genome.fa.s8159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008159.1 Hibiscus syriacus cultivar Beakdansim tig00110728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104804

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625--675	17	3.1	17	81	16	54	5	13	0	80	0.89
636--678	10	4.7	9	81	13	52	2	11	0	86	0.67
13989--14113	25	5.0	25	97	1	225	27	15	20	36	1.93
14194--14251	3	20.0	3	76	13	59	67	1	3	27	1.17
20769--21174	205	2.0	195	89	5	609	58	4	7	29	1.45
21025--21062	8	5.0	8	87	9	53	52	7	0	39	1.31
22148--22179	3	10.7	3	100	0	64	68	0	0	31	0.90
22647--23315	105	6.4	105	95	0	1135	23	18	26	32	1.97
23507--23534	1	28.0	1	100	0	56	0	0	0	100	0.00
24126--24156	1	31.0	1	100	0	62	0	0	0	100	0.00
34881--34922	17	2.4	19	80	15	54	69	2	4	23	1.20
35152--35189	8	5.0	8	87	9	53	52	7	0	39	1.31
34896--35300	205	2.0	193	88	7	598	58	4	7	30	1.45
36278--36309	3	10.7	3	100	0	64	68	0	0	31	0.90
40234--40275	19	2.2	19	95	0	75	52	30	0	16	1.44
46826--46862	2	18.5	2	100	0	74	51	0	0	48	1.00
47022--47073	24	2.2	24	82	0	59	50	17	11	21	1.77
47042--47160	24	5.0	24	86	6	143	41	18	16	23	1.90
47045--47178	24	5.6	24	84	5	137	43	17	14	23	1.87
49623--49661	18	2.2	18	100	0	78	10	15	51	23	1.73
51722--51773	24	2.2	24	82	0	59	50	17	11	21	1.77
51738--51860	24	5.1	24	81	8	108	42	18	17	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54310--54348	7	5.4	7	87	6	60	25	25	33	15	1.95
54310--54351	22	1.9	22	95	0	75	23	26	33	16	1.96
54301--54348	15	3.1	15	85	8	62	25	25	33	16	1.96
54340--54369	13	2.3	13	94	0	51	13	23	43	20	1.86
68699--68730	2	16.0	2	100	0	64	50	0	50	0	1.00
71922--71972	26	2.0	26	92	0	84	39	13	0	47	1.43
73551--73601	2	25.5	2	100	0	102	49	0	0	50	1.00
74782--74825	21	2.1	21	100	0	88	47	18	4	29	1.68
79861--79930	2	35.0	2	100	0	140	50	0	0	50	1.00
80403--80494	31	2.9	31	85	12	125	43	0	0	56	0.99
80397--80474	2	42.5	2	78	16	71	43	0	0	56	0.99
81935--81970	15	2.4	15	90	9	56	72	0	0	27	0.85
81929--81967	12	3.2	13	92	7	64	74	0	0	25	0.82
82380--82621	102	2.3	102	83	6	288	41	11	19	26	1.87
82578--82673	37	2.7	36	79	4	113	42	14	19	22	1.88
82556--82654	37	2.5	39	82	8	112	44	17	19	19	1.87
86391--86475	21	3.9	21	77	11	82	15	24	37	22	1.93
90267--90306	21	1.9	21	85	10	55	35	10	2	52	1.48
92852--93153	101	2.9	106	81	11	370	24	18	23	33	1.97
97220--97271	9	5.2	10	80	11	54	69	0	1	28	0.99
97220--97290	21	3.4	21	81	11	67	66	1	1	30	1.09
97236--97278	18	2.4	18	81	11	52	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98118--98159	19	2.2	18	84	16	50	42	0	0	57	0.99
99355--99434	28	2.9	28	79	7	74	37	1	0	61	1.04
99564--99654	27	3.3	28	80	9	89	47	2	1	49	1.21
99586--99670	27	3.1	27	80	9	93	48	1	0	50	1.08
99638--99698	32	1.9	32	83	6	79	54	1	0	44	1.10
99711--99766	30	1.9	30	85	7	80	50	0	1	48	1.11
101243--101277	18	2.0	17	88	5	52	51	11	5	31	1.61

Tables:   1

The End!