Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008160.1 Hibiscus syriacus cultivar Beakdansim tig00110729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1466564
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 7
Found at i:260254 original size:17 final size:16
Alignment explanation
Indices: 260231--260279 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
260221 ATATTGTGTA
260231 AAATTAAATTTTAAAT
1 AAATTAAATTTTAAAT
* *
260247 ACAATTAAATATTTGACT
1 A-AATTAAAT-TTTAAAT
*
260265 AATTTAAATTTTAAA
1 AAATTAAATTTTAAA
260280 AGATAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 5 0.19
17 15 0.58
18 6 0.23
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (16 bp):
AAATTAAATTTTAAAT
Found at i:260877 original size:13 final size:14
Alignment explanation
Indices: 260849--260875 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
260839 AATATTTTAA
260849 AAATAATTTTTTTT
1 AAATAATTTTTTTT
260863 AAATAATTTTTTT
1 AAATAATTTTTTT
260876 AATTTTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AAATAATTTTTTTT
Found at i:263997 original size:15 final size:16
Alignment explanation
Indices: 263967--263999 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
263957 AATAGTTATC
*
263967 TTAAAAAATTATTTAA
1 TTAAAAAAGTATTTAA
263983 TTAAAAAAGTA-TTAA
1 TTAAAAAAGTATTTAA
263998 TT
1 TT
264000 TACTAATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TTAAAAAAGTATTTAA
Found at i:264037 original size:31 final size:30
Alignment explanation
Indices: 263980--264037 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 30
263970 AAAAATTATT
* * *
263980 TAATTAAAAAAGTATTAATTTACTAATGGA
1 TAATAAAAAAAGTAATAAGTTACTAATGGA
*
264010 TAATAAAAAAAGATAATAAGTTGCTAAT
1 TAATAAAAAAAG-TAATAAGTTACTAAT
264038 CTATTAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 11 0.48
31 12 0.52
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.33
Consensus pattern (30 bp):
TAATAAAAAAAGTAATAAGTTACTAATGGA
Found at i:270402 original size:20 final size:20
Alignment explanation
Indices: 270359--270416 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
270349 TTTGGTGCAG
***
270359 AGGGAATCGATTCCCCCTTT
1 AGGGAATCGATTCCCCCCAC
*
270379 AGGGAACCGATTCCCCCCAC
1 AGGGAATCGATTCCCCCCAC
*
270399 AGGGGAATCGATACCCCC
1 A-GGGAATCGATTCCCCC
270417 TGGGGTTCTG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.17
Consensus pattern (20 bp):
AGGGAATCGATTCCCCCCAC
Found at i:272743 original size:13 final size:14
Alignment explanation
Indices: 272709--272746 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
272699 AGTAATTTCA
272709 AATTTCAAAACTTG
1 AATTTCAAAACTTG
272723 TAATTTCAAAACTTG
1 -AATTTCAAAACTTG
272738 -ATTTCAAAA
1 AATTTCAAAA
272747 TATCAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.39
15 14 0.61
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (14 bp):
AATTTCAAAACTTG
Found at i:273951 original size:23 final size:23
Alignment explanation
Indices: 273925--273970 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
273915 GGTGAGCAAT
* *
273925 GAGCATCGAGCTTAATGAGTAAC
1 GAGCATCAAGCTCAATGAGTAAC
*
273948 GAGCATCAAGCTCAATGATTAAC
1 GAGCATCAAGCTCAATGAGTAAC
273971 AAGCTTAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (23 bp):
GAGCATCAAGCTCAATGAGTAAC
Found at i:274244 original size:60 final size:57
Alignment explanation
Indices: 274148--274324 Score: 151
Period size: 60 Copynumber: 2.9 Consensus size: 57
274138 TGGATCTGGA
* * * *
274148 GATGAAATTGGAAGT-TTCAAAAGTTT-GGGTACTAATTTAAAAGGATGGTCATGGTTTAAG
1 GATGAAATTGGAA-TATTTAAAAGTTTAAGG-ACTAATTTAAAAGAAT--T-ATAGTTTAAG
* *
274208 GATGAAATTGGAATATTTAAAAGTTTAAGGATTAATTTAGAATAAGAATTATATTTTAAG
1 GATGAAATTGGAATATTTAAAAGTTTAAGGACTAATTT--AA-AAGAATTATAGTTTAAG
* ** *
274268 GATGAAGTTAAAATATTTAAAAGTTTAATGACTAATTTAAAATGAGATTCATAGTTT
1 GATGAAATTGGAATATTTAAAAGTTTAAGGACTAATTTAAAA-GA-ATT-ATAGTTT
274325 GAAAACATAT
Statistics
Matches: 97, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
57 2 0.02
58 4 0.04
59 4 0.04
60 77 0.79
61 3 0.03
62 2 0.02
63 5 0.05
ACGTcount: A:0.41, C:0.03, G:0.19, T:0.37
Consensus pattern (57 bp):
GATGAAATTGGAATATTTAAAAGTTTAAGGACTAATTTAAAAGAATTATAGTTTAAG
Found at i:274250 original size:29 final size:29
Alignment explanation
Indices: 274201--274295 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
274191 GATGGTCATG
* *
274201 GTTTAAGGATGAAATTGGAATATTTAAAA
1 GTTTAAGGATGAATTTAGAATATTTAAAA
* * *
274230 GTTTAAGGATTAATTTAGAATAAGAATT-ATA
1 GTTTAAGGATGAATTTAGAAT---ATTTAAAA
* * *
274261 TTTTAAGGATGAAGTTAAAATATTTAAAA
1 GTTTAAGGATGAATTTAGAATATTTAAAA
274290 GTTTAA
1 GTTTAA
274296 TGACTAATTT
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
28 3 0.06
29 25 0.50
31 19 0.38
32 3 0.06
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (29 bp):
GTTTAAGGATGAATTTAGAATATTTAAAA
Found at i:276112 original size:21 final size:21
Alignment explanation
Indices: 276084--276125 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
276074 ATACTTTACC
276084 CTTTA-TTTTAAATAATTTAT
1 CTTTATTTTTAAATAATTTAT
*
276104 CTTTAATTTTTAACTAATTTAT
1 CTTT-ATTTTTAAATAATTTAT
276126 AATTATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 1 0.05
22 14 0.74
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
CTTTATTTTTAAATAATTTAT
Found at i:276142 original size:16 final size:16
Alignment explanation
Indices: 276123--276153 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
276113 TTAACTAATT
276123 TATAATTATATTTAGA
1 TATAATTATATTTAGA
276139 TATAATTATATTTAG
1 TATAATTATATTTAG
276154 TCATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TATAATTATATTTAGA
Found at i:281669 original size:28 final size:30
Alignment explanation
Indices: 281609--281669 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 30
281599 AAAATGATCA
* * *
281609 AAATGAAAATAATTCAAAAGTTTAGTGAGT
1 AAATGAAAATAATTCAAAAGTATAATGAAT
*
281639 AAATTAAAA-AATT-AAAAGTATAATGAAT
1 AAATGAAAATAATTCAAAAGTATAATGAAT
281667 AAA
1 AAA
281670 ATAGGGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 15 0.56
29 4 0.15
30 8 0.30
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.28
Consensus pattern (30 bp):
AAATGAAAATAATTCAAAAGTATAATGAAT
Found at i:282008 original size:27 final size:27
Alignment explanation
Indices: 281978--282040 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
281968 CATAAAATAT
281978 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
* * *
282005 ATATTTTTAAATTAAATTAATAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
*
282032 ATATATTTA
1 ATATTTTTA
282041 GTTAGTTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATGAAAATAAAAATAAA
Found at i:284159 original size:37 final size:36
Alignment explanation
Indices: 284087--284160 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
284077 GTTGGAAAAT
* * *
284087 ATTTATATATTTTCTTTAAAAATTTATATTCATAAA
1 ATTTATATATTTTCTTTAAAAATTAAAAATCATAAA
*
284123 ATTTATATAATTTTTTTTACAAAATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTA-AAAATTAAAAATCATAAA
284160 A
1 A
284161 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 8 0.25
37 15 0.47
38 9 0.28
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAATTAAAAATCATAAA
Found at i:285014 original size:131 final size:129
Alignment explanation
Indices: 284780--285031 Score: 432
Period size: 131 Copynumber: 1.9 Consensus size: 129
284770 TTTCAACAAA
284780 GACTAGGGAAATGCGTTCACTTCATGATAAGATTGAGAACAACTGAAAGCAGACAACCTTGAACT
1 GACTAGGGAAATGCGTTCACTTCATGATAAGATTGAGAACAACTGAAAGCAGACAACCTTGAACT
**
284845 GAAATTGCATTTCCAGGTCCACTACAATATACATAATGATATCACATGTGGAACAAAATACTGCT
66 GAAAACGCATTTCCAGGTCCACTACAATATACATAATGATATCAC--GTGGAACAAAATACTGCT
284910 T
129 T
* * * *
284911 GACTAGGGAAATGCGTTCACTTGATGATAAGATTGAGAACAAGTGACAGTAGACAACCTTGAACT
1 GACTAGGGAAATGCGTTCACTTCATGATAAGATTGAGAACAACTGAAAGCAGACAACCTTGAACT
284976 GAAAACGCATTTCCAGGTCCACTACAATATACATAATGATATCACGTGGAACAAAA
66 GAAAACGCATTTCCAGGTCCACTACAATATACATAATGATATCACGTGGAACAAAA
285032 GTATATATCA
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
129 11 0.10
131 104 0.90
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (129 bp):
GACTAGGGAAATGCGTTCACTTCATGATAAGATTGAGAACAACTGAAAGCAGACAACCTTGAACT
GAAAACGCATTTCCAGGTCCACTACAATATACATAATGATATCACGTGGAACAAAATACTGCTT
Found at i:297164 original size:20 final size:20
Alignment explanation
Indices: 297139--297188 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
297129 ATTCAATCGA
297139 TATCGATACCGAAGGGGAA-G
1 TATCGATACCGAA-GGGAAGG
297159 TATCGATACCGAAGGGAAGG
1 TATCGATACCGAAGGGAAGG
297179 TATCGATACC
1 TATCGATACC
297189 ATTCAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 5 0.17
20 24 0.83
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (20 bp):
TATCGATACCGAAGGGAAGG
Found at i:297758 original size:55 final size:55
Alignment explanation
Indices: 297611--297927 Score: 401
Period size: 55 Copynumber: 5.8 Consensus size: 55
297601 GTACTACAGG
* * *
297611 CACTTTGTGTGCAAATCCACGTAA-TCATCATGAGATGATGAATCACCATACACA
1 CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACACA
* *
297665 CACTTTGTG-GCAAATCCACAGAATTCATCATGAGTTGATGAATCACCATACACA
1 CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACACA
* **
297719 CACTTTGTGTGCAAATCCATGGAATTCATCATGAGTTGATGAATCACCGTACAGG
1 CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACACA
* * **
297774 CA-TTTCGTGTGCAAATCCACAGAAATT-ATCATGAGTTGATGAATCACTGTACATG
1 CACTTT-GTGTGCAAATCCAC-GGAATTCATCATGAGTTGATGAATCACCGTACACA
297829 CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACA-A
1 CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACACA
* * * * * * *
297883 GCACTATGTATACAAAACCACAGAGTTTATCATGAGTTGATGAAT
1 -CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAAT
297928 ACTGTATAGG
Statistics
Matches: 234, Mismatches: 22, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
53 12 0.05
54 55 0.24
55 159 0.68
56 8 0.03
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (55 bp):
CACTTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACACA
Found at i:297875 original size:165 final size:163
Alignment explanation
Indices: 297605--297950 Score: 446
Period size: 165 Copynumber: 2.1 Consensus size: 163
297595 CTAAGTGTAC
*
297605 TACAGGCACTTTGTGTGCAAATCCACGTAATCATCATGAGATGATGAATCACCATACACACACTT
1 TACAGGCACTTTGTGTGCAAATCCACGAAATCATCATGAGATGATGAATCACCATACACACACTT
* * *
297670 TGTGGCAAATCCACAGAATTCATCATGAGTTGATGAATCACCATACACA-CACTTTGTGTGCAAA
66 TGTGGCAAATCCACAGAATTCATCATGAGTTGATGAATCACCATACA-AGCACTATGTATACAAA
* **
297734 TCCATGGAATTCATCATGAGTTGATGAATCACCG
130 ACCACAGAATTCATCATGAGTTGATGAATCACCG
* * ** **
297768 TACAGGCA-TTTCGTGTGCAAATCCACAGAAATTATCATGAGTTGATGAATCACTGTACATGCAC
1 TACAGGCACTTT-GTGTGCAAATCCAC-GAAATCATCATGAGATGATGAATCACCATACACACAC
* *
297832 TTTGTGTGCAAATCCACGGAATTCATCATGAGTTGATGAATCACCGTACAAGCACTATGTATACA
64 TTTGTG-GCAAATCCACAGAATTCATCATGAGTTGATGAATCACCATACAAGCACTATGTATACA
* * *
297897 AAACCACAGAGTTTATCATGAGTTGATGAAT-ACTG
128 AAACCACAGAATTCATCATGAGTTGATGAATCACCG
* * *
297932 TATAGGCACTATATGTGCA
1 TACAGGCACTTTGTGTGCA
297951 TTTTAATAAA
Statistics
Matches: 157, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
162 3 0.02
163 22 0.14
164 53 0.34
165 79 0.50
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (163 bp):
TACAGGCACTTTGTGTGCAAATCCACGAAATCATCATGAGATGATGAATCACCATACACACACTT
TGTGGCAAATCCACAGAATTCATCATGAGTTGATGAATCACCATACAAGCACTATGTATACAAAA
CCACAGAATTCATCATGAGTTGATGAATCACCG
Found at i:299540 original size:109 final size:108
Alignment explanation
Indices: 299406--299648 Score: 310
Period size: 109 Copynumber: 2.2 Consensus size: 108
299396 TCACTACATA
* * *
299406 TGACCAAAATGCAAAAATACTCTAAACTTAGAGGGACTAA-ACAACAAATAACCCAAAAAAGACA
1 TGACCAAAATACAAAAATACGCTAAACTTAGAGGGACTAATA-AACAAATAACCCAAAAAACACA
* *
299470 TAACATGCACGAAAAATG-GTAAATACCAGATTTGGTTCCTACAGG
65 TAACATGCACGAAAAA-GAGAAAATACCAGATTTGGTACCTACA-G
* * * * **
299515 TGATCAGAATACAAAAACACGCTAAACTTAGAGGGACTAATAAACCAATAACCCAGTAAACACAT
1 TGACCAAAATACAAAAATACGCTAAACTTAGAGGGACTAATAAACAAATAACCCAAAAAACACAT
* *
299580 AACATGCACGAAAAAGAGAAAATAGCATATTTGGTACCTACAG
66 AACATGCACGAAAAAGAGAAAATACCAGATTTGGTACCTACAG
* *
299623 TGACCAAAATGCAAAAATGCGCTAAA
1 TGACCAAAATACAAAAATACGCTAAA
299649 TCTAAGGGGA
Statistics
Matches: 114, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
108 23 0.20
109 90 0.79
110 1 0.01
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.18
Consensus pattern (108 bp):
TGACCAAAATACAAAAATACGCTAAACTTAGAGGGACTAATAAACAAATAACCCAAAAAACACAT
AACATGCACGAAAAAGAGAAAATACCAGATTTGGTACCTACAG
Found at i:300441 original size:22 final size:22
Alignment explanation
Indices: 300382--300435 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
300372 TAGATTTCAA
* *
300382 TTTGGGCCCATTTTTGGGTTTGG
1 TTTGGGCCCA-GTTAGGGTTTGG
*
300405 TTTGGGCTCAGTTAGGGTTTGG
1 TTTGGGCCCAGTTAGGGTTTGG
300427 TTTGGGCCC
1 TTTGGGCCC
300436 GATTAGTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.06, C:0.15, G:0.37, T:0.43
Consensus pattern (22 bp):
TTTGGGCCCAGTTAGGGTTTGG
Found at i:300477 original size:3 final size:3
Alignment explanation
Indices: 300469--300507 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
300459 ATATTTTAAG
*
300469 TAA TAA TAA TAA TAA TAA TAA GTAA AAA T-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
300508 ATATAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:301297 original size:21 final size:21
Alignment explanation
Indices: 301273--301315 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
301263 TTTTGGCTGG
301273 TGTGATTATATGATTATGTTT
1 TGTGATTATATGATTATGTTT
* * *
301294 TGTGATTGTTTGATTGTGTTT
1 TGTGATTATATGATTATGTTT
301315 T
1 T
301316 TTAATGGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.60
Consensus pattern (21 bp):
TGTGATTATATGATTATGTTT
Found at i:302068 original size:27 final size:27
Alignment explanation
Indices: 302034--302093 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
302024 TAATTAAGAA
**
302034 AATTCTTACAGTGGTTTTACTGCTCCT
1 AATTCTTACAGTGAATTTACTGCTCCT
*
302061 AATTCTTATAGTGAATTTACTGCTCCT
1 AATTCTTACAGTGAATTTACTGCTCCT
302088 AATTCT
1 AATTCT
302094 GGTAACTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (27 bp):
AATTCTTACAGTGAATTTACTGCTCCT
Found at i:302350 original size:42 final size:41
Alignment explanation
Indices: 302268--302350 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
302258 TGATTTAGTA
* *
302268 AGTAGTCAGAAGAATTTAAGTAAAGGGGGCATATTGTTGCT
1 AGTAGTCAGAAGAATTTAAGTAAAGGGGGCATACTCTTGCT
* ** * *
302309 AGTAGTCAGAATAATTTCGGTAATAGGGGGTATGCTCTTGCT
1 AGTAGTCAGAAGAATTTAAGTAA-AGGGGGCATACTCTTGCT
302351 CTTGCTCAGG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 20 0.59
42 14 0.41
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (41 bp):
AGTAGTCAGAAGAATTTAAGTAAAGGGGGCATACTCTTGCT
Found at i:305479 original size:19 final size:19
Alignment explanation
Indices: 305455--305505 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
305445 GAATACAATA
305455 AGTGTATCGATACACAGGT
1 AGTGTATCGATACACAGGT
305474 AGTGTATCGATACACAGGT
1 AGTGTATCGATACACAGGT
305493 AGTGTATCGATAC
1 AGTGTATCGATAC
305506 CCCAAGAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (19 bp):
AGTGTATCGATACACAGGT
Found at i:305603 original size:20 final size:20
Alignment explanation
Indices: 305573--305627 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
305563 ACCAGTTAAG
*
305573 GGATGTATCGATACCACAGA
1 GGATATATCGATACCACAGA
* * * *
305593 GGGTATATCGATTCCTCATA
1 GGATATATCGATACCACAGA
*
305613 GGATATACCGATACC
1 GGATATATCGATACC
305628 TCTTCAAATG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (20 bp):
GGATATATCGATACCACAGA
Found at i:306243 original size:18 final size:18
Alignment explanation
Indices: 306191--306243 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
306181 GTCGAGGGTA
*
306191 AAAGTGGTCCTACGGGAT
1 AAAGTGGTCCTTCGGGAT
* *
306209 ATAA-TGATCCTTTGGGAT
1 A-AAGTGGTCCTTCGGGAT
*
306227 AAAGTGGTCATTCGGGA
1 AAAGTGGTCCTTCGGGA
306244 CAAGTGTCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.28
Consensus pattern (18 bp):
AAAGTGGTCCTTCGGGAT
Found at i:310883 original size:63 final size:63
Alignment explanation
Indices: 310784--310913 Score: 233
Period size: 63 Copynumber: 2.1 Consensus size: 63
310774 TTCTCAATAA
**
310784 TGTACATGGGTAATCCAAATACAAATTGAAGTGCAACTTTCGTAGACAAATGAGTTTCAAATG
1 TGTACATGGGTAATCCAAATACAAATTGAAGTGCAACTTGAGTAGACAAATGAGTTTCAAATG
*
310847 TGTACATGGGTAATCCAAATACAAATTGAAGTGCAACTTGAGTAGACAAATGAGTTTCATATG
1 TGTACATGGGTAATCCAAATACAAATTGAAGTGCAACTTGAGTAGACAAATGAGTTTCAAATG
310910 TGTA
1 TGTA
310914 TGACATGATC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (63 bp):
TGTACATGGGTAATCCAAATACAAATTGAAGTGCAACTTGAGTAGACAAATGAGTTTCAAATG
Found at i:320363 original size:12 final size:12
Alignment explanation
Indices: 320346--320384 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
320336 TCGATGCATC
320346 GATGCATGGACT
1 GATGCATGGACT
320358 GATGCAT---C-
1 GATGCATGGACT
320366 GATGCATGGACT
1 GATGCATGGACT
320378 GATGCAT
1 GATGCAT
320385 CGGTGCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 7 0.30
9 1 0.04
11 1 0.04
12 14 0.61
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (12 bp):
GATGCATGGACT
Found at i:320363 original size:20 final size:20
Alignment explanation
Indices: 320338--320392 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
320328 TTAATTCATC
320338 GATGCATCGATGCATGGACT
1 GATGCATCGATGCATGGACT
320358 GATGCATCGATGCATGGACT
1 GATGCATCGATGCATGGACT
*
320378 GATGCATCGGTGCAT
1 GATGCATCGATGCAT
320393 TCCTTTGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (20 bp):
GATGCATCGATGCATGGACT
Found at i:331197 original size:22 final size:22
Alignment explanation
Indices: 331167--331218 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
331157 TGCAAAATTA
* *
331167 CTTAGAATTATTGCATTAGATAG
1 CTTA-AATTATTGCACTAAATAG
331190 CTTAAATTATTGCACTAAATAG
1 CTTAAATTATTGCACTAAATAG
331212 CTTAAAT
1 CTTAAAT
331219 CATATTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (22 bp):
CTTAAATTATTGCACTAAATAG
Found at i:333923 original size:22 final size:22
Alignment explanation
Indices: 333897--333940 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
333887 AGATCTCGAC
333897 AAACCACTATTACATTTTATGT
1 AAACCACTATTACATTTTATGT
333919 AAACCACTATTACATTTTATGT
1 AAACCACTATTACATTTTATGT
333941 GTACCTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (22 bp):
AAACCACTATTACATTTTATGT
Found at i:334755 original size:41 final size:41
Alignment explanation
Indices: 334691--334885 Score: 230
Period size: 41 Copynumber: 4.8 Consensus size: 41
334681 TTAGTGGTGT
* * * * *
334691 CCGCTATAGACTCATTCTATAGTGGCATTTTTTTACAAATG
1 CCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATG
* * * *
334732 CCGCTATAGACTCCTGCTTTAGTGGTGTTTTTATACAAACG
1 CCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATG
* * * *
334773 ACACTATAGACTCGTGCTTTAGTGGTGTTTTTATACAAATG
1 CCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATG
* *
334814 CCGCTATAGACTTGTACTTTAGTGGCG-TTTTATACAAATT
1 CCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATG
* *
334854 CTGCTAAAGACTCGTACTTTAGTGGCGTTTTT
1 CCGCTATAGACTCGTACTTTAGTGGCGTTTTT
334886 GTTTACAAAC
Statistics
Matches: 133, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 36 0.27
41 97 0.73
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (41 bp):
CCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATG
Found at i:337365 original size:21 final size:21
Alignment explanation
Indices: 337296--337365 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
337286 TAAACTTTGA
*
337296 TTTATTATTATGGATTTCAAG
1 TTTATTGTTATGGATTTCAAG
* **
337317 TTTATTTTTATTAATTTCAAG
1 TTTATTGTTATGGATTTCAAG
*
337338 TTTATTGTTATGGATGTCAAG
1 TTTATTGTTATGGATTTCAAG
337359 TTTATTG
1 TTTATTG
337366 GATAATGCTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (21 bp):
TTTATTGTTATGGATTTCAAG
Found at i:337805 original size:82 final size:81
Alignment explanation
Indices: 337711--337861 Score: 196
Period size: 82 Copynumber: 1.9 Consensus size: 81
337701 GGAAAAAAAC
* *
337711 GCCGCTAAATATCATAAACTTTAGCCGCGTTTGGA-AAAAAACGACGTTAAATATCATAACCTTT
1 GCCGCTAAATATCATAAACTTTAGCCGCGTTTGGATAAAAAA-GACGCTAAA-AACATAACCTTT
337775 AGCGGCAATTTTACAAAT
64 AGCGGCAATTTTACAAAT
* * ** * * *
337793 GCCGCTAAATATCATTACCTTTAGTGGTGTTTGTATAAAAAAGCCGCTAAAAACATAACCTTTAG
1 GCCGCTAAATATCATAAACTTTAGCCGCGTTTGGATAAAAAAGACGCTAAAAACATAACCTTTAG
337858 CGGC
66 CGGC
337862 GTTTGTGAAC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 17 0.29
82 36 0.61
83 6 0.10
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (81 bp):
GCCGCTAAATATCATAAACTTTAGCCGCGTTTGGATAAAAAAGACGCTAAAAACATAACCTTTAG
CGGCAATTTTACAAAT
Found at i:337866 original size:41 final size:42
Alignment explanation
Indices: 337693--337867 Score: 180
Period size: 42 Copynumber: 4.2 Consensus size: 42
337683 AGATAAATAA
* *
337693 CGGCGTTTGGAAAAAAACGCCGCTAAATATCATAAACTTTAG
1 CGGCGTTTGTAAAAAAACGCCGCTAAATATCATAACCTTTAG
* * * *
337735 CCGCGTTTGGAAAAAAACGACGTTAAATATCATAACCTTTAG
1 CGGCGTTTGTAAAAAAACGCCGCTAAATATCATAACCTTTAG
* * * *
337777 CGGCAATTT-T--ACAAATGCCGCTAAATATCATTACCTTTAG
1 CGGC-GTTTGTAAAAAAACGCCGCTAAATATCATAACCTTTAG
* * *
337817 TGGTGTTTGTATAAAAAA-GCCGCTAAA-AACATAACCTTTAG
1 CGGCGTTTGTA-AAAAAACGCCGCTAAATATCATAACCTTTAG
337858 CGGCGTTTGT
1 CGGCGTTTGT
337868 GAACGACGTT
Statistics
Matches: 108, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
39 3 0.03
40 28 0.26
41 20 0.19
42 50 0.46
43 7 0.06
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (42 bp):
CGGCGTTTGTAAAAAAACGCCGCTAAATATCATAACCTTTAG
Found at i:338167 original size:69 final size:69
Alignment explanation
Indices: 338014--338167 Score: 159
Period size: 69 Copynumber: 2.2 Consensus size: 69
338004 GCTCCTGTGT
* * * * * *
338014 GAGTCACCCATAATAAATATGATTAGGTGATGTCGTGTGAGTCAGTCTAACCCTTTGGGGATCTC
1 GAGTCACCCAGAATAAATATGATTAAGTGATCTCGTGCGAGTCACTCTAACCCTTTGGAGATCTC
338079 GTAC
66 GTAC
* ** * *
338083 GAATCA-CTTGAAATAAATATGATTAAGTGCTCTCGTGCGAGTCACTCTAACCCTTTGGA-AGTT
1 GAGTCACCCAG-AATAAATATGATTAAGTGATCTCGTGCGAGTCACTCTAACCCTTTGGAGA-TC
*
338146 TCGTGC
64 TCGTAC
*
338152 TAGTCACCCAGAATAA
1 GAGTCACCCAGAATAA
338168 TCACAACTAA
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
68 2 0.03
69 62 0.94
70 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (69 bp):
GAGTCACCCAGAATAAATATGATTAAGTGATCTCGTGCGAGTCACTCTAACCCTTTGGAGATCTC
GTAC
Found at i:339457 original size:29 final size:29
Alignment explanation
Indices: 339415--339484 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
339405 ATAAATGAGT
* * *
339415 TTAATTGATTTTTTACT-AAGTTTGAGGGC
1 TTAATTAATATTTTA-TAAAGTTTGAGGAC
339444 TTAATTAATATTTTATAAAGTTTGAGGAC
1 TTAATTAATATTTTATAAAGTTTGAGGAC
*
339473 TTATTTAA-ATTT
1 TTAATTAATATTT
339485 AAAATATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.31, C:0.04, G:0.14, T:0.50
Consensus pattern (29 bp):
TTAATTAATATTTTATAAAGTTTGAGGAC
Found at i:348168 original size:65 final size:64
Alignment explanation
Indices: 348051--348258 Score: 219
Period size: 65 Copynumber: 3.2 Consensus size: 64
348041 TTTCAAAGTG
* * **
348051 ATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGGAATAAATTG-AACATCGAATGCATT
1 ATGCATCGATGCACCAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATGCATT
348114 TC
63 TC
* * *
348116 ATGCATCGATGCA-TATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCAAATGCAT
1 ATGCATCGATGCACCA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCAT
*
348178 TTG
62 TTC
* *
348181 ATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCATTTC
1 ATGCATCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
*
348245 ATGCATTGATGCAC
1 ATGCATCGATGCAC
348259 TCTTAGTGCA
Statistics
Matches: 120, Mismatches: 14, Indels: 19
0.78 0.09 0.12
Matches are distributed among these distances:
62 1 0.01
63 3 0.03
64 47 0.39
65 65 0.54
66 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (64 bp):
ATGCATCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
Found at i:351395 original size:65 final size:64
Alignment explanation
Indices: 351278--351485 Score: 228
Period size: 65 Copynumber: 3.2 Consensus size: 64
351268 TTTCAAAGTG
* * **
351278 ATGCACCGATGCACCAATCCATGCATCGATGCAC-CATGGAATAAATTG-AACATCGAATGCATT
1 ATGCATCGATGCACCAA-CCATGCATCGATGCACTCA-GG-CTATTTTGAAACATCGAATGCATT
351341 TC
63 TC
* * *
351343 ATGCATCGATGCA-TATACTATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCAAATGCAT
1 ATGCATCGATGCACCA-ACCATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCAT
*
351405 TTG
62 TTC
* *
351408 ATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCATTTC
1 ATGCATCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
351472 ATGCATCGATGCAC
1 ATGCATCGATGCAC
351486 TCTTAGTGCA
Statistics
Matches: 121, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
62 1 0.01
63 3 0.02
64 48 0.40
65 65 0.54
66 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (64 bp):
ATGCATCGATGCACCAACCATGCATCGATGCACTCAGGCTATTTTGAAACATCGAATGCATTTC
Found at i:354205 original size:27 final size:27
Alignment explanation
Indices: 354174--354254 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
354164 GGGATTCATT
354174 GTCATGTTTGATATTAATGGTTGTAAA
1 GTCATGTTTGATATTAATGGTTGTAAA
* ** * *
354201 GTCA---TTGACA-T--TGCATCTAATT
1 GTCATGTTTGATATTAATGGTTGTAA-A
354223 GTCATGTTTGATATTAATGGTTGTAAA
1 GTCATGTTTGATATTAATGGTTGTAAA
354250 GTCAT
1 GTCAT
354255 TGACATTGCA
Statistics
Matches: 37, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
21 6 0.16
22 4 0.11
23 1 0.03
24 5 0.14
25 5 0.14
26 1 0.03
27 9 0.24
28 6 0.16
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATGTTTGATATTAATGGTTGTAAA
Found at i:354208 original size:24 final size:24
Alignment explanation
Indices: 354181--354257 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
354171 ATTGTCATGT
354181 TTGATATTAATGGTTGTAAAGTCA
1 TTGATATTAATGGTTGTAAAGTCA
* * ** * *
354205 TTGACATTGCATCTAATTGTCATGT--
1 TTGATATT--A-ATGGTTGTAAAGTCA
354230 TTGATATTAATGGTTGTAAAGTCA
1 TTGATATTAATGGTTGTAAAGTCA
354254 TTGA
1 TTGA
354258 CATTGCATCT
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 8 0.22
23 1 0.03
24 11 0.31
25 7 0.19
26 1 0.03
27 8 0.22
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (24 bp):
TTGATATTAATGGTTGTAAAGTCA
Found at i:354228 original size:49 final size:49
Alignment explanation
Indices: 354171--354272 Score: 204
Period size: 49 Copynumber: 2.1 Consensus size: 49
354161 TAAGGGATTC
354171 ATTGTCATGTTTGATATTAATGGTTGTAAAGTCATTGACATTGCATCTA
1 ATTGTCATGTTTGATATTAATGGTTGTAAAGTCATTGACATTGCATCTA
354220 ATTGTCATGTTTGATATTAATGGTTGTAAAGTCATTGACATTGCATCTA
1 ATTGTCATGTTTGATATTAATGGTTGTAAAGTCATTGACATTGCATCTA
354269 ATTG
1 ATTG
354273 GATTATGCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (49 bp):
ATTGTCATGTTTGATATTAATGGTTGTAAAGTCATTGACATTGCATCTA
Found at i:358130 original size:18 final size:18
Alignment explanation
Indices: 358107--358156 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
358097 CTATGAAATT
358107 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
358125 TGTCCCGAAGGACCACTG
1 TGTCCCGAAGGACCACTA
358143 TGTCCCGAAGGACC
1 TGTCCCGAAGGACC
358157 GCGTAGACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.24, C:0.34, G:0.26, T:0.16
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:358974 original size:19 final size:19
Alignment explanation
Indices: 358950--359001 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
358940 CCCTTAATAT
358950 GTGCATCGATACACTGCTC
1 GTGCATCGATACACTGCTC
358969 GTGCATCGATACACTGCTC
1 GTGCATCGATACACTGCTC
*
358988 ATGCATCGATACAC
1 GTGCATCGATACAC
359002 AAATCACCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (19 bp):
GTGCATCGATACACTGCTC
Found at i:359159 original size:33 final size:33
Alignment explanation
Indices: 359111--359176 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
359101 CATCGATGCA
** *
359111 CACAACCCAGGAATTCCATTTGAGCCCAAAAAT
1 CACAACCCAAAAATTCCATATGAGCCCAAAAAT
*
359144 CACAACCCAAAAATTCCGTATGAGCCCAAAAAT
1 CACAACCCAAAAATTCCATATGAGCCCAAAAAT
359177 TCTTACTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.11, T:0.17
Consensus pattern (33 bp):
CACAACCCAAAAATTCCATATGAGCCCAAAAAT
Found at i:362496 original size:23 final size:24
Alignment explanation
Indices: 362454--362504 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
362444 CCTACTAGGG
* *
362454 ACTATGAAATTTGTCTCGAATGACC
1 ACTATGAAA-TTGTCCCGAAGGACC
362479 ACTATGAAA-TGTCCCGAAGGACC
1 ACTATGAAATTGTCCCGAAGGACC
362502 ACT
1 ACT
362505 GTGTCCCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 15 0.62
25 9 0.38
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (24 bp):
ACTATGAAATTGTCCCGAAGGACC
Found at i:365860 original size:64 final size:66
Alignment explanation
Indices: 365750--365875 Score: 177
Period size: 64 Copynumber: 1.9 Consensus size: 66
365740 AAATGCATTT
* * *
365750 CATGCATCGATGCACTCAGAGTTTTTATGGAAACATCAAATGCATTTGATGCATCGATGCACCAG
1 CATGCATCGATGCACTCAGAGTATTTATGGAAACATCAAATACATTTCATGCATCGATGCACCAG
365815 C
66 C
* *
365816 CATGCATCGATGCACTCTG-GCTATTT-T-GAAACATCGAATACATTTCATGCATCGATGCAC
1 CATGCATCGATGCACTCAGAG-TATTTATGGAAACATCAAATACATTTCATGCATCGATGCAC
365876 TCTTATTGCA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 30 0.56
65 2 0.04
66 22 0.41
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (66 bp):
CATGCATCGATGCACTCAGAGTATTTATGGAAACATCAAATACATTTCATGCATCGATGCACCAG
C
Found at i:366661 original size:21 final size:21
Alignment explanation
Indices: 366629--366668 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
366619 AACCACCCAG
*
366629 TATAGAGGGTATCGGTACTCC
1 TATAGAGGGTATCAGTACTCC
366650 TATAG-GGAGTATCAGTACT
1 TATAGAGG-GTATCAGTACT
366669 ACCTTTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (21 bp):
TATAGAGGGTATCAGTACTCC
Found at i:370388 original size:20 final size:20
Alignment explanation
Indices: 370365--370437 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
370355 CATATGAACA
*
370365 GTATCGGTACTGTTCATGAG
1 GTATCGATACTGTTCATGAG
*
370385 GTATCGATAATGTTCATGAG
1 GTATCGATACTGTTCATGAG
370405 GTATCGATACTGTTCATGAG
1 GTATCGATACTGTTCATGAG
370425 GTATCGATACTGT
1 GTATCGATACTGT
370438 AAGAACAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.36
Consensus pattern (20 bp):
GTATCGATACTGTTCATGAG
Found at i:370644 original size:4 final size:4
Alignment explanation
Indices: 370635--371294 Score: 1162
Period size: 4 Copynumber: 165.5 Consensus size: 4
370625 ACATATATAA
370635 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370683 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370731 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
370779 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT ATGT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370827 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370875 G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370922 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
370970 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
371018 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
371066 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
371114 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
371162 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT ATAT ATAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * * * * * *
371210 GTAT GTAC GTAT GTAT ATAT GTAT GTAC GTAT ATAT ATAC ATAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
371258 GTAT GTAT GT-T GTAT GTAT GCAT GCAT GCAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
371295 GTGTGTGTAA
Statistics
Matches: 636, Mismatches: 18, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
3 6 0.01
4 630 0.99
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:373795 original size:21 final size:22
Alignment explanation
Indices: 373771--373822 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
373761 TTAAAAACAT
373771 TAATCATATAAATATCATA-TA
1 TAATCATATAAATATCATATTA
* * *
373792 TAATTAAATTAATATCATATTA
1 TAATCATATAAATATCATATTA
373814 TAATACATA
1 TAAT-CATA
373823 GCTATATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 16 0.67
22 6 0.25
23 2 0.08
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATCATATAAATATCATATTA
Found at i:380217 original size:21 final size:19
Alignment explanation
Indices: 380176--380227 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
380166 CCACCAAGCT
380176 AACTTAATAACTTATTAAA
1 AACTTAATAACTTATTAAA
380195 AACTTAATAAAAC-TATTATAA
1 AACTTAAT--AACTTATTA-AA
380216 AACTTAAATAAC
1 AACTT-AATAAC
380228 ATTTTGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
19 8 0.28
20 8 0.28
21 10 0.34
22 3 0.10
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (19 bp):
AACTTAATAACTTATTAAA
Found at i:381349 original size:28 final size:30
Alignment explanation
Indices: 381293--381352 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 30
381283 GGTGAGTGTT
*
381293 ATTTGAAGTAATTAACCCTATATTCTATTA
1 ATTTGAAGTAATTAACCCTATATTATATTA
**
381323 ATTT-AAGTAATTAA-TTTATATTATATTA
1 ATTTGAAGTAATTAACCCTATATTATATTA
381351 AT
1 AT
381353 AAATCTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 13 0.48
29 10 0.37
30 4 0.15
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (30 bp):
ATTTGAAGTAATTAACCCTATATTATATTA
Found at i:387261 original size:2 final size:2
Alignment explanation
Indices: 387254--387286 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
387244 CATTTTCATG
387254 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
387287 GGTCCATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:388291 original size:23 final size:23
Alignment explanation
Indices: 388265--388322 Score: 89
Period size: 24 Copynumber: 2.5 Consensus size: 23
388255 AAAAATGCTC
*
388265 AAGATAATTCCTAAAAATCATAA
1 AAGATAATTCCTAAAAATCACAA
*
388288 AAGATAAATCCCTAAAAATCACAA
1 AAGAT-AATTCCTAAAAATCACAA
388312 AAGATAATTCC
1 AAGATAATTCC
388323 CCTAATTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 10 0.32
24 21 0.68
ACGTcount: A:0.55, C:0.17, G:0.05, T:0.22
Consensus pattern (23 bp):
AAGATAATTCCTAAAAATCACAA
Found at i:393924 original size:11 final size:10
Alignment explanation
Indices: 393904--393956 Score: 65
Period size: 9 Copynumber: 5.3 Consensus size: 10
393894 AAAAGGGAAA
393904 AAAGAAAAAG
1 AAAGAAAAAG
*
393914 AAACTAAAAAG
1 AAA-GAAAAAG
393925 TAAAGAAAAAG
1 -AAAGAAAAAG
393936 -AAGAAAAAG
1 AAAGAAAAAG
393945 -AAGAAAAAG
1 AAAGAAAAAG
393954 AAA
1 AAA
393957 AAGGAACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
9 18 0.47
10 5 0.13
11 12 0.32
12 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:393971 original size:7 final size:6
Alignment explanation
Indices: 393902--393969 Score: 52
Period size: 6 Copynumber: 11.5 Consensus size: 6
393892 CAAAAAGGGA
** * *
393902 AAAAAG AAAAAG -AAACT AAAAAG -TAAAG AAAAAG AAGAAA- AAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG
*
393948 AAAAAG AAAAAGG AACAAG AAA
1 AAAAAG AAAAA-G AAAAAG AAA
393970 CACATGTAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
5 9 0.19
6 30 0.64
7 8 0.17
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:395519 original size:36 final size:36
Alignment explanation
Indices: 395470--395567 Score: 151
Period size: 36 Copynumber: 2.7 Consensus size: 36
395460 CATTGAGACA
* * *
395470 GTCTCCCTCGAGACCGTTTCCCTTGAAACAAATTTT
1 GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTT
*
395506 GTCTCCCTTGAGACGGTTTCCCTTAAAACAAATTTT
1 GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTT
*
395542 GTCTCCCTTGAGACAGTCTCCCTTAA
1 GTCTCCCTTGAGACAGTTTCCCTTAA
395568 GACAGTTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.34
Consensus pattern (36 bp):
GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTT
Found at i:395561 original size:51 final size:51
Alignment explanation
Indices: 395506--395618 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
395496 AACAAATTTT
*
395506 GTCTCCCTTGAGACGGTTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACA
1 GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACA
* * ** *
395557 GTCTCCCTTAAGACAGTTTCCCTTGAAAGGAATTTTGTCTCCCTTGAGACG
1 GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACA
*
395608 GTTTCCCTTGA
1 GTCTCCCTTGA
395619 AACAAATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.35
Consensus pattern (51 bp):
GTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACA
Found at i:395562 original size:15 final size:15
Alignment explanation
Indices: 395542--395582 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
395532 AACAAATTTT
395542 GTCTCCCTTGAGACA
1 GTCTCCCTTGAGACA
*
395557 GTCTCCCTTAAGACA
1 GTCTCCCTTGAGACA
*
395572 GTTTCCCTTGA
1 GTCTCCCTTGA
395583 AAGGAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.32
Consensus pattern (15 bp):
GTCTCCCTTGAGACA
Found at i:395597 original size:36 final size:36
Alignment explanation
Indices: 395557--395654 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 36
395547 CCTTGAGACA
* **
395557 GTCTCCCTTAAGACAGTTTCCCTTGAAAGGAATTTT
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
*
395593 GTCTCCCTTGAGACGGTTTCCCTTGAAACAAATTTT
1 GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
* * *
395629 ATCTCCCTTGAGACAGTCTCCATTGA
1 GTCTCCCTTGAGACAGTTTCCCTTGA
395655 GATAGTCTGC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (36 bp):
GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTT
Found at i:395654 original size:15 final size:14
Alignment explanation
Indices: 395634--395673 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
395624 ATTTTATCTC
395634 CCTTGAGACAGTCT
1 CCTTGAGACAGTCT
*
395648 CCATTGAGATAGTCT
1 CC-TTGAGACAGTCT
395663 GCCTTGAGACA
1 -CCTTGAGACA
395674 ATTTCATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (14 bp):
CCTTGAGACAGTCT
Found at i:395668 original size:87 final size:87
Alignment explanation
Indices: 395416--395674 Score: 335
Period size: 87 Copynumber: 3.0 Consensus size: 87
395406 TTTAAAGAAG
* * * * *
395416 ATTTTATCTCGCTTGAGACAGTTTCCC--GAAA-ATATTTTTGTCTCCATTGAGACAGTCTCCCT
1 ATTTTGTCTCCCTTGAGACGGTTTCCCTTGAAACA-AATTTTGTCTCCCTTGAGACAGTCTCCCT
* *
395478 CGAGACCGTTTCCCTTGAAACAA
65 TGAGACAGTTTCCCTTGAAACAA
*
395501 ATTTTGTCTCCCTTGAGACGGTTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTT
1 ATTTTGTCTCCCTTGAGACGGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTT
* **
395566 AAGACAGTTTCCCTTGAAAGGA
66 GAGACAGTTTCCCTTGAAACAA
* *
395588 ATTTTGTCTCCCTTGAGACGGTTTCCCTTGAAACAAATTTTATCTCCCTTGAGACAGTCTCCATT
1 ATTTTGTCTCCCTTGAGACGGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTT
* * * *
395653 GAGATAGTCTGCCTTGAGACAA
66 GAGACAGTTTCCCTTGAAACAA
395675 TTTCATTTGA
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
85 24 0.16
87 125 0.83
88 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (87 bp):
ATTTTGTCTCCCTTGAGACGGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCTCCCTT
GAGACAGTTTCCCTTGAAACAA
Found at i:395724 original size:39 final size:39
Alignment explanation
Indices: 395665--395756 Score: 148
Period size: 39 Copynumber: 2.4 Consensus size: 39
395655 GATAGTCTGC
* * *
395665 CTTGAGACAATTTCATTTGAAACAGAAGATTTTATCTCG
1 CTTGAGATAGTTTCACTTGAAACAGAAGATTTTATCTCG
*
395704 CTTGAGATTGTTTCACTTGAAACAGAAGATTTTATCTCG
1 CTTGAGATAGTTTCACTTGAAACAGAAGATTTTATCTCG
395743 CTTGAGATAGTTTC
1 CTTGAGATAGTTTC
395757 GCTCAAAACA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (39 bp):
CTTGAGATAGTTTCACTTGAAACAGAAGATTTTATCTCG
Found at i:395766 original size:39 final size:39
Alignment explanation
Indices: 395684--395775 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 39
395674 ATTTCATTTG
* **
395684 AAACAGAAGATTTTATCTCGCTTGAGATTGTTTCACTTG
1 AAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCA
*
395723 AAACAGAAGATTTTATCTCGCTTGAGATAGTTTCGCTCA
1 AAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCA
* *
395762 AAACACAATATTTT
1 AAACAGAAGATTTT
395776 TAGAAACTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (39 bp):
AAACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCA
Found at i:395865 original size:43 final size:43
Alignment explanation
Indices: 395797--396243 Score: 331
Period size: 43 Copynumber: 10.4 Consensus size: 43
395787 CCTGATTTTC
* * * * *
395797 AGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGT
1 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
* * ** * *
395840 AGAGGTTTCTTGAGGACAAGTTTGAGGGACTATTTTAATATAT
1 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
* * * *
395883 AGGGGTTCCTTGATGACACA-CTTGAGGGACCAACGTGATATGT
1 AGGGGTTTCTTGAGGACA-AGTTTGAGGGACCATCGTGATATGT
* * * ** * * * *
395926 AGGGGTTCCTTG-GTGACAA--CTAAGAAACTAAGCATGAT-TTT
1 AGGGGTTTCTTGAG-GACAAGTTTGAGGGAC-CATCGTGATATGT
* * * *
395967 CAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCGTGATATGT
1 -AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
396011 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
1 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
396054 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
1 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
* * * * * *
396097 AGGGGTTCCTTAATGATACACG--TGAGGGACCAACATGATATGT
1 AGGGGTTTCTTGA-G-GACAAGTTTGAGGGACCATCGTGATATGT
* * ** * * * * *
396140 AGGGG-TTCATTG-GTGACAA--CTAAGAAACTAAGCATGATTTTT
1 AGGGGTTTC-TTGAG-GACAAGTTTGAGGGAC-CATCGTGATATGT
396182 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
1 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
* *
396225 AGGGGTTCCTTGATGACAA
1 AGGGGTTTCTTGAGGACAA
396244 CTAAGAAAAT
Statistics
Matches: 315, Mismatches: 72, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
41 16 0.05
42 46 0.15
43 234 0.74
44 15 0.05
45 4 0.01
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (43 bp):
AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGT
Found at i:396081 original size:171 final size:172
Alignment explanation
Indices: 395777--396245 Score: 583
Period size: 171 Copynumber: 2.7 Consensus size: 172
395767 CAATATTTTT
*
395777 AGAAACTAAGCCTGATTTTCAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGTAG
1 AGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGTAG
* * ** * *
395842 AGGTTTCTTGAGGACAAGTTTGAGGGACTATTTTAATATATAGGGGTTCCTTGATGACACACTTG
66 GGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACA-ACTTG
**
395907 AGGGACCAACGTGATATGTAGGGGTTCCTTGGTGACA-AC-TA
130 AGGGACCAACGTGATATGTAGGGGTTCCTTAATGACACACGTA
*
395948 AGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCGTGATATGTAG
1 AGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGTAG
* * *
396013 GGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTTCTTGAGGACAAGTTTG
66 GGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAA-CTTG
* * *
396078 AGGGACCATCGTGATATGTAGGGGTTCCTTAATGATACACGTG
130 AGGGACCAACGTGATATGTAGGGGTTCCTTAATGACACACGTA
** * * ** * * * * * * *
396121 AGGGACCAA-CATGATATGT-AGGGG-TTCATTGGTGACAA-C-TAAGAAACTAAGCATGATTTT
1 AGAAACTAAGCATGAT-TTTCAGGGGTTTC-TTGAAGAAAAGCTTGAGAGAC-CATCATGATATG
396181 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAACT
63 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAACT
396246 AAGAAAATGA
Statistics
Matches: 259, Mismatches: 33, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
170 8 0.03
171 222 0.86
172 20 0.08
173 9 0.03
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (172 bp):
AGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGTAG
GGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAACTTGA
GGGACCAACGTGATATGTAGGGGTTCCTTAATGACACACGTA
Found at i:396166 original size:214 final size:214
Alignment explanation
Indices: 395797--396243 Score: 687
Period size: 214 Copynumber: 2.1 Consensus size: 214
395787 CCTGATTTTC
*
395797 AGGGGTTTCTTGAAGAAAAGCTTGAGAGACCATCATGATATGTAGAGGTTTCTTGAGGACAAGTT
1 AGGGGTTTCTTGAAGACAAGCTTGAGAGACCATCATGATATGTAGAGGTTTCTTGAGGACAAGTT
* ** * * *
395862 TGAGGGACTATTTTAATATATAGGGGTTCCTTGATGACACACTTGAGGGACCAACGTGATATGTA
66 TGAGGGACCATCGTAATATATAGGGGTTCCTTAATGACACACGTGAGGGACCAACATGATATGTA
*
395927 GGGGTTCCTTGGTGACAACTAAGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTG
131 GGGGTTCATTGGTGACAACTAAGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTG
395992 AGAGACCATCGTGATATGT
196 AGAGACCATCGTGATATGT
* * * * *
396011 AGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTTCTTGAGGACAAGTT
1 AGGGGTTTCTTGAAGACAAGCTTGAGAGACCATCATGATATGTAGAGGTTTCTTGAGGACAAGTT
* * *
396076 TGAGGGACCATCGTGATATGTAGGGGTTCCTTAATGATACACGTGAGGGACCAACATGATATGTA
66 TGAGGGACCATCGTAATATATAGGGGTTCCTTAATGACACACGTGAGGGACCAACATGATATGTA
* * * *
396141 GGGGTTCATTGGTGACAACTAAGAAACTAAGCATGATTTTTAGGGGTTTCTTGAGGACAAGTTTG
131 GGGGTTCATTGGTGACAACTAAGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTG
*
396206 AGGGACCATCGTGATATGT
196 AGAGACCATCGTGATATGT
* *
396225 AGGGGTTCCTTGATGACAA
1 AGGGGTTTCTTGAAGACAA
396244 CTAAGAAAAT
Statistics
Matches: 210, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
214 210 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (214 bp):
AGGGGTTTCTTGAAGACAAGCTTGAGAGACCATCATGATATGTAGAGGTTTCTTGAGGACAAGTT
TGAGGGACCATCGTAATATATAGGGGTTCCTTAATGACACACGTGAGGGACCAACATGATATGTA
GGGGTTCATTGGTGACAACTAAGAAACTAAGCATGATTTTCAGGGGTTTCTTGAAGAAAAGCTTG
AGAGACCATCGTGATATGT
Found at i:396221 original size:85 final size:84
Alignment explanation
Indices: 396010--396265 Score: 241
Period size: 85 Copynumber: 3.0 Consensus size: 84
396000 TCGTGATATG
396010 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTTCTTGAG-GACAAG
1 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGG-TTCTTG-GTGACAA-
* * ** * * * * *
396074 TTTGAGGGAC-CATCGTGATATG
63 -CTAAGAAACTAAGCATGATTTT
* * * * * *
396096 TAGGGGTTCCTTAATGATACACG--TGAGGGACCAACATGATATGTAGGGGTTCATTGGTGACAA
1 TAGGGGTTTCTTGA-G-GACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTC-TTGGTGACAA
396159 CTAAGAAACTAAGCATGATTTT
63 CTAAGAAACTAAGCATGATTTT
*
396181 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGATGACAACT
1 TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTT-CTTGGTGACAACT
* * *
396246 AAGAAAATGAGCTTGATTTT
65 AAGAAACTAAGCATGATTTT
396266 CAAGAGTTTC
Statistics
Matches: 137, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
83 4 0.03
84 6 0.04
85 77 0.56
86 45 0.33
87 1 0.01
88 4 0.03
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (84 bp):
TAGGGGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGGGGTTCTTGGTGACAACTA
AGAAACTAAGCATGATTTT
Found at i:396490 original size:127 final size:130
Alignment explanation
Indices: 396284--396560 Score: 400
Period size: 127 Copynumber: 2.1 Consensus size: 130
396274 TCTTAATGAT
* * * *
396284 TAAGTCCTCCAGGCCATCAGTAAGTCTTTCGAGCATGATGTGTAAATCCTTTGGGCCATCCATAA
1 TAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCATGATGTGTAAATCCTTCGGGCCATCCATAA
*
396349 GACCTTCAGTGCAGGATATTTTC-A-A-ATTTAAGAAACTAAGCCTTCAAGGGTTTCTTGGTTTG
66 GACCTTCAGTGCAGGATATTTTCAAGAGATTTAAGAAACTAAGCCTTCAAGGGTTTCTTGATTTG
* *
396411 TAAGTCCTTTGGGCCATCAGTAAATCTTTCGAGCATGATGCT-TAAGTCCTTCGGGCCATCCATA
1 TAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCATGATG-TGTAAATCCTTCGGGCCATCCATA
* * **
396475 AGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACTAAGCCTTCGGGGGTTTCTTGAT
65 AGACCTTCAGTGCAGGATATTTTC-AA-GAGATTTAAGAAACTAAGCCTTCAAGGGTTTCTTGAT
396540 TTG
128 TTG
396543 TAAGTCCTTCGGGCCATC
1 TAAGTCCTTCGGGCCATC
396561 CATAAGACCT
Statistics
Matches: 132, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
127 79 0.60
128 1 0.01
129 1 0.01
131 1 0.01
132 50 0.38
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (130 bp):
TAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCATGATGTGTAAATCCTTCGGGCCATCCATAA
GACCTTCAGTGCAGGATATTTTCAAGAGATTTAAGAAACTAAGCCTTCAAGGGTTTCTTGATTTG
Found at i:396654 original size:89 final size:90
Alignment explanation
Indices: 396453--396678 Score: 411
Period size: 89 Copynumber: 2.5 Consensus size: 90
396443 GCATGATGCT
396453 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACT
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACT
*
396518 AAGCCTTCGGGGGTTTCTTGATTTG
66 AAGCCTTCAGGGGTTTCTTGATTTG
396543 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGA-TTTAGAAACT
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACT
396607 AAGCCTTCAGGGGTTTCTTGATTTG
66 AAGCCTTCAGGGGTTTCTTGATTTG
* *
396632 TAAGTCCTTCGGGCCATCCATAAGACCTTC-GGGCAGGGTGTTTTCAA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAA
396679 TATTTTTGAT
Statistics
Matches: 133, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
88 15 0.11
89 64 0.48
90 54 0.41
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (90 bp):
TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTTAGAAACT
AAGCCTTCAGGGGTTTCTTGATTTG
Found at i:407926 original size:8 final size:8
Alignment explanation
Indices: 407903--407949 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
407893 ATGATCAATG
407903 ATATATGTT
1 ATATATG-T
*
407912 TTATATGT
1 ATATATGT
407920 ATATATGT
1 ATATATGT
**
407928 ATATATAA
1 ATATATGT
407936 ATATATGT
1 ATATATGT
407944 ATATAT
1 ATATAT
407950 TTAAGTATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
8 26 0.81
9 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (8 bp):
ATATATGT
Found at i:407945 original size:24 final size:24
Alignment explanation
Indices: 407913--407966 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
407903 ATATATGTTT
407913 TATATGTATATATGTATA-TATAAA
1 TATATGTATATATGTA-AGTATAAA
* *
407937 TATATGTATATATTTAAGTATATA
1 TATATGTATATATGTAAGTATAAA
407961 TATATG
1 TATATG
407967 CATGTGTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (24 bp):
TATATGTATATATGTAAGTATAAA
Found at i:414451 original size:3 final size:3
Alignment explanation
Indices: 414443--414501 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
414433 AATGTAAAAT
*
414443 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
414491 ATA ATA ATA AT
1 ATA ATA ATA AT
414502 TTAAAACCTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:414931 original size:139 final size:139
Alignment explanation
Indices: 414675--415317 Score: 824
Period size: 139 Copynumber: 4.6 Consensus size: 139
414665 GTCATTTGGA
** * *
414675 GATGATTTTGGAGACAACATGGTTCCTACATGATGAGAAAGTCTGGTTATCTGAGGATGACGCTG
1 GATGA-TTTGGAGACAACACAGTTCCTACATGATGAGAAAGTCTGATTATCTGAGGATGACACTG
* * ** * * *
414740 CTCATACGTGTTGAGGATATCTGGTCACTGGACGACATTGTTCCTAAGTGATGAGGACGTCTAGC
65 CTCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGATGTATAGC
414805 CATCTTTAGG
130 CATCTTTAGG
*
414815 GATGATTTGGAGACAACACAGTTCCTACATGATGAGAAAGTCTGATTGTCTGAGGATGACACTGC
1 GATGATTTGGAGACAACACAGTTCCTACATGATGAGAAAGTCTGATTATCTGAGGATGACACTGC
* * * *
414880 TCATACGTGTTGAGGAGATCTAGTCGGTGGACGACAATGTTCATACGTGATGAGGATGTATAGCC
66 TCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGATGTATAGCC
*
414945 GTCTTTAGG
131 ATCTTTAGG
* * * * *
414954 GATGATTTGGAGACAACACAGTTCTTACGTGATGACG-AAGTCTAATTTTTTGAGGATGACGA-T
1 GATGATTTGGAGACAACACAGTTCCTACATGATGA-GAAAGTCTGATTATCTGAGGATGAC-ACT
* **
415017 GCTCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTATTCCTATATGATGAGGATGTATAG
64 GCTCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGATGTATAG
415082 CCATCTTTAGG
129 CCATCTTTAGG
* * * * * *
415093 GATGATTTGGAGATAACACAGTTCCTACGTGATGAGGAAGTCTGATTGTCTGAGAATGACACTAC
1 GATGATTTGGAGACAACACAGTTCCTACATGATGAGAAAGTCTGATTATCTGAGGATGACACTGC
* ** * *
415158 TCCTACGTGTTGAGGAGATATGGTCGGTATACGACATTGTTCCTACGTGATGAGGATGTCTAGCT
66 TCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGATGTATAGCC
415223 ATCTTTAGG
131 ATCTTTAGG
* * * * * * * **
415232 GATGATTTGTAGACAACAC-GATTCTTATATGAAGAGGAAGTCTGGTTATCTGAGAATGATGCTG
1 GATGATTTGGAGACAACACAG-TTCCTACATGATGAGAAAGTCTGATTATCTGAGGATGACACTG
415296 CTCCTACGTGTTGAGGAGATCT
65 CTCCTACGTGTTGAGGAGATCT
415318 AGTCATAGTT
Statistics
Matches: 443, Mismatches: 55, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
138 3 0.01
139 433 0.98
140 7 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (139 bp):
GATGATTTGGAGACAACACAGTTCCTACATGATGAGAAAGTCTGATTATCTGAGGATGACACTGC
TCCTACGTGTTGAGGAGATCTGGTCGGTGGACGACATTGTTCCTACGTGATGAGGATGTATAGCC
ATCTTTAGG
Found at i:416316 original size:8 final size:8
Alignment explanation
Indices: 416305--416368 Score: 56
Period size: 8 Copynumber: 7.2 Consensus size: 8
416295 CATTTATTTA
416305 TTTTTTTC
1 TTTTTTTC
416313 TTTTTTTTC
1 -TTTTTTTC
*
416322 TTTTATTC
1 TTTTTTTC
*
416330 TTTTTTCTTT
1 -TTTTT-TTC
416340 TATTTTTCTC
1 T-TTTTT-TC
416350 ATTTTTTTC
1 -TTTTTTTC
416359 TTTTTTTC
1 TTTTTTTC
416367 TT
1 TT
416369 CAAGTGTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 17 0.37
9 16 0.35
10 12 0.26
11 1 0.02
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTC
Found at i:416319 original size:9 final size:9
Alignment explanation
Indices: 416305--416365 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
416295 CATTTATTTA
416305 TTTTTTTCT
1 TTTTTTTCT
416314 TTTTTTTC-
1 TTTTTTTCT
*
416322 TTTTATTCT
1 TTTTTTTCT
416331 TTTTTCTT-T
1 TTTTT-TTCT
*
416340 TATTTTTCTCA
1 T-TTTTT-TCT
416351 TTTTTTTCT
1 TTTTTTTCT
416360 TTTTTT
1 TTTTTT
416366 CTTCAAGTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 7 0.16
9 23 0.53
10 12 0.28
11 1 0.02
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:416333 original size:15 final size:15
Alignment explanation
Indices: 416315--416364 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
416305 TTTTTTTCTT
416315 TTTTTTCTTTTATTC
1 TTTTTTCTTTTATTC
416330 TTTTTTCTTTTA-T-
1 TTTTTTCTTTTATTC
* *
416343 TTTTCTCATTTTTTTC
1 TTTTTTC-TTTTATTC
416359 TTTTTT
1 TTTTTT
416365 TCTTCAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 6 0.21
14 5 0.17
15 13 0.45
16 5 0.17
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTCTTTTATTC
Found at i:416347 original size:11 final size:10
Alignment explanation
Indices: 416305--416365 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
416295 CATTTATTTA
*
416305 TTTTTTTCTTT
1 TTTTTTT-TTC
*
416316 TTTTTCTTTTA
1 TTTTT-TTTTC
*
416327 TTCTTTTTTC
1 TTTTTTTTTC
416337 TTTTATTTTTC
1 TTTT-TTTTTC
*
416348 TCATTTTTTTC
1 T-TTTTTTTTC
416359 TTTTTTT
1 TTTTTTT
416366 CTTCAAGTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 12 0.29
11 25 0.61
12 4 0.10
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:427611 original size:13 final size:13
Alignment explanation
Indices: 427593--427619 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
427583 TTTGATTAAG
427593 TGGTGCTTTCCAC
1 TGGTGCTTTCCAC
427606 TGGTGCTTTCCAC
1 TGGTGCTTTCCAC
427619 T
1 T
427620 CCCGTTCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.30, G:0.22, T:0.41
Consensus pattern (13 bp):
TGGTGCTTTCCAC
Found at i:433870 original size:52 final size:53
Alignment explanation
Indices: 433765--433871 Score: 153
Period size: 52 Copynumber: 2.0 Consensus size: 53
433755 TTTTATTTGT
* * * *
433765 ATTTTTATATTTTTGTTATAGTTTAAATTGATATAATTCATATATAAGAGTAA
1 ATTTTTATATATTTATTATAGTTTAAATTGATATAATTCATATACAACAGTAA
* *
433818 ATTTTT-TATATTTATTATAGTTTAAATTGATATGATTCATATACAACTGTAA
1 ATTTTTATATATTTATTATAGTTTAAATTGATATAATTCATATACAACAGTAA
433870 AT
1 AT
433872 ATAATTTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
52 42 0.88
53 6 0.12
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.50
Consensus pattern (53 bp):
ATTTTTATATATTTATTATAGTTTAAATTGATATAATTCATATACAACAGTAA
Found at i:433886 original size:52 final size:52
Alignment explanation
Indices: 433780--433897 Score: 132
Period size: 52 Copynumber: 2.3 Consensus size: 52
433770 TATATTTTTG
* * * *
433780 TTATAGTTTAAATTGATATAATTCATATATAAGAGTAAATTTTTTATATTTA
1 TTATAGTTTAAATTGATATAATTCATATACAACAGTAAATTATTTATATATA
* *
433832 TTATAGTTTAAATTGATATGATTCATATACAACTGTAAATATAATTTA-A-ATA
1 TTATAGTTTAAATTGATATAATTCATATACAACAGTAAAT-T-ATTTATATATA
* *
433884 TTATATTTTTAATT
1 TTATAGTTTAAATT
433898 TACAACATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 50 0.89
53 2 0.04
54 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (52 bp):
TTATAGTTTAAATTGATATAATTCATATACAACAGTAAATTATTTATATATA
Found at i:434527 original size:15 final size:17
Alignment explanation
Indices: 434502--434533 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
434492 TATAATGTAC
434502 TTTATTTTTAA-ATTTT
1 TTTATTTTTAATATTTT
434518 TTTA-TTTTAATATTTT
1 TTTATTTTTAATATTTT
434534 GTCAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTATTTTTAATATTTT
Found at i:436342 original size:41 final size:39
Alignment explanation
Indices: 436277--436408 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 39
436267 ATTTTAACAT
* * *
436277 TGTTTTTAAATAAACGCCGATAAATATTTATACTTTAGTAG
1 TGTTTTTATATAAAAGCCGTTAAATATTTAT--TTTAGTAG
*
436318 TGTTTTTATATAAAAGTCGTTAAATATTGTATTTTAGTAG
1 TGTTTTTATATAAAAGCCGTTAAATATT-TATTTTAGTAG
* ** * * *
436358 CGTAGTTGTATAAATGCCGTTAAATATTTATTTTAAT-G
1 TGTTTTTATATAAAAGCCGTTAAATATTTATTTTAGTAG
436396 ATGTTTTTATATA
1 -TGTTTTTATATA
436409 CGCCGTCAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
38 1 0.01
39 16 0.22
40 30 0.41
41 24 0.32
42 3 0.04
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (39 bp):
TGTTTTTATATAAAAGCCGTTAAATATTTATTTTAGTAG
Found at i:436560 original size:41 final size:41
Alignment explanation
Indices: 436408--436580 Score: 138
Period size: 41 Copynumber: 4.3 Consensus size: 41
436398 GTTTTTATAT
*
436408 ACGCCGTCAAAGACTCGTACTTTACTA---TTTTTATACAA
1 ACGCCGTCAAAGACTCGTACTTTAGTAGTGTTTTTATACAA
* * * * * *
436446 ACGCTGCCAAAAACTCGTATTTTAGT-GTCATTTTAAGTACAA
1 ACGCCGTCAAAGACTCGTACTTTAGTAGT-GTTTTTA-TACAA
** * * * * * *
436488 ACATCGTTAAATACTCATATTTTAGTGGTGTTTTTATATAA
1 ACGCCGTCAAAGACTCGTACTTTAGTAGTGTTTTTATACAA
* *
436529 ACGCCGTCAAAGACACGTACTTTAGTAGTGTTTGTATACAA
1 ACGCCGTCAAAGACTCGTACTTTAGTAGTGTTTTTATACAA
*
436570 ACGCCGCCAAA
1 ACGCCGTCAAA
436581 ATTAAAACTC
Statistics
Matches: 102, Mismatches: 27, Indels: 9
0.74 0.20 0.07
Matches are distributed among these distances:
38 21 0.21
41 50 0.49
42 29 0.28
43 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (41 bp):
ACGCCGTCAAAGACTCGTACTTTAGTAGTGTTTTTATACAA
Found at i:436925 original size:15 final size:15
Alignment explanation
Indices: 436907--437078 Score: 101
Period size: 15 Copynumber: 11.3 Consensus size: 15
436897 GAAAAAGCAG
*
436907 AAGAGGAGGAAAAGA
1 AAGAAGAGGAAAAGA
*
436922 AAGAAGAAGTAAAAGCA
1 AAGAAG-AGGAAAAG-A
436939 GAAGAAGAGGAAAAGA
1 -AAGAAGAGGAAAAGA
*
436955 AAG-A-AGTAAAAGCA
1 AAGAAGAGGAAAAG-A
*
436969 GAAGAAGAGGATAAGA
1 -AAGAAGAGGAAAAGA
*
436985 AAG-A-AGTAAAAGCAA
1 AAGAAGAGGAAAAG--A
437000 AAGAAGAGGAAAAGA
1 AAGAAGAGGAAAAGA
*
437015 AAGAAGA--AAAACCA
1 AAGAAGAGGAAAA-GA
* *
437029 GAAGAAGAGGTAAATA
1 -AAGAAGAGGAAAAGA
437045 AAGAAGA--AAAAGCA
1 AAGAAGAGGAAAAG-A
*
437059 GAAGAAGTGGAAAA-A
1 -AAGAAGAGGAAAAGA
437074 AAGAA
1 AAGAA
437079 TAAAAAGAAG
Statistics
Matches: 123, Mismatches: 15, Indels: 39
0.69 0.08 0.22
Matches are distributed among these distances:
13 20 0.16
14 10 0.08
15 47 0.38
16 12 0.10
17 28 0.23
18 6 0.05
ACGTcount: A:0.64, C:0.03, G:0.28, T:0.04
Consensus pattern (15 bp):
AAGAAGAGGAAAAGA
Found at i:436927 original size:30 final size:30
Alignment explanation
Indices: 436891--437085 Score: 266
Period size: 30 Copynumber: 6.4 Consensus size: 30
436881 TCCGAATGCT
*
436891 AAAGAAGAAAAAGCAGAAGAGGAGGAAAAG
1 AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
436921 AAAGAAGAAGTAAAAGCAGAAGAAGAGGAAAAG
1 AAAGAAG-A--AAAAGCAGAAGAAGAGGAAAAG
* *
436954 AAAGAAGTAAAAGCAGAAGAAGAGGATAAG
1 AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
* *
436984 AAAGAAGTAAAAGCAAAAGAAGAGGAAAAG
1 AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
* * *
437014 AAAGAAGAAAAACCAGAAGAAGAGGTAAAT
1 AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
*
437044 AAAGAAGAAAAAGCAGAAGAAGTGGAAAA-
1 AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
*
437073 AAAGAATAAAAAG
1 AAAGAAGAAAAAG
437086 AAGCCTATGA
Statistics
Matches: 148, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
29 12 0.08
30 107 0.72
31 1 0.01
33 28 0.19
ACGTcount: A:0.65, C:0.04, G:0.28, T:0.04
Consensus pattern (30 bp):
AAAGAAGAAAAAGCAGAAGAAGAGGAAAAG
Found at i:437006 original size:18 final size:16
Alignment explanation
Indices: 436913--437022 Score: 67
Period size: 17 Copynumber: 7.1 Consensus size: 16
436903 GCAGAAGAGG
436913 AGGAAAAGAAAGAAGA
1 AGGAAAAGAAAGAAGA
*
436929 AGTAAAAGCAGAAGAAG-
1 AGGAAAAG-A-AAGAAGA
436946 AGGAAAAG--A-AAGA
1 AGGAAAAGAAAGAAGA
*
436959 AGTAAAAGCAGAAGAAG-
1 AGGAAAAG-A-AAGAAGA
*
436976 AGGATAAG--A-AAGA
1 AGGAAAAGAAAGAAGA
*
436989 AGTAAAAGCAAAAGAAG-
1 AGGAAAAG--AAAGAAGA
437006 AGGAAAAGAAAGAAGA
1 AGGAAAAGAAAGAAGA
437022 A
1 A
437023 AAACCAGAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 30
0.65 0.07 0.28
Matches are distributed among these distances:
12 6 0.08
13 15 0.21
15 7 0.10
16 8 0.11
17 23 0.32
18 12 0.17
ACGTcount: A:0.65, C:0.03, G:0.29, T:0.04
Consensus pattern (16 bp):
AGGAAAAGAAAGAAGA
Found at i:442968 original size:20 final size:20
Alignment explanation
Indices: 442943--442982 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
442933 CAATAGGATT
*
442943 AGGATTAGGAATTGGATTTG
1 AGGATTAGGAAGTGGATTTG
* *
442963 AGGATTTGGAGGTGGATTTG
1 AGGATTAGGAAGTGGATTTG
442983 GTTGACGGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (20 bp):
AGGATTAGGAAGTGGATTTG
Found at i:455128 original size:32 final size:32
Alignment explanation
Indices: 455086--455149 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
455076 GCTAAACGAA
455086 CCAAACACAAAATACAACATTCTCAGTAATCT
1 CCAAACACAAAATACAACATTCTCAGTAATCT
*
455118 CCAAATACAAAATACAACATTCTCAGTAATCT
1 CCAAACACAAAATACAACATTCTCAGTAATCT
455150 TATTCCCACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.23
Consensus pattern (32 bp):
CCAAACACAAAATACAACATTCTCAGTAATCT
Found at i:455166 original size:18 final size:18
Alignment explanation
Indices: 455143--455188 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
455133 AACATTCTCA
455143 GTAATCTTATTCCCACCG
1 GTAATCTTATTCCCACCG
* *
455161 GTAATCCTATTCCCACTG
1 GTAATCTTATTCCCACCG
*
455179 GTATTCTTAT
1 GTAATCTTAT
455189 ATTCCGTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (18 bp):
GTAATCTTATTCCCACCG
Found at i:456156 original size:108 final size:108
Alignment explanation
Indices: 455934--456130 Score: 313
Period size: 108 Copynumber: 1.8 Consensus size: 108
455924 CCACGCAGTA
* * *
455934 CACTCAATGCTCCGAAAAATAGAATCAATGAGGGGGAAATTGTGGGATTGGCATCTATTTTGTGA
1 CACTCATTGCTCCGAAAAATAGAATCAATGAGGGGGAAACTGTGGGATTGGCAACTATTTTGTGA
*
455999 AGGGATTTCGGATTTGAATATTGTACAGAAAATTTAATTAGTG
66 AGGGATTTCGAATTTGAATATTGTACAGAAAATTTAATTAGTG
* * *
456042 CACTCATTGCTCCGGAAAATAGAATCGATGAGGGGGAAACTGTGGGATTGGCAACTATTTTGTGG
1 CACTCATTGCTCCGAAAAATAGAATCAATGAGGGGGAAACTGTGGGATTGGCAACTATTTTGTGA
* *
456107 AGGGTTTTCGAATTTGAGTATTGT
66 AGGGATTTCGAATTTGAATATTGT
456131 TATACTTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.31
Consensus pattern (108 bp):
CACTCATTGCTCCGAAAAATAGAATCAATGAGGGGGAAACTGTGGGATTGGCAACTATTTTGTGA
AGGGATTTCGAATTTGAATATTGTACAGAAAATTTAATTAGTG
Found at i:456559 original size:44 final size:44
Alignment explanation
Indices: 456511--456594 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
456501 TAATTCACAA
* *
456511 ACACCACTATATGACATAATATTTAGCGACGTTTTTGGGAACAG
1 ACACCACTATATGACAGAACATTTAGCGACGTTTTTGGGAACAG
* **
456555 ACACCACTATATGTCAGAACATTTAGCGGTGTTTTTGGGA
1 ACACCACTATATGACAGAACATTTAGCGACGTTTTTGGGA
456595 TAAAACGCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
ACACCACTATATGACAGAACATTTAGCGACGTTTTTGGGAACAG
Found at i:460114 original size:79 final size:79
Alignment explanation
Indices: 460020--460218 Score: 321
Period size: 79 Copynumber: 2.5 Consensus size: 79
460010 AAGAAAGATG
* * * *
460020 AGGAAGAGTAGAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATGGATGTCACGAAA-CTGAAGTGA
1 AGGAAGAGTAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATAGATGCCACGAAATC-CAAGTGA
*
460084 ACAACCTCTATTTTC
65 ACAACATCTATTTTC
460099 AGGAAGAGTAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATAGATGCCACGAAATCCAAGTGAA
1 AGGAAGAGTAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATAGATGCCACGAAATCCAAGTGAA
460164 CAACATCTATTTTC
66 CAACATCTATTTTC
*
460178 GGGAAGAG-AAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGAT
1 AGGAAGAGTAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGAT
460219 TTGAACAACA
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
78 33 0.29
79 79 0.70
80 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.30, T:0.17
Consensus pattern (79 bp):
AGGAAGAGTAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATAGATGCCACGAAATCCAAGTGAA
CAACATCTATTTTC
Found at i:460277 original size:61 final size:60
Alignment explanation
Indices: 460160--460279 Score: 170
Period size: 61 Copynumber: 2.0 Consensus size: 60
460150 GAAATCCAAG
* * *
460160 TGAACAACATCTATTTTCGGGAAGAGAAAAGTGTGGGAAGAGAAAGAAAAGTAGAAGATT
1 TGAACAACAACTATTTTCAGGAAGAGAAAAGTGTGGGAAGAGAAAGAAAAGAAGAAGATT
* *
460220 TGAACAACAACTATTTTCAGGAAGAGTAGAAGTGTGGGAAGATAAAGAATAA-AAGAAGAT
1 TGAACAACAACTATTTTCAGGAAGAG-AAAAGTGTGGGAAGAGAAAGAA-AAGAAGAAGAT
460280 AGATATCACG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
60 24 0.45
61 27 0.51
62 2 0.04
ACGTcount: A:0.47, C:0.07, G:0.27, T:0.20
Consensus pattern (60 bp):
TGAACAACAACTATTTTCAGGAAGAGAAAAGTGTGGGAAGAGAAAGAAAAGAAGAAGATT
Found at i:462279 original size:18 final size:18
Alignment explanation
Indices: 462256--462298 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
462246 TTGGTTTTTA
462256 TTCTCTTTCTCTTTCTTT
1 TTCTCTTTCTCTTTCTTT
* *
462274 TTCTCTTTTTCTTTTTTT
1 TTCTCTTTCTCTTTCTTT
*
462292 TTTTCTT
1 TTCTCTT
462299 CATTTCTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTCTCTTTCTCTTTCTTT
Found at i:462284 original size:20 final size:20
Alignment explanation
Indices: 462261--462335 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
462251 TTTTATTCTC
462261 TTTCTCTTTCTTTTTCTCTT-
1 TTTCTCTTTCTTTTT-TCTTA
*
462281 TTTCT-TTTTTTTTTTCTTCA
1 TTTCTCTTTCTTTTTTCTT-A
** *
462301 TTTCTCTTGGTTTTTTTTTA
1 TTTCTCTTTCTTTTTTCTTA
*
462321 TTTCTTTTTCTTTTT
1 TTTCTCTTTCTTTTT
462336 AACTGTGGTC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
18 4 0.09
19 8 0.18
20 23 0.51
21 10 0.22
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTCTCTTTCTTTTTTCTTA
Found at i:462330 original size:26 final size:26
Alignment explanation
Indices: 462267--462331 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 26
462257 TCTCTTTCTC
* *
462267 TTTCTTTTTCTCTTTTTCTTTTTTTT
1 TTTCTTTTTCTCTTGTTCTTTTTTTA
462293 TTTCTTCATTTCTCTTGGTT-TTTTTTTA
1 TTTCTT--TTTCTCTT-GTTCTTTTTTTA
462321 TTTCTTTTTCT
1 TTTCTTTTTCT
462332 TTTTAACTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 11 0.32
28 21 0.62
29 2 0.06
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.78
Consensus pattern (26 bp):
TTTCTTTTTCTCTTGTTCTTTTTTTA
Found at i:463009 original size:17 final size:16
Alignment explanation
Indices: 462989--463046 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 16
462979 ATCTTGAACC
462989 CCTTTTTATTTTATTTT
1 CCTTTTT-TTTTATTTT
463006 CCTTTTCTTTTTATTTTTT
1 CCTTTT-TTTTTA--TTTT
*
463025 CC-TTTTTTTTCTTTT
1 CCTTTTTTTTTATTTT
463040 CCTTTTT
1 CCTTTTT
463047 CTTGTTCCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 6 0.17
16 4 0.11
17 16 0.44
18 4 0.11
19 6 0.17
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
CCTTTTTTTTTATTTT
Found at i:463034 original size:29 final size:27
Alignment explanation
Indices: 462997--463071 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 27
462987 CCCCTTTTTA
* *
462997 TTTTATTTTCCTTTTCTTTTTATTTTTTCC
1 TTTT-TTTT-CTTTTCTTTTT-CTTGTTCC
463027 TTTTTTTTCTTTTCCTTTTTCTTGTTCC
1 TTTTTTTTCTTTT-CTTTTTCTTGTTCC
*
463055 TTTTTTTTCTCTTCTTT
1 TTTTTTTTCTTTTCTTT
463072 AATCATAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.10
28 23 0.56
29 10 0.24
30 4 0.10
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (27 bp):
TTTTTTTTCTTTTCTTTTTCTTGTTCC
Found at i:463058 original size:12 final size:12
Alignment explanation
Indices: 463030--463059 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
463020 TTTTTCCTTT
463030 TTTTTCTTTTCC
1 TTTTTCTTTTCC
463042 TTTTTCTTGTTCC
1 TTTTTCTT-TTCC
463055 TTTTT
1 TTTTT
463060 TTTCTCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (12 bp):
TTTTTCTTTTCC
Found at i:482089 original size:11 final size:11
Alignment explanation
Indices: 482066--482105 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
482056 TAATCAATAT
482066 TTTTTCTTT-A
1 TTTTTCTTTCA
482076 TTTTT-TTGTCA
1 TTTTTCTT-TCA
482087 TTTTTCTTTCA
1 TTTTTCTTTCA
482098 -TTTTCTTT
1 TTTTTCTTT
482106 TAACTTGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 2 0.07
10 14 0.52
11 9 0.33
12 2 0.07
ACGTcount: A:0.07, C:0.12, G:0.03, T:0.78
Consensus pattern (11 bp):
TTTTTCTTTCA
Found at i:491483 original size:131 final size:131
Alignment explanation
Indices: 491149--491489 Score: 377
Period size: 131 Copynumber: 2.6 Consensus size: 131
491139 GATATGGCTC
* * * * * * *
491149 CTACGTGATGAGGAGATCTGGTCGGTGGATTACACGATT-CTCAGGAGATGAGGATAGCTGGTCA
1 CTACGTGATGAGGAGGTCTGGTCGGTGGATGACACGGTTCCT-ACGTGATGAGGATAGTTGGCCA
* * *
491213 TCTTTAGGGAATGGTGATAACACGGTTCTCACGCGATGAGGATGGCTGGTTATCTAGGTGTGTAA
65 TCTTTAGGG-A---TGATAACACGGTTCTCACACGATAAGGATGGATGGTTATCTAGGTGTGTAA
491278 CGACTT
126 CGACTT
* * * * *
491284 CTACGTGATGAGGAGGTCTGGACGGTGGATGACATGGTTCTTACGTGATGAGGATAATAT-ACCA
1 CTACGTGATGAGGAGGTCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATAGT-TGGCCA
* *
491348 TCTTTAGGGATGATAACACGGTTCTTACATGATAAGGATGGATGGTTATCTGAGGT-TG-ACACG
65 TCTTTAGGGATGATAACACGGTTCTCACACGATAAGGATGGATGGTTATCT-AGGTGTGTA-ACG
491411 AC-T
128 ACTT
* ** *
491414 CTTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGACGGTTGGCCG
1 C-TACGTGATGAGGAGGTCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATAGTTGGCCA
491479 TCTTTAGGGAT
65 TCTTTAGGGAT
491490 AATGGGTTCA
Statistics
Matches: 174, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
130 4 0.02
131 106 0.61
132 4 0.02
134 1 0.01
135 57 0.33
136 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.28
Consensus pattern (131 bp):
CTACGTGATGAGGAGGTCTGGTCGGTGGATGACACGGTTCCTACGTGATGAGGATAGTTGGCCAT
CTTTAGGGATGATAACACGGTTCTCACACGATAAGGATGGATGGTTATCTAGGTGTGTAACGACT
T
Found at i:491643 original size:66 final size:66
Alignment explanation
Indices: 491496--491925 Score: 426
Period size: 66 Copynumber: 6.6 Consensus size: 66
491486 GGATAATGGG
* * * * * *
491496 TTCAACAGAAATTGTCTCAAGAGAGACAAAATTCGTTTCAAGGAAAACGATCTCAAAGA-TGGTG
1 TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGTG
491560 T
66 T
* *
491561 TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACCACCTCAAAGATTGGTG
1 TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGTG
491626 T
66 T
* * * * * **
491627 TTTAAGAGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGGAAAACAATCTCAAAGGCTGGTG
1 TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGTG
491692 T
66 T
* * * ** * *
491693 TTCACGAGAAACTGTCTCAAGGGAGAACAAATTCATTTCAAAGGAAACGATCTCAAAGATTGGTG
1 TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGTG
491758 T
66 T
* * * * ** *
491759 TTAAAGAGAAACTGTCTCAA-AGGAGACAAAACTTGTTTCAAGTGAAACAATCTCAAATTTTTGT
1 TTCAAGAGAAACTGTCTCAAGA-GAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGT
491823 GT
65 GT
* * * * * * * *
491825 TTCAAGGGGATCTGTCTCAAGGGA-AACAAAACTTGTTTCAAGAGAGATAATCTCAAAG-TT--T
1 TTCAAGAGAAACTGTCTCAAGAGAGAA-AAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGT
491886 GT
65 GT
*
491888 CTT-AAG-GAAGACTGTCTCAAGTGAGAAAAAATTTGTTT
1 -TTCAAGAGAA-ACTGTCTCAAGAGAGAAAAAATTTGTTT
491926 TGAGAAAAAA
Statistics
Matches: 300, Mismatches: 58, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
62 2 0.01
63 28 0.09
64 4 0.01
65 55 0.18
66 211 0.70
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.27
Consensus pattern (66 bp):
TTCAAGAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTGGTG
T
Found at i:491825 original size:132 final size:131
Alignment explanation
Indices: 491502--491854 Score: 471
Period size: 132 Copynumber: 2.7 Consensus size: 131
491492 TGGGTTCAAC
*
491502 AGAAATTGTCTCAAGAGAGACAAAA-TTCGTTTCAAGGAAAACGATCTCAAAGATGGTGTTTCAA
1 AGAAATTGTCTCAAGAGAGACAAAACTT-GTTTCAAGGAAAACAATCTCAAAGATGGTGTTTCAA
* * ** * *
491566 GAGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACCACCTCAAAGATTGGTGTTTTA
65 GAGAAACTGTCTCAAGGGAGAACAAATTCATTTCAAAGGAAACCACCTCAAAGATTGGTGTTTAA
491631 AG
130 AG
* *
491633 AGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGGAAAACAATCTCAAAGGCTGGTGTTTCAC
1 AGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGGAAAACAATCTCAAA-GATGGTGTTTCAA
* *
491698 GAGAAACTGTCTCAAGGGAGAACAAATTCATTTCAAAGGAAACGATCTCAAAGATTGGTGTTTAA
65 GAGAAACTGTCTCAAGGGAGAACAAATTCATTTCAAAGGAAACCACCTCAAAGATTGGTGTTTAA
491763 AG
130 AG
* ** *
491765 AGAAACTGTCTCAA-AGGAGACAAAACTTGTTTCAAGTG-AAACAATCTCAAATTTTTGTGTTTC
1 AGAAATTGTCTCAAGA-GAGACAAAACTTGTTTCAAG-GAAAACAATCTCAAA-GATGGTGTTTC
* * *
491828 AAGGGGATCTGTCTCAAGGGA-AACAAA
63 AAGAGAAACTGTCTCAAGGGAGAACAAA
491855 ACTTGTTTCA
Statistics
Matches: 198, Mismatches: 20, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
131 54 0.27
132 143 0.72
133 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (131 bp):
AGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGGAAAACAATCTCAAAGATGGTGTTTCAAG
AGAAACTGTCTCAAGGGAGAACAAATTCATTTCAAAGGAAACCACCTCAAAGATTGGTGTTTAAA
G
Found at i:491882 original size:198 final size:197
Alignment explanation
Indices: 491502--491866 Score: 504
Period size: 198 Copynumber: 1.8 Consensus size: 197
491492 TGGGTTCAAC
* * *
491502 AGAAATTGTCTCAAGAGAGACAAAATTCGTTTCAAGGAAAACGATCTCAAAGATGGTGTTTCAAG
1 AGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGAAAACGATCTCAAAGATGGTGTTTAAAG
* * *
491567 AGAAACTGTCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACCACCTCAAAGATTGGTGTTTTAA
66 AGAAACTGTCTCAAGAGAGAAAAAACTTGTTTCAAGGGAAACAACCTCAAAGATTGGTGTTTCAA
*
491632 GAGAAATTGTCTCAAGAGAGACAAAACTTGTTTCAAGGAAAACAATCTCAAAGGCTGGTGTTTCA
131 GAGAAATTGTCTCAAGAGAAACAAAACTTGTTTCAAGGAAAACAATCTCAAAGGCTGGTGTTTCA
491697 CG
196 CG
*
491699 AGAAACTGTCTCAAGGGAGA-ACAAATTCATTTCAAAGG-AAACGATCTCAAAGATTGGTGTTTA
1 AGAAACTGTCTCAAGAGAGACA-AAATTCATTTC-AAGGAAAACGATCTCAAAGA-TGGTGTTTA
* * * ** *
491762 AAGAGAAACTGTCTCAA-AGGAGACAAAACTTGTTTCAAGTGAAACAATCTCAAATTTTTGTGTT
63 AAGAGAAACTGTCTCAAGA-GAGAAAAAACTTGTTTCAAGGGAAACAACCTCAAAGATTGGTGTT
** *
491826 TCAAG-GGGATCTGTCTCAAGGGAAACAAAACTTGTTTCAAG
127 TCAAGAGAAAT-TGTCTCAAGAGAAACAAAACTTGTTTCAAG
491867 AGAGATAATC
Statistics
Matches: 146, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
196 1 0.01
197 47 0.32
198 98 0.67
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (197 bp):
AGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGAAAACGATCTCAAAGATGGTGTTTAAAG
AGAAACTGTCTCAAGAGAGAAAAAACTTGTTTCAAGGGAAACAACCTCAAAGATTGGTGTTTCAA
GAGAAATTGTCTCAAGAGAAACAAAACTTGTTTCAAGGAAAACAATCTCAAAGGCTGGTGTTTCA
CG
Found at i:492044 original size:35 final size:34
Alignment explanation
Indices: 491998--492108 Score: 123
Period size: 35 Copynumber: 3.1 Consensus size: 34
491988 TATCTCCAAG
* * *
491998 GAAAAATGTCTCAAGCAAGACCAAATTTTTTTGA
1 GAAAACTGTCTCAAGCGAGACAAAATTTTTTTGA
* *
492032 GAGAAATTGTCTCAAGCGAGACAAAATTTGTTTTTA
1 GA-AAACTGTCTCAAGCGAGACAAAATTT-TTTTGA
* *
492068 TAAAACGGTCTCAAGCGAGACAAAATTTTGTTTCGA
1 GAAAACTGTCTCAAGCGAGACAAAATTTT-TTT-GA
492104 GAAAA
1 GAAAA
492109 ACACCCTCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
34 3 0.05
35 50 0.78
36 11 0.17
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (34 bp):
GAAAACTGTCTCAAGCGAGACAAAATTTTTTTGA
Found at i:499337 original size:21 final size:22
Alignment explanation
Indices: 499300--499347 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
499290 TACAAAAATG
499300 TAATAGAAATTTGTATTAGTA-
1 TAATAGAAATTTGTATTAGTAT
* *
499321 TAATAGTAATTAT-TATTATTAT
1 TAATAGAAATT-TGTATTAGTAT
499343 TAATA
1 TAATA
499348 TTTTTAAGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (22 bp):
TAATAGAAATTTGTATTAGTAT
Found at i:502111 original size:15 final size:15
Alignment explanation
Indices: 502093--502178 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 15
502083 GACCGCAATT
502093 AAAAAGAAAAAAAGA
1 AAAAAGAAAAAAAGA
**
502108 AAAAGAGAAAAAAACC
1 AAAA-AGAAAAAAAGA
* * **
502124 CAAGAGAAATGAAGA
1 AAAAAGAAAAAAAGA
502139 AAAAAGAAAAGTGAAAGA
1 AAAAAGAAAA---AAAGA
*
502157 GAAAAAGAAATATAAGA
1 -AAAAAGAAA-AAAAGA
502174 AAAAA
1 AAAAA
502179 TAAAGTGAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 11
0.68 0.17 0.14
Matches are distributed among these distances:
15 18 0.35
16 16 0.31
17 4 0.08
18 4 0.08
19 9 0.17
20 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.17, T:0.05
Consensus pattern (15 bp):
AAAAAGAAAAAAAGA
Found at i:503010 original size:43 final size:43
Alignment explanation
Indices: 502924--503039 Score: 110
Period size: 43 Copynumber: 2.7 Consensus size: 43
502914 TTTCATGTTG
* *
502924 CTTGATCCTTCGCATAATGAGTTGAATCAGTAACAACCTTTCA
1 CTTGATCCTTCGCAGAATGAGTTGAATCAGTAACAACCATTCA
* * *
502967 CTTGATCCTTCGTAGAA-GAAGTTGGATCAGTGAA-AATCATTCA
1 CTTGATCCTTCGCAGAATG-AGTTGAATCAGT-AACAACCATTCA
* * * * *
503010 CTTGGTTCTTCACAGAAGGAGTAGAATCAG
1 CTTGATCCTTCGCAGAATGAGTTGAATCAG
503040 CCTCAATCTG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 1 0.02
43 55 0.93
44 3 0.05
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
CTTGATCCTTCGCAGAATGAGTTGAATCAGTAACAACCATTCA
Found at i:504017 original size:21 final size:21
Alignment explanation
Indices: 503979--504018 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
503969 TATACATTTT
*
503979 ATAAATATATACAAATAAATA
1 ATAAATAAATACAAATAAATA
504000 ATAAATAAATA-AACATAAA
1 ATAAATAAATACAA-ATAAA
504019 AAATGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
ATAAATAAATACAAATAAATA
Found at i:506796 original size:24 final size:24
Alignment explanation
Indices: 506769--506830 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
506759 CATTCGTGAA
*
506769 CGTTCGGTTATGTTCGTTTATATG
1 CGTTCAGTTATGTTCGTTTATATG
* *
506793 CGTTTAGTTATGTTCGTTTATGTG
1 CGTTCAGTTATGTTCGTTTATATG
*
506817 CGTTCATTTATGTT
1 CGTTCAGTTATGTT
506831 TAACCTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.13, C:0.11, G:0.23, T:0.53
Consensus pattern (24 bp):
CGTTCAGTTATGTTCGTTTATATG
Found at i:510562 original size:18 final size:18
Alignment explanation
Indices: 510539--510595 Score: 114
Period size: 18 Copynumber: 3.2 Consensus size: 18
510529 TCAGTCAATT
510539 TGGTAAAGGTATTAAAAC
1 TGGTAAAGGTATTAAAAC
510557 TGGTAAAGGTATTAAAAC
1 TGGTAAAGGTATTAAAAC
510575 TGGTAAAGGTATTAAAAC
1 TGGTAAAGGTATTAAAAC
510593 TGG
1 TGG
510596 CACAGCTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (18 bp):
TGGTAAAGGTATTAAAAC
Found at i:511529 original size:16 final size:16
Alignment explanation
Indices: 511483--511537 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
511473 GGGTCTCCAA
*
511483 CGTTTATGTTCATGTT
1 CGTTTATGTTCGTGTT
*
511499 CATTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
*
511515 CGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
511531 CGTTTAT
1 CGTTTAT
511538 TTATTAAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.11, C:0.11, G:0.20, T:0.58
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:511624 original size:16 final size:16
Alignment explanation
Indices: 511603--511634 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
511593 AAAAAGATTT
511603 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
511619 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
511635 CTTATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:520923 original size:16 final size:16
Alignment explanation
Indices: 520904--520934 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
520894 AAAATTGAAA
*
520904 TAGTTCTAAATATTTG
1 TAGTTATAAATATTTG
520920 TAGTTATAAATATTT
1 TAGTTATAAATATTT
520935 TTTATTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (16 bp):
TAGTTATAAATATTTG
Found at i:522153 original size:262 final size:262
Alignment explanation
Indices: 521688--522213 Score: 1025
Period size: 262 Copynumber: 2.0 Consensus size: 262
521678 GATAGTTTTC
521688 TCACGTCGCTTGACTTTGATTTACGATTTGTCGGTAGTCTTTCAATAGCTTCACCTCCTTTTATG
1 TCACGTCGCTTGACTTTGATTTACGATTTGTCGGTAGTCTTTCAATAGCTTCACCTCCTTTTATG
*
521753 GTTCGTTTACTGATACAAGCATATTTGTTTGTATCTTTATTTTGTTCGAGCATTTTGATTTTTTT
66 GTTCGTTTACTGATACAAGCATATTTGTTTGTATCTTTATTTTGTTCGAACATTTTGATTTTTTT
521818 TAACATTTACCTTCTTTGGTCATGTGATCTAGGTGACTAATTTTTGTTAATGGTTACAGAAAATG
131 TAACATTTACCTTCTTTGGTCATGTGATCTAGGTGACTAATTTTTGTTAATGGTTACAGAAAATG
521883 TTTTGATTATAATTTAGTTTACATTTACGGTTCTGCTTGTAAATCTTTATTGTAATTATAGATAT
196 TTTTGATTATAATTTAGTTTACATTTACGGTTCTGCTTGTAAATCTTTATTGTAATTATAGATAT
521948 TT
261 TT
*
521950 TCACGTCTCTTGACTTTGATTTACGATTTGTCGGTAGTCTTTCAATAGCTTCACCTCCTTTTATG
1 TCACGTCGCTTGACTTTGATTTACGATTTGTCGGTAGTCTTTCAATAGCTTCACCTCCTTTTATG
*
522015 GTTCGTTTACTGATACAAGCATATTTGTTTGTATCTTTATTTTGTTCGAACATTTTGGTTTTTTT
66 GTTCGTTTACTGATACAAGCATATTTGTTTGTATCTTTATTTTGTTCGAACATTTTGATTTTTTT
522080 TAACATTTACCTTCTTTGGTCATGTGATCTAGGTGACTAATTTTTGTTAATGGTTACAGAAAATG
131 TAACATTTACCTTCTTTGGTCATGTGATCTAGGTGACTAATTTTTGTTAATGGTTACAGAAAATG
522145 TTTTGATTATAATTTAGTTTACATTTACGGTTCTGCTTGTAAATCTTTATTGTAATTATAGATAT
196 TTTTGATTATAATTTAGTTTACATTTACGGTTCTGCTTGTAAATCTTTATTGTAATTATAGATAT
522210 TT
261 TT
522212 TC
1 TC
522214 GATTTTTAAC
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 261 1.00
ACGTcount: A:0.22, C:0.13, G:0.15, T:0.49
Consensus pattern (262 bp):
TCACGTCGCTTGACTTTGATTTACGATTTGTCGGTAGTCTTTCAATAGCTTCACCTCCTTTTATG
GTTCGTTTACTGATACAAGCATATTTGTTTGTATCTTTATTTTGTTCGAACATTTTGATTTTTTT
TAACATTTACCTTCTTTGGTCATGTGATCTAGGTGACTAATTTTTGTTAATGGTTACAGAAAATG
TTTTGATTATAATTTAGTTTACATTTACGGTTCTGCTTGTAAATCTTTATTGTAATTATAGATAT
TT
Found at i:526935 original size:31 final size:31
Alignment explanation
Indices: 526899--526958 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
526889 AACTTAAAAG
* *
526899 AGTTTTGCAATTA-TGATATTTAAATAATTTT
1 AGTTTTACAA-TACTGAAATTTAAATAATTTT
526930 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
526959 CATACAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:527507 original size:12 final size:13
Alignment explanation
Indices: 527474--527617 Score: 79
Period size: 12 Copynumber: 11.5 Consensus size: 13
527464 AATATATTTT
*
527474 TTAAAAATTAATA
1 TTAAAATTTAATA
* *
527487 TT-TAATTT-ATT
1 TTAAAATTTAATA
527498 TTAAAATTTAATA
1 TTAAAATTTAATA
527511 TTAAAA-TTAATA
1 TTAAAATTTAATA
* *
527523 TCTATAATATAATA
1 T-TAAAATTTAATA
*
527537 TTAAAAAATTAATA
1 TT-AAAATTTAATA
* *
527551 TT-TAATTTATTTA
1 TTAAAATTTA-ATA
**
527564 AAAAAATTTAATA
1 TTAAAATTTAATA
527577 TTAAAA-TTAA-A
1 TTAAAATTTAATA
* * *
527588 ATCAAATATAATA
1 TTAAAATTTAATA
*
527601 -TAAAATTAAATA
1 TTAAAATTTAATA
527613 -TAAAA
1 TTAAAA
527618 CATCTTTGAA
Statistics
Matches: 97, Mismatches: 25, Indels: 19
0.69 0.18 0.13
Matches are distributed among these distances:
11 9 0.09
12 42 0.43
13 24 0.25
14 22 0.23
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (13 bp):
TTAAAATTTAATA
Done.