Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008162.1 Hibiscus syriacus cultivar Beakdansim tig00110733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3688897
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 16
Found at i:193886 original size:231 final size:232
Alignment explanation
Indices: 193479--194109 Score: 1016
Period size: 231 Copynumber: 2.7 Consensus size: 232
193469 ATGTTTTCAA
* * * *
193479 AAAGCCTTCGGGTCATCTATAAGACCTATAGTGCAAGATGATAAGACCTCAGAGCCATCCATAAG
1 AAAGCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAG
* * *
193544 ACCTATAGTGCATGATGTT-TTTTAAAAAAAGCCTTCCGGAGCGTTTTGATATTTAAAGCCTTCG
66 ACCTATAGTGCA-G--GTTGTTTT-CAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTTCG
193608 GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTG
127 GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTG
193673 CAGGATGTTTTCAAAAAGCCTTCAGGAGATTTTTGATATTT
192 CAGGATGTTTTCAAAAAGCCTTCAGGAGATTTTTGATATTT
* * *
193714 AAAGCCTCCGGGTCATCTGTAAGGCCTACAGTGCAAG-TGATAAGACCTTAGGGACATCCATAAG
1 AAAGCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAG
* *
193778 ACCTATAATACAGGTTGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCC-TCTGGGT
66 ACCTATAGTGCAGGTTGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTTC-GGGT
*
193842 CATCTATAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTGCAG
130 CATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTGCAG
*
193907 GATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTT
195 GATGTTTTCAAAAAGCCTTCAGGAGATTTTTGATATTT
* *
193945 AAAGCCTCCGGGTCATCTGTAAGACCTACAGTTCAGGATGATAAGACCTCAGGGCCATCCATAAG
1 AAAGCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAG
* * *
194010 ACCTATAGTGCAGGATGTTTTCAAAAAGCATTCGGGAGCTATTTGATATTTAAAGCCTTCGGGTC
66 ACCTATAGTGCAGGTTGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTTCGGGTC
*
194075 ATCTGTAAGACCTATAGTGCAAGATGATAAGACCT
131 ATCTGTAAGACCTACAGTGCAAGATGATAAGACCT
194110 ACAGTGCATG
Statistics
Matches: 366, Mismatches: 26, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
230 2 0.01
231 175 0.48
232 119 0.33
233 3 0.01
234 34 0.09
235 33 0.09
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (232 bp):
AAAGCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAG
ACCTATAGTGCAGGTTGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTTCGGGTC
ATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTGCAGG
ATGTTTTCAAAAAGCCTTCAGGAGATTTTTGATATTT
Found at i:194108 original size:22 final size:22
Alignment explanation
Indices: 194080--194122 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
194070 GGGTCATCTG
*
194080 TAAGACCTATAGTGCAAGATGA
1 TAAGACCTACAGTGCAAGATGA
*
194102 TAAGACCTACAGTGCATGATG
1 TAAGACCTACAGTGCAAGATG
194123 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (22 bp):
TAAGACCTACAGTGCAAGATGA
Found at i:194316 original size:555 final size:549
Alignment explanation
Indices: 193012--194199 Score: 1398
Period size: 555 Copynumber: 2.1 Consensus size: 549
193002 GTACGTTTTC
* * * * *
193012 AAAAAGCCTTCAGGAGCTTTTTTGATATTTAAAGCCTTCAGGTCATCTGTAAGACCTACAGTGCA
1 AAAAAGCCTTCCGGAGC-GTTTTGATATTTAAAGCCTCCGGGTCATCTATAAGACCTACAGTGCA
* ** * * **
193077 AGATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTGTAGGATGTTTTCAAAAAGCCTTCAG
65 AGATGATAACAAAT-AGAG-CATCCATAAGAACTACAGTCCAGGATGTTTTCAAAAAGCCTTCAG
* * * * ** * * *
193142 GATCTTTTTGATATTTAAAGCCTCCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCT
128 GA----GTTCATATGTAAAGCCTCCGAGTCAGATGTAAGGCATACAGTGCAAG-TCATAAGACCT
* * **
193207 TAGGGCCATCCATAAGACCTACAGTGTAGGATGTTTTCAAAAAGCCTTCAGAAGAATTTTGATAT
188 TAGGGACATCCATAAGACCTACAATACAGGATGTTTTCAAAAAGCCTTCAGAAGAATTTTGATAT
*
193272 TTAAAGCCTCCGGGTCATCTGTAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCATA
253 TTAAAGCCTCCGGGTCATCTATAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCATA
*
193337 AGACCTACAGTGCAGGAAGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTTCGGG
318 AGACCTACAGTGCAGGAAGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTCCGGG
193402 TCATCTATAAGACCTACAGTGCAAAATGATAAGACCTCAAGGCCATCCATAAGACCTACAGTGCA
383 TCATCTATAAGACCTACAGTGCAAAATGATAAGACCTCAAGGCCATCCATAAGACCTACAGTGCA
* * * * *
193467 TGATGTTTTCAAAAAGCCTTCGGGTCATCTATAAGACCTATAGTGCAAGATGATAAGACCTCAGA
448 GGATGTTTTCAAAAAGCATTCGGGGCATCTATAAAACCTATAGGGCAAGATGATAAGACCTCAGA
* ***
193532 GCCATCCATAAGACCTATAGTGCATGATGTTTTTTAA
513 GCCATCCATAAGACCTACAGTGCATGATGTTTAAAAA
* *
193569 AAAAAGCCTTCCGGAGCGTTTTGATATTTAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAA
1 AAAAAGCCTTCCGGAGCGTTTTGATATTTAAAGCCTCCGGGTCATCTATAAGACCTACAGTGCAA
* ** * * *
193634 GATGATAAGACCTCAGGGCCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGG
66 GATGATAACAAAT-AGAG-CATCCATAAGAACTACAGTCCAGGATGTTTTCAAAAAGCCTTCAGG
* * * ** * *
193699 AGATTTTTGATATTTAAAGCCTCCGGGTCATCTGTAAGGCCTACAGTGCAAGTGATAAGACCTTA
129 AG----TTCATATGTAAAGCCTCCGAGTCAGATGTAAGGCATACAGTGCAAGTCATAAGACCTTA
* * * * **
193764 GGGACATCCATAAGACCTATAATACAGGTTGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTT
190 GGGACATCCATAAGACCTACAATACAGGATGTTTTCAAAAAGCCTTCAGAAGAATTTTGATATTT
* *
193829 AAAGCCTCTGGGTCATCTATAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAG
255 AAAGCCTCCGGGTCATCTATAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCATAAG
*
193894 ACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTCCGGGTC
320 ACCTACAGTGCAGGAAGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTCCGGGTC
* * ** * *
193959 ATCTGTAAGACCTACAGTTCAGGATGATAAGACCTCAGGGCCATCCATAAGACCTATAGTGCAGG
385 ATCTATAAGACCTACAGTGCAAAATGATAAGACCTCAAGGCCATCCATAAGACCTACAGTGCAGG
* * **
194024 ATGTTTTCAAAAAGCATTCGGGAGCTATTTGATATTTAAAGCCT-TCGGGTC-ATCTG-TAAGAC
450 ATGTTTTCAAAAAGCATTCGGG-GC-ATCT-ATA---AAA-CCTATAGGG-CAAGATGATAAGAC
* * * *
194086 CTATAGTGCAAGAT-GATAAGACCTACAGTGCATGATGTTTAAAAA
507 CT-CAGAGC--CATCCATAAGACCTACAGTGCATGATGTTTAAAAA
* *
194131 AAAAAGCCTTCGGGAGC-TTTCTGATATTT-AAGACCTCCGGGTCATCTATAAGACCTCCAGTGC
1 AAAAAGCCTTCCGGAGCGTTT-TGATATTTAAAG-CCTCCGGGTCATCTATAAGACCTACAGTGC
*
194194 AGGATG
64 AAGATG
194200 TTTTCAAATG
Statistics
Matches: 565, Mismatches: 49, Indels: 29
0.88 0.08 0.05
Matches are distributed among these distances:
555 272 0.48
556 157 0.28
557 19 0.03
558 3 0.01
560 8 0.01
561 18 0.03
562 86 0.15
563 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (549 bp):
AAAAAGCCTTCCGGAGCGTTTTGATATTTAAAGCCTCCGGGTCATCTATAAGACCTACAGTGCAA
GATGATAACAAATAGAGCATCCATAAGAACTACAGTCCAGGATGTTTTCAAAAAGCCTTCAGGAG
TTCATATGTAAAGCCTCCGAGTCAGATGTAAGGCATACAGTGCAAGTCATAAGACCTTAGGGACA
TCCATAAGACCTACAATACAGGATGTTTTCAAAAAGCCTTCAGAAGAATTTTGATATTTAAAGCC
TCCGGGTCATCTATAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTAC
AGTGCAGGAAGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTCCGGGTCATCTAT
AAGACCTACAGTGCAAAATGATAAGACCTCAAGGCCATCCATAAGACCTACAGTGCAGGATGTTT
TCAAAAAGCATTCGGGGCATCTATAAAACCTATAGGGCAAGATGATAAGACCTCAGAGCCATCCA
TAAGACCTACAGTGCATGATGTTTAAAAA
Found at i:194476 original size:3 final size:3
Alignment explanation
Indices: 194468--194507 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
194458 TATTTTTAAA
* * *
194468 ATT ATT ATT ATT ATT ATT ATA AAT ATT ATT ATC ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
194508 AATAAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:194519 original size:24 final size:24
Alignment explanation
Indices: 194465--194520 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
194455 TTTTATTTTT
* *
194465 AAAATTATTATTATTATTATTATA
1 AAAATTATTATCATTATTAATATA
*
194489 AATATTATTATCATTATTAA-ATAA
1 AAAATTATTATCATTATTAATAT-A
194513 AAAATTAT
1 AAAATTAT
194521 ATTACAAGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
AAAATTATTATCATTATTAATATA
Found at i:195787 original size:18 final size:21
Alignment explanation
Indices: 195743--195791 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
195733 TTAAAATTAT
*
195743 TATTATTATTATAATAATAAT
1 TATTATTATTATAATAATAAA
195764 TATTATTATTA-AATAA-AAA
1 TATTATTATTATAATAATAAA
195783 T-TTA-TATTA
1 TATTATTATTA
195792 CAAGCCCATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 5 0.19
18 3 0.11
19 3 0.11
20 5 0.19
21 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TATTATTATTATAATAATAAA
Found at i:195787 original size:21 final size:21
Alignment explanation
Indices: 195741--195784 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
195731 TTTTAAAATT
*
195741 ATTATTATTATTATAATAATA
1 ATTATTATTATTATAATAAAA
195762 ATTATTATTATTA-AATAAAA
1 ATTATTATTATTATAATAAAA
195782 ATT
1 ATT
195785 TATATTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTATTATTATAATAAAA
Found at i:200415 original size:26 final size:26
Alignment explanation
Indices: 200383--200501 Score: 139
Period size: 26 Copynumber: 4.3 Consensus size: 26
200373 ACAAATTTTC
*
200383 TTAACGAACACGAGTCGAGCAAAATT
1 TTAACGAGCACGAGTCGAGCAAAATT
*
200409 TTAACGAGCACGAGTCGAACAAAATT
1 TTAACGAGCACGAGTCGAGCAAAATT
*
200435 TTAACGAGCAACAAGTCGAGCAACAAATTTT
1 TTAACGAGC-ACGAGTCGAGC-A-AAA--TT
* *
200466 CTTAATGAGCACGATTCGAGCAAAATT
1 -TTAACGAGCACGAGTCGAGCAAAATT
200493 TTAACGAGC
1 TTAACGAGC
200502 TTAATGAGCA
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
26 41 0.52
27 11 0.14
28 1 0.01
29 6 0.08
30 1 0.01
31 11 0.14
32 8 0.10
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (26 bp):
TTAACGAGCACGAGTCGAGCAAAATT
Found at i:216040 original size:15 final size:15
Alignment explanation
Indices: 216020--216057 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
216010 TCTTATCTTA
*
216020 CCCGCCCCGCATCCG
1 CCCGCCCAGCATCCG
216035 CCCGCCCAGCATCCG
1 CCCGCCCAGCATCCG
*
216050 CTCGCCCA
1 CCCGCCCA
216058 CTAAATACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.63, G:0.18, T:0.08
Consensus pattern (15 bp):
CCCGCCCAGCATCCG
Found at i:219268 original size:14 final size:14
Alignment explanation
Indices: 219249--219278 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
219239 TTTAGATTTT
*
219249 TTAAAATTACATTA
1 TTAAAAATACATTA
219263 TTAAAAATACATTA
1 TTAAAAATACATTA
219277 TT
1 TT
219279 GATAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAAAAATACATTA
Found at i:219845 original size:15 final size:16
Alignment explanation
Indices: 219814--219847 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
219804 AATAAAATAA
*
219814 AAATATTATTAAATTT
1 AAATATTAATAAATTT
219830 AAATATTAAT-AATTT
1 AAATATTAATAAATTT
219845 AAA
1 AAA
219848 AATACATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATTAATAAATTT
Found at i:220460 original size:17 final size:17
Alignment explanation
Indices: 220438--220475 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
220428 CAACTAAAAC
*
220438 TAAAATTGGGA-AAATAA
1 TAAAATCGGGACAAAT-A
220455 TAAAATCGGGACAAATA
1 TAAAATCGGGACAAATA
220472 TAAA
1 TAAA
220476 TGAATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.58, C:0.05, G:0.16, T:0.21
Consensus pattern (17 bp):
TAAAATCGGGACAAATA
Found at i:222890 original size:17 final size:17
Alignment explanation
Indices: 222864--222899 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
222854 GAGTTTGAAT
*
222864 TCGAGTTTGAATCGAGC
1 TCGAGCTTGAATCGAGC
222881 TCGAGCTTGAATCGAGC
1 TCGAGCTTGAATCGAGC
222898 TC
1 TC
222900 AAAATTGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (17 bp):
TCGAGCTTGAATCGAGC
Found at i:226399 original size:2 final size:2
Alignment explanation
Indices: 226392--226421 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
226382 ATGTACATGC
226392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
226422 TTACGGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:226706 original size:18 final size:18
Alignment explanation
Indices: 226681--226733 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
226671 ATGGATTATC
226681 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
226699 ATTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
226717 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
226734 AATATTCAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.17, C:0.23, G:0.32, T:0.28
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:230821 original size:17 final size:17
Alignment explanation
Indices: 230799--230833 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
230789 ACGCAATATG
230799 TATCTAAGTGTTTGATT
1 TATCTAAGTGTTTGATT
230816 TATCTAAGTGTTTGATT
1 TATCTAAGTGTTTGATT
230833 T
1 T
230834 GTCAGCAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.17, T:0.54
Consensus pattern (17 bp):
TATCTAAGTGTTTGATT
Found at i:236567 original size:3 final size:3
Alignment explanation
Indices: 236559--236680 Score: 208
Period size: 3 Copynumber: 40.7 Consensus size: 3
236549 AATATATATT
*
236559 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
236607 TAA TAA TAA TAA TAA TAA TAG TAA AAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
236655 AAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
236681 TGGATAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 111 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:237256 original size:116 final size:114
Alignment explanation
Indices: 236930--237715 Score: 1007
Period size: 116 Copynumber: 6.8 Consensus size: 114
236920 TCTTGATGAG
* ** * *
236930 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGGTTCTTTC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT-GAACTCTA
* * **
236992 TCTGGAAAAGCTGATCCATTAAATGATGGATTCATATAAAAGGTTGAACAAA
65 TCTGGAAAA--TGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
* * *
237044 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCGAA
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* *
237106 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
66 CTGG-AAA-ATGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
* *
237157 TTCTTCTTATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGCTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* * *
237222 CTGGCAGAAATAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAA
66 CTGG-A-AAATGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
*
237273 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* *
237338 CTGGCAGAAATAATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAA
66 CTGG-A-AAATGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
*
237389 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* * *** * *
237454 CTGG-CAATGTTTATCCATCAAATGATGAATTTAAACAAAAAGTTGAACAAG
66 CTGGAAAATG---ATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
* * *
237505 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCGAA
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* * * *
237567 CTGGAAAAGATGATCCATCCAATGACGGATTCAAGTAAAAGGTTGAACAAA
66 CTGG-AAA-ATGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
237618 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* *
237683 CTGGAAAAGCTGTTCCATCAAATGATGGATTCA
66 CTGGAAAA--TGATCCATCAAATGATGAATTCA
237716 AATCTTTGCT
Statistics
Matches: 603, Mismatches: 52, Indels: 32
0.88 0.08 0.05
Matches are distributed among these distances:
113 176 0.29
114 57 0.09
115 5 0.01
116 363 0.60
117 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (114 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
CTGGAAAATGATCCATCAAATGATGAATTCAGGTAAAAGGTTGAACAAA
Found at i:237663 original size:229 final size:229
Alignment explanation
Indices: 236930--237718 Score: 1103
Period size: 229 Copynumber: 3.4 Consensus size: 229
236920 TCTTGATGAG
* ** *
236930 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATG-GTTCTTT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTC-TA
* * * * *
236991 CTCTGGAAAAGCTGATCCATTAAATGATGGATTCATATAAAAGGTTGAACAAATTCTTCTCATTA
65 C-CTGGAAAAGTTTATCCATCAAATGATGAATTCAAATAAAAGGTTGAACAAATTCTTCTCATTA
237056 TGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATC
129 TGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATC
237121 CA-CCAAATGATGGATTCAGGTAAAAGGTTGAACAAA
194 CATCC-AATGATGGATTCAGGTAAAAGGTTGAACAAA
* * *
237157 TTCTTCTTATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGCTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
* * ** *
237222 CTGGCAGAAA--TAATCCATCAAGTGATGAATTCAGGTATAAGGTTGAACAAATTCTTCTCATTA
66 CTGG-A-AAAGTTTATCCATCAAATGATGAATTCAAATAAAAGGTTGAACAAATTCTTCTCATTA
* * * *
237285 TGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAGAA-AT
129 TGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCGAACTGG-AAAAGAT
* *
237349 AATCCAT-CAAGTGATGAATTCAGGTAAAAGGTTGAACAAA
190 GATCCATCCAA-TGATGGATTCAGGTAAAAGGTTGAACAAA
237389 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
* * * * * *
237454 CTGGCAATGTTTATCCATCAAATGATGAATTTAAACAAAAAGTTGAACAAGTTCTTCTCATTATG
66 CTGGAAAAGTTTATCCATCAAATGATGAATTCAAATAAAAGGTTGAACAAATTCTTCTCATTATG
237519 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCA
131 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCA
* *
237584 TCCAATGACGGATTCAAGTAAAAGGTTGAACAAA
196 TCCAATGATGGATTCAGGTAAAAGGTTGAACAAA
*
237618 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
* *
237683 CTGGAAAAGCTGT-TCCATCAAATGATGGATTCAAAT
66 CTGGAAAAG-TTTATCCATCAAATGATGAATTCAAAT
237719 CTTTGCTAAA
Statistics
Matches: 496, Mismatches: 49, Indels: 32
0.86 0.08 0.06
Matches are distributed among these distances:
227 35 0.07
228 3 0.01
229 226 0.46
230 25 0.05
231 7 0.01
232 197 0.40
233 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (229 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
CTGGAAAAGTTTATCCATCAAATGATGAATTCAAATAAAAGGTTGAACAAATTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCA
TCCAATGATGGATTCAGGTAAAAGGTTGAACAAA
Found at i:237702 original size:345 final size:343
Alignment explanation
Indices: 236930--237715 Score: 1075
Period size: 345 Copynumber: 2.3 Consensus size: 343
236920 TCTTGATGAG
* ** * *
236930 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGGTTCTTTC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT-GAACTCTA
* *
236992 TCTGGAAAAGCTGATCCATTAAATGATGGATTCATATAAAAGGTTGAACAAATTCTTCTCATTAT
65 TCTGGAAAAGCTGATCCATCAAATGATGGATTCAGATAAAAGGTTGAACAAATTCTTCTCATTAT
237057 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCC
130 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCC
* *** * * *
237122 ACCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTTATTATGAATTTCTTCTTCCTTC
195 ACCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTC
* * * *
237187 TTCAGATGACGAGCTCTTCTCATTATGAACTCTATCTGGCAGAAATAATCCATCAAGTGATGAAT
260 TTCAGAT-A-GAGCTCTTCTCATTATGAACTCGAACTGGCAAAAATAATCCATCAAGTGACGAAT
* *
237252 TCAGGTATAAGGTTGAACAAA
323 TCAAGTAAAAGGTTGAACAAA
*
237273 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
* * * *
237338 CTGGCAGAAA--TAATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTA
66 CTGG-A-AAAGCTGATCCATCAAATGATGGATTCAGATAAAAGGTTGAACAAATTCTTCTCATTA
* * * * * * *
237401 TGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTT
129 TGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATG
* * *
237466 ATCCATCAAATGATGAATTTAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTC
191 ATCCACCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
* *
237531 CTTCTTCAGAT-GAGTTCTTCTCATTATGAACTCGAACTGG-AAAAGATGATCCATCCAA-TGAC
256 CTTCTTCAGATAGAGCTCTTCTCATTATGAACTCGAACTGGCAAAA-ATAATCCAT-CAAGTGAC
*
237593 GGATTCAAGTAAAAGGTTGAACAAA
319 GAATTCAAGTAAAAGGTTGAACAAA
237618 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
*
237683 CTGGAAAAGCTGTTCCATCAAATGATGGATTCA
66 CTGGAAAAGCTGATCCATCAAATGATGGATTCA
237716 AATCTTTGCT
Statistics
Matches: 388, Mismatches: 43, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
343 39 0.10
344 4 0.01
345 225 0.58
346 20 0.05
347 3 0.01
348 97 0.25
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (343 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAT
CTGGAAAAGCTGATCCATCAAATGATGGATTCAGATAAAAGGTTGAACAAATTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGATGATCCA
CCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
TCAGATAGAGCTCTTCTCATTATGAACTCGAACTGGCAAAAATAATCCATCAAGTGACGAATTCA
AGTAAAAGGTTGAACAAA
Found at i:238502 original size:83 final size:83
Alignment explanation
Indices: 238359--239306 Score: 1554
Period size: 83 Copynumber: 11.6 Consensus size: 83
238349 GTAGTTCTTA
* * *
238359 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238424 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
*
238442 TCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-ACAAATTTATCTTCCA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACAAATTTATCTTCCA
238506 AATTCAATGATTGGTTCTG
65 AATTCAATGATTGGTTCTG
238525 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238590 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
238608 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238673 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
238691 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238756 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
238774 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238839 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
238857 CCAAACCAGATCAGAT-ACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
238921 ATTCAATGATTGGTTCTG
66 ATTCAATGATTGGTTCTG
* *
238939 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAA
1 CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
*
239004 ATTCAATAATTGGTTCTG
66 ATTCAATGATTGGTTCTG
* * *
239022 TCC-AACCAGATCAGATGACTCAAAGAACACTTCCAGAAGATGCTATTGAGC------ATCCTCC
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACAAATTTATCTTCC
*
239080 AAATTCAATGATTGATTCTG
64 AAATTCAATGATTGGTTCTG
* *
239100 TCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGC------ATCCTCC
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAACAAATTTATCTTCC
*
239158 AAATTCAATGATTGATTCTG
64 AAATTCAATGATTGGTTCTG
* *
239178 TCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCCA
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCA
*
239242 AATTCAATGATTGATTCTG
65 AATTCAATGATTGGTTCTG
239261 TCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 -CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
239307 CGAGTGTCCA
Statistics
Matches: 837, Mismatches: 17, Indels: 22
0.96 0.02 0.03
Matches are distributed among these distances:
77 3 0.00
78 146 0.17
82 84 0.10
83 597 0.71
84 7 0.01
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (83 bp):
CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACAAATTTATCTTCCAA
ATTCAATGATTGGTTCTG
Found at i:240154 original size:9 final size:8
Alignment explanation
Indices: 240141--240206 Score: 51
Period size: 8 Copynumber: 7.8 Consensus size: 8
240131 CTTGACCCCC
240141 TTTCTTTT
1 TTTCTTTT
240149 TCTTCTCTTT
1 T-TTCT-TTT
*
240159 TTTCATTT
1 TTTCTTTT
* *
240167 TCTATTATT
1 TTTCTT-TT
* *
240176 ATTATTTT
1 TTTCTTTT
240184 TTTCTTTT
1 TTTCTTTT
240192 TTCTCTTTT
1 TT-TCTTTT
240201 TTTCTT
1 TTTCTT
240207 CAAGCATAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
8 21 0.46
9 21 0.46
10 4 0.09
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCTTTT
Found at i:252466 original size:15 final size:16
Alignment explanation
Indices: 252441--252470 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
252431 ATTAGTGTTT
252441 TTTTTTCTTTTCTCTG
1 TTTTTTCTTTTCTCTG
252457 TTTTTT-TTTTCTCT
1 TTTTTTCTTTTCTCT
252471 CCGGTTCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTTCTTTTCTCTG
Found at i:252944 original size:3 final size:3
Alignment explanation
Indices: 252926--253044 Score: 177
Period size: 3 Copynumber: 39.7 Consensus size: 3
252916 ATTATTTATT
* *
252926 TAA TATA TAT TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
252972 TAA TAA TAA TAA -AA TAA TAA TAA TAG TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
253019 TAA AAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
253045 TGGATAAAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
2 2 0.02
3 99 0.95
4 3 0.03
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:259371 original size:14 final size:15
Alignment explanation
Indices: 259339--259371 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
259329 TTATTTTCCT
259339 TAAAAGTAATTTATA
1 TAAAAGTAATTTATA
*
259354 TAAAATTAATTT-TA
1 TAAAAGTAATTTATA
259368 TAAA
1 TAAA
259372 TAAGATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TAAAAGTAATTTATA
Found at i:259497 original size:15 final size:14
Alignment explanation
Indices: 259467--259527 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
259457 TATCAAAAGT
259467 AATAATAAAA-TAA
1 AATAATAAAATTAA
259480 AATAATAATAATTAA
1 AATAATAA-AATTAA
259495 AATGAA-AGAAATTAA
1 AAT-AATA-AAATTAA
*
259510 AAGTAATAATATTAA
1 AA-TAATAAAATTAA
259525 AAT
1 AAT
259528 CTATAGGATC
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
13 8 0.20
14 3 0.07
15 25 0.61
16 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (14 bp):
AATAATAAAATTAA
Found at i:260931 original size:3 final size:3
Alignment explanation
Indices: 260911--260968 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
260901 ATTTATTTAT
* * *
260911 TAA TAA TATA TAA CAA TAA TAA TAA T-A TTA TAA TAA TAA TAA TTA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
260956 -AA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA
260969 AGTAAACTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
2 5 0.11
3 38 0.83
4 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:260945 original size:14 final size:15
Alignment explanation
Indices: 260911--260963 Score: 65
Period size: 14 Copynumber: 3.6 Consensus size: 15
260901 ATTTATTTAT
**
260911 TAATAATATATAACAA
1 TAATAATA-ATAATTA
260927 TAATAATAAT-ATTA
1 TAATAATAATAATTA
260941 TAATAATAATAATTA
1 TAATAATAATAATTA
260956 -AATAATAA
1 TAATAATAA
260964 AATAAAGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 20 0.59
15 6 0.18
16 8 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:260945 original size:17 final size:17
Alignment explanation
Indices: 260911--260953 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
260901 ATTTATTTAT
260911 TAATAAT-ATATAACAA
1 TAATAATAATATAACAA
* *
260927 TAATAATAATATTATAA
1 TAATAATAATATAACAA
260944 TAATAATAAT
1 TAATAATAAT
260954 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
TAATAATAATATAACAA
Found at i:260974 original size:17 final size:17
Alignment explanation
Indices: 260925--260974 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
260915 AATATATAAC
*
260925 AATAATAATAA-TATTAT
1 AATAATAATAAGTA-AAT
*
260942 AATAATAATAATTAAAT
1 AATAATAATAAGTAAAT
260959 AATAA-AATAAAGTAAA
1 AATAATAAT-AAGTAAA
260975 CTGAAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 3 0.10
17 24 0.83
18 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AATAATAATAAGTAAAT
Found at i:261215 original size:76 final size:76
Alignment explanation
Indices: 261086--261574 Score: 789
Period size: 76 Copynumber: 6.4 Consensus size: 76
261076 GAAATGTTGA
* * * * * * **
261086 AAACATCATGCACTGAAGGGCTTACAGGTGACTCGAAGGTTTTGAAATTATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
261151 AGGCTTTTTCG
66 AGGCTTTTTGG
* *
261162 AAACATCATGCACTGTAGGACTTACATATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
261227 AGGCTTTTTGG
66 AGGCTTTTTGG
*
261238 AAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
261303 AGGCTTTTTTTTTG
66 AGGC---TTTTTGG
* *
261317 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAGAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
261382 AGGCTTTTTGG
66 AGGCTTTTTGG
261393 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
261458 AGGCTTTTTGG
66 AGGCTTTTTGG
*
261469 AAACATCATGCTCTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
261534 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
261545 AAACATCATGCTCTGTAGGACTTACAGATG
1 AAACATCATGCACTGCAGGACTTACAGATG
261575 TAGGAAATAG
Statistics
Matches: 388, Mismatches: 22, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
76 316 0.81
79 72 0.19
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (76 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:261490 original size:231 final size:228
Alignment explanation
Indices: 261086--261574 Score: 809
Period size: 231 Copynumber: 2.1 Consensus size: 228
261076 GAAATGTTGA
* * * * * *
261086 AAACATCATGCACTGAAGGGCTTACAGGTGACTCGAAGGTTTTGAAATTATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAATCATCAAAAAGCTCCCGA
* *
261151 AGGCTTTTTCGAAACATCATGCACTGTAGGACTTACATATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTCGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
261216 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTT
*
261281 GAAAACATCAAAAAGCTCCCGAAGGCTTTTTTTTTG
196 GAAAACATCAAAAAGCTCCCGAAGGC---TTTTTGG
*
261317 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAGAA-CATCAAAAAGCTCCCG
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGA-AATCATCAAAAAGCTCCCG
*
261381 AAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCA
65 AAGGCTTTTTCGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCA
* *
261446 AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCTCTGCAGGACTTACAGATGACCCTAAGGCTT
130 AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTT
261511 TGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
195 TGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
*
261545 AAACATCATGCTCTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
261575 TAGGAAATAG
Statistics
Matches: 243, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
228 35 0.14
231 206 0.85
232 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (228 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAATCATCAAAAAGCTCCCGA
AGGCTTTTTCGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTACAGGACTTACAGATGACCCTAAGGCTTT
GAAAACATCAAAAAGCTCCCGAAGGCTTTTTGG
Found at i:262012 original size:76 final size:76
Alignment explanation
Indices: 261698--261985 Score: 531
Period size: 76 Copynumber: 3.8 Consensus size: 76
261688 TCAAAATAAC
*
261698 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCT
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
261763 AAGGCTTTGAA
66 AAGGCTTTGAA
*
261774 AACATCAAAAAGCTTCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
261839 AAGGCTTTGAA
66 AAGGCTTTGAA
*
261850 AACATCAAAAAGCTCCCTAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
261915 AAGGCTTTGAA
66 AAGGCTTTGAA
* *
261926 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCATGATTTACAGATG
1 AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATG
261986 TAGGAAATAG
Statistics
Matches: 205, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 205 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (76 bp):
AACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCT
AAGGCTTTGAA
Found at i:262261 original size:164 final size:166
Alignment explanation
Indices: 261988--262310 Score: 569
Period size: 164 Copynumber: 2.0 Consensus size: 166
261978 TACAGATGTA
*
261988 GGAAATAGTTTAATAAGTAAAAAAACTAAGGAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
1 GGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
** *
262053 TAGAAAAGATTGAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAACATGTTGA
66 TAGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAACATGTCGA
*
262118 TTGGGTAACATGCCCCAATCTCAAGATAAGGCTGTT
131 TTAGGTAACATGCCCCAATCTCAAGATAAGGCTGTT
*
262154 GGAAATAGTTTACTAAGT-AAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCA-TTT
1 GGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
*
262217 TAGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCGAAATAACATGTCGA
66 TAGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAACATGTCGA
262282 TTAGGTAACATGCCCCAATCTCAAGATAA
131 TTAGGTAACATGCCCCAATCTCAAGATAA
262311 TGTTCATTTT
Statistics
Matches: 150, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
164 92 0.61
165 41 0.27
166 17 0.11
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (166 bp):
GGAAATAGTTTAATAAGTAAAAAAACTAAGAAAATCGTTTTCTTACTTTTCAACAATTTCATTTT
TAGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATTTTTCAAAATAACATGTCGA
TTAGGTAACATGCCCCAATCTCAAGATAAGGCTGTT
Found at i:272976 original size:14 final size:15
Alignment explanation
Indices: 272944--272976 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
272934 TTATTTTCCT
272944 TAAAAGTAATTTATA
1 TAAAAGTAATTTATA
*
272959 TAAAATTAATTT-TA
1 TAAAAGTAATTTATA
272973 TAAA
1 TAAA
272977 TAGGATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TAAAAGTAATTTATA
Found at i:273102 original size:15 final size:15
Alignment explanation
Indices: 273082--273131 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
273072 AATAATAAAA
273082 TAAAATAAAAATAAT
1 TAAAATAAAAATAAT
*
273097 TAAAATGAAAGA-AAT
1 TAAAAT-AAAAATAAT
*
273112 TAAAAGTAATAAT-AT
1 TAAAA-TAAAAATAAT
273127 TAAAA
1 TAAAA
273132 ACTATAGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
TAAAATAAAAATAAT
Found at i:280965 original size:52 final size:52
Alignment explanation
Indices: 280862--280965 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
280852 TGCTTTACAA
* *
280862 GTTTTCTTTGTAATCAAATATTCATCCCTATAAATAGATATTAAGAATTAAG
1 GTTTTCTTTGTAATCAAATATTCATCCATATAAATAGATACTAAGAATTAAG
*
280914 GTTTTCTTTGTAATCAAATATTCATCCATGTAAATAGATACTAAGAATTAAG
1 GTTTTCTTTGTAATCAAATATTCATCCATATAAATAGATACTAAGAATTAAG
280966 ATTAGAGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (52 bp):
GTTTTCTTTGTAATCAAATATTCATCCATATAAATAGATACTAAGAATTAAG
Found at i:281906 original size:29 final size:30
Alignment explanation
Indices: 281870--281954 Score: 120
Period size: 29 Copynumber: 2.9 Consensus size: 30
281860 GTAAACACCA
* **
281870 TTTTTCAACACCAACATCTTTCACCCCA-T
1 TTTTTCAACACCAACACCCATCACCCCATT
*
281899 TTTTTCAACACCAACACCCATCATCCCATT
1 TTTTTCAACACCAACACCCATCACCCCATT
281929 TTTTTCAACACCAAC-CCCATCACCCC
1 TTTTTCAACACCAACACCCATCACCCC
281955 TTGTTCCCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
29 34 0.68
30 16 0.32
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.29
Consensus pattern (30 bp):
TTTTTCAACACCAACACCCATCACCCCATT
Found at i:290655 original size:12 final size:12
Alignment explanation
Indices: 290638--290663 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
290628 GAAGGACCGT
290638 TTCGGGCTCGAA
1 TTCGGGCTCGAA
290650 TTCGGGCTCGAA
1 TTCGGGCTCGAA
290662 TT
1 TT
290664 TAAGCCCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (12 bp):
TTCGGGCTCGAA
Found at i:294735 original size:12 final size:12
Alignment explanation
Indices: 294714--294748 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
294704 ATTAAGCCTG
294714 AAAAGAAAAAGAA
1 AAAAG-AAAAGAA
294727 AAAAGAAAAGAA
1 AAAAGAAAAGAA
294739 AAAAGAAAAG
1 AAAAGAAAAG
294749 GGGAGGTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:296233 original size:262 final size:262
Alignment explanation
Indices: 295608--296397 Score: 1352
Period size: 262 Copynumber: 3.0 Consensus size: 262
295598 CGACTTTTGC
*
295608 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAGAAAGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAAGAG
* *
295673 GTGGATCGACATTTTTAT-TTTCGCTCAAATCAATCGCAGAATGAGTTGGATCAGCGTCAACTTT
66 GTGGATCGACATTTTTATCTTT-GCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTT
* * *
295737 TAGCTCGATTCTATCACA-AAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAA
130 TTGCTTGATTCTATCACAGAAA-GAGGTAGATCGGCATCGACATCTCGTTCGATTCCATCACAAA
*
295801 ATGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAA
194 AGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAA
295865 CTTTTT
259 C--TTT
* *
295871 GCTCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAGG
1 --TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAAG
* *
295936 AGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAGCGTCAACTT
64 AGGTGGATCGACATTTTTATCTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTT
* *
296001 TTTGCTTGATTCTATCACAGAAAGAGGTAGACCGGCATCGACATCTCGTTCGATTCCATCACTAA
129 TTTGCTTGATTCTATCACAGAAAGAGGTAGATCGGCATCGACATCTCGTTCGATTCCATCACAAA
296066 AGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAA
194 AGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAA
296131 CTTT
259 CTTT
296135 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAAGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAAGAG
*
296200 GTGGATCGACATTTTTATCTTTGCTCAAATCCATCGCAAAAGGAGTTGGATCAGCGTCAACTTTT
66 GTGGATCGACATTTTTATCTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
*
296265 TGCTTGATTCTATCACAGAAGGAGGTAGATCGGCATCGACATCTCGTTCGATTCCATCACAAAAG
131 TGCTTGATTCTATCACAGAAAGAGGTAGATCGGCATCGACATCTCGTTCGATTCCATCACAAAAG
* *
296330 GAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTCGATCAACGTCAACT
196 GAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACT
296395 TT
261 TT
296397 T
1 T
296398 AGCTCGATTC
Statistics
Matches: 499, Mismatches: 23, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
262 253 0.51
264 3 0.01
265 196 0.39
266 47 0.09
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (262 bp):
TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGTTCGATTCCATCACAAAAAGAG
GTGGATCGACATTTTTATCTTTGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
TGCTTGATTCTATCACAGAAAGAGGTAGATCGGCATCGACATCTCGTTCGATTCCATCACAAAAG
GAGGTGGATCGACATTTTTATCTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACT
TT
Found at i:296340 original size:44 final size:44
Alignment explanation
Indices: 295565--296339 Score: 381
Period size: 44 Copynumber: 17.6 Consensus size: 44
295555 AACTTTTTGC
* * * * * *
295565 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGAC-TTTTGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* * *
295608 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
**** * *
295652 TCGATTCCATCACAGAAA-GAGGTGGATC-GACATTTTTATTTTCGC
1 TCGATTCCATCACA-AAAGGAGGTGGATCAG-CATCGACA-TCTCGT
* * * * * * * * * * * * *
295697 TCAAATCAATCGCAGAATGAGTTGGATCAGCGTCAACTTTTAGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* *
295741 TCGATTCTATCACAAAAGGAGGTAGATCAGCATCGACATCTCGT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* **** * *
295785 TCGATTCCATCACAAAATGAGGTGGATC-GACATTTTTATTTCGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAG-CATCGACATCTCGT
* * * * * * * * * * *
295829 TCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTTTGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* * * *
295873 TCGATTCTATCACAGAATGAGGTAGATCAGCATCGACATCTCGT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
**** *
295917 TCGATTCCATCACAAAAGGAGGTGGATC-GACATTTTTATCTTCGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAG-CATCGACATC-TCGT
* * * * * * * * *
295962 TCAAATCCATCACAGAAGGAGTTGGATCAGCGTCAACTTTTTGCT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCG-T
* * * *
296007 T-GATTCTATCACAGAAA-GAGGTAGACCGGCATCGACATCTCGT
1 TCGATTCCATCACA-AAAGGAGGTGGATCAGCATCGACATCTCGT
* **** *
296050 TCGATTCCATCACTAAAGGAGGTGGATC-GACATTTTTATCTTCGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAG-CATCGACATC-TCGT
* * * * * * *
296095 TCAAATCCATCGCAGAAGGAGTTGGATCAGCGTC-A-A-CT-TT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* * *
296135 TCGATTCTATCACAGAAGGAGGTAGATCAGCATCGACATCTCGT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
* **** * *
296179 TCGATTCCATCACAAAAAGAGGTGGATC-GACATTTTTATCTTTGC
1 TCGATTCCATCACAAAAGGAGGTGGATCAG-CATCGACATC-TCGT
* * * * * * * * *
296224 TCAAATCCATCGCAAAAGGAGTTGGATCAGCGTCAACTTTTTGCT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCG-T
* * * *
296269 T-GATTCTATCACAGAAGGAGGTAGATCGGCATCGACATCTCGT
1 TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
296312 TCGATTCCATCACAAAAGGAGGTGGATC
1 TCGATTCCATCACAAAAGGAGGTGGATC
296340 GACATTTTTA
Statistics
Matches: 529, Mismatches: 176, Indels: 53
0.70 0.23 0.07
Matches are distributed among these distances:
40 27 0.05
41 2 0.00
42 2 0.00
43 52 0.10
44 325 0.61
45 117 0.22
46 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
TCGATTCCATCACAAAAGGAGGTGGATCAGCATCGACATCTCGT
Found at i:296429 original size:133 final size:133
Alignment explanation
Indices: 295577--296414 Score: 1393
Period size: 133 Copynumber: 6.3 Consensus size: 133
295567 GATTCTATCA
* * * *
295577 CAGAAGGAGGTAGATCAGCATCGAC-TTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
* *
295641 CGACATCTCGTTCGATTCCATCACAGAAA-GAGGTGGATCGACATTTTTATTTTCGCTCAAATCA
66 CGACATCTCGTTCGATTCCATCACA-AAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCC
295705 ATCG
130 ATCG
* * *
295709 CAGAATGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAAAAGGAGGTAGATCAGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
*
295774 CGACATCTCGTTCGATTCCATCACAAAATGAGGTGGATCGACATTTTTAT-TTCGCTCAAATCCA
66 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
295838 TCG
131 TCG
*
295841 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
295906 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
66 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
*
295971 TCA
131 TCG
* * * *
295974 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTTGATTCTATCACAGAAAGAGGTAGACCGGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
*
296039 CGACATCTCGTTCGATTCCATCACTAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
66 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
296104 TCG
131 TCG
296107 CAGAAGGAGTTGGATCAGCGTCAAC--TTT--TCGATTCTATCACAGAAGGAGGTAGATCAGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
* *
296168 CGACATCTCGTTCGATTCCATCACAAAAAGAGGTGGATCGACATTTTTATCTTTGCTCAAATCCA
66 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
296233 TCG
131 TCG
* * *
296236 CAAAAGGAGTTGGATCAGCGTCAACTTTTTGCTTGATTCTATCACAGAAGGAGGTAGATCGGCAT
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
296301 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
66 CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
296366 TCG
131 TCG
* * *
296369 CAGAAGGAGTTCGATCAACGTCAACTTTTAGCTCGATTCTATCACA
1 CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACA
296415 TGAGGAGTTG
Statistics
Matches: 662, Mismatches: 37, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
129 118 0.18
131 6 0.01
132 149 0.23
133 389 0.59
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (133 bp):
CAGAAGGAGTTGGATCAGCGTCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCAT
CGACATCTCGTTCGATTCCATCACAAAAGGAGGTGGATCGACATTTTTATCTTCGCTCAAATCCA
TCG
Found at i:296639 original size:29 final size:30
Alignment explanation
Indices: 296601--296674 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
296591 GTAAACACCA
*
296601 TTTTTCAACACCAACACCTACCACCCCA-T
1 TTTTTCAACACCAACACCCACCACCCCATT
* * *
296630 TTTTTAAACACCAACACCCATCATCCCATT
1 TTTTTCAACACCAACACCCACCACCCCATT
296660 TTTTTCAACACCAAC
1 TTTTTCAACACCAAC
296675 CCATCACCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 24 0.62
30 15 0.38
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.28
Consensus pattern (30 bp):
TTTTTCAACACCAACACCCACCACCCCATT
Found at i:299976 original size:17 final size:17
Alignment explanation
Indices: 299954--300009 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
299944 TAAAATAAGA
299954 TAATATGATTTTTTTAT
1 TAATATGATTTTTTTAT
* **
299971 TAATATGAGTTAATTA-
1 TAATATGATTTTTTTAT
299987 TAATATGATATATTTTTAT
1 TAATATGAT-T-TTTTTAT
300006 TAAT
1 TAAT
300010 CGAAAAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 8 0.27
17 14 0.47
18 4 0.13
19 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TAATATGATTTTTTTAT
Found at i:300955 original size:31 final size:30
Alignment explanation
Indices: 300892--300956 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
300882 AAATTTATAG
*
300892 TTAAGATAAAAATAAAATATATTTCTTAAA
1 TTAAAATAAAAATAAAATATATTTCTTAAA
*
300922 TTAAAATAAGAATAAAATATGCATTT-TTAAA
1 TTAAAATAAAAATAAAATAT--ATTTCTTAAA
300953 TTAA
1 TTAA
300957 TATATATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 18 0.58
31 9 0.29
32 4 0.13
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (30 bp):
TTAAAATAAAAATAAAATATATTTCTTAAA
Found at i:300963 original size:2 final size:2
Alignment explanation
Indices: 300956--300994 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
300946 TTTTAAATTA
* *
300956 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
300995 ATAAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:305850 original size:2 final size:2
Alignment explanation
Indices: 305835--305895 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
305825 ATTCAAAATA
305835 AT AT -T AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
305875 AT AT AT A- AT -T AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
305896 ACACTCTTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
1 4 0.07
2 51 0.93
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:306206 original size:27 final size:27
Alignment explanation
Indices: 306171--306226 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
306161 CCACCATCAC
* *
306171 CACTTTGAACTTGAAACTCCATAGCAT
1 CACTTTGAACTTGAAAATCCACAGCAT
306198 CACTTTGAACTTGAAAATCCACAGCAT
1 CACTTTGAACTTGAAAATCCACAGCAT
306225 CA
1 CA
306227 AGATCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.27
Consensus pattern (27 bp):
CACTTTGAACTTGAAAATCCACAGCAT
Found at i:306522 original size:20 final size:19
Alignment explanation
Indices: 306472--306534 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
306462 AAAATCGCCA
306472 GTTCACACCGGTTTTTCCG
1 GTTCACACCGGTTTTTCCG
306491 GTTCACACCGGTTTTGT-CG
1 GTTCACACCGGTTTT-TCCG
* * *
306510 GTTCCCAACCGGTTCTACCG
1 GTTCAC-ACCGGTTTTTCCG
306530 GTTCA
1 GTTCA
306535 TTGTAAAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 22 0.59
20 15 0.41
ACGTcount: A:0.13, C:0.32, G:0.22, T:0.33
Consensus pattern (19 bp):
GTTCACACCGGTTTTTCCG
Found at i:306839 original size:21 final size:20
Alignment explanation
Indices: 306805--306843 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
306795 TGACATGTTT
306805 ATATTTTAAAAAAATATAAA
1 ATATTTTAAAAAAATATAAA
*
306825 ATATTATTTAAAAAATATA
1 ATATT-TTAAAAAAATATA
306844 TTTTTAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATTTTAAAAAAATATAAA
Found at i:311414 original size:17 final size:18
Alignment explanation
Indices: 311375--311421 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
311365 TGTTTCTGAG
*
311375 GGAATTTGAATCTGTGAA
1 GGAATTAGAATCTGTGAA
*
311393 GGAATTAGAATCTGT-CA
1 GGAATTAGAATCTGTGAA
311410 GGAATTAGAATC
1 GGAATTAGAATC
311422 CAATTCCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (18 bp):
GGAATTAGAATCTGTGAA
Found at i:312195 original size:251 final size:255
Alignment explanation
Indices: 311741--312286 Score: 852
Period size: 251 Copynumber: 2.1 Consensus size: 255
311731 CGACCCGACA
*
311741 ACCCAACCCGACCCGAATATATGAATTAGAAACCTGACCCGAAATAATAAAAAATTATTTTTTAT
1 ACCCGACCCGACCCGAATATATGAATTAGAAACCTGACCCGAAATAATAAAAAATTATTTTTTAT
*
311806 TCAATAAAAACAATGACTTAATTGAAAAAAATTATATATAGAGGGATACTATTGTAATTATTCCT
66 TCAATAAAAACAATGACTTAATTGAAAAAAATTATATAGAGAGGGATACTATTGTAATTATTCCT
* *
311871 AAATATATAAGGTTAAATTATATATCTTTTGGGTCGGGTCGGGTATTTTTCACCCTAAACCCGAA
131 AAATATATAAGGTAAAATTATATATATTTTGGGTCGGGTCGGGTATTTTTCACCCTAAACCCGAA
*
311936 -CCCGACCCGAATAGCACACTT-AAAAA-ACC-GACCCGACCCGACCAAAATAAAGTTTC
196 CCCCGACCCGAATAGCACACTTAAAAAACACCTGACCCGACCAGACCAAAATAAAGTTTC
*
311992 ACCCGACCCGACCCAAATATATGAATTAGAAACCTGACCCGAAATAATAAAAAAATTA-TTTTTA
1 ACCCGACCCGACCCGAATATATGAATTAGAAACCTGACCCGAAATAAT-AAAAAATTATTTTTTA
* * * *
312056 TTCAATAAAAACAGTGACTTAATTG-AAAAAATTATATAGATAGGGGTATTATTGTAATTATTCC
65 TTCAATAAAAACAATGACTTAATTGAAAAAAATTATATAGAGAGGGATACTATTGTAATTATTCC
312120 TAAATATATAAGGTAAAATTATATATATTTTCGGGTCGGGTCGGGTATTTTTCACCCTAAACCCG
130 TAAATATATAAGGTAAAATTATATATATTTT-GGGTCGGGTCGGGTATTTTTCACCCTAAACCCG
*
312185 AACTCGACCCGACCCGAATATCACACTTAAAAAAACCGACCTGACCCGACCAGACCAAAATAAAG
194 AA--C--CCCGACCCGAATAGCACACTT-AAAAAA-C-ACCTGACCCGACCAGACCAAAATAAAG
*
312250 TTTT
252 TTTC
*
312254 ACCCGACCCGACCTGAATATATGAATTAGAAAC
1 ACCCGACCCGACCCGAATATATGAATTAGAAAC
312287 ACGACCTGAC
Statistics
Matches: 268, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
250 64 0.24
251 111 0.41
252 9 0.03
256 20 0.07
258 5 0.02
261 3 0.01
262 56 0.21
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (255 bp):
ACCCGACCCGACCCGAATATATGAATTAGAAACCTGACCCGAAATAATAAAAAATTATTTTTTAT
TCAATAAAAACAATGACTTAATTGAAAAAAATTATATAGAGAGGGATACTATTGTAATTATTCCT
AAATATATAAGGTAAAATTATATATATTTTGGGTCGGGTCGGGTATTTTTCACCCTAAACCCGAA
CCCCGACCCGAATAGCACACTTAAAAAACACCTGACCCGACCAGACCAAAATAAAGTTTC
Found at i:319775 original size:20 final size:21
Alignment explanation
Indices: 319746--319784 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
319736 CGTTAGACCC
319746 AAAGTATTGAAACT-TTAATG
1 AAAGTATTGAAACTCTTAATG
*
319766 AAAGTTTTGAAACTCTTAA
1 AAAGTATTGAAACTCTTAA
319785 GATAATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.36
Consensus pattern (21 bp):
AAAGTATTGAAACTCTTAATG
Found at i:322412 original size:20 final size:19
Alignment explanation
Indices: 322386--322440 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
322376 AATTTAATGG
322386 AAGTTTCAAAACTCTTAAGA
1 AAGTTTCAAAACTCTT-AGA
* * * *
322406 TAGTTTCGAAACTATTGGA
1 AAGTTTCAAAACTCTTAGA
322425 AAGTTTCAAAACTCTT
1 AAGTTTCAAAACTCTT
322441 GTAGAAGTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (19 bp):
AAGTTTCAAAACTCTTAGA
Found at i:322457 original size:20 final size:20
Alignment explanation
Indices: 322385--322450 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
322375 AAATTTAATG
322385 GAAGTTTCAAAACTCTT-AA
1 GAAGTTTCAAAACTCTTGAA
* * *
322404 GATAGTTTCGAAACTATTGGA
1 GA-AGTTTCAAAACTCTTGAA
*
322425 -AAGTTTCAAAACTCTTGTA
1 GAAGTTTCAAAACTCTTGAA
322444 GAAGTTT
1 GAAGTTT
322451 AGAAACTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
19 17 0.45
20 20 0.53
21 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (20 bp):
GAAGTTTCAAAACTCTTGAA
Found at i:323483 original size:22 final size:22
Alignment explanation
Indices: 323456--323505 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
323446 TAGACTCGAC
323456 AGTCACATCAAATTCAGACTCT
1 AGTCACATCAAATTCAGACTCT
*
323478 AGTCACATCGAATTCAGACTCT
1 AGTCACATCAAATTCAGACTCT
323500 AGTCAC
1 AGTCAC
323506 GTTATCATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (22 bp):
AGTCACATCAAATTCAGACTCT
Found at i:326211 original size:2 final size:2
Alignment explanation
Indices: 326204--326236 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
326194 TATTTTTGAA
326204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
326237 ATTATTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:327143 original size:13 final size:15
Alignment explanation
Indices: 327120--327151 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
327110 AAATTATAAT
327120 TTATCTTT-AAAAAA
1 TTATCTTTAAAAAAA
327134 TTAT-TTTAAAAAAA
1 TTATCTTTAAAAAAA
327148 TTAT
1 TTAT
327152 GAAAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 3 0.18
14 14 0.82
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATCTTTAAAAAAA
Found at i:331856 original size:21 final size:21
Alignment explanation
Indices: 331830--331908 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
331820 GGTTCTACGA
331830 GGTCCTTCGGGACATATATGT
1 GGTCCTTCGGGACATATATGT
* * *
331851 GGTCCTTCGGGACAATTCTACGA
1 GGTCCTTCGGGAC-A-TATATGT
*
331874 GGTCCTTTGGGACATATATGT
1 GGTCCTTCGGGACATATATGT
* * *
331895 TGTCTTTCGTGACA
1 GGTCCTTCGGGACA
331909 ATTCTATATG
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 27 0.60
22 2 0.04
23 16 0.36
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (21 bp):
GGTCCTTCGGGACATATATGT
Found at i:331885 original size:23 final size:23
Alignment explanation
Indices: 331822--331887 Score: 82
Period size: 21 Copynumber: 3.0 Consensus size: 23
331812 GAGTCGAGGG
331822 TTCTACGAGGTCCTTCGGGAC-A
1 TTCTACGAGGTCCTTCGGGACAA
* * *
331844 -TATATGTGGTCCTTCGGGACAA
1 TTCTACGAGGTCCTTCGGGACAA
*
331866 TTCTACGAGGTCCTTTGGGACA
1 TTCTACGAGGTCCTTCGGGACA
331888 TATATGTTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
21 17 0.49
22 1 0.03
23 17 0.49
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (23 bp):
TTCTACGAGGTCCTTCGGGACAA
Found at i:331886 original size:44 final size:44
Alignment explanation
Indices: 331822--331914 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
331812 GAGTCGAGGG
331822 TTCTACGAGGTCCTTCGGGACATATATGTGGTCCTTCGGGACAA
1 TTCTACGAGGTCCTTCGGGACATATATGTGGTCCTTCGGGACAA
* * * *
331866 TTCTACGAGGTCCTTTGGGACATATATGTTGTCTTTCGTGACAA
1 TTCTACGAGGTCCTTCGGGACATATATGTGGTCCTTCGGGACAA
331910 TTCTA
1 TTCTA
331915 TATGACACTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (44 bp):
TTCTACGAGGTCCTTCGGGACATATATGTGGTCCTTCGGGACAA
Found at i:333710 original size:23 final size:23
Alignment explanation
Indices: 333678--333722 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
333668 GAGTCGAGGG
*
333678 TTCTATGAGGTCCT-TCGGGACAA
1 TTCTACGAGGTCCTAT-GGGACAA
333701 TTCTACGAGGTCCTATGGGACA
1 TTCTACGAGGTCCTATGGGACA
333723 TATATGTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (23 bp):
TTCTACGAGGTCCTATGGGACAA
Found at i:342708 original size:4 final size:4
Alignment explanation
Indices: 342699--342755 Score: 100
Period size: 4 Copynumber: 14.8 Consensus size: 4
342689 TATTATAATT
342699 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TT- TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
342745 TTTA TTTA TTT
1 TTTA TTTA TTT
342756 TATTATTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 4 0.08
4 47 0.92
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:342761 original size:8 final size:8
Alignment explanation
Indices: 342679--342780 Score: 56
Period size: 8 Copynumber: 12.4 Consensus size: 8
342669 TTTTTTATCC
342679 ATTTTATT
1 ATTTTATT
342687 ATTATTA-T
1 ATT-TTATT
*
342695 AATTT-TT
1 ATTTTATT
342702 A-TTTATT
1 ATTTTATT
342709 -TATTTATT
1 AT-TTTATT
342717 -TATTTATT
1 AT-TTTATT
342725 -TATTTATTT
1 AT-TTTA-TT
342734 ATTTTTATT
1 A-TTTTATT
342743 -TATTTATTT
1 AT-TTTA-TT
342752 ATTTTATT
1 ATTTTATT
342760 ATTTTTATT
1 A-TTTTATT
342769 ATTATTATT
1 ATT-TTATT
342778 ATT
1 ATT
342781 ATATAATTAC
Statistics
Matches: 80, Mismatches: 1, Indels: 25
0.75 0.01 0.24
Matches are distributed among these distances:
6 3 0.04
7 7 0.09
8 35 0.44
9 29 0.36
10 5 0.06
11 1 0.01
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
ATTTTATT
Found at i:342837 original size:21 final size:21
Alignment explanation
Indices: 342812--342859 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
342802 GCCCAATAGT
342812 AGACCCAGAAGCCCATTTACA
1 AGACCCAGAAGCCCATTTACA
* *
342833 AGACCCGGAGGCCCATTTACA
1 AGACCCAGAAGCCCATTTACA
342854 A-ACCCA
1 AGACCCA
342860 ACCCAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.35, C:0.35, G:0.17, T:0.12
Consensus pattern (21 bp):
AGACCCAGAAGCCCATTTACA
Found at i:348859 original size:40 final size:40
Alignment explanation
Indices: 348815--348890 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
348805 CATGTGGGGT
*
348815 ATTTTGAAAGCTCATATC-ATCAAAAAGAAAATATTGAAGC
1 ATTTTGAAAGCTCACATCTA-CAAAAAGAAAATATTGAAGC
* * *
348855 ATTTTGAAGGCTCACATCTACAAGAAGCAAATATTG
1 ATTTTGAAAGCTCACATCTACAAAAAGAAAATATTG
348891 GGGCATACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.97
41 1 0.03
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (40 bp):
ATTTTGAAAGCTCACATCTACAAAAAGAAAATATTGAAGC
Found at i:350336 original size:123 final size:123
Alignment explanation
Indices: 350033--350610 Score: 732
Period size: 123 Copynumber: 4.7 Consensus size: 123
350023 GAGGGATCAA
* * * * *
350033 CATTGCCAGAAAGAGTTAGTAATAAGAAGAACTCATATG-AGAAGGAAGAAGAAGTTCATAATAT
1 CATTTCCAGAAAGAGTTCGTAATAAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAGTCT
* * ** *
350097 GAAGAACTTATTCCACCTTTTGCTCGACTCTATCGCAGAAGGAG-TAGAATAGCATCAA-
65 GAAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAGCA-AAAC
* *
350155 CACTTCCAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTCTG
1 CATTTCCAGAAAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTCTG
*
350220 AAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAACAAAAC
66 AAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAGCAAAAC
* * *
350278 CATTTCCAGACAGAGTTCGTAATAAGAAGAACTTC-TCAGAAGAGGAAGAAGTAGTTCATAGTCT
1 CATTTCCAGAAAGAGTTCGTAATAAGAAGAAC-TCATCTGAAGAGGAAGAAGAAGTTCATAGTCT
* * * ** * * **
350342 GAAGAACGTATTCAACCTTTTACTTGACTTTATCATAGAATGAGATAGAGCAGTATCAC
65 GAAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAGCAAAAC
* * * *
350401 CATTTCCATAAAGAGTTTGTAATAAGAAGAACTCGTCTGAAGAGGAAAAAGAAGTTCATAGTCTG
1 CATTTCCAGAAAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTCTG
* * *
350466 AAGAACTTATTCAACCTTTTGCTTGGCTCTATCGCAGAAGGAGATAAAGCAGCAGAAC
66 AAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAGCAAAAC
* * * *
350524 CATTGCCAAACAGAAGGAGTTCGTAATAAGAAGAACTCATCTGAAGAGAAAGAAGAAGTTCATAA
1 CATT-TC---CAGAAAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAG
*
350589 TCTGAAGAACTTGTTCAACCTT
62 TCTGAAGAACTTATTCAACCTT
350611 AGATCGATTC
Statistics
Matches: 393, Mismatches: 54, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
122 100 0.25
123 221 0.56
124 3 0.01
127 69 0.18
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (123 bp):
CATTTCCAGAAAGAGTTCGTAATAAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAGTCTG
AAGAACTTATTCAACCTTTTGCTTGACTCTATCGCAGAAGGAGATAGAGCAGCAAAAC
Found at i:350784 original size:3 final size:3
Alignment explanation
Indices: 350776--350840 Score: 78
Period size: 3 Copynumber: 20.7 Consensus size: 3
350766 TTTGTCTTTA
*
350776 ATT ATT ATT ATT ATT ATTT ATTT ATTT ATT -TT ATTT ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT A-TT A-TT A-TT ATT ATT A-TT ATT ATT ATT ATT
350824 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
350841 ATAATTACAA
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
2 2 0.04
3 41 0.72
4 14 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:360081 original size:22 final size:22
Alignment explanation
Indices: 360051--360092 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
360041 TCAGCTGTTA
* *
360051 TAACTCCTGAAATTATATCATG
1 TAACCCCTGAAATTAAATCATG
*
360073 TAACCCCTGTAATTAAATCA
1 TAACCCCTGAAATTAAATCA
360093 AATAACTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (22 bp):
TAACCCCTGAAATTAAATCATG
Found at i:360098 original size:22 final size:22
Alignment explanation
Indices: 360050--360098 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
360040 TTCAGCTGTT
* * *
360050 ATAACTCCTGAAATTATATCAT
1 ATAACCCCTGAAATTAAATCAA
* *
360072 GTAACCCCTGTAATTAAATCAA
1 ATAACCCCTGAAATTAAATCAA
360094 ATAAC
1 ATAAC
360099 TCATGTAACT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (22 bp):
ATAACCCCTGAAATTAAATCAA
Found at i:361832 original size:20 final size:20
Alignment explanation
Indices: 361809--361977 Score: 142
Period size: 20 Copynumber: 8.3 Consensus size: 20
361799 GTTTCTAGAT
*
361809 TCGCAACGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* * * **
361829 TCGCATTGCGATTTTCAAAA
1 TCGCAATGCGATTCTGACTA
**
361849 TTCGCGTTGCGATTTTCTGACTA
1 -TCGCAATGCGA--TTCTGACTA
* * *
361872 TCGCAATGCGAATATGTA-AA
1 TCGCAATGCGATTCTG-ACTA
*
361892 TCGCAATGCGATTATGACTA
1 TCGCAATGCGATTCTGACTA
361912 TCGCAATGCGATTCTGACTA
1 TCGCAATGCGATTCTGACTA
* * *
361932 TCGCAACGAGATTTTGACTA
1 TCGCAATGCGATTCTGACTA
* *
361952 TCGCAACGCGATTCTGACTG
1 TCGCAATGCGATTCTGACTA
361972 TCGCAA
1 TCGCAA
361978 CACTGAATTT
Statistics
Matches: 119, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
19 1 0.01
20 93 0.78
21 11 0.09
22 9 0.08
23 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (20 bp):
TCGCAATGCGATTCTGACTA
Found at i:363069 original size:14 final size:14
Alignment explanation
Indices: 363040--363076 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
363030 AGAAAAATAA
363040 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
363055 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
363069 GAAGAAAA
1 GAAGAAAA
363077 TGCAACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:365450 original size:140 final size:140
Alignment explanation
Indices: 365194--365463 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
365184 AAACGTTGTA
365194 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
365259 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGGGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCACAACGCGAATTTGACTAT
365324 TATGTGTATT
131 TATGTGTATT
*
365334 TTATGTGTAAAGTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
365399 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCACAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCACAACGCGAATTTGACTAT
365464 CGTAACACGA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCACAACGCGAATTTGACTAT
TATGTGTATT
Found at i:365459 original size:20 final size:20
Alignment explanation
Indices: 365434--365678 Score: 226
Period size: 20 Copynumber: 12.8 Consensus size: 20
365424 TTACACATTC
* *
365434 ATTTGAATATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
365454 ATTTGACTATCGTAACACGA
1 ATTTGACTATCGCAACGCGA
365474 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
365494 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* * *
365513 A----A-AATTGCAACGCAA
1 ATTTGACTATCGCAACGCGA
*
365528 ATTTGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
* *
365548 ATATGACTATCGCAATGC-A
1 ATTTGACTATCGCAACGCGA
*
365567 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
365582 ATTTGTCTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
365602 ATTTGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* *
365622 ATTTAATTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
365642 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
365662 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
365679 AGAAAATCGC
Statistics
Matches: 182, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
14 17 0.09
15 6 0.03
19 5 0.03
20 154 0.85
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:365559 original size:54 final size:55
Alignment explanation
Indices: 365473--365727 Score: 261
Period size: 54 Copynumber: 4.6 Consensus size: 55
365463 TCGTAACACG
* *
365473 AATTTGACTATCGCAACGCGAATTTGATTATCGCAACT-CAAAAATTGCAACGCA
1 AATTTGACTATCGCAACGCGAATTTGACTATCGCAACTGCAAAAATCGCAACGCA
* * *
365527 AATTTGACTATCGCAACACGAATATGACTATCGCAA-TGCAAAAATCGCAACGCG
1 AATTTGACTATCGCAACGCGAATTTGACTATCGCAACTGCAAAAATCGCAACGCA
* *
365581 AATTTGTCTATCGCAACGCGAATTTGACTATCGCAACGTG-AATTTAATTATCGCAACGCG
1 AATTTGACTATCGCAACGCGAATTTGACTATCGCAAC-TGCAA---AA--ATCGCAACGCA
* * * * *
365641 AATTTGATTATCGCAACGGGTATTTGACTATCGCAAC-G-AGAAAATCGCAAAGCG
1 AATTTGACTATCGCAACGCGAATTTGACTATCGCAACTGCA-AAAATCGCAACGCA
* * * *
365695 TATTAGACTATCGCAACGC-AAATTGACTTTCGC
1 AATTTGACTATCGCAACGCGAATTTGACTATCGC
365728 GTTGCGATTT
Statistics
Matches: 172, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.07
54 105 0.61
55 2 0.01
56 4 0.02
58 4 0.02
59 1 0.01
60 44 0.26
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (55 bp):
AATTTGACTATCGCAACGCGAATTTGACTATCGCAACTGCAAAAATCGCAACGCA
Found at i:365746 original size:20 final size:20
Alignment explanation
Indices: 365717--365774 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
365707 GCAACGCAAA
365717 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCGTTGCGATT
* * *
365737 TTGTCTTTCGCATTACGATT
1 TTGACTTTCGCGTTGCGATT
* *
365757 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCGTTGCGA
365775 AAGTGTACCT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.14, C:0.17, G:0.24, T:0.45
Consensus pattern (20 bp):
TTGACTTTCGCGTTGCGATT
Found at i:365933 original size:14 final size:14
Alignment explanation
Indices: 365873--365934 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
365863 CACAAATAAG
*
365873 AATTATTTACACATC
1 AATT-TTTACAAATC
**
365888 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
365903 AACTTTTACAAATC
1 AATTTTTACAAATC
*
365917 AATTTTTATAAATC
1 AATTTTTACAAATC
365931 AATT
1 AATT
365935 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 12 0.32
16 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:367933 original size:19 final size:20
Alignment explanation
Indices: 367899--367953 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
367889 TCGCAATACG
367899 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
367919 AATGACTAT-GCAACGCGAA
1 AATGACTATCGCAACGCGAA
** *
367938 TTTGACAATCGCAACG
1 AATGACTATCGCAACG
367954 AGAGAATCGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (20 bp):
AATGACTATCGCAACGCGAA
Found at i:369960 original size:20 final size:20
Alignment explanation
Indices: 369937--370043 Score: 119
Period size: 20 Copynumber: 5.5 Consensus size: 20
369927 TCTGAAACTT
*
369937 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
*
369957 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
** **
369977 ACTATCGCAACGCGAATTTG
1 AAAATCGCAACGCGAAAATG
**
369997 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACGCGAAAATG
*
370016 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACGCGAAAATG
370035 AAAATCGCA
1 AAAATCGCA
370044 TTGCGATTCT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
19 24 0.32
20 52 0.68
ACGTcount: A:0.46, C:0.23, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACGCGAAAATG
Found at i:370456 original size:22 final size:22
Alignment explanation
Indices: 370429--370471 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
370419 GAGATAGACG
370429 GATTTCGTCGGAGATGGGGACT
1 GATTTCGTCGGAGATGGGGACT
370451 GATTTCGTCGGAGATGGGGAC
1 GATTTCGTCGGAGATGGGGAC
370472 GGATGTCGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.42, T:0.26
Consensus pattern (22 bp):
GATTTCGTCGGAGATGGGGACT
Found at i:370679 original size:20 final size:20
Alignment explanation
Indices: 370654--370760 Score: 160
Period size: 20 Copynumber: 5.3 Consensus size: 20
370644 GAAAATTGCA
*
370654 TTGCGATAGTCAGCATCGCG
1 TTGCGATAGTCAGAATCGCG
* *
370674 TTGCGACAGTCAGAATCACG
1 TTGCGATAGTCAGAATCGCG
*
370694 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
370714 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
* *
370734 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCG
370754 TTGCGAT
1 TTGCGAT
370761 TTACATATTC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:370778 original size:40 final size:40
Alignment explanation
Indices: 370651--370784 Score: 144
Period size: 40 Copynumber: 3.4 Consensus size: 40
370641 TTTGAAAATT
* * *
370651 GCATTGCGATAGTCAGCATCGCGTTGCGACAGTCAGAATC
1 GCATTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATC
* * * *
370691 ACGTTGCGATAGTCAGAATCTCGTTGCGATAGTCAGAATC
1 GCATTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATC
* * * * *
370731 GCGTTGCGATAGTCATAATCGCATTGCGAT-TTACATATTC
1 GCATTGCGATAGTCAGAATCGCATTGCGATAGT-CAGAATC
370771 GCATTGCGATAGTC
1 GCATTGCGATAGTC
370785 GGAAAATCGC
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 79 0.99
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
GCATTGCGATAGTCAGAATCGCATTGCGATAGTCAGAATC
Found at i:370778 original size:60 final size:60
Alignment explanation
Indices: 370651--370784 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
370641 TTTGAAAATT
* *
370651 GCATTGCGATAGTCAGCATCGCGTTGCGACAGTCAGAATCACGTTGCGATAGTCAGAATC
1 GCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCACATTGCGATAGTCAGAATC
* * * * * * * *
370711 TCGTTGCGATAGTCAGAATCGCGTTGCGATAGTCATAATCGCATTGCGAT-TTACATATTC
1 GCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCACATTGCGATAGT-CAGAATC
370771 GCATTGCGATAGTC
1 GCATTGCGATAGTC
370785 GGAAAATCGC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 1 0.02
60 60 0.98
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (60 bp):
GCATTGCGATAGTCAGAATCGCGTTGCGACAGTCAGAATCACATTGCGATAGTCAGAATC
Found at i:370813 original size:21 final size:21
Alignment explanation
Indices: 370787--370843 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
370777 CGATAGTCGG
370787 AAAATCGCAACGCGAATTTGA
1 AAAATCGCAACGCGAATTTGA
*
370808 AAAATCG-AATCGCGAATTTGG
1 AAAATCGCAA-CGCGAATTTGA
*
370829 AAAATCGCAATGCGA
1 AAAATCGCAACGCGA
370844 TAGTCAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (21 bp):
AAAATCGCAACGCGAATTTGA
Found at i:375553 original size:22 final size:22
Alignment explanation
Indices: 375528--375586 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
375518 GGACCATTTG
*
375528 AATTCATTTGAAGATAATCGAA
1 AATTTATTTGAAGATAATCGAA
*
375550 AATTTATTTGAAGATGATCGAA
1 AATTTATTTGAAGATAATCGAA
*
375572 AATTTATTTGGAGAT
1 AATTTATTTGAAGAT
375587 TTTGTGCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (22 bp):
AATTTATTTGAAGATAATCGAA
Found at i:375795 original size:23 final size:23
Alignment explanation
Indices: 375761--375815 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
375751 AAACCAATTT
*
375761 AATTACAAGCCCAAGTAA-GACCC
1 AATTACAAGCCC-AGAAATGACCC
* *
375784 AGTTACAGGCCCAGAAATGACCC
1 AATTACAAGCCCAGAAATGACCC
375807 AATTACAAG
1 AATTACAAG
375816 ATCCGTTTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.15
Consensus pattern (23 bp):
AATTACAAGCCCAGAAATGACCC
Found at i:382066 original size:20 final size:20
Alignment explanation
Indices: 382021--382066 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
382011 ATGAAATGAC
*
382021 TTAACCATTTGATTAAAAAT
1 TTAACCATTTGATTAAAAAG
* *
382041 TATAACCTTTTGATTAAAAGG
1 T-TAACCATTTGATTAAAAAG
382062 TTAAC
1 TTAAC
382067 ATGAAAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (20 bp):
TTAACCATTTGATTAAAAAG
Found at i:386703 original size:16 final size:16
Alignment explanation
Indices: 386682--387193 Score: 252
Period size: 16 Copynumber: 33.8 Consensus size: 16
386672 TTTTCCAACA
386682 AGAGAGAGAGA-GGA-
1 AGAGAGAGAGAGGGAG
*
386696 AGAGAGAGAGATGGA-
1 AGAGAGAGAGAGGGAG
* * *
386711 A-AGATAGAG-GAGAA
1 AGAGAGAGAGAGGGAG
*
386725 AGAGAGGGAGAGGG-G
1 AGAGAGAGAGAGGGAG
386740 A-AGAGAG-G-GGGAG
1 AGAGAGAGAGAGGGAG
*
386753 -G-G-G-GAGGGGGAG
1 AGAGAGAGAGAGGGAG
* * *
386765 GGAGGGGGAG-GGGAG
1 AGAGAGAGAGAGGGAG
* * * *
386780 GGAGGGGGAGGGGGAG
1 AGAGAGAGAGAGGGAG
*
386796 AGAGAGAG-GGGGGAG
1 AGAGAGAGAGAGGGAG
*
386811 AGAGAGAGAGAGGGGG
1 AGAGAGAGAGAGGGAG
* *
386827 GGAGAGAGAGAGGGGG
1 AGAGAGAGAGAGGGAG
386843 AGAGAGAAGAGAGGGAG
1 AGAGAG-AGAGAGGGAG
386860 AG-G-G-GAGAGGAGAG
1 AGAGAGAGAGAGG-GAG
* *
386874 AGAGGGGGAGAGGGAG
1 AGAGAGAGAGAGGGAG
*
386890 AGAGAGAGGGAGGGAG
1 AGAGAGAGAGAGGGAG
386906 -G-GAG-G-GAGGGAG
1 AGAGAGAGAGAGGGAG
*
386918 AGAGAGAGGGAGGGAG
1 AGAGAGAGAGAGGGAG
* *
386934 AGAGGGAGGGAGGGAG
1 AGAGAGAGAGAGGGAG
* *
386950 GGAGGGGAGAGAGGGAG
1 AGA-GAGAGAGAGGGAG
*
386967 AGAG-G-GAG-GGGGG
1 AGAGAGAGAGAGGGAG
*
386980 AGGGAGAGAGAGGGAG
1 AGAGAGAGAGAGGGAG
*
386996 AGAG-G-GAG-GGAAG
1 AGAGAGAGAGAGGGAG
* *
387009 AGGGAGGGAGAGGG-G
1 AGAGAGAGAGAGGGAG
*
387024 AGAG-G-GGGAGGGAGG
1 AGAGAGAGAGAGGGA-G
* * *
387039 AGGGGGAGGGAGGGAG
1 AGAGAGAGAGAGGGAG
* * *
387055 GGAGGGGGAGAGGGAG
1 AGAGAGAGAGAGGGAG
387071 AGAGGAGAGGGAGAGGG-G
1 AGA-GAGA--GAGAGGGAG
* *
387089 AG-GAGGGGGAGGGAG
1 AGAGAGAGAGAGGGAG
* *
387104 AG-GGGAGGAGAGGGGG
1 AGAGAGA-GAGAGGGAG
387120 AGAG-GAGAG-GGGAG
1 AGAGAGAGAGAGGGAG
* *
387134 AGAGGGAGAGGGGGAG
1 AGAGAGAGAGAGGGAG
* * * *
387150 GGGGAGGGGGATGGG-G
1 AGAGAGAGAGA-GGGAG
*
387166 AGAGAGAGAGAGAGAG
1 AGAGAGAGAGAGGGAG
387182 AGAGAGAGAGAG
1 AGAGAGAGAGAG
387194 AATAAATAAA
Statistics
Matches: 396, Mismatches: 58, Indels: 86
0.73 0.11 0.16
Matches are distributed among these distances:
10 1 0.00
11 2 0.01
12 16 0.04
13 33 0.08
14 59 0.15
15 77 0.19
16 153 0.39
17 45 0.11
18 3 0.01
19 7 0.02
ACGTcount: A:0.33, C:0.00, G:0.66, T:0.01
Consensus pattern (16 bp):
AGAGAGAGAGAGGGAG
Found at i:386737 original size:6 final size:6
Alignment explanation
Indices: 386726--387193 Score: 279
Period size: 6 Copynumber: 76.8 Consensus size: 6
386716 AGAGGAGAAA
* * * *
386726 GAGAGG GAGAGG G-GA-A GAGAGG GGGAGG GGGAGG GGGAGG GAG-GG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
* * * * * *
386771 G-GAGG G-GAGG GAGGGG GAGGGG GAGAGA GAGAGGG GGGAGA GAGAGA
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGA-GG GAGAGG GAGAGG
* * * *
386818 GAGAGG G-G-GG GAGAGA GAGAGG GGGAGA GAGA-A GAGAGG GAGAGG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
* * *
386863 G-GAGAG GAGAGA GAGGGG GAGAGG GAGAGA GAGAGG GAGGGAGG GAGGGAGG
1 GAGAG-G GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GA--GAGG GA--GAGG
* * *
386915 GAGAGA GAGAGG GAG-GG AGAGAGG GAG-GG AGGGAGG GAGGGG AGAGAGG
1 GAGAGG GAGAGG GAGAGG -GAGAGG GAGAGG -GAGAGG GAGAGG -GAGAGG
*
386964 GAGAGAG G-GAGGG GGGAGG GAGA-- GAGAGG GAGAGAG G-GAGG GA-AGAG
1 GAGAG-G GAGA-GG GAGAGG GAGAGG GAGAGG GAGAG-G GAGAGG GAGAG-G
* * *
387011 G-GAGG GAGAGGG GAGAGG GGGAGG GAGGAGG GGGAGG GAGGGAGG GAGGGG
1 GAGAGG GAGA-GG GAGAGG GAGAGG GA-GAGG GAGAGG GA--GAGG GAGAGG
*
387062 GAGAGG GAGAGAG GAGAGG GAGAGGG GAGGAGG GGGAGG GAGAGG G-GAGG
1 GAGAGG GAGAG-G GAGAGG GAGA-GG GA-GAGG GAGAGG GAGAGG GAGAGG
* * * * *
387112 AGAGGGG GAGAGG AGAGGGG AGAGAGG GAGAGG GGGAGG GGGAGG GGGATGGG
1 -GAGAGG GAGAGG -GAGAGG -GAGAGG GAGAGG GAGAGG GAGAGG GAGA--GG
* * * *
387165 GAGAGA GAGAGA GAGAGA GAGAGA GAGAG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAG
387194 AATAAATAAA
Statistics
Matches: 377, Mismatches: 46, Indels: 78
0.75 0.09 0.16
Matches are distributed among these distances:
4 9 0.02
5 39 0.10
6 241 0.64
7 61 0.16
8 27 0.07
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:386769 original size:4 final size:4
Alignment explanation
Indices: 386760--387151 Score: 231
Period size: 4 Copynumber: 96.8 Consensus size: 4
386750 GAGGGGGAGG
* * *
386760 GGGA GGGA -GG- GGGA GGGGA GGGA GGG- GGAGG GGGA GAGA GAGA GGG-
1 GGGA GGGA GGGA GGGA -GGGA GGGA GGGA GG-GA GGGA GGGA GGGA GGGA
* * * * * * * *
386806 GGGA GAGA GAGA GAGA GGGG GGGA GAGA GAGA GGG- GGAGA GAGAA GAGA
1 GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GG-GA G-GGA GGGA
* * *
386855 GGGA GAGG- GGAGA GGAGA GAGA GGG- GGAGA GGGA GAGA GAGA GGGA
1 GGGA G-GGA GG-GA GG-GA GGGA GGGA GG-GA GGGA GGGA GGGA GGGA
* * *
386901 GGGA GGGA GGGA GGGA GAGA GAGA GGGA GGGA GAGA GGGA GGGA GGGA
1 GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA
* * *
386949 GGGA GGGGA GAGA GGGA GAGA GGGA GGG- GGGA GGGA GAGAGA GGGA GAGA
1 GGGA -GGGA GGGA GGGA GGGA GGGA GGGA GGGA GGGA G-G-GA GGGA GGGA
* * *
386999 GGGA GGGA -AGA GGGA GGGA GAG- GGGA GAGG- GGGA GGGA GGAGG GGGA
1 GGGA GGGA GGGA GGGA GGGA GGGA GGGA G-GGA GGGA GGGA GG-GA GGGA
* * *
387046 GGGA GGGA GGGA GGG- GGAGA GGGA GAGA GGAGA GGGA GAG- GGGA GGAGG
1 GGGA GGGA GGGA GGGA GG-GA GGGA GGGA GG-GA GGGA GGGA GGGA GG-GA
* *
387095 GGGA GGGA GAG- GGGA GGAGA GGG- GGAGA GGAGA GGGGA GAGA GGGA
1 GGGA GGGA GGGA GGGA GG-GA GGGA GG-GA GG-GA -GGGA GGGA GGGA
387141 GAGG- GGGA GGG
1 G-GGA GGGA GGG
387152 GGAGGGGGAT
Statistics
Matches: 310, Mismatches: 43, Indels: 70
0.73 0.10 0.17
Matches are distributed among these distances:
3 33 0.11
4 219 0.71
5 52 0.17
6 6 0.02
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (4 bp):
GGGA
Found at i:386800 original size:2 final size:2
Alignment explanation
Indices: 386793--387194 Score: 109
Period size: 2 Copynumber: 209.0 Consensus size: 2
386783 GGGGGAGGGG
* * * * *
386793 GA GA GA GA GA G- GG GG GA GA GA GA GA GA GA GG GG GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
386834 GA GA GG GG GA GA GA GA -A GA GA GG GA GA G- GG GA GA G- GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * *
386873 GA GA GG GG GA GA GG GA GA GA GA GA GG GA GG GA GG GA GG GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * *
386915 GA GA GA GA GA GG GA GG GA GA GA GG GA GG GA GG GA GG GA G- GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
386956 GA GA GA GG GA GA GA GG GA G- GG GG GA GG GA GA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * *
386997 GA GG GA GG GA -A GA GG GA GG GA GA G- GG GA GA GG GG GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * *
387037 G- GA GG GG GA GG GA GG GA GG GA GG GG GA GA GG GA GA GA G- GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
387077 GA GG GA GA G- GG GA G- GA GG GG GA GG GA GA G- GG GA G- GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * *
387115 GG GG GA GA G- GA GA G- GG GA GA GA GG GA GA GG GG GA GG GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
387155 GG GG GA TG- GG GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
387195 ATAAATAAAA
Statistics
Matches: 293, Mismatches: 89, Indels: 36
0.70 0.21 0.09
Matches are distributed among these distances:
1 17 0.06
2 275 0.94
3 1 0.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (2 bp):
GA
Found at i:394371 original size:36 final size:37
Alignment explanation
Indices: 394256--394364 Score: 179
Period size: 35 Copynumber: 3.0 Consensus size: 37
394246 TGGCAACCAA
394256 CTTTGAAAAAATGGTTTTT-AAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
394293 CTTTG-AAAATGG-TTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
*
394328 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
394365 GTTGAAATAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
34 4 0.06
35 30 0.44
36 7 0.10
37 27 0.40
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (37 bp):
CTTTGAAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
Found at i:401340 original size:3 final size:3
Alignment explanation
Indices: 401325--401397 Score: 89
Period size: 3 Copynumber: 24.7 Consensus size: 3
401315 TCTACAAAAA
* *
401325 TAT TAT TA- AAT TAT TAT TAT TTT TAT T-T ATAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
401368 ATAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
401398 CACCTATTAC
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
2 4 0.07
3 53 0.87
4 4 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:402948 original size:30 final size:29
Alignment explanation
Indices: 402894--403008 Score: 113
Period size: 30 Copynumber: 3.9 Consensus size: 29
402884 TGTTTTGGTT
*
402894 CCTTAAGTTTCTATTTTTCTATTTTAGTC
1 CCTTAAATTTCTATTTTTCTATTTTAGTC
* *
402923 CCTTAAATGTCTATTTTTACTATTTTACTC
1 CCTTAAATTTCTATTTTT-CTATTTTAGTC
* * *
402953 CTTTAAATTTATTTTGTTTGCTATTTTAGTC
1 CCTTAAATTTCTATT-TTT-CTATTTTAGTC
*** *
402984 CCTTTGGTTTCTTTTTTTCTATTTT
1 CCTTAAATTTCTATTTTTCTATTTT
403009 GGTCTTTTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
29 23 0.33
30 24 0.34
31 23 0.33
ACGTcount: A:0.17, C:0.16, G:0.07, T:0.61
Consensus pattern (29 bp):
CCTTAAATTTCTATTTTTCTATTTTAGTC
Found at i:405022 original size:13 final size:13
Alignment explanation
Indices: 405000--405034 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
404990 AAATTTGAGA
405000 AGCT-GAAGAAAG
1 AGCTGGAAGAAAG
405012 AGCTGGAAGAAAG
1 AGCTGGAAGAAAG
405025 AGCTGGAAGA
1 AGCTGGAAGA
405035 GAGTTTGCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.46, C:0.09, G:0.37, T:0.09
Consensus pattern (13 bp):
AGCTGGAAGAAAG
Found at i:408052 original size:30 final size:29
Alignment explanation
Indices: 407982--408204 Score: 155
Period size: 30 Copynumber: 7.5 Consensus size: 29
407972 GTTTATTGTA
* * *
407982 TTTGTGTTTTGGTCCCCTAAGTTTCTATT
1 TTTGTATTTTAGTCCCTTAAGTTTCTATT
* *
408011 TTTCTATTTTAGTCCCTTAAGTTTTTATT
1 TTTGTATTTTAGTCCCTTAAGTTTCTATT
* * *
408040 TTTGTGATTTTAGTCCTTTAAATATT-TGTT
1 TTTGT-ATTTTAGTCCCTTAAGT-TTCTATT
* * * * * **
408070 TTTACTATTTTAGTCCTTTAAATATATGGT
1 TTT-GTATTTTAGTCCCTTAAGTTTCTATT
* * *
408100 TTTGCTATTTTAATCGCTTAAGTTTCAATT
1 TTTG-TATTTTAGTCCCTTAAGTTTCTATT
* *
408130 TTTGCTATTTTAATCCTTTTAA-TTTCTATT
1 TTTG-TATTTTAGTCC-CTTAAGTTTCTATT
*
408160 TTTGCTATTTTAGTCCCTTAGGTTTCT-TT
1 TTTG-TATTTTAGTCCCTTAAGTTTCTATT
*
408189 TTTGCTATTTTGGTCC
1 TTTG-TATTTTAGTCC
408205 TTTTAAATAG
Statistics
Matches: 158, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
29 49 0.31
30 102 0.65
31 7 0.04
ACGTcount: A:0.17, C:0.13, G:0.11, T:0.58
Consensus pattern (29 bp):
TTTGTATTTTAGTCCCTTAAGTTTCTATT
Found at i:408131 original size:90 final size:90
Alignment explanation
Indices: 408009--408175 Score: 221
Period size: 90 Copynumber: 1.9 Consensus size: 90
407999 TAAGTTTCTA
* * ** * *
408009 TTTTTCTATTTTAGTCCCTTAAGTTTTTATTTTTG-TGATTTTAGTCCTTTAAATATT-TGTTTT
1 TTTTGCTATTTTAATCCCTTAAGTTTCAATTTTTGCT-ATTTTAATCCTTTAAAT-TTCTATTTT
408072 TACTATTTTAGTCCTTTAAATATATGG
64 TACTATTTTAGTCCTTTAAATATATGG
* * *
408099 TTTTGCTATTTTAATCGCTTAAGTTTCAATTTTTGCTATTTTAATCCTTTTAATTTCTATTTTTG
1 TTTTGCTATTTTAATCCCTTAAGTTTCAATTTTTGCTATTTTAATCCTTTAAATTTCTATTTTTA
408164 CTATTTTAGTCC
66 CTATTTTAGTCC
408176 CTTAGGTTTC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.03
90 63 0.95
91 1 0.02
ACGTcount: A:0.20, C:0.12, G:0.09, T:0.59
Consensus pattern (90 bp):
TTTTGCTATTTTAATCCCTTAAGTTTCAATTTTTGCTATTTTAATCCTTTAAATTTCTATTTTTA
CTATTTTAGTCCTTTAAATATATGG
Found at i:408132 original size:60 final size:59
Alignment explanation
Indices: 407994--408213 Score: 174
Period size: 60 Copynumber: 3.7 Consensus size: 59
407984 TGTGTTTTGG
* * * * * * *
407994 TCCCCTAAGTTTCTATTTTT-CTATTTTAGTCCCTTAAGTTTTTATTTTTG-TGATTTTAG
1 TCCCTTAAGTTTC-ATTTTTGCTATTTTAGTCCTTTAAATATATAGTTTTGCT-ATTTTAA
* * ** * *
408053 TCCTTTAAATATTTGTTTTTACTATTTTAGTCCTTTAAATATATGGTTTTGCTATTTTAA
1 TCCCTTAAGT-TTCATTTTTGCTATTTTAGTCCTTTAAATATATAGTTTTGCTATTTTAA
* * * * * * *
408113 TCGCTTAAGTTTCAATTTTTGCTATTTTAATCCTTTTAATTTCTATTTTTGCTATTTTAG
1 TCCCTTAAGTTTC-ATTTTTGCTATTTTAGTCCTTTAAATATATAGTTTTGCTATTTTAA
* * *
408173 TCCCTTAGGTTTCTTTTTTGCTATTTTGGTCCTTTTAAATA
1 TCCCTTAAGTTTCATTTTTGCTATTTTAGTCC-TTTAAATA
408214 GAATATGATT
Statistics
Matches: 124, Mismatches: 32, Indels: 9
0.75 0.19 0.05
Matches are distributed among these distances:
59 30 0.24
60 93 0.75
61 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.57
Consensus pattern (59 bp):
TCCCTTAAGTTTCATTTTTGCTATTTTAGTCCTTTAAATATATAGTTTTGCTATTTTAA
Found at i:408494 original size:5 final size:5
Alignment explanation
Indices: 408484--408514 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
408474 GCTTTTGTAC
*
408484 TTTTA TTTTA TTTTG TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
408515 CTTTGCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:409421 original size:3 final size:3
Alignment explanation
Indices: 409413--409475 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
409403 GGGTTCTAAT
* *
409413 TTA TTA TTA AT- TTA ATA TTAA CTTA TTA TT- TTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A -TTA TTA TTA TTA -TTA TTA TTA TTA
*
409459 TTA TTA TCA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA
409476 ACAATATTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
2 5 0.10
3 36 0.75
4 5 0.10
5 2 0.04
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:409425 original size:11 final size:11
Alignment explanation
Indices: 409409--409464 Score: 62
Period size: 11 Copynumber: 5.2 Consensus size: 11
409399 GTCCGGGTTC
409409 TAATTTATTAT
1 TAATTTATTAT
*
409420 TAATTTAATAT
1 TAATTTATTAT
*
409431 TAACTTATTATT
1 TAATTTATTA-T
*
409443 TTATTTATTAT
1 TAATTTATTAT
409454 T-A-TTATTAT
1 TAATTTATTAT
409463 TA
1 TA
409465 TCATTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
9 8 0.21
10 1 0.03
11 20 0.53
12 9 0.24
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TAATTTATTAT
Found at i:411090 original size:4 final size:4
Alignment explanation
Indices: 411074--411152 Score: 113
Period size: 4 Copynumber: 19.8 Consensus size: 4
411064 TGTATGCATG
* * * * *
411074 TATA TATA CATA TATA TACA TACA TATA TATA CATA CATA TATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
411122 TATA TATA TATA TATA TATA TATA TATA TAT
1 TATA TATA TATA TATA TATA TATA TATA TAT
411153 TTAGTTTTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 69 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.44
Consensus pattern (4 bp):
TATA
Found at i:411150 original size:10 final size:10
Alignment explanation
Indices: 411074--411152 Score: 113
Period size: 10 Copynumber: 7.9 Consensus size: 10
411064 TGTATGCATG
*
411074 TATATATACA
1 TATATATATA
*
411084 TATATATACA
1 TATATATATA
*
411094 TACATATATA
1 TATATATATA
* *
411104 TACATACATA
1 TATATATATA
411114 TATATATATA
1 TATATATATA
411124 TATATATATA
1 TATATATATA
411134 TATATATATA
1 TATATATATA
411144 TATATATAT
1 TATATATAT
411153 TTAGTTTTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 64 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATATATA
Found at i:411152 original size:14 final size:14
Alignment explanation
Indices: 411074--411151 Score: 120
Period size: 14 Copynumber: 5.6 Consensus size: 14
411064 TGTATGCATG
411074 TATATATACATATA
1 TATATATACATATA
*
411088 TATACATACATATA
1 TATATATACATATA
*
411102 TATACATACATATA
1 TATATATACATATA
*
411116 TATATATATATATA
1 TATATATACATATA
*
411130 TATATATATATATA
1 TATATATACATATA
411144 TATATATA
1 TATATATA
411152 TTTAGTTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 61 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (14 bp):
TATATATACATATA
Found at i:413595 original size:43 final size:44
Alignment explanation
Indices: 413523--413613 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 44
413513 CATGTGTCAC
*
413523 AATTTAATTGAAAAAAATATTAAATTAAATTAAAATTAGGACCT
1 AATTTAATTGAAAAAAATATCAAATTAAATTAAAATTAGGACCT
413567 AATTTAATTGAAAAAAA-ATCAAATTAAATTAAAATTAGGACCT
1 AATTTAATTGAAAAAAATATCAAATTAAATTAAAATTAGGACCT
413610 AATT
1 AATT
413614 AAAAATGAAG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 29 0.63
44 17 0.37
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (44 bp):
AATTTAATTGAAAAAAATATCAAATTAAATTAAAATTAGGACCT
Found at i:415963 original size:106 final size:106
Alignment explanation
Indices: 415778--416000 Score: 428
Period size: 106 Copynumber: 2.1 Consensus size: 106
415768 GTCCACTCTC
*
415778 CAAGCTTTTTATACTATCAGCCAAGCCCTCAACTTCAATAGAGAACCTTCAACATTCAATGGTTT
1 CAAGCTTTTTATACTATCAGCCAAGCCCTCAACTTCAACAGAGAACCTTCAACATTCAATGGTTT
*
415843 TTTGTAGTTTCCATGGGTTAAACGTAGCCATGTCCTTCCTG
66 TTTGTAGTTTCCATGGGTTAAACGTAACCATGTCCTTCCTG
415884 CAAGCTTTTTATACTATCAGCCAAGCCCTCAACTTCAACAGAGAACCTTCAACATTCAATGGTTT
1 CAAGCTTTTTATACTATCAGCCAAGCCCTCAACTTCAACAGAGAACCTTCAACATTCAATGGTTT
415949 TTTGTAGTTTCCATGGGTTAAACGTAACCATGTCCTTCCTG
66 TTTGTAGTTTCCATGGGTTAAACGTAACCATGTCCTTCCTG
415990 CAAGCTTTTTA
1 CAAGCTTTTTA
416001 ATTCCAACAC
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 115 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (106 bp):
CAAGCTTTTTATACTATCAGCCAAGCCCTCAACTTCAACAGAGAACCTTCAACATTCAATGGTTT
TTTGTAGTTTCCATGGGTTAAACGTAACCATGTCCTTCCTG
Found at i:417891 original size:3 final size:3
Alignment explanation
Indices: 417885--417932 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
417875 AGTTTTTTTA
*
417885 ATT ATT ATTT ATC ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT AATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
417931 AT
1 AT
417933 GTTACATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.80
4 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:417917 original size:14 final size:15
Alignment explanation
Indices: 417885--417925 Score: 66
Period size: 14 Copynumber: 2.7 Consensus size: 15
417875 AGTTTTTTTA
417885 ATTATTATTTATCATT
1 ATTATTA-TTATCATT
417901 ATTATTATTAT-ATT
1 ATTATTATTATCATT
417915 ATTATTATTAT
1 ATTATTATTAT
417926 TAATTATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.56
15 4 0.16
16 7 0.28
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTATCATT
Found at i:422212 original size:65 final size:63
Alignment explanation
Indices: 422117--422258 Score: 180
Period size: 65 Copynumber: 2.2 Consensus size: 63
422107 CACATTGAAT
* *
422117 GTGCATCGATGCACTCTTTAAAGAAGAAACATCGAATGTAATTGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGTAATTGGTGCATCGATGCAT-AGGTA
* * * *
422180 GTGCATCGATGCATCCCTTTAAA-AATGAAAACATTGAAGGTAATTTGTGTATCGATGCATGGGT
1 GTGCATCGATGCA-CCCTTTAAAGAA-G-AAACATCGAAGGTAATTGGTGCATCGATGCATAGGT
422244 A
63 A
422245 GTGCATCGATGCAC
1 GTGCATCGATGCAC
422259 ATGTTAAAGA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
63 15 0.22
64 12 0.17
65 42 0.61
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGTAATTGGTGCATCGATGCATAGGTA
Found at i:426375 original size:65 final size:63
Alignment explanation
Indices: 426283--426421 Score: 165
Period size: 65 Copynumber: 2.2 Consensus size: 63
426273 ATTGAATGTA
* *
426283 CATCGATGCACTCTTTAAAGAAGAAACATCAAATGCAATTGGTGCATCGATGCATAAGG-AGTG
1 CATCGATGCACCCTTTAAAGAAGAAACATCAAAGGCAATTGGTGCATCGATGCAT-AGGTAGTG
* * * * *
426346 CATCGATGCATCCCTTTAAA-AATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGGGTAGT
1 CATCGATGCA-CCCTTTAAAGAA-G-AAACATCAAAGGCAATTGGTGCATCGATGCATAGGTAGT
426410 G
63 G
426411 CATCGATGCAC
1 CATCGATGCAC
426422 ATGTTAAAGA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
63 12 0.18
64 12 0.18
65 41 0.63
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (63 bp):
CATCGATGCACCCTTTAAAGAAGAAACATCAAAGGCAATTGGTGCATCGATGCATAGGTAGTG
Found at i:426457 original size:20 final size:20
Alignment explanation
Indices: 426429--426466 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
426419 CACATGTTAA
426429 AGAACGCATCGATGCACTAT
1 AGAACGCATCGATGCACTAT
*
426449 AGAATGCATCGATGCACT
1 AGAACGCATCGATGCACT
426467 TCAAGGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (20 bp):
AGAACGCATCGATGCACTAT
Found at i:430140 original size:5 final size:5
Alignment explanation
Indices: 430139--430206 Score: 68
Period size: 5 Copynumber: 13.0 Consensus size: 5
430129 AAGAGAAAAG
*
430139 AAGAA AAGAA AA-ACA AAGAA AA-AA AAGAAAA AAGAA AAGAA AAAAA
1 AAGAA AAGAA AAGA-A AAGAA AAGAA AAG--AA AAGAA AAGAA AAGAA
430185 AAGAA AAGATAA AAGAA AAGAA
1 AAGAA AAG--AA AAGAA AAGAA
430207 CAAAAAGATG
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
4 5 0.09
5 38 0.70
6 1 0.02
7 10 0.19
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.01
Consensus pattern (5 bp):
AAGAA
Found at i:430156 original size:10 final size:10
Alignment explanation
Indices: 430142--430203 Score: 72
Period size: 12 Copynumber: 5.9 Consensus size: 10
430132 AGAAAAGAAG
430142 AAAAGAAAAA
1 AAAAGAAAAA
*
430152 CAAAG-AAAA
1 AAAAGAAAAA
430161 AAAAGAAAAAA
1 AAAAG-AAAAA
430172 GAAAAGAAAAA
1 -AAAAGAAAAA
430183 AAAAGAAAAGA
1 AAAAGAAAA-A
430194 TAAAAGAAAA
1 -AAAAGAAAA
430204 GAACAAAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
9 8 0.18
10 13 0.29
11 10 0.22
12 14 0.31
ACGTcount: A:0.84, C:0.02, G:0.13, T:0.02
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:430157 original size:15 final size:15
Alignment explanation
Indices: 430128--430206 Score: 95
Period size: 15 Copynumber: 5.1 Consensus size: 15
430118 AGATCATATC
* *
430128 AAAGAGAAAAGAAGA
1 AAAGAAAAAAAAAGA
*
430143 AAAGAAAAACAAAGA
1 AAAGAAAAAAAAAGA
*
430158 AAAAAAAGAAAAAAGA
1 AAAGAAA-AAAAAAGA
430174 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAGA
430189 AAAGATAAAAGAAAAGA
1 AAAGA-AAAA-AAAAGA
430206 A
1 A
430207 CAAAAAGATG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
15 31 0.56
16 17 0.31
17 7 0.13
ACGTcount: A:0.81, C:0.01, G:0.16, T:0.01
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:430177 original size:31 final size:32
Alignment explanation
Indices: 430132--430211 Score: 108
Period size: 31 Copynumber: 2.4 Consensus size: 32
430122 CATATCAAAG
*
430132 AGAAAAGAAGAAAAGAAAAACAAAGAAAAAAA
1 AGAAAAGAAGAAAAGAAAAAAAAAGAAAAAAA
430164 AGAAAA-AAGAAAAGAAAAAAAAAGAAAAGATAAA
1 AGAAAAGAAGAAAAGAAAAAAAAAG-AAA-A-AAA
*
430198 AGAAAAGAACAAAA
1 AGAAAAGAAGAAAA
430212 AGATGACAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
31 17 0.40
32 9 0.21
33 1 0.02
34 9 0.21
35 6 0.14
ACGTcount: A:0.81, C:0.03, G:0.15, T:0.01
Consensus pattern (32 bp):
AGAAAAGAAGAAAAGAAAAAAAAAGAAAAAAA
Found at i:430185 original size:22 final size:22
Alignment explanation
Indices: 430153--430203 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
430143 AAAGAAAAAC
430153 AAAG-AAAAAAAAGAAAAAAGA
1 AAAGAAAAAAAAAGAAAAAAGA
* *
430174 AAAGAAAAAAAAAGAAAAGATA
1 AAAGAAAAAAAAAGAAAAAAGA
430196 AAAGAAAA
1 AAAGAAAA
430204 GAACAAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAGAAAAAAAAAGAAAAAAGA
Found at i:430212 original size:27 final size:27
Alignment explanation
Indices: 430132--430212 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
430122 CATATCAAAG
430132 AGAAAAGAAGAAAAG-AAA-AACAAAGAA
1 AGAAAAGAA-AAAAGAAAAGAACAAA-AA
* *
430159 AAAAAAGAAAAAAGAAAAGAAAAAAAA
1 AGAAAAGAAAAAAGAAAAGAACAAAAA
*
430186 AGAAAAGATAAAAGAAAAGAACAAAAA
1 AGAAAAGAAAAAAGAAAAGAACAAAAA
430213 GATGACAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 5 0.11
27 37 0.79
28 5 0.11
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.01
Consensus pattern (27 bp):
AGAAAAGAAAAAAGAAAAGAACAAAAA
Found at i:431314 original size:33 final size:32
Alignment explanation
Indices: 431255--431317 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
431245 AAGAAATATT
* *
431255 GAATGTTGGGGCATCTTTGGAGATTCAACATC
1 GAATATTGGGGCATATTTGGAGATTCAACATC
431287 GAATATTGGAGGCATATATTGGA-ATTCAACA
1 GAATATTGG-GGCATAT-TTGGAGATTCAACA
431318 AATATCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 8 0.30
33 14 0.52
34 5 0.19
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (32 bp):
GAATATTGGGGCATATTTGGAGATTCAACATC
Found at i:431588 original size:28 final size:28
Alignment explanation
Indices: 431548--431622 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
431538 TACATACACA
431548 CACAAACACACACACACACGCGCGTGCG
1 CACAAACACACACACACACGCGCGTGCG
*
431576 CACAAACACACACACACGCGCGCGTGCG
1 CACAAACACACACACACACGCGCGTGCG
*
431604 CACAAACACACAAACACAC
1 CACAAACACACACACACAC
431623 ACACACACCG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.40, C:0.43, G:0.15, T:0.03
Consensus pattern (28 bp):
CACAAACACACACACACACGCGCGTGCG
Done.