Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2577652
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 11
Found at i:2491930 original size:37 final size:36
Alignment explanation
Indices: 2491890--2492035 Score: 139
Period size: 38 Copynumber: 3.9 Consensus size: 36
2491880 GAGTCCGGTG
* *
2491890 GAGGGTATATATTTTTCGGATCAGGTCGAGTCGAATG
1 GAGGGTATATATTTTTCGGATC-GGTCGAGTCGAGTA
* * * * *
2491927 GAGGATATAAAATTTTCGGGTTGGGTCAGAGTCGAGTA
1 GAGGGTATATATTTTTC-GGATCGGTC-GAGTCGAGTA
*
2491965 GAGGGTATATATTTTTCGGATCGGATTGGAGTCGAGTA
1 GAGGGTATATATTTTTCGGATCGG--TCGAGTCGAGTA
* * *
2492003 GAAGGTATATATTTTTCGGGTCGAATCGAGTCG
1 GAGGGTATATATTTTTCGGATCG-GTCGAGTCG
2492036 GATGGAGATA
Statistics
Matches: 87, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
37 30 0.34
38 56 0.64
39 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.33, T:0.32
Consensus pattern (36 bp):
GAGGGTATATATTTTTCGGATCGGTCGAGTCGAGTA
Found at i:2491977 original size:113 final size:111
Alignment explanation
Indices: 2491772--2492050 Score: 267
Period size: 113 Copynumber: 2.5 Consensus size: 111
2491762 GGAGGATTCG
* * * *
2491772 GGTGGAGGGTATATATTTTTTTGGGTCGGGTCAAGTC-AGATTGTGGATATAAAATTTTCAAGTC
1 GGTGGAGGGTATATA-TTTTTCGGGTC-GGTCGAGTCGA-ATGGAGGATATAAAATTTTCAAGTC
** * * * * * *
2491836 GGGTTGGATTCGGGTGGAGGGTGCATATTTTTAGGGTCGGGTCT-GAGTCC
63 GGGTCAGAGTCGAGTAGAGGGTACATATTTTTAGGATCGGAT-TGGAGT-C
* ** *
2491886 GGTGGAGGGTATATATTTTTCGGATCAGGTCGAGTCGAATGGAGGATATAAAATTTTCGGGTTGG
1 GGTGGAGGGTATATATTTTTCGGGTC-GGTCGAGTCGAATGGAGGATATAAAATTTTCAAGTCGG
* *
2491951 GTCAGAGTCGAGTAGAGGGTATATATTTTTCGGATCGGATTGGAGTC
65 GTCAGAGTCGAGTAGAGGGTACATATTTTTAGGATCGGATTGGAGTC
* * * *
2491998 GAGTAGAAGGTATATATTTTTCGGGTCGAATCGAGTCGGATGGA-GATATAAAA
1 G-GTGGAGGGTATATATTTTTCGGGTCG-GTCGAGTCGAATGGAGGATATAAAA
2492051 AATTTGGTCG
Statistics
Matches: 137, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
112 13 0.09
113 108 0.79
114 16 0.12
ACGTcount: A:0.24, C:0.09, G:0.34, T:0.33
Consensus pattern (111 bp):
GGTGGAGGGTATATATTTTTCGGGTCGGTCGAGTCGAATGGAGGATATAAAATTTTCAAGTCGGG
TCAGAGTCGAGTAGAGGGTACATATTTTTAGGATCGGATTGGAGTC
Found at i:2492017 original size:75 final size:74
Alignment explanation
Indices: 2491860--2492025 Score: 178
Period size: 75 Copynumber: 2.2 Consensus size: 74
2491850 TGGAGGGTGC
* * *
2491860 ATAT-TTTTAGGGTCGGGTCTGAGTCCGGTGGAGGGTATATATTTTTCGGATCAGGTCGAGTCGA
1 ATATATTTTCGGGTCGGGTCAGAGTCCGGTAGAGGGTATATATTTTTCGGATCAGGTCGAGTCGA
*
2491924 ATGGAGGAT
66 ATGAAGGAT
* * *
2491933 ATAAAATTTTCGGGTTGGGTCAGAGT-CGAGTAGAGGGTATATATTTTTCGGATC-GGATTGGAG
1 AT-ATATTTTCGGGTCGGGTCAGAGTCCG-GTAGAGGGTATATATTTTTCGGATCAGG--TCGAG
*
2491996 TCGAGTAGAAGG-T
62 TCGAAT-GAAGGAT
2492009 ATATATTTTTCGGGTCG
1 ATATA-TTTTCGGGTCG
2492026 AATCGAGTCG
Statistics
Matches: 76, Mismatches: 10, Indels: 11
0.78 0.10 0.11
Matches are distributed among these distances:
73 2 0.03
74 5 0.07
75 43 0.57
76 22 0.29
77 4 0.05
ACGTcount: A:0.23, C:0.10, G:0.34, T:0.34
Consensus pattern (74 bp):
ATATATTTTCGGGTCGGGTCAGAGTCCGGTAGAGGGTATATATTTTTCGGATCAGGTCGAGTCGA
ATGAAGGAT
Found at i:2509958 original size:25 final size:24
Alignment explanation
Indices: 2509930--2509977 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
2509920 TCCCCCCGTT
* *
2509930 CCGTCCTCGTTTAAAAAATCCGTAC
1 CCGTCCCCGCTTAAAAAA-CCGTAC
2509955 CCGTCCCCGCTTAAAAAACCGTA
1 CCGTCCCCGCTTAAAAAACCGTA
2509978 GGGGTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.23
Consensus pattern (24 bp):
CCGTCCCCGCTTAAAAAACCGTAC
Found at i:2510124 original size:36 final size:38
Alignment explanation
Indices: 2510090--2510162 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 38
2510080 TATATATATT
2510090 TAAATTAAATATATAA-ATATT-ATA-TATATATATATGT
1 TAAATTAAAT-TA-AATATATTAATATTATATATATATGT
* *
2510127 TAATTTAAATTAAATTTATTAATATTATATATATAT
1 TAAATTAAATTAAATATATTAATATTATATATATAT
2510163 AATAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
35 2 0.06
36 6 0.19
37 12 0.39
38 11 0.35
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (38 bp):
TAAATTAAATTAAATATATTAATATTATATATATATGT
Found at i:2510169 original size:38 final size:38
Alignment explanation
Indices: 2510080--2510169 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 38
2510070 TCAGGCCGGG
2510080 TATAT-AT-ATTTAAATTAAATATATAAATATTATATA
1 TATATAATAATTTAAATTAAATATATAAATATTATATA
* *
2510116 TATATATATGTTAATTTAAATTAAATTTATTAATATTATATA
1 TATATA-A---TAATTTAAATTAAATATATAAATATTATATA
2510158 TATATAATAATT
1 TATATAATAATT
2510170 ATTTTTAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
36 5 0.11
38 6 0.13
41 2 0.04
42 33 0.72
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (38 bp):
TATATAATAATTTAAATTAAATATATAAATATTATATA
Found at i:2517459 original size:44 final size:44
Alignment explanation
Indices: 2517370--2517488 Score: 206
Period size: 44 Copynumber: 2.8 Consensus size: 44
2517360 ACAATTAAAT
*
2517370 AATAAAAACATTAAGAAACAAAAT-AA-AAAAAGCCCATAATTA
1 AATAAAAACATTAAGAAACAAAATAAATAAAAAGCACATAATTA
*
2517412 AATAAAAACATTAAGAAACAAAATAAATAAAAAGTACATAATTA
1 AATAAAAACATTAAGAAACAAAATAAATAAAAAGCACATAATTA
2517456 AATAAAAACATTAAGAAACAAAATAAATAAAAA
1 AATAAAAACATTAAGAAACAAAATAAATAAAAA
2517489 TAAGTCTATC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
42 24 0.33
43 2 0.03
44 47 0.64
ACGTcount: A:0.70, C:0.08, G:0.04, T:0.18
Consensus pattern (44 bp):
AATAAAAACATTAAGAAACAAAATAAATAAAAAGCACATAATTA
Found at i:2517903 original size:21 final size:21
Alignment explanation
Indices: 2517879--2517932 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
2517869 TTGGTGGTAG
*
2517879 CATCTGAAATGGTTGCAGTGA
1 CATCTGAAATGGTTACAGTGA
* ** *
2517900 CATCGGAAATGGTTATGGTGC
1 CATCTGAAATGGTTACAGTGA
2517921 CATCTGAAATGG
1 CATCTGAAATGG
2517933 CTACGATGAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (21 bp):
CATCTGAAATGGTTACAGTGA
Found at i:2520133 original size:4 final size:4
Alignment explanation
Indices: 2520124--2520220 Score: 50
Period size: 4 Copynumber: 22.8 Consensus size: 4
2520114 AGAAGTAATT
* * *
2520124 TTTA TTTA TTTA TTTA TTTTGA ATTA TTTA TTTA TTTTGA ATCA TTTA
1 TTTA TTTA TTTA TTTA -TTT-A TTTA TTTA TTTA -TTT-A TTTA TTTA
* * * * * * *
2520172 TTTA TTTC TATA TTCA TTTG TTTCAA ATAA ATTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTT--A TTTA TTTA TTTA TTTA TTTA TTT
2520221 GATTGAAGGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
4 57 0.83
5 9 0.13
6 3 0.04
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:2520150 original size:18 final size:18
Alignment explanation
Indices: 2520129--2520178 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
2520119 TAATTTTTAT
2520129 TTATTTATTTATTTTGAA
1 TTATTTATTTATTTTGAA
2520147 TTATTTATTTATTTTGAA
1 TTATTTATTTATTTTGAA
*
2520165 TCATTTATTTATTT
1 TTATTTATTTATTT
2520179 CTATATTCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (18 bp):
TTATTTATTTATTTTGAA
Found at i:2522161 original size:24 final size:24
Alignment explanation
Indices: 2522134--2522181 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
2522124 GGTACTGGAC
*
2522134 ATGTAGATGAGGGTGATGGTGATG
1 ATGTAGATGAGGGTAATGGTGATG
*
2522158 ATGTTGATGAGGGTAATGGTGATG
1 ATGTAGATGAGGGTAATGGTGATG
2522182 CTGATGTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.00, G:0.44, T:0.31
Consensus pattern (24 bp):
ATGTAGATGAGGGTAATGGTGATG
Found at i:2523009 original size:28 final size:28
Alignment explanation
Indices: 2522973--2523055 Score: 109
Period size: 28 Copynumber: 3.1 Consensus size: 28
2522963 AAATTTGTAA
2522973 TTTTTTAGTTAATCAAACTCCATTTTCT
1 TTTTTTAGTTAATCAAACTCCATTTTCT
* *
2523001 TTTTTTAGTTAATCTAACTCCA--AT-T
1 TTTTTTAGTTAATCAAACTCCATTTTCT
* *
2523026 TTTTTTAGTTAACCGAACTCCATTTTCT
1 TTTTTTAGTTAATCAAACTCCATTTTCT
2523054 TT
1 TT
2523056 AATATTCGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
25 21 0.45
26 1 0.02
27 1 0.02
28 24 0.51
ACGTcount: A:0.24, C:0.18, G:0.05, T:0.53
Consensus pattern (28 bp):
TTTTTTAGTTAATCAAACTCCATTTTCT
Found at i:2528659 original size:28 final size:28
Alignment explanation
Indices: 2528627--2528682 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
2528617 TCTCGTTTAC
*
2528627 ATTATACCATTAAGTCAATGTTTGAAAT
1 ATTATACCATTAAGTCAATGCTTGAAAT
** *
2528655 ATTATGTCATTAAGTCAGTGCTTGAAAT
1 ATTATACCATTAAGTCAATGCTTGAAAT
2528683 CAACAACGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (28 bp):
ATTATACCATTAAGTCAATGCTTGAAAT
Found at i:2530608 original size:156 final size:156
Alignment explanation
Indices: 2530416--2530893 Score: 647
Period size: 156 Copynumber: 3.0 Consensus size: 156
2530406 ATGGAATAAG
** *
2530416 GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAACATATTATAAAAAAGAGGAATTG
1 GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAATTTATTATCAAAAAGAGGAATTG
*
2530481 AAAGTACAGATGTATTCTACTATGGTTTAGGAGCATGTGGCTCAAATTTGATAAAATCAGACTTA
66 AAAGTACACATGTATTCTACTATGGTTTAGGAGCATGTGGCTCAAATTTGATAAAAT-AGACTTA
2530546 AAATAAATGACGAATTGAAGAAATAGT
130 AAATAAATGACGAATTGAAGAAATAGT
*
2530573 GAGATTATG-AAAATTGAAGGACTAAATTGAAAAATAAAAAATTTGTTATCAAAAAGAGGAATTG
1 GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAATTTATTATCAAAAAGAGGAATTG
* * ** ** * *
2530637 AAAGTAAACATGCATTCTACTATTTTTTAGGAGCATGTCACTCAAATTTGGTAAAAATAGAATTA
66 AAAGTACACATGTATTCTACTATGGTTTAGGAGCATGTGGCTCAAATTTGAT-AAAATAGACTTA
2530702 AAATAAATGACGAATTGAAGAAATAAG-
130 AAATAAATGACGAATTGAAGAAAT-AGT
*
2530729 GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAATTTGA-TATCAAATAGAGGAATT
1 GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAATTT-ATTATCAAAAAGAGGAATT
* * * * * *
2530793 GAAAATACACATTTATTCTACTATGGTTTACGAGCATGTGGTTTAAATTTGGTAGAAAATAGACT
65 GAAAGTACACATGTATTCTACTATGGTTTAGGAGCATGTGGCTCAAATTT-G-ATAAAATAGACT
* * ** *
2530858 TAAAATGAAGGAAAAATTGAAGAAATAAT
128 TAAAATAAATGACGAATTGAAGAAATAGT
*
2530887 GAAATTA
1 GAGATTA
2530894 GGGACTAAAT
Statistics
Matches: 279, Mismatches: 35, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
156 134 0.48
157 107 0.38
158 38 0.14
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.28
Consensus pattern (156 bp):
GAGATTATGAAAAATTGAAGGACTAAATTGAAAAATAAAAAATTTATTATCAAAAAGAGGAATTG
AAAGTACACATGTATTCTACTATGGTTTAGGAGCATGTGGCTCAAATTTGATAAAATAGACTTAA
AATAAATGACGAATTGAAGAAATAGT
Found at i:2532714 original size:16 final size:17
Alignment explanation
Indices: 2532693--2532725 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
2532683 TCCATTATTT
2532693 TAATTTTTT-TTAAAAA
1 TAATTTTTTATTAAAAA
2532709 TAATTTTTTATTAAAAA
1 TAATTTTTTATTAAAAA
2532726 AACAGCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TAATTTTTTATTAAAAA
Found at i:2534644 original size:23 final size:21
Alignment explanation
Indices: 2534601--2534679 Score: 56
Period size: 22 Copynumber: 3.7 Consensus size: 21
2534591 ATCCCTCTAT
* *
2534601 ATATTATTTT-TTCAAT-TAA
1 ATATTATTTTATTAAATAAAA
2534620 ATCATTATTTTCATTAAATAAAA
1 AT-ATTATTTT-ATTAAATAAAA
*
2534643 ATAATGT-TTTTATTGAATAAAA
1 AT-AT-TATTTTATTAAATAAAA
*
2534665 ATAATATTTTTATTA
1 ATATTA-TTTTATTA
2534680 TTATTTTAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
19 2 0.04
20 9 0.19
21 1 0.02
22 24 0.51
23 10 0.21
24 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.51
Consensus pattern (21 bp):
ATATTATTTTATTAAATAAAA
Found at i:2534652 original size:22 final size:22
Alignment explanation
Indices: 2534625--2534679 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
2534615 ATTAAATCAT
*
2534625 TATTTTCATTAAATAAAAATAA
1 TATTTTTATTAAATAAAAATAA
* *
2534647 TGTTTTTATTGAATAAAAATAA
1 TATTTTTATTAAATAAAAATAA
2534669 TATTTTTATTA
1 TATTTTTATTA
2534680 TTATTTTAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
TATTTTTATTAAATAAAAATAA
Found at i:2543252 original size:21 final size:22
Alignment explanation
Indices: 2543226--2543268 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
2543216 TCTAATATCT
2543226 AATATTTT-AAATTTCAAATAA
1 AATATTTTAAAATTTCAAATAA
*
2543247 AATATTTTAAAATTTGAAATAA
1 AATATTTTAAAATTTCAAATAA
2543269 TTTAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AATATTTTAAAATTTCAAATAA
Found at i:2543277 original size:16 final size:17
Alignment explanation
Indices: 2543246--2543280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2543236 ATTTCAAATA
*
2543246 AAATATTTTAAAATTTG
1 AAATAATTTAAAATTTG
*
2543263 AAATAATTTAAATTTTG
1 AAATAATTTAAAATTTG
2543280 A
1 A
2543281 GTTAGAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
AAATAATTTAAAATTTG
Found at i:2543646 original size:40 final size:40
Alignment explanation
Indices: 2543601--2543691 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
2543591 TTGAATAAAT
*
2543601 GCCGCAAAAGATCTAACTTTAGAGGCGTTTGTATAAAAAG
1 GCCGCAAAAGATCTAACTTTAGAGGCGTTTGTATAAAAAC
* * * * *
2543641 GCCGCAAAATATCTTACTTTAGTGGCTTTTGTATACAAAC
1 GCCGCAAAAGATCTAACTTTAGAGGCGTTTGTATAAAAAC
*
2543681 GCCGCTAAAGA
1 GCCGCAAAAGA
2543692 CTAGTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (40 bp):
GCCGCAAAAGATCTAACTTTAGAGGCGTTTGTATAAAAAC
Found at i:2543854 original size:40 final size:41
Alignment explanation
Indices: 2543655--2544096 Score: 420
Period size: 41 Copynumber: 10.8 Consensus size: 41
2543645 CAAAATATCT
* *
2543655 TACTTTAGTGGC-TTTTGTATACAAACGCCGCTAAAGACTAG
1 TACTTTAGTGGCGTTTT-TATACAAACGCCGCTATAGACTCG
* * * * *
2543696 TACTATAGTGGCGTTTTTACACAAACTCCGCTATAGAATCA
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCG
2543737 TACTTTAG-GAGCGGTTTTTATACAAACGCCGCTA-AGACTCG
1 TACTTTAGTG-GC-GTTTTTATACAAACGCCGCTATAGACTCG
*
2543778 TACTTTAGTGGCGTTTTTTATA-AAA-GCACTGTTATA-ACTCG
1 TACTTTAGTGGCG-TTTTTATACAAACGC-C-GCTATAGACTCG
* * * *
2543819 TACTGTAGTGGCGTTTGTATAAAAACGCCGCTATA-ACTCA
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCG
*
2543859 TACTTTAGTGGCGTTTTTATTCAAACGCCGCTATAGACTCG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCG
* *
2543900 TACTTTAGTGGCGATTTTTTTATAAACGCCGCTATAGACTCG
1 TACTTTAGTGGCG-TTTTTATACAAACGCCGCTATAGACTCG
** *
2543942 TACTTTAGTGGTATTTTT-TACAAACGCCGCTAAAGACTCG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCG
* * * * *
2543982 TTCTTTCGTGGCGTTTTTGTTTACAAACG-CGCTATAAACTTG
1 TACTTTAGTGGCG-TTTT-TATACAAACGCCGCTATAGACTCG
* * * * * * *
2544024 TACTTTAGTGGCATTTTTAAACAAATGCC-ATGAAAAACTTG
1 TACTTTAGTGGCGTTTTTATACAAACGCCGCT-ATAGACTCG
*
2544065 TACTTTAATGGCGTTTGTGT-TACAAACGCCGC
1 TACTTTAGTGGCGTTT-T-TATACAAACGCCGC
2544097 AAATTTAAAG
Statistics
Matches: 332, Mismatches: 49, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.01
40 90 0.27
41 138 0.42
42 93 0.28
43 9 0.03
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (41 bp):
TACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCG
Found at i:2543892 original size:163 final size:165
Alignment explanation
Indices: 2543655--2543961 Score: 433
Period size: 163 Copynumber: 1.9 Consensus size: 165
2543645 CAAAATATCT
* * *
2543655 TACTTTAGTGGCTTTTGTATACAAACGCCGCTAAAGACTAGTACTATAGTGGCGTTTTTACACAA
1 TACTGTAGTGGCGTTTGTATAAAAACGCCGCTAAAGACTAGTACTATAGTGGCGTTTTTACACAA
* *
2543720 ACTCCGCTATAGAATCATACTTTAG-GAGCGGTTTTTATACAAACGCCGCTA-AGACTCGTACTT
66 ACGCCGCTATAGAATCATACTTTAGTG-GCGATTTTTATACAAACGCCGCTATAGACTCGTACTT
*
2543783 TAGTGGCGTTTTTTATAAAAGCACTGTTATAACTCG
130 TAGTGGCATTTTTTATAAAAGCACTGTTATAACTCG
* * **
2543819 TACTGTAGTGGCGTTTGTATAAAAACGCCGCTATA-ACTCA-TACTTTAGTGGCGTTTTTATTCA
1 TACTGTAGTGGCGTTTGTATAAAAACGCCGCTAAAGACT-AGTACTATAGTGGCGTTTTTACACA
* * * *
2543882 AACGCCGCTATAGACTCGTACTTTAGTGGCGATTTTTTTATAAACGCCGCTATAGACTCGTACTT
65 AACGCCGCTATAGAATCATACTTTAGTGGCGATTTTTATACAAACGCCGCTATAGACTCGTACTT
*
2543947 TAGTGGTATTTTTTA
130 TAGTGGCATTTTTTA
2543962 CAAACGCCGC
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
163 67 0.54
164 58 0.46
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (165 bp):
TACTGTAGTGGCGTTTGTATAAAAACGCCGCTAAAGACTAGTACTATAGTGGCGTTTTTACACAA
ACGCCGCTATAGAATCATACTTTAGTGGCGATTTTTATACAAACGCCGCTATAGACTCGTACTTT
AGTGGCATTTTTTATAAAAGCACTGTTATAACTCG
Found at i:2547456 original size:43 final size:43
Alignment explanation
Indices: 2547408--2547524 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 43
2547398 ATGGTAATTA
*
2547408 GCGGCGTTTGTATCCAAAAACGCCGCTAAATATCT-AACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTAAAGATCTCAACCTTTT
* *
2547451 GCGGCGTTTGTT-CAAAACACGCCGCTATAGATCTCGACCTTTT
1 GCGGCGTTTGTTCCAAAA-ACGCCGCTAAAGATCTCAACCTTTT
* *
2547494 ---GCGTTTGTTCCAAAAATGCCGCTATAGATCT
1 GCGGCGTTTGTTCCAAAAACGCCGCTAAAGATCT
2547525 TGAACTATGG
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
40 24 0.36
41 10 0.15
42 15 0.22
43 18 0.27
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTAAAGATCTCAACCTTTT
Found at i:2548957 original size:15 final size:15
Alignment explanation
Indices: 2548937--2548974 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
2548927 TCTTTGCATT
*
2548937 GAACTTGACAAATTC
1 GAACTTGAAAAATTC
2548952 GAACTTGAAAAATTC
1 GAACTTGAAAAATTC
2548967 GAACTTGA
1 GAACTTGA
2548975 TTTGATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (15 bp):
GAACTTGAAAAATTC
Found at i:2551375 original size:55 final size:55
Alignment explanation
Indices: 2551291--2551657 Score: 504
Period size: 55 Copynumber: 6.7 Consensus size: 55
2551281 CAAATGATAA
* * * **
2551291 GTCTGCTCCCTATTCCTTCAGGGAGTATAAGACTAGAACAAACTTCGGCAAACGT
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGT
* * *
2551346 GTCTGCTCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAATAAACGG
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGT
*
2551401 GTTTGCTCCCTATTCGTTCAGGGAGTAT-AGAACTCGAACAATCTTCAACAAACGT
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAG-ACTCGAACAATCTTCAACAAACGT
** * *
2551456 GTCTGCTCCCTATTATTTCAGGGAGTATAAGACTCGAACAATCTTCAATAAACGG
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGT
* ***
2551511 GTCCGCTCCCTATTCGTTCAGGGAGTAT-AGAACTCGAACAATCTTCAGTGAACGT
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAG-ACTCGAACAATCTTCAACAAACGT
* *
2551566 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCAAACAATCTTCAACTAACGT
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGT
* * *
2551621 GTCTGCTCCCTATTCTTTCAGAGAGTATAGGACTCGA
1 GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGA
2551658 TCTTCATAAA
Statistics
Matches: 277, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
54 4 0.01
55 269 0.97
56 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (55 bp):
GTCTGCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGT
Found at i:2551727 original size:37 final size:37
Alignment explanation
Indices: 2551668--2551743 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
2551658 TCTTCATAAA
2551668 ATGAGTTTGCTTCACTACTCTTCCGTGAAGCCTTATAG
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGCCTTA-AG
* *
2551706 ATGA-TTTTCTTCACTACTCTTCCGTGAAGGCTTAAG
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGCCTTAAG
2551742 AT
1 AT
2551744 TGAATTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 4 0.11
37 28 0.78
38 4 0.11
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (37 bp):
ATGAGTTTGCTTCACTACTCTTCCGTGAAGCCTTAAG
Found at i:2553040 original size:7 final size:7
Alignment explanation
Indices: 2553030--2553227 Score: 54
Period size: 7 Copynumber: 26.3 Consensus size: 7
2553020 TTTCTTTTTA
2553030 TTTTTCT
1 TTTTTCT
2553037 TTTTTCAT
1 TTTTTC-T
2553045 CATTTTT-T
1 --TTTTTCT
2553053 TTATTT-T
1 TT-TTTCT
*
2553060 TTTCTCT
1 TTTTTCT
*
2553067 TTCTTCT
1 TTTTTCT
*
2553074 TTTTTCA
1 TTTTTCT
2553081 TTTTTCAT
1 TTTTTC-T
2553089 TTTATT-T
1 TTT-TTCT
*
2553096 TATTT-T
1 TTTTTCT
*
2553102 TTCTTCT
1 TTTTTCT
2553109 TTTTT-T
1 TTTTTCT
2553115 ATTTTT-T
1 -TTTTTCT
2553122 TATTTT-T
1 T-TTTTCT
2553129 TATTTTCT
1 T-TTTTCT
*
2553137 TCATTTCT
1 T-TTTTCT
*
2553145 CATTTTCAT
1 -TTTTTC-T
2553154 TTTCTTCATT
1 TTT-TTC--T
2553164 TTTTTCATT
1 TTTTTC--T
2553173 TTTTTCAT
1 TTTTTC-T
2553181 TTTTT-T
1 TTTTTCT
*
2553187 TTCATT-T
1 TT-TTTCT
2553194 TTTTTCAT
1 TTTTTC-T
2553202 TTTTTCAT
1 TTTTTC-T
2553210 TTTTTCT
1 TTTTTCT
2553217 ATTTCTTCT
1 -TTT-TTCT
2553226 TT
1 TT
2553228 AAGCGAAATA
Statistics
Matches: 152, Mismatches: 19, Indels: 39
0.72 0.09 0.19
Matches are distributed among these distances:
6 17 0.11
7 60 0.39
8 44 0.29
9 22 0.14
10 9 0.06
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTCT
Found at i:2553058 original size:9 final size:9
Alignment explanation
Indices: 2553015--2553220 Score: 93
Period size: 9 Copynumber: 21.9 Consensus size: 9
2553005 TGAACCCCCC
2553015 TTTTATTTCT
1 TTTTATTT-T
2553025 TTTTATTTT
1 TTTTATTTT
*
2553034 TCTT-TTTT
1 TTTTATTTT
** *
2553042 CATCATTTT
1 TTTTATTTT
2553051 TTTTATTTT
1 TTTTATTTT
*
2553060 TTTCTCTTTCT
1 TTT-TATTT-T
2553071 TCTTT-TTTCAT
1 T-TTTATTT--T
2553082 TTTTCATTTT
1 TTTT-ATTTT
2553092 ATTTTATTTT
1 -TTTTATTTT
*
2553102 TTCTT-CTTT
1 TT-TTATTTT
2553111 TTTTA-TTT
1 TTTTATTTT
2553119 TTTTA--TT
1 TTTTATTTT
2553126 TTTTATTTT
1 TTTTATTTT
* *
2553135 CTTCATTTCT
1 TTTTATTT-T
2553145 CATTTTCATTTT
1 --TTTT-ATTTT
* *
2553157 CTTCATTTT
1 TTTTATTTT
*
2553166 TTTCATTTT
1 TTTTATTTT
*
2553175 TTTCATTTTT
1 TTTTA-TTTT
2553185 TTTTCATTTT
1 TTTT-ATTTT
2553195 TTTTCA-TTT
1 TTTT-ATTTT
*
2553204 TTTCATTTT
1 TTTTATTTT
*
2553213 TTCTATTT
1 TTTTATTT
2553221 CTTCTTTAAG
Statistics
Matches: 156, Mismatches: 21, Indels: 39
0.72 0.10 0.18
Matches are distributed among these distances:
7 7 0.04
8 16 0.10
9 65 0.42
10 46 0.29
11 10 0.06
12 8 0.05
13 4 0.03
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTATTTT
Found at i:2553068 original size:42 final size:42
Alignment explanation
Indices: 2553022--2553134 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
2553012 CCCTTTTATT
* *
2553022 TCTTTTTATTTTTCTTTTTTCATCATTTTTTTTA-TTTTT-TTC
1 TCTTTTTATTTTTCATTTTTCAT--TTTATTTTATTTTTTCTTC
*
2553064 TCTTTCTTCTTTTTTCATTTTTCATTTTATTTTATTTTTTCTTC
1 TCTTT-TT-ATTTTTCATTTTTCATTTTATTTTATTTTTTCTTC
* * *
2553108 TTTTTTTATTTTTTTATTTTTTATTTT
1 TCTTTTTA-TTTTTCATTTTTCATTTT
2553135 CTTCATTTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 13 0.22
43 25 0.42
44 21 0.36
ACGTcount: A:0.10, C:0.11, G:0.00, T:0.80
Consensus pattern (42 bp):
TCTTTTTATTTTTCATTTTTCATTTTATTTTATTTTTTCTTC
Found at i:2553096 original size:18 final size:18
Alignment explanation
Indices: 2553073--2553220 Score: 107
Period size: 18 Copynumber: 8.1 Consensus size: 18
2553063 CTCTTTCTTC
2553073 TTTTTTCA-TTTTTCATT
1 TTTTTTCATTTTTTCATT
2553090 TTATTTT-ATTTTTTC-TT
1 TT-TTTTCATTTTTTCATT
* *
2553107 CTTTTTTTATTTTTT--TA
1 -TTTTTTCATTTTTTCATT
2553124 TTTTTT-ATTTTCTTCATT
1 TTTTTTCATTTT-TTCATT
2553142 TCTCATTTTCATTTTCTTCA-T
1 T-T--TTTTCATTTT-TTCATT
2553163 TTTTTTCATTTTTTTCATTT
1 TTTTTTCA-TTTTTTCA-TT
2553183 TTTTTTCATTTTTT--TT
1 TTTTTTCATTTTTTCATT
2553199 CATTTTTTCATTTTTTCTATT
1 --TTTTTTCATTTTTTC-ATT
2553220 T
1 T
2553221 CTTCTTTAAG
Statistics
Matches: 110, Mismatches: 2, Indels: 36
0.74 0.01 0.24
Matches are distributed among these distances:
15 5 0.05
16 10 0.09
17 10 0.09
18 45 0.41
19 12 0.11
20 10 0.09
21 8 0.07
22 10 0.09
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCATTTTTTCATT
Found at i:2553205 original size:38 final size:37
Alignment explanation
Indices: 2553098--2553214 Score: 109
Period size: 38 Copynumber: 3.1 Consensus size: 37
2553088 TTTTATTTTA
*
2553098 TTTTTTC-TTCTTTTTTTATTT-TTTT-ATTTTTT-AT
1 TTTTTTCATT-TTTTTTCATTTATTTTCATTTTTTCAT
* *
2553132 TTTCTTCATTTCTCATTTTCATTT-TCTTCATTTTTTTCAT
1 TTTTTTCATTT-T--TTTTCATTTATTTTCA-TTTTTTCAT
*
2553172 TTTTTTCATTTTTTTTTCATTTTTTTTCATTTTTTCAT
1 TTTTTTCA-TTTTTTTTCATTTATTTTCATTTTTTCAT
2553210 TTTTT
1 TTTTT
2553215 CTATTTCTTC
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
34 7 0.10
35 3 0.04
37 11 0.16
38 24 0.35
39 11 0.16
40 10 0.14
41 3 0.04
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (37 bp):
TTTTTTCATTTTTTTTCATTTATTTTCATTTTTTCAT
Found at i:2564673 original size:2 final size:2
Alignment explanation
Indices: 2564661--2564695 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
2564651 TTTTAAAAAG
*
2564661 TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2564696 GTAATGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2565871 original size:22 final size:22
Alignment explanation
Indices: 2565843--2565885 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2565833 AAAGGCAGAA
2565843 GCGATATTTTCAATCGAATCAG
1 GCGATATTTTCAATCGAATCAG
2565865 GCGATATTTTCAATCGAATCA
1 GCGATATTTTCAATCGAATCA
2565886 AACGATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
GCGATATTTTCAATCGAATCAG
Found at i:2565891 original size:22 final size:22
Alignment explanation
Indices: 2565844--2565891 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
2565834 AAGGCAGAAG
**
2565844 CGATATTTTCAATCGAATCAGG
1 CGATATTTTCAATCGAATCAAA
2565866 CGATATTTTCAATCGAATCAAA
1 CGATATTTTCAATCGAATCAAA
2565888 CGAT
1 CGAT
2565892 TTTCAGACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (22 bp):
CGATATTTTCAATCGAATCAAA
Found at i:2565895 original size:20 final size:21
Alignment explanation
Indices: 2565848--2565896 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
2565838 CAGAAGCGAT
**
2565848 ATTTTCAATCGAATCAGGCGA
1 ATTTTCAATCGAATCAAACGA
2565869 TATTTTCAATCGAATCAAACG-
1 -ATTTTCAATCGAATCAAACGA
2565890 ATTTTCA
1 ATTTTCA
2565897 GACCCCCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.28
22 18 0.72
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (21 bp):
ATTTTCAATCGAATCAAACGA
Found at i:2570145 original size:2 final size:2
Alignment explanation
Indices: 2570140--2570168 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2570130 CTCTGCCTTG
2570140 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2570169 GTATCAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2575617 original size:72 final size:74
Alignment explanation
Indices: 2575477--2575632 Score: 174
Period size: 72 Copynumber: 2.1 Consensus size: 74
2575467 ATGATAAGGG
* * * *
2575477 GTATCGATACCAAGAAACATCGAATCTAATTTTGATATCGATACCGGTAGGGGAATCAATACCCT
1 GTATCGATACCAAGAAACATCGAACCTAATTTTGATATCGATACCCGAAGGGGAATCAATACCAT
2575542 AGTAGGGTA
66 AGTAGGGTA
* * * **
2575551 GTATCG-TACCAA-CAACATCGAACCT-ATTTTCGGTATCGATACCCGAAGGGGTATCGGTACCA
1 GTATCGATACCAAGAAACATCGAACCTAATTTT-GATATCGATACCCGAAGGGGAATCAATACCA
** *
2575613 TAGTATAGAA
65 TAGTAGGGTA
2575623 GTATCGATAC
1 GTATCGATAC
2575633 AGGTAGTATT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
71 5 0.07
72 48 0.71
73 9 0.13
74 6 0.09
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (74 bp):
GTATCGATACCAAGAAACATCGAACCTAATTTTGATATCGATACCCGAAGGGGAATCAATACCAT
AGTAGGGTA
Found at i:2576051 original size:56 final size:57
Alignment explanation
Indices: 2575987--2576132 Score: 194
Period size: 56 Copynumber: 2.6 Consensus size: 57
2575977 GTGCAAATGT
*
2575987 TAAG-AATTCATACTAAGTGTATGAATTTCCGTATAGGACA-CTT-TGTGCTAACATGA
1 TAAGAAATTCATACTAAGTGTATGAATTTCCGCATAGGACACCTTATGTGCTAA-AT-A
* * *
2576043 TAA-AAATTCATACTAAGTGTATGAATTTCTGCATCGGGCACCTTATGTGCTAAATA
1 TAAGAAATTCATACTAAGTGTATGAATTTCCGCATAGGACACCTTATGTGCTAAATA
*
2576099 TAAGAAATTCATACTAA-TGTATGAATTTCAGCAT
1 TAAGAAATTCATACTAAGTGTATGAATTTCCGCAT
2576133 GTGAAATATA
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
56 55 0.68
57 18 0.22
58 8 0.10
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (57 bp):
TAAGAAATTCATACTAAGTGTATGAATTTCCGCATAGGACACCTTATGTGCTAAATA
Found at i:2576153 original size:56 final size:57
Alignment explanation
Indices: 2575987--2576160 Score: 137
Period size: 56 Copynumber: 3.1 Consensus size: 57
2575977 GTGCAAATGT
* * * * * * *
2575987 TAAG-AATTCATACTAAGTGTATGAATTTCCGTATAGGAC-ACTT-TGTGCTAACATGA
1 TAAGAAATTCATACTAAGTGTATGAATTTCAGCATCGGGCAAATTATGGGATAA-AT-A
* ** * *
2576043 TAA-AAATTCATACTAAGTGTATGAATTTCTGCATCGGGCACCTTATGTGCTAAATA
1 TAAGAAATTCATACTAAGTGTATGAATTTCAGCATCGGGCAAATTATGGGATAAATA
*
2576099 TAAGAAATTCATACTAA-TGTATGAATTTCAGCAT-GTG-AAATATATGGGTATAAATA
1 TAAGAAATTCATACTAAGTGTATGAATTTCAGCATCGGGCAAAT-TATGGG-ATAAATA
*
2576155 TTAGAA
1 TAAGAA
2576161 CTGCATAATA
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
54 2 0.02
55 7 0.07
56 65 0.65
57 18 0.18
58 8 0.08
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (57 bp):
TAAGAAATTCATACTAAGTGTATGAATTTCAGCATCGGGCAAATTATGGGATAAATA
Done.