	3.3	18	65	17	52	23	11	11	53	1.70
111372--111444	36	2.0	36	100	0	146	24	10	10	53	1.68
113661--113795	18	7.5	18	70	9	96	32	22	3	41	1.71
113648--113793	36	4.1	37	84	5	167	34	22	3	39	1.71
114033--114157	31	4.0	31	89	4	182	39	23	18	19	1.93
115597--115648	20	2.6	20	90	0	77	28	21	17	32	1.96
117944--118078	18	7.5	18	71	9	105	32	22	3	40	1.72
117931--118076	36	4.1	36	86	1	195	34	23	3	39	1.72
118316--118471	31	5.0	31	91	1	233	40	22	16	20	1.91
119904--119954	20	2.5	20	90	0	75	29	17	19	33	1.95
122224--122358	18	7.5	18	73	9	114	32	22	3	41	1.71
122216--122356	36	3.9	36	86	5	187	33	21	2	41	1.68
122596--122782	31	6.0	31	91	1	277	39	21	17	21	1.92
124203--124257	20	2.8	20	88	0	83	25	21	21	30	1.98
126834--126889	20	2.8	20	77	17	64	66	1	7	25	1.27
126980--127107	21	6.2	20	69	20	68	62	0	4	32	1.21
126978--127039	27	2.3	27	81	10	74	64	0	3	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126994--127177	30	6.3	28	66	26	82	61	1	4	31	1.26
127167--127199	2	16.5	2	100	0	66	51	0	0	48	1.00
127202--127231	15	2.0	15	100	0	60	73	0	6	20	1.05
127308--127345	10	4.1	9	86	13	51	65	0	0	34	0.93
127762--127862	37	2.7	37	85	0	130	31	15	12	39	1.86
128616--130096	106	14.0	106	89	1	2120	23	17	24	34	1.96
130864--130914	22	2.3	22	86	0	66	17	11	27	43	1.84
131516--131582	16	4.2	15	80	10	71	2	8	5	82	0.94
131517--131574	14	3.9	14	81	18	57	1	10	6	81	0.95
131538--131583	18	2.5	17	83	13	56	2	10	4	82	0.89
135872--135926	19	2.9	19	74	15	60	65	1	7	25	1.28
136011--136077	21	3.0	21	72	24	57	67	0	4	28	1.10
136011--136145	22	6.4	21	70	18	77	64	0	5	29	1.20
136024--136191	22	7.6	22	68	19	68	64	1	4	29	1.24
136275--136305	2	15.5	2	100	0	62	51	0	0	48	1.00
136356--136398	4	11.0	4	85	5	61	72	0	0	27	0.85
136356--136429	12	6.4	12	81	9	73	64	0	0	35	0.94
136396--136424	2	14.5	2	100	0	58	51	0	0	48	1.00
137993--138032	21	1.9	22	90	10	66	12	10	40	37	1.77
138060--138102	21	2.0	21	95	0	77	27	27	20	23	1.99
138138--138180	21	2.0	21	100	0	86	13	27	44	13	1.83
139680--139719	21	1.9	22	90	10	66	12	10	40	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139747--139789	21	2.0	21	95	0	77	27	27	20	23	1.99
139825--139866	21	2.0	21	100	0	84	14	28	42	14	1.84
139900--139978	21	4.0	21	78	18	98	12	27	36	22	1.91
139901--139972	36	2.0	36	94	0	126	13	27	34	23	1.93
139922--139951	15	2.0	15	100	0	60	13	26	33	26	1.93
140068--140127	29	2.0	31	93	6	106	43	16	6	33	1.74
143220--143259	21	1.9	22	90	10	66	12	10	40	37	1.77
143287--143329	21	2.0	21	95	0	77	27	27	20	23	1.99
143365--143405	22	1.9	22	95	5	75	17	31	39	12	1.86
143442--143519	20	4.1	20	78	18	94	12	26	35	24	1.92
143463--143491	15	1.9	15	100	0	58	13	20	34	31	1.92
143609--143669	29	2.0	32	87	9	92	44	18	6	31	1.75
145043--145189	61	2.4	60	81	2	168	34	17	4	42	1.70
145320--145447	60	2.1	60	81	4	150	39	4	18	36	1.72
148729--148875	61	2.4	60	81	2	168	34	17	4	42	1.70
152620--152660	2	21.0	2	95	5	75	51	0	0	48	1.00
153989--154021	11	2.8	12	86	4	50	45	24	0	30	1.53
154171--154204	12	2.8	12	100	0	68	5	26	26	41	1.78
154220--154352	21	6.4	21	71	16	116	16	20	25	37	1.93
154262--154372	20	5.4	20	66	19	68	14	21	23	40	1.90
154282--154526	62	4.2	59	68	18	170	18	20	25	35	1.95
154192--154485	71	3.7	82	79	13	296	19	19	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154241--154375	41	3.3	41	96	0	243	16	20	23	39	1.92
154458--154526	21	3.3	21	67	18	63	18	18	26	36	1.94
154453--154573	41	3.0	41	93	0	206	16	21	24	37	1.94
154676--154717	6	7.2	6	94	5	77	33	50	16	0	1.46
155193--155219	5	5.4	5	100	0	54	0	40	22	37	1.54
155220--155259	6	6.7	6	100	0	80	0	17	50	32	1.47
155331--155403	20	3.6	20	74	3	74	42	23	17	16	1.89
155310--155427	41	2.9	41	88	2	130	39	23	16	20	1.91
155351--155424	21	3.6	21	72	3	78	36	25	16	21	1.94
158028--158057	14	2.1	14	93	0	51	43	0	6	50	1.28

Tables:   1   2