Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008165.1 Hibiscus syriacus cultivar Beakdansim tig00110745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2894944
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 11
Found at i:471975 original size:145 final size:145
Alignment explanation
Indices: 471760--472233 Score: 614
Period size: 145 Copynumber: 3.2 Consensus size: 145
471750 AAATGAACTG
* ** * * *
471760 TTATACATTTAACTAT-CATTAGTGACATTTTTTTGCC-AAAATGCACCATTAGGCATTTAACTT
1 TTATGCATTTAACT-TGCATTAGTGACACCTTTCTGCCAAAAATGCACCGTTATGCATTTAACTT
*
471823 GCATTAGTGGCACCTTTATGCTAAAAAATACACCATTTTGCATTTAACTTGCATTAATGGCACCT
65 GCATTAGTGGCACCTTTCTGC-AAAAAATACACCATTTTGCATTTAACTTGCATTAATGGCACCT
*
471888 TTATGCCAAAAACACCA
129 TTCTGCCAAAAACACCA
* *
471905 CTT-TGAATTTAACTT-CATTAGTGGCACCTTTCTGCCAAAAATGCACCGTTATGCATTTAACTT
1 -TTATGCATTTAACTTGCATTAGTGACACCTTTCTGCCAAAAATGCACCGTTATGCATTTAACTT
* * * * *
471968 GCATTAGTGGCACTTTTCTACAAAAAAATACACCATTTTGTATTTAACTTGCATTAGTGACACCT
65 GCATTAGTGGCACCTTTCTGC-AAAAAATACACCATTTTGCATTTAACTTGCATTAATGGCACCT
*
472033 TTCTGCCAAAAATAGACCA
129 TTCTGCC-AAAA-ACACCA
* *
472052 TTATGCATTTAACTTGCATTAGTGACACCTTTTCTGCAAAAAAATGCACCGTTATGCGTTTAACT
1 TTATGCATTTAACTTGCATTAGTGACACC-TTTCTGC-CAAAAATGCACCGTTATGCATTTAACT
* ** *
472117 TGCATTAGTGGCACCTTCCTGCAAAAAATGTACCATTTTGCATTTAACTTGCATTAATGGCATCT
64 TGCATTAGTGGCACCTTTCTGCAAAAAATACACCATTTTGCATTTAACTTGCATTAATGGCACCT
472182 TTCTGCCAAAAATGCACCA
129 TTCTGCCAAAAA--CACCA
* *
472201 TTAAGCATTTAACTTGCATTAGTGGCACCTTTC
1 TTATGCATTTAACTTGCATTAGTGACACCTTTC
472234 ATTATTCCAT
Statistics
Matches: 286, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
144 18 0.06
145 97 0.34
146 8 0.03
147 17 0.06
148 20 0.07
149 82 0.29
150 44 0.15
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (145 bp):
TTATGCATTTAACTTGCATTAGTGACACCTTTCTGCCAAAAATGCACCGTTATGCATTTAACTTG
CATTAGTGGCACCTTTCTGCAAAAAATACACCATTTTGCATTTAACTTGCATTAATGGCACCTTT
CTGCCAAAAACACCA
Found at i:471986 original size:49 final size:49
Alignment explanation
Indices: 471760--472233 Score: 548
Period size: 49 Copynumber: 9.7 Consensus size: 49
471750 AAATGAACTG
* * ** *
471760 TTATACATTTAACTAT-CATTAGTGACATTTTTTTGCC-AAAATGCACCA
1 TTATGCATTTAACT-TGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* * * *
471808 TTAGGCATTTAACTTGCATTAGTGGCACCTTTATGCTAAAAAATACACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGC-CAAAAATGCACCA
* * *
471858 TTTTGCATTTAACTTGCATTAATGGCACCTTTATGCCAAAAA--CACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* *
471905 CTT-TGAATTTAACTT-CATTAGTGGCACCTTTCTGCCAAAAATGCACCG
1 -TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* * * *
471953 TTATGCATTTAACTTGCATTAGTGGCACTTTTCTACAAAAAAATACACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGC-CAAAAATGCACCA
* * *
472003 TTTTGTATTTAACTTGCATTAGTGACACCTTTCTGCCAAAAATAG-ACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAAT-GCACCA
* * *
472052 TTATGCATTTAACTTGCATTAGTGACACCTTTTCTGCAAAAAAATGCACCG
1 TTATGCATTTAACTTGCATTAGTGGCACC-TTTCTGC-CAAAAATGCACCA
* * * *
472103 TTATGCGTTTAACTTGCATTAGTGGCACCTTCCTGCAAAAAATGTACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* * *
472152 TTTTGCATTTAACTTGCATTAATGGCATCTTTCTGCCAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
*
472201 TTAAGCATTTAACTTGCATTAGTGGCACCTTTC
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTC
472234 ATTATTCCAT
Statistics
Matches: 364, Mismatches: 49, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
46 24 0.07
47 19 0.05
48 45 0.12
49 142 0.39
50 98 0.27
51 36 0.10
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (49 bp):
TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
Found at i:475214 original size:49 final size:49
Alignment explanation
Indices: 475155--475281 Score: 191
Period size: 49 Copynumber: 2.6 Consensus size: 49
475145 GCACCGTTAG
* *** *
475155 GCATTTAACTTGCATTGGTGGCACCTTTCTACCAAAAATGCGTCATTTT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAATGAACCATTAT
* *
475204 GCATTTAACTTGTATTAGTGGCACCTTTCTGCCAAAAATGAACCATTAT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAATGAACCATTAT
475253 GCATTTAACTTGCATTAGTGGCACCTTTC
1 GCATTTAACTTGCATTAGTGGCACCTTTC
475282 ATTCTTCCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (49 bp):
GCATTTAACTTGCATTAGTGGCACCTTTCTACCAAAAATGAACCATTAT
Found at i:477578 original size:29 final size:28
Alignment explanation
Indices: 477465--477580 Score: 83
Period size: 29 Copynumber: 4.0 Consensus size: 28
477455 AACACATAAA
* *
477465 TTTCGAAAATT-ACACTTTTAGTCCCTAAAC
1 TTTC-AAAATTAACA-TTTTGGTCACT-AAC
* * * *
477495 TTTTAAAAATTATCATTTTGGTCCCTAAA
1 -TTTCAAAATTAACATTTTGGTCACTAAC
* * *
477524 TTCCAAAATTTATATTTTGG-CTACTAATC
1 TTTCAAAATTAACATTTTGGTC-ACTAA-C
477553 TTTCAAAATTAACATTTTGGTCACTAAC
1 TTTCAAAATTAACATTTTGGTCACTAAC
477581 CAAAATTTTA
Statistics
Matches: 67, Mismatches: 14, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
27 1 0.01
28 20 0.30
29 24 0.36
30 17 0.25
31 5 0.07
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (28 bp):
TTTCAAAATTAACATTTTGGTCACTAAC
Found at i:478434 original size:31 final size:31
Alignment explanation
Indices: 478396--478471 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
478386 TTGTTTTCAA
478396 GCTTATGTTATGATTAAAATCACCTAAAAAT
1 GCTTATGTTATGATTAAAATCACCTAAAAAT
*
478427 GCTTATGTGATGATTAAAATCACCTAAAAAT
1 GCTTATGTTATGATTAAAATCACCTAAAAAT
*
478458 GCTTATATT-TGATT
1 GCTTATGTTATGATT
478472 CAACCATAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.12
31 37 0.88
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (31 bp):
GCTTATGTTATGATTAAAATCACCTAAAAAT
Found at i:480770 original size:17 final size:17
Alignment explanation
Indices: 480748--480855 Score: 100
Period size: 17 Copynumber: 6.5 Consensus size: 17
480738 TAAATGAATC
*
480748 TAAAAGAAATAGTACAG
1 TAAAAGAAATAGTACAA
480765 TAAAAGTAGAA-A-TA-AA
1 TAAAAG-A-AATAGTACAA
*
480781 TAAAATAAATAGTACAA
1 TAAAAGAAATAGTACAA
* *
480798 CAAAAGAAATAGTACAG
1 TAAAAGAAATAGTACAA
* * *
480815 TAAAAG-AATAATATAG
1 TAAAAGAAATAGTACAA
480831 TAAAAGAAATAGTACAA
1 TAAAAGAAATAGTACAA
480848 T-AAAGAAA
1 TAAAAGAAA
480856 CAATACAATG
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
14 2 0.03
15 2 0.03
16 29 0.39
17 37 0.50
18 2 0.03
19 2 0.03
ACGTcount: A:0.64, C:0.05, G:0.13, T:0.19
Consensus pattern (17 bp):
TAAAAGAAATAGTACAA
Found at i:480810 original size:50 final size:49
Alignment explanation
Indices: 480749--480855 Score: 146
Period size: 50 Copynumber: 2.2 Consensus size: 49
480739 AAATGAATCT
*
480749 AAAAGAAATAGTACAGTAAAAGTAGA-AATA-AATAAAATAAATAGTACAA
1 AAAAGAAATAGTACAGTAAAAG-A-ATAATATAATAAAAGAAATAGTACAA
*
480798 CAAAAGAAATAGTACAGTAAAAGAATAATATAGTAAAAGAAATAGTACAA
1 -AAAAGAAATAGTACAGTAAAAGAATAATATAATAAAAGAAATAGTACAA
*
480848 TAAAGAAA
1 AAAAGAAA
480856 CAATACAATG
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
48 1 0.02
49 12 0.23
50 39 0.75
ACGTcount: A:0.64, C:0.05, G:0.13, T:0.18
Consensus pattern (49 bp):
AAAAGAAATAGTACAGTAAAAGAATAATATAATAAAAGAAATAGTACAA
Found at i:480832 original size:16 final size:16
Alignment explanation
Indices: 480799--480838 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
480789 ATAGTACAAC
*
480799 AAAAGAAATAGTACAGT
1 AAAAG-AATAATACAGT
*
480816 AAAAGAATAATATAGT
1 AAAAGAATAATACAGT
480832 AAAAGAA
1 AAAAGAA
480839 ATAGTACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.17
Consensus pattern (16 bp):
AAAAGAATAATACAGT
Found at i:480862 original size:16 final size:16
Alignment explanation
Indices: 480833--480883 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
480823 TAATATAGTA
* *
480833 AAAGAAATAGTACAAT
1 AAAGAAACAATACAAT
480849 AAAGAAACAATACAAT
1 AAAGAAACAATACAAT
* *
480865 GAAGGGAACAATAC-AT
1 -AAAGAAACAATACAAT
480881 AAA
1 AAA
480884 TGAGGAACAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 2 0.07
16 16 0.55
17 11 0.38
ACGTcount: A:0.63, C:0.10, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAGAAACAATACAAT
Found at i:485489 original size:33 final size:32
Alignment explanation
Indices: 485413--485495 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 32
485403 TTTTCACCCT
485413 AAACCCGAACCCGA-CCGAATACACACTTAAAA
1 AAACCCG-ACCCGACCCGAATACACACTTAAAA
**
485445 AAACCATACCCGACCCGAATATCACACTTAAAA
1 AAACCCGACCCGACCCGAATA-CACACTTAAAA
485478 AAACCCGACCCGAGCCCG
1 AAACCCGACCCGA-CCCG
485496 GAATTTTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
31 6 0.14
32 12 0.27
33 22 0.50
34 4 0.09
ACGTcount: A:0.42, C:0.37, G:0.11, T:0.10
Consensus pattern (32 bp):
AAACCCGACCCGACCCGAATACACACTTAAAA
Found at i:486942 original size:20 final size:18
Alignment explanation
Indices: 486872--486949 Score: 61
Period size: 20 Copynumber: 4.1 Consensus size: 18
486862 AAGTTTGATA
486872 TAATAATTTTT-ATAGTATT
1 TAATAATTTTTAATA--ATT
*
486891 TAGATAAATTATTAATAATT
1 TA-AT-AATTTTTAATAATT
*
486911 TTATAATCTTTTAATAAATT
1 TAATAAT-TTTTAAT-AATT
486931 TAATAAGTTTTT-ATAATT
1 TAATAA-TTTTTAATAATT
486949 T
1 T
486950 TTTAAACTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
18 8 0.16
19 12 0.24
20 19 0.39
21 7 0.14
22 3 0.06
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (18 bp):
TAATAATTTTTAATAATT
Found at i:486953 original size:30 final size:31
Alignment explanation
Indices: 486872--486954 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 31
486862 AAGTTTGATA
* *
486872 TAATAATTTTTAT-AGTATTTAGATAAATTAT
1 TAATAATTTTTATAATTTTTTA-ATAAATTAT
*
486903 TAATAA-TTTTATAATCTTTTAATAAA-T-T
1 TAATAATTTTTATAATTTTTTAATAAATTAT
486931 TAATAAGTTTTTATAATTTTTTAA
1 TAATAA-TTTTTATAATTTTTTAA
486955 ACTTTATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
28 7 0.16
29 1 0.02
30 26 0.58
31 11 0.24
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (31 bp):
TAATAATTTTTATAATTTTTTAATAAATTAT
Found at i:489646 original size:20 final size:19
Alignment explanation
Indices: 489598--489650 Score: 90
Period size: 18 Copynumber: 2.8 Consensus size: 19
489588 AGTTATAAGG
489598 ACAGTATTGATACTCTAAC
1 ACAGTATTGATACTCTAAC
489617 ACAG-ATTGATACTCTAAC
1 ACAGTATTGATACTCTAAC
489635 ACGAGTATTGATACTC
1 AC-AGTATTGATACTC
489651 CCTATTAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 16 0.50
19 6 0.19
20 10 0.31
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (19 bp):
ACAGTATTGATACTCTAAC
Found at i:495624 original size:173 final size:174
Alignment explanation
Indices: 495334--495678 Score: 624
Period size: 173 Copynumber: 2.0 Consensus size: 174
495324 AGACACCTTA
495334 CCTTATTATCTTCCTAAAGTCAAAGATGAACAAACAAAATCTTACTTAACCGATTTGCCCTGCAT
1 CCTTATTATCTTCCTAAAGTCAAAGATGAACAAACAAAATCTTACTTAACCGATTTGCCCTGCAT
*
495399 TTTCCCAAAATTTACAATCTTGCCACTTTAATCCAATAATTCAAATTAAACATGGAATTAAATCC
66 TTTCCCAAAATTTACAATCTTGCCACTTTAATCCAATAATACAAATTAAACATGGAATTAAATCC
495464 TAAAATCCAAAGATTTATATT-TTTACAACATTTTAAAATATGAC
131 TAAAATCCAAAGATTTATATTATTT-CAACATTTTAAAATATGAC
495508 CCTTATTATCTTCCTAAAGTCAAAGATGAAC-AACAAAATCTTACTTAACCGA-TTGCCCTTGCA
1 CCTTATTATCTTCCTAAAGTCAAAGATGAACAAACAAAATCTTACTTAACCGATTTGCCC-TGCA
* *
495571 TTTTCCCAAAATTTACAATCTTGCCACTTTAATCCAATGATACAAATTAAACATTGAATTAAATC
65 TTTTCCCAAAATTTACAATCTTGCCACTTTAATCCAATAATACAAATTAAACATGGAATTAAATC
495636 CTAAAATCCAAAGATTTATATTATTTCAACATTTTAAAATATG
130 CTAAAATCCAAAGATTTATATTATTTCAACATTTTAAAATATG
495679 GAAATAGTTT
Statistics
Matches: 166, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
172 6 0.04
173 126 0.76
174 34 0.20
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.34
Consensus pattern (174 bp):
CCTTATTATCTTCCTAAAGTCAAAGATGAACAAACAAAATCTTACTTAACCGATTTGCCCTGCAT
TTTCCCAAAATTTACAATCTTGCCACTTTAATCCAATAATACAAATTAAACATGGAATTAAATCC
TAAAATCCAAAGATTTATATTATTTCAACATTTTAAAATATGAC
Found at i:495926 original size:80 final size:80
Alignment explanation
Indices: 495755--495914 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
495745 CGAATTTTTC
495755 CTCAAACTTTATCACTTTATAACTTTTAATACAAAATCCGTACGAAAATTATGATTCCCACTGAA
1 CTCAAACTTTATCACTTTATAACTTTTAATACAAAATCCGTACGAAAATTATGATTCCCACTGAA
*
495820 ACGTTCTTCTTGAGA
66 ACGTTATTCTTGAGA
495835 CTCAAACTTTATCACTTTATAACTTTTAATACAAAATCCGTACGAAAATTATGATTCCCACTGAA
1 CTCAAACTTTATCACTTTATAACTTTTAATACAAAATCCGTACGAAAATTATGATTCCCACTGAA
495900 ACGTTATTCTTGAGA
66 ACGTTATTCTTGAGA
495915 TAAACCATTT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.35
Consensus pattern (80 bp):
CTCAAACTTTATCACTTTATAACTTTTAATACAAAATCCGTACGAAAATTATGATTCCCACTGAA
ACGTTATTCTTGAGA
Found at i:504074 original size:76 final size:76
Alignment explanation
Indices: 503990--504138 Score: 280
Period size: 76 Copynumber: 2.0 Consensus size: 76
503980 ATTTTTTCTA
*
503990 CGAAAAAAGCTTGGTTGATCTTATGTCGAAACCAAAAAAAGTTGCTTTCTTTTTTCGTTATTTGA
1 CGAAAAAAGCTTGGTTGATCTTATGTCGAAACCAAAAAAAATTGCTTTCTTTTTTCGTTATTTGA
504055 AACTATGACTG
66 AACTATGACTG
*
504066 CGAAAAAAGCTTGGTTGATCTTATGTCGAAACCAAAAAAAATTGCTTTCTTTTTTCTTTATTTGA
1 CGAAAAAAGCTTGGTTGATCTTATGTCGAAACCAAAAAAAATTGCTTTCTTTTTTCGTTATTTGA
504131 AACTATGA
66 AACTATGA
504139 GTTTTTATAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (76 bp):
CGAAAAAAGCTTGGTTGATCTTATGTCGAAACCAAAAAAAATTGCTTTCTTTTTTCGTTATTTGA
AACTATGACTG
Found at i:505090 original size:93 final size:94
Alignment explanation
Indices: 504790--505083 Score: 317
Period size: 94 Copynumber: 3.1 Consensus size: 94
504780 TGTTGTCTCG
* ** * * * *
504790 AAATGTCGTGAATCGATAAATAGGTCGAAAAACTTATTCATTATGAATTCTCTACTGGAAATGTT
1 AAATGCCGTGAATCGAGCAATAGGTTGAACAAGTTCTTCATTATGAATTCTCTACTGGAAATGTT
* * * * *
504855 GGTCCTTTGAGTAAGGCGT-TGTTGATTCG
66 TGTCCCTTGAGTGAGGCGTCT-CTGATTCA
* * * * *
504884 AAATACCGTGAATCGAGAAATAGGTTGAACAAGTTCTTCATTATAAATTCTGTACTAGAAAT-TT
1 AAATGCCGTGAATCGAGCAATAGGTTGAACAAGTTCTTCATTATGAATTCTCTACTGGAAATGTT
* * * * *
504948 TGGTACCTCT-AGCGAGGCATCGCTGATTAA
66 T-GTCCCT-TGAGTGAGGCGTCTCTGATTCA
* *
504978 AAATGACGTGAATCGAGCAATAGGTTGAACAAG-TCTTCATTATGAATTCTTTACTGGAAATGTT
1 AAATGCCGTGAATCGAGCAATAGGTTGAACAAGTTCTTCATTATGAATTCTCTACTGGAAATGTT
505042 TGTCCCTTGAGTGAGGCGTCTCTGATTCA
66 TGTCCCTTGAGTGAGGCGTCTCTGATTCA
505071 AAATGCCGTGAAT
1 AAATGCCGTGAAT
505084 TTAGCAAAGG
Statistics
Matches: 163, Mismatches: 32, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
92 1 0.01
93 60 0.37
94 101 0.62
95 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (94 bp):
AAATGCCGTGAATCGAGCAATAGGTTGAACAAGTTCTTCATTATGAATTCTCTACTGGAAATGTT
TGTCCCTTGAGTGAGGCGTCTCTGATTCA
Found at i:505401 original size:38 final size:36
Alignment explanation
Indices: 505267--505948 Score: 258
Period size: 38 Copynumber: 18.6 Consensus size: 36
505257 AGAGAAATTT
* *
505267 TCTCAAGCGATATGAAA-TTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGAT-AAATTTTGTTTTAAGAAAAACAA
** * **
505303 TCTTGAGTGAAATGAAATTTCTTGTTTCT-AGTAAAAACTG
1 TCTCAAGTGAGAT-AAA-TT-TTGTTT-TAAG-AAAAACAA
* * *
505343 TCTTAAGCGAGA-CAA-TTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
* * *
505377 TCTCAAGTAAGATAAAAGTTTTGTTTTGAGTGAAAAA-TA
1 TCTCAAGTGAGAT-AAA-TTTTGTTTT-A-AGAAAAACAA
* * * *
505416 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAACCAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
* ** ** *
505452 TCTCAAGTGAGACAAAATATTTGTTTGGAGGGAAACTA
1 TCTCAAGTGAGA-TAAAT-TTTGTTTTAAGAAAAACAA
* * * * **
505490 TATCAAGCGAGATGAATCTCATTTTAAGAAAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAG--AAAAACAA
* ** *
505528 TCTCAAGTGAGATTAAATTTCTGTTTCAAGTGAAACTA
1 TCTCAAGTGAGA-TAAATTT-TGTTTTAAGAAAAACAA
** * * *
505566 TCTCAAGCAAAATGAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
* * ** ** *
505602 TCACAACTGAGATAAATCTTTTGTTTCGAGTGAAACTA
1 TCTCAAGTGAGATAAA--TTTTGTTTTAAGAAAAACAA
* ** * *
505640 TCTTAAGCAAGATGAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
*
505676 TCTCAAGTGAGATAAA------TCT---AAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
** ** *
505703 TCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTA
1 TCTCAAGTGAGATAAAT-TT-TGTTTTAAGAAAAACAA
** * * ** *
505741 TCTCAAGCAAGATAAATATTTTTTGCTTCGAGTGAAACTA
1 TCTCAAGTGAGATAAAT-TTTGTT--TT-AAGAAAAACAA
* * * *
505781 TTTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
* ** ** *
505817 TCTCAAGTGAAATAAATCTTCTGTTTCGAGTGAAACGA
1 TCTCAAGTGAGATAAAT-TT-TGTTTTAAGAAAAACAA
* * * ** *
505855 TCTCAAGCGAGATAAAAATTTTGCTTCAAGTGAAACTA
1 TCTCAAGTGAGAT--AAATTTTGTTTTAAGAAAAACAA
* * *
505893 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
* *
505929 TATCGAGTGAGATAAATTTT
1 TCTCAAGTGAGATAAATTTT
505949 TGTATTAAAT
Statistics
Matches: 466, Mismatches: 141, Indels: 78
0.68 0.21 0.11
Matches are distributed among these distances:
27 24 0.05
30 2 0.00
34 16 0.03
35 14 0.03
36 135 0.29
37 25 0.05
38 160 0.34
39 33 0.07
40 57 0.12
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (36 bp):
TCTCAAGTGAGATAAATTTTGTTTTAAGAAAAACAA
Found at i:505596 original size:150 final size:148
Alignment explanation
Indices: 505362--505692 Score: 425
Period size: 150 Copynumber: 2.2 Consensus size: 148
505352 AGACAATTTG
* * ** * *
505362 TTTTAAGAAAAACAATCTCAAGTAAGATAAAAGTTTTGTTTTGAGTGAAAAATATCTCAAGCGAG
1 TTTTAAGAAAAACAATCTCAAGTGAGATTAAA-TTTTGTTTCAAGTGAAAAATATCTCAAGCAAA
* * * *
505427 ATGAATCTTGTTTTAAGAAAACCAATCTCAAGTGAGACAAAAT-ATTTGTTTGGAGGGAAACTAT
65 ATGAATCTTGTTTTAAGAAAAACAATCACAACTGAGA-AAAATCATTTGTTTCGAGGGAAACTAT
*
505491 ATCAAGCGAGATGAATCTCA
129 ATCAAGCAAGATGAATCTCA
*
505511 TTTTAAGAAAAAAACAATCTCAAGTGAGATTAAATTTCTGTTTCAAGTG-AAACTATCTCAAGCA
1 TTTTAAG--AAAAACAATCTCAAGTGAGATTAAATTT-TGTTTCAAGTGAAAAATATCTCAAGCA
* * *
505575 AAATGAATCTTGTTTTAAGAAAAACAATCACAACTGAGATAAATCTTTTGTTTCGAGTGAAACTA
63 AAATGAATCTTGTTTTAAGAAAAACAATCACAACTGAGAAAAATCATTTGTTTCGAGGGAAACTA
* * **
505640 TCTTAAGCAAGATGAATCTTG
128 TATCAAGCAAGATGAATCTCA
505661 TTTTAAGAAAAACAATCTCAAGTGAGA-TAAAT
1 TTTTAAGAAAAACAATCTCAAGTGAGATTAAAT
505693 CTAAAAACAA
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
147 5 0.03
148 20 0.13
149 11 0.07
150 91 0.57
151 32 0.20
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.31
Consensus pattern (148 bp):
TTTTAAGAAAAACAATCTCAAGTGAGATTAAATTTTGTTTCAAGTGAAAAATATCTCAAGCAAAA
TGAATCTTGTTTTAAGAAAAACAATCACAACTGAGAAAAATCATTTGTTTCGAGGGAAACTATAT
CAAGCAAGATGAATCTCA
Found at i:505692 original size:74 final size:73
Alignment explanation
Indices: 505267--505867 Score: 544
Period size: 74 Copynumber: 8.2 Consensus size: 73
505257 AGAGAAATTT
* ** *
505267 TCTCAAGCGATATGAAAT-TTGTTTTAAGAAAAACAATCTTGAGTGAAATGAAATTTCTTGTTTC
1 TCTCAAGCGAGATG-AATCTTGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAATTT-TTGTTTC
* * *
505331 TAGTAAAAACTG
63 GAGT-GAAACTA
* * * * *
505343 TCTTAAGCGAGA-CAAT-TTGTTTTAAGAAAAACAATCTCAAGTAAGATAAAAGTTTTGTTTTGA
1 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAATTTTTGTTTCGA
*
505406 GTGAAAAATA
65 GTG-AAACTA
* * * *
505416 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAACCAATCTCAAGTGAGACAAAATATTTGTTTGGA
1 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGA-TAAATTTTTGTTTCGA
*
505481 GGGAAACTA
65 GTGAAACTA
* ** *
505490 TATCAAGCGAGATGAATCTCATTTTAAGAAAAAAACAATCTCAAGTGAGATTAAATTTCTGTTTC
1 TCTCAAGCGAGATGAATCTTGTTTTAAG--AAAAACAATCTCAAGTGAGA-TAAATTTTTGTTTC
*
505555 AAGTGAAACTA
63 GAGTGAAACTA
* * * *
505566 TCTCAAGCAAAATGAATCTTGTTTTAAGAAAAACAATCACAACTGAGATAAATCTTTTGTTTCGA
1 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAT-TTTTGTTTCGA
505631 GTGAAACTA
65 GTGAAACTA
* * *
505640 TCTTAAGCAAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAA--------TCTA-
1 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTTTCGAG
* *
505696 -AAAACAA
66 TGAAACTA
* * ** ** * ** *
505703 TCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGATAAATATTTTTTGCT
1 TCTCAAGCGAGATGAATC-T-TGTTTTAAGAAAAACAATCTCAAGTGAGAT-AA-A-TTTTTGTT
505768 TCGAGTGAAACTA
61 TCGAGTGAAACTA
* * *
505781 TTTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAAATAAATCTTCTGTTTCGA
1 TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAT-TTTTGTTTCGA
*
505846 GTGAAACGA
65 GTGAAACTA
505855 TCTCAAGCGAGAT
1 TCTCAAGCGAGAT
505868 AAAAATTTTG
Statistics
Matches: 422, Mismatches: 80, Indels: 48
0.77 0.15 0.09
Matches are distributed among these distances:
63 19 0.05
64 1 0.00
65 26 0.06
66 2 0.00
67 1 0.00
73 30 0.07
74 182 0.43
75 44 0.10
76 96 0.23
77 1 0.00
78 20 0.05
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (73 bp):
TCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTTTCGAG
TGAAACTA
Found at i:505706 original size:27 final size:27
Alignment explanation
Indices: 505668--505721 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
505658 TTGTTTTAAG
505668 AAAAACAATCTCAAGTGAGATAAATCT
1 AAAAACAATCTCAAGTGAGATAAATCT
505695 AAAAACAATCTCAAGTGAGATAAATCT
1 AAAAACAATCTCAAGTGAGATAAATCT
505722 TCTGTTTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (27 bp):
AAAAACAATCTCAAGTGAGATAAATCT
Found at i:505944 original size:112 final size:114
Alignment explanation
Indices: 505695--505945 Score: 416
Period size: 112 Copynumber: 2.2 Consensus size: 114
505685 AGATAAATCT
*
505695 AAAAACAATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGATAAATAT
1 AAAAACAATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACGATCTCAAGCAAGATAAATAT
* * *
505760 TTTTTGCTTCGAGTGAAACTATTTCAAGCGAGATGAATCTTGTTTTAAG
66 ATTTTGCTTCAAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAG
* *
505809 AAAAACAATCTCAAGTGAAATAAATCTTCTGTTTCGAGTGAAACGATCTCAAGCGAGATAAA-A-
1 AAAAACAATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACGATCTCAAGCAAGATAAATAT
505872 ATTTTGCTTCAAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAG
66 ATTTTGCTTCAAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAG
* *
505921 AAAAACAATATCGAGTGAGATAAAT
1 AAAAACAATCTCAAGTGAGATAAAT
505946 TTTTGTATTA
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
112 68 0.53
113 1 0.01
114 59 0.46
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (114 bp):
AAAAACAATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACGATCTCAAGCAAGATAAATAT
ATTTTGCTTCAAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAG
Found at i:513716 original size:25 final size:25
Alignment explanation
Indices: 513652--513717 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
513642 TATATGTTGG
* *
513652 TTAGTTAT-TAATTAT-TATTACTG
1 TTAGTTATATATTTATATATTACTA
* *
513675 TTAGTTATGAT-TATATATATTATTA
1 TTAGTTAT-ATATTTATATATTACTA
513700 TTAGTTATATATTTATAT
1 TTAGTTATATATTTATAT
513718 GATATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 8 0.24
24 5 0.15
25 21 0.62
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (25 bp):
TTAGTTATATATTTATATATTACTA
Found at i:515511 original size:13 final size:13
Alignment explanation
Indices: 515493--515518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
515483 TTAGTCCTTA
515493 TTTAATCTCCATT
1 TTTAATCTCCATT
515506 TTTAATCTCCATT
1 TTTAATCTCCATT
515519 ATTTTTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTAATCTCCATT
Found at i:524905 original size:2 final size:2
Alignment explanation
Indices: 524898--524922 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
524888 TGTTTGTGTT
524898 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
524923 TATTAACTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:525111 original size:25 final size:25
Alignment explanation
Indices: 525047--525112 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
525037 TATATGTTGG
* *
525047 TTAGTTAT-TAATTAT-TATTAATG
1 TTAGTTATATATTTATATATTAATA
* *
525070 TTAGTTATGAT-TATATATATTATTA
1 TTAGTTAT-ATATTTATATATTAATA
525095 TTAGTTATATATTTATAT
1 TTAGTTATATATTTATAT
525113 TCTATATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 8 0.24
24 5 0.15
25 21 0.62
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (25 bp):
TTAGTTATATATTTATATATTAATA
Found at i:526902 original size:12 final size:12
Alignment explanation
Indices: 526887--526940 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
526877 TTCACATATA
*
526887 TATATATATATG
1 TATATATGTATG
*
526899 TATATGCATGTAGG
1 TATAT--ATGTATG
526913 TATATATGTATG
1 TATATATGTATG
* *
526925 TATGTATGTATA
1 TATATATGTATG
526937 TATA
1 TATA
526941 AAATCTTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 24 0.71
14 10 0.29
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (12 bp):
TATATATGTATG
Found at i:526924 original size:20 final size:21
Alignment explanation
Indices: 526891--526939 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
526881 CATATATATA
526891 TATATATGTATATGCATGTAGG
1 TATATATG-ATATGCATGTAGG
* *
526913 TATATATG-TATGTATGTATG
1 TATATATGATATGCATGTAGG
526933 TATATAT
1 TATATAT
526940 AAAATCTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 17 0.68
22 8 0.32
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (21 bp):
TATATATGATATGCATGTAGG
Found at i:529626 original size:76 final size:77
Alignment explanation
Indices: 529517--529671 Score: 213
Period size: 76 Copynumber: 2.0 Consensus size: 77
529507 TGGAGTATGA
* * * * *
529517 TGGTTATCGATCGATTTTATTTAATGCATATGTTGGATTTTTGTATCAGTACCTTTGTGTACTTT
1 TGGTTATCGAACGAATTTATTTAATGCATATGTTGCATTTTTGTATCAATACCCTTGTGTACTTT
529582 CGACACTATGTG
66 CGACACTATGTG
* *
529594 TGGTTATCGAAC-AATTTGTTTCATGCATATGTTGCATTTTTGTATCAATACCCTTGTGTACTTT
1 TGGTTATCGAACGAATTTATTTAATGCATATGTTGCATTTTTGTATCAATACCCTTGTGTACTTT
* * *
529658 TGGCACTATTTG
66 CGACACTATGTG
529670 TG
1 TG
529672 CATGCATGGT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
76 57 0.84
77 11 0.16
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.46
Consensus pattern (77 bp):
TGGTTATCGAACGAATTTATTTAATGCATATGTTGCATTTTTGTATCAATACCCTTGTGTACTTT
CGACACTATGTG
Found at i:534192 original size:2 final size:2
Alignment explanation
Indices: 534185--534223 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
534175 TAAATTTTAT
534185 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
534224 TTGAATAACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:540126 original size:7 final size:7
Alignment explanation
Indices: 540114--540143 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
540104 CCTCTATTCT
540114 TTTTTCC
1 TTTTTCC
540121 TTTTTCC
1 TTTTTCC
540128 TTTTTCC
1 TTTTTCC
540135 TTTTTCC
1 TTTTTCC
540142 TT
1 TT
540144 ATACCAGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCC
Found at i:547122 original size:3 final size:3
Alignment explanation
Indices: 547114--547240 Score: 137
Period size: 3 Copynumber: 42.0 Consensus size: 3
547104 ATTTTCATTT
* * * *
547114 TTA TTA TTA TTA TTA TAA TTA TTT TTT TTA TTA TTA TTAA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
** * * * * **
547160 TTA TTA TTA TTA TTA AAA TTA TTA TAA TAA TAA TAA TTA TTA AAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
547208 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
547241 ATAAATAAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
3 105 0.98
4 2 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:548598 original size:19 final size:20
Alignment explanation
Indices: 548571--548621 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
548561 ATGTATTTTA
* *
548571 TGCACCGATGCACAG-GTAG
1 TGCATCGATGCACAGTGCAG
* *
548590 TGCATCGATACACTGTGCAG
1 TGCATCGATGCACAGTGCAG
548610 TGCATCGATGCA
1 TGCATCGATGCA
548622 TACCTTCATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (20 bp):
TGCATCGATGCACAGTGCAG
Found at i:549221 original size:31 final size:31
Alignment explanation
Indices: 549183--549247 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
549173 AGAGTCGAGG
*
549183 GTTTACCTATG-TCTTTCGAGACATATGGACA
1 GTTTACCTAGGTTC-TTCGAGACATATGGACA
* *
549214 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTAGGTTCTTCGAGACATATGGACA
549245 GTT
1 GTT
549248 ACCGAGGATC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTCGAGACATATGGACA
Found at i:549334 original size:29 final size:30
Alignment explanation
Indices: 549233--549331 Score: 155
Period size: 30 Copynumber: 3.3 Consensus size: 30
549223 GGTTCTTCGG
*
549233 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
549263 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
* * *
549293 GACCTCTGGATAGTTACCG-GGGTCTTTGT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
549322 GACCTCTGGA
1 GACCTCTGGA
549332 TAGGTCCTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
29 18 0.28
30 47 0.72
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (30 bp):
GACCTCTGGACAGTTACCGAGGATCTTTAT
Found at i:549639 original size:2 final size:2
Alignment explanation
Indices: 549604--549631 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
549594 GTATGCGTGG
549604 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
549632 GAATATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:550841 original size:64 final size:64
Alignment explanation
Indices: 550695--550850 Score: 156
Period size: 64 Copynumber: 2.4 Consensus size: 64
550685 GAAGGTGTAT
* *** * * *
550695 CGATGCACAAGTAGTGCATCGATGCACTCTTTTAATCTAAAAACATCGAATGTAATTGGTGCAT
1 CGATGCACAGGTAGTGCATCGATGCACTCCAATAATCAAAAAACATCGAATGTAATTGATGCAC
* * * *
550759 CGATGCATAAGGCA-TGCATCGATGCA-TCCCAATAAT-AAACAAACATCGAATGTATTTTATGC
1 CGATGCA-CAGGTAGTGCATCGATGCACT-CCAATAATCAAA-AAACATCGAATGTAATTGATGC
550821 AC
63 AC
*
550823 CGATGCACAGGTAGTGCATCGATACACT
1 CGATGCACAGGTAGTGCATCGATGCACT
550851 GTGCAGTGCA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
63 7 0.10
64 62 0.85
65 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (64 bp):
CGATGCACAGGTAGTGCATCGATGCACTCCAATAATCAAAAAACATCGAATGTAATTGATGCAC
Found at i:550845 original size:19 final size:20
Alignment explanation
Indices: 550818--550868 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
550808 ATGTATTTTA
* *
550818 TGCACCGATGCACAG-GTAG
1 TGCATCGATGCACAGTGCAG
* *
550837 TGCATCGATACACTGTGCAG
1 TGCATCGATGCACAGTGCAG
550857 TGCATCGATGCA
1 TGCATCGATGCA
550869 TACCTTCATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (20 bp):
TGCATCGATGCACAGTGCAG
Found at i:551491 original size:31 final size:31
Alignment explanation
Indices: 551433--551510 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
551423 AGAGTCGAGG
*
551433 GTTTACCTATGTCTTTCGAGACATATGGACA
1 GTTTACCTAGGTCTTTCGAGACATATGGACA
* * *
551464 GTTTACCTAGGT-TCTTCGGGACCTATGGATA
1 GTTTACCTAGGTCT-TTCGAGACATATGGACA
*
551495 G-TTACCGAGGATCTTT
1 GTTTACCTAGG-TCTTT
551511 ATGACTCTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
30 9 0.23
31 29 0.74
32 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGACATATGGACA
Found at i:551581 original size:29 final size:30
Alignment explanation
Indices: 551483--551583 Score: 143
Period size: 29 Copynumber: 3.4 Consensus size: 30
551473 GGTTCTTCGG
*
551483 GACCTATGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
* *
551513 GA-CTCTTGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
* *
551542 GACCTCTGGATAGTTACCG-GGGTCTTTGT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
551571 GACCTCTGGATAG
1 GACCTCTGGATAG
551584 GTCCTTCGGG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
29 47 0.75
30 16 0.25
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:557590 original size:6 final size:6
Alignment explanation
Indices: 557579--557637 Score: 77
Period size: 6 Copynumber: 9.8 Consensus size: 6
557569 AAAAAGAGAA
*
557579 AAAAAG AAAAAG -AAAA- AAGAAG AAAAAG AAAAAG AAAAAG AAAAAGG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA-G
557626 AAAGAAG AAAAA
1 AAA-AAG AAAAA
557638 ATTGAATCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 7 0.15
6 30 0.64
7 8 0.17
8 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:557590 original size:16 final size:16
Alignment explanation
Indices: 557569--557637 Score: 72
Period size: 16 Copynumber: 4.3 Consensus size: 16
557559 TTCATCAGAA
557569 AAAAAGAGAAAAAAAG
1 AAAAAGAGAAAAAAAG
557585 AAAAAGA-AAAAAGAAG
1 AAAAAGAGAAAAA-AAG
*
557601 AAAAAGAAAAAGAAAAAG
1 AAAAAG-AGAA-AAAAAG
*
557619 AAAAAG-G-AAAGAAG
1 AAAAAGAGAAAAAAAG
557633 AAAAA
1 AAAAA
557638 ATTGAATCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.21
15 6 0.13
16 16 0.34
17 1 0.02
18 11 0.23
19 3 0.06
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAGAGAAAAAAAG
Found at i:560075 original size:75 final size:76
Alignment explanation
Indices: 559987--560126 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 76
559977 TGAGGCATGT
* **
559987 TGAAAGACCATTTCAATCAGAAATT-GGAATATTG-ATTCATTTTAAACGTTTGTATCAACAAAT
1 TGAAAGACCATTTCAATCA-AAATTAGGAATATTGAATACATTTTAAACGTTCATATCAACAAAT
560050 GCTAGGGAATGC
65 GCTAGGGAATGC
* * * *
560062 TGAAAGCCCATTTCAATCAAAATTAGGAATTTTGAATACATTTTGAACGTTCATATCAGCAAATG
1 TGAAAGACCATTTCAATCAAAATTAGGAATATTGAATACATTTTAAACGTTCATATCAACAAATG
560127 TTGGGGCATG
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
74 5 0.09
75 26 0.46
76 25 0.45
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (76 bp):
TGAAAGACCATTTCAATCAAAATTAGGAATATTGAATACATTTTAAACGTTCATATCAACAAATG
CTAGGGAATGC
Found at i:560148 original size:76 final size:75
Alignment explanation
Indices: 559968--560148 Score: 206
Period size: 76 Copynumber: 2.4 Consensus size: 75
559958 ATCAACAAGA
* *
559968 AGCAAATGTTGAGGCATGTTGAAAGA-CCATTTCAATCAGAAATTGGAATATTGATTCATTTTAA
1 AGCAAATGTTGGGGCATGTTG-AAGACCCATTTCAATCAGAAATTGGAATATTGATACATTTTAA
**
560032 ACGTTTGTATC
65 ACGTTCATATC
* * * * * *
560043 AACAAATGCTAGGGAATGCTGAA-AGCCCATTTCAATCA-AAATTAGGAATTTTGAATACATTTT
1 AGCAAATGTTGGGGCATGTTGAAGA-CCCATTTCAATCAGAAATT-GGAATATTG-ATACATTTT
*
560106 GAACGTTCATATC
63 AAACGTTCATATC
560119 AGCAAATGTTGGGGCATGTTGAAGACCCAT
1 AGCAAATGTTGGGGCATGTTGAAGACCCAT
560149 ATTATCTTAT
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
73 1 0.01
74 7 0.08
75 35 0.41
76 41 0.48
77 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (75 bp):
AGCAAATGTTGGGGCATGTTGAAGACCCATTTCAATCAGAAATTGGAATATTGATACATTTTAAA
CGTTCATATC
Found at i:561156 original size:54 final size:53
Alignment explanation
Indices: 560999--561156 Score: 219
Period size: 54 Copynumber: 2.9 Consensus size: 53
560989 GAGAAATCTG
* * *
560999 GGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACATTT
1 GGCAAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACCTCT
* *
561052 GTGCAGAAA-CCACATGAAAGGATGAATATGTTGTCAAATGTTTTACAAACCTCT
1 G-GCA-AAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACCTCT
* *
561106 GGACAAAAGCCACAGGAAATGATGAACGTGTTGTCAAATGTTTTACAAACC
1 GG-CAAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACC
561157 ATGATTATAA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
53 5 0.05
54 85 0.92
55 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (53 bp):
GGCAAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACAAACCTCT
Found at i:562385 original size:76 final size:76
Alignment explanation
Indices: 562254--562683 Score: 691
Period size: 76 Copynumber: 5.7 Consensus size: 76
562244 CTTCAGTGCA
* **
562254 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAATTCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
562319 CGGGAGCTTTT
66 CGGGAGCTTTT
*
562330 TTATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
* **
562395 TGGGAATTTTT
66 CGGGAGCTTTT
562406 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
*
562471 CGGGAGGTTTT
66 CGGGAGCTTTT
562482 TGATATTTTCAAAGCC-TCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
*
562546 CGGGAGGTTTT
66 CGGGAGCTTTT
* *
562557 TGATATTTTCAAAGCCTTCGGGTTATCTGTAAGGCCTTCAGTGCATGATGTTTTCAAAAAAGCCT
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAAAGCCT
*
562622 TTGGGAGCTTTT
65 TCGGGAGCTTTT
* * * * *
562634 TGATATTTTCAAAGCCTTCGGGTAATCAGTAAGACCTACAGTGCAAGATG
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATG
562684 ATAAGACCTC
Statistics
Matches: 332, Mismatches: 20, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
75 75 0.23
76 193 0.58
77 64 0.19
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (76 bp):
TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTT
CGGGAGCTTTT
Found at i:563131 original size:3 final size:3
Alignment explanation
Indices: 563123--563148 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
563113 TTTCATTTTT
563123 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
563149 TAATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:563157 original size:3 final size:3
Alignment explanation
Indices: 563151--563212 Score: 88
Period size: 3 Copynumber: 20.3 Consensus size: 3
563141 ATAATAATTA
** *
563151 ATT ATT ATT ATT AAA ATT ATT AGT ATT ATT ATT ATT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
563197 ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
563213 ATAAATAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:564527 original size:11 final size:11
Alignment explanation
Indices: 564470--564529 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 11
564460 TTATTTACAA
564470 TATTATTTTAT
1 TATTATTTTAT
564481 TATTACTTTTGA-
1 TATTA-TTTT-AT
* *
564493 TA-TATTTAAA
1 TATTATTTTAT
564503 TATTATTTTCAT
1 TATTATTTT-AT
564515 TATTATTTTAT
1 TATTATTTTAT
564526 TATT
1 TATT
564530 CAAATATTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
9 1 0.02
10 5 0.12
11 18 0.44
12 16 0.39
13 1 0.02
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:564721 original size:148 final size:149
Alignment explanation
Indices: 564549--564931 Score: 447
Period size: 148 Copynumber: 2.5 Consensus size: 149
564539 GTTTAAATAA
*
564549 TAATATTTATTTATTTTTTAATATTAAGAAAGGGAAGTCTTAATATAACTAGATGTCGTATTCTG
1 TAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAA-ATAACTAGATGTC-TATTCTG
*
564614 GTATTTTAAATAAATAAATAT-T-ATAAAAAT-TATATATATTTAATTTAATTTAAATTATTTTT
64 ATATTTTAAATAAATAAATATCTCATAAAAATGTATATATATTT-ATTTAATTTAAATTATTTTT
564676 TAGGAAAA-ATTATCA-CATT-T
128 TAGGAAAATATTAT-ATCATTAT
* * *
564696 TCAATATTTATTTATTTTTTAATATTAAGAAAGAGCGGTCTTAAAATAACTAGACGTTCTATTCT
1 T-AATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTT-AAATAACTAGATG-TCTATTCT
* * * **
564761 GATATTTTAAA-AAATAAATATCCTGCTTATAAATGTATATATATTTATTTAGTTTGTATTATTT
63 GATATTTTAAATAAATAAATAT-CT-CATAAAAATGTATATATATTTATTTAATTTAAATTATTT
*
564825 TTTAGGAAAATTATTATATTATTAT
126 TTTAGGAAAA-TATTATATCATTAT
* * * * *
564850 TAATATTTATTTATTTATTAATATTAAAGAAAAGGCAGTATTAAAGCAACTAGATGTCATTTTCT
1 TAATATTTATTTATTTTTTAATATT-AAGAAAGGGCAGTCTTAAA-TAACTAGATGTC-TATTCT
564915 GATATTTTTAAATAAAT
63 GATA-TTTTAAATAAAT
564932 GTCTTATTTA
Statistics
Matches: 200, Mismatches: 19, Indels: 25
0.82 0.08 0.10
Matches are distributed among these distances:
147 11 0.05
148 63 0.31
149 5 0.03
151 31 0.16
152 12 0.06
153 36 0.18
154 31 0.16
155 7 0.04
156 4 0.02
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (149 bp):
TAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAAATAACTAGATGTCTATTCTGAT
ATTTTAAATAAATAAATATCTCATAAAAATGTATATATATTTATTTAATTTAAATTATTTTTTAG
GAAAATATTATATCATTAT
Found at i:574003 original size:21 final size:21
Alignment explanation
Indices: 573977--574040 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
573967 TTTTTGTGCA
*
573977 GAGGGAATCGATCCCCCCCAT
1 GAGGGAACCGATCCCCCCCAT
* **
573998 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATCCCCCCCAT
*
574019 GAAGAGGAACCGATTCCCCCCA
1 G-AG-GGAACCGATCCCCCCCA
574041 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.51
22 2 0.06
23 15 0.43
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATCCCCCCCAT
Found at i:587479 original size:18 final size:19
Alignment explanation
Indices: 587421--587473 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
587411 TGAAAATGAT
*
587421 TTTC-TTTTGAAAGAAAAAA
1 TTTCATTTTGAAA-AACAAA
587440 TTGT-ATTTTGAAAAACAAA
1 TT-TCATTTTGAAAAACAAA
587459 TTTCATTTTGAAAAA
1 TTTCATTTTGAAAAA
587474 TGATTTAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.03
19 20 0.67
20 9 0.30
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (19 bp):
TTTCATTTTGAAAAACAAA
Found at i:588853 original size:20 final size:18
Alignment explanation
Indices: 588788--588854 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 18
588778 AGTTTATCAA
*
588788 AAAGTTTCGATACTTT-T
1 AAAGTTTCGAAACTTTCT
*
588805 CAAGAGTTTCGAAACTATCT
1 -AA-AGTTTCGAAACTTTCT
588825 AAAGTGTTTCGAAACTTTCCCT
1 AAA--GTTTCGAAACTTT--CT
588847 AAAGTTTC
1 AAAGTTTC
588855 AATACTTTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
18 3 0.08
19 14 0.35
20 18 0.45
22 5 0.12
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (18 bp):
AAAGTTTCGAAACTTTCT
Found at i:593704 original size:19 final size:20
Alignment explanation
Indices: 593680--593725 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
593670 AGAAAATGGC
593680 TCAATTTC-ACACTCCAACA
1 TCAATTTCAACACTCCAACA
*
593699 TCAATTTCAACACTCTAACA
1 TCAATTTCAACACTCCAACA
*
593719 TTAATTT
1 TCAATTT
593726 ACAGTATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (20 bp):
TCAATTTCAACACTCCAACA
Found at i:595713 original size:21 final size:21
Alignment explanation
Indices: 595678--595736 Score: 100
Period size: 21 Copynumber: 2.7 Consensus size: 21
595668 GAGTTTTGAG
595678 ACCATATAGATATAGTGTCACTA
1 ACCATAT--ATATAGTGTCACTA
595701 ACCATATATATAGTGTCACTA
1 ACCATATATATAGTGTCACTA
595722 ACCATATATATAGTG
1 ACCATATATATAGTG
595737 GTGTTGTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 29 0.81
23 7 0.19
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
ACCATATATATAGTGTCACTA
Found at i:598338 original size:34 final size:35
Alignment explanation
Indices: 598258--598341 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 35
598248 TACTCTAAGT
* ** * *
598258 GTCTTTGGTATACACTCTAGTGTTTTGTACAATGT
1 GTCTTTGCTATACACTCTAGTGTCATGCACAATGG
*
598293 GTCTTTGCTATACACTCTAGTG-CATGCACTATGG
1 GTCTTTGCTATACACTCTAGTGTCATGCACAATGG
*
598327 GTCTTTTCTATACAC
1 GTCTTTGCTATACAC
598342 ACTAATGCTA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 21 0.50
35 21 0.50
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.42
Consensus pattern (35 bp):
GTCTTTGCTATACACTCTAGTGTCATGCACAATGG
Found at i:599795 original size:19 final size:20
Alignment explanation
Indices: 599771--599816 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
599761 CAAAATGGCC
*
599771 CAATTTC-ACACTCTAACAT
1 CAATTTCAACACCCTAACAT
599790 CAATTTCAACACCCTAACAT
1 CAATTTCAACACCCTAACAT
*
599810 TAATTTC
1 CAATTTC
599817 TAGAATAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (20 bp):
CAATTTCAACACCCTAACAT
Found at i:600952 original size:12 final size:12
Alignment explanation
Indices: 600935--600992 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
600925 TAATATATAG
600935 TTTTGAAAACAT
1 TTTTGAAAACAT
600947 TTTTGAAAACAT
1 TTTTGAAAACAT
* * * *
600959 ATAT-AATATATAG
1 TTTTGAA-A-ACAT
600972 TTTTGAAAACAT
1 TTTTGAAAACAT
600984 TTTTGAAAA
1 TTTTGAAAA
600993 TGTATATAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
11 2 0.06
12 26 0.74
13 5 0.14
14 2 0.06
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (12 bp):
TTTTGAAAACAT
Found at i:600971 original size:37 final size:37
Alignment explanation
Indices: 600863--601145 Score: 360
Period size: 37 Copynumber: 7.7 Consensus size: 37
600853 TATAATGATC
* * *
600863 TTGAAAACATTTTTTGAAAATATACAAAATATATAGTT
1 TTGAAAACA-TTTTTGAAAACATATATAATATATAGTT
* * *
600901 TTGAAAACATTTTT-TAAGCGTATATAATATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
600937 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
**
600974 TTGAAAACATTTTTGAAAATGTATATAATATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
*
601011 TTGGAAACATTTTTGAAAACATATATAATATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
* *
601048 TTGAAAACATTGTTGAAAAC--GTATAATATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAATATATAGTT
* * *
601083 TT-TAAATATCTTTGAAAACATATAT-ATAATATAGTT
1 TTGAAAACATTTTTGAAAACATATATAAT-ATATAGTT
*
601119 TTGAAAATGTATTTTTGAAAACATATA
1 TTGAAAA--CATTTTTGAAAACATATA
601146 ATATATGCAG
Statistics
Matches: 214, Mismatches: 24, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
34 13 0.06
35 18 0.08
36 43 0.20
37 114 0.53
38 9 0.04
39 17 0.08
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (37 bp):
TTGAAAACATTTTTGAAAACATATATAATATATAGTT
Found at i:601308 original size:13 final size:13
Alignment explanation
Indices: 601279--601326 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
601269 TTGGTTTTCG
601279 TTTTTTATTTTTA
1 TTTTTTATTTTTA
*
601292 TTTTTTATTATT-
1 TTTTTTATTTTTA
**
601304 TTTTTCCTTTTTA
1 TTTTTTATTTTTA
*
601317 TTTTTCATTT
1 TTTTTTATTT
601327 AATCAGGTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:606252 original size:46 final size:46
Alignment explanation
Indices: 605977--606251 Score: 417
Period size: 46 Copynumber: 6.0 Consensus size: 46
605967 TGCCTTAATG
* * * *
605977 CATCCTTTCATGACATAATGTATCCTTTTATGCATTTCATTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
* *
606023 CATCCATTCATGCCTTAATGCATCCTTTCATGTATTTCATTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
* * * *
606069 CATCATTCCATGCCTTAATGCATCATTTCATGCACTTT-ATTTATGT
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCA-TTTCATTTATGA
*
606115 CATCCTTTCATGCCTTAATGCACCCTTTCATGCATTTCATTTATGA
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
* *
606161 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGG
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
606207 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATG
1 CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATG
606252 GATTCATTTT
Statistics
Matches: 206, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 3 0.01
46 200 0.97
47 3 0.01
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (46 bp):
CATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTCATTTATGA
Found at i:620519 original size:25 final size:29
Alignment explanation
Indices: 620491--620559 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
620481 ATGTAATTTG
620491 TAATATATATATATTTAATAATAAATAATAA
1 TAATATAT-TATA-TTAATAATAAATAATAA
*
620522 TAATATATTATATTAATAAT-AATTATAA
1 TAATATATTATATTAATAATAAATAATAA
*
620550 TTAT-TATTAT
1 TAATATATTAT
620560 GAAAAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
27 6 0.17
28 10 0.28
29 8 0.22
30 4 0.11
31 8 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TAATATATTATATTAATAATAAATAATAA
Found at i:620542 original size:22 final size:22
Alignment explanation
Indices: 620514--620558 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
620504 TTTAATAATA
620514 AATAATAATAATATATTA-TATT
1 AATAATAATAATA-ATTATTATT
*
620536 AATAATAATTATAATTATTATT
1 AATAATAATAATAATTATTATT
620558 A
1 A
620559 TGAAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AATAATAATAATAATTATTATT
Found at i:621192 original size:76 final size:76
Alignment explanation
Indices: 620707--621165 Score: 841
Period size: 76 Copynumber: 6.0 Consensus size: 76
620697 GGTCTTATGA
* *
620707 ATGACCCCG-AGGGTTTAAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 ATGA-CCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
*
620771 CAGGACTTACAG
65 AAGGACTTACAG
*
620783 ATGACCCTG-AGGATTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 ATGACCC-GAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
620847 AAGGACTTACAG
65 AAGGACTTACAG
620859 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
620924 AGGACTTACAG
66 AGGACTTACAG
*
620935 ATGACCTGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
621000 AGGACTTACAG
66 AGGACTTACAG
621011 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
621076 AGGACTTACAG
66 AGGACTTACAG
621087 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
621152 AGGACTTACAG
66 AGGACTTACAG
621163 ATG
1 ATG
621166 TGAGAAATAG
Statistics
Matches: 375, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
75 4 0.01
76 371 0.99
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
AGGACTTACAG
Found at i:621866 original size:22 final size:22
Alignment explanation
Indices: 621841--621895 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
621831 CATAAAGCTT
621841 TCATCTTTGAAAAGAAAATCTA
1 TCATCTTTGAAAAGAAAATCTA
* * *
621863 TCATCTTTAAAAAGAAAATTTT
1 TCATCTTTGAAAAGAAAATCTA
*
621885 TCATCTCTGAA
1 TCATCTTTGAA
621896 GTGAGAATCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAAAATCTA
Found at i:622367 original size:59 final size:54
Alignment explanation
Indices: 622284--622443 Score: 194
Period size: 59 Copynumber: 2.9 Consensus size: 54
622274 TAATCACTGG
* * * *
622284 TTCGTAAAACATTTGACAATACATTCATCTTTTCCTGTGGTTTCTGCTCGGATTA
1 TTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGA-TA
* ** *
622339 TTGGTCAAGGAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTATTCAGATG
1 TTCGT-AA--AA-CATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGATA
*
622397 TTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGGCTTCTGC
1 TTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGC
622444 CAAGATTTCT
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
54 35 0.39
55 6 0.07
56 2 0.02
57 2 0.02
58 7 0.08
59 37 0.42
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
TTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGATA
Found at i:624662 original size:114 final size:114
Alignment explanation
Indices: 624451--624676 Score: 371
Period size: 114 Copynumber: 2.0 Consensus size: 114
624441 GATCATGCAG
* *
624451 TTCACCTTTCAATTCCAATGATTAGTTCTGGGGTTCACACCAAACCAGATCAGATAACTCAAAGA
1 TTCACCTTTCAAATCCAATGATTAGTTCTGGGATTCACACCAAACCAGATCAGATAACTCAAAGA
* *
624516 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATCTCTACTATGAGCAAA
* * * *
624565 TTCATCTTTCAAATCCAATGATTGGTTTTGGGATTCATACCAAACCAGATCAGATAACTCAAAGA
1 TTCACCTTTCAAATCCAATGATTAGTTCTGGGATTCACACCAAACCAGATCAGATAACTCAAAGA
*
624630 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATCTCTACTATGAGCA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATCTCTACTATGAGCA
624677 CATGACACTT
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (114 bp):
TTCACCTTTCAAATCCAATGATTAGTTCTGGGATTCACACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTCCTTATCTCTACTATGAGCAAA
Found at i:627085 original size:2 final size:2
Alignment explanation
Indices: 627078--627125 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
627068 ACAACAAAGG
627078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
627120 AT AT AT
1 AT AT AT
627126 TAAAGGATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:633943 original size:16 final size:16
Alignment explanation
Indices: 633887--633936 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
633877 ATATATATAT
633887 ATATATATATATTTAATA
1 ATATAT-TATA-TTAATA
*
633905 ATA-A--ATAATAATA
1 ATATATTATATTAATA
633918 ATATATTATATTAATA
1 ATATATTATATTAATA
633934 ATA
1 ATA
633937 ATTTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 8 0.30
14 4 0.15
16 11 0.41
17 1 0.04
18 3 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATATATTATATTAATA
Found at i:638299 original size:15 final size:15
Alignment explanation
Indices: 638267--638300 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
638257 AAGAAAAAAG
**
638267 ATGAAGATTAAGGCA
1 ATGAAGATTAAGAAA
638282 ATGAAGATTAAGAAA
1 ATGAAGATTAAGAAA
638297 ATGA
1 ATGA
638301 TAAACAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.24, T:0.21
Consensus pattern (15 bp):
ATGAAGATTAAGAAA
Found at i:641756 original size:15 final size:15
Alignment explanation
Indices: 641736--641766 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
641726 GCTATTTTTC
*
641736 CCTCTCAATGGTAAT
1 CCTCTCAAGGGTAAT
641751 CCTCTCAAGGGTAAT
1 CCTCTCAAGGGTAAT
641766 C
1 C
641767 TTGTAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (15 bp):
CCTCTCAAGGGTAAT
Found at i:648348 original size:30 final size:32
Alignment explanation
Indices: 648323--648381 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
648313 TAGGGCCTGA
*
648323 GAGCCTACCTAAGAA-A-GTTTTAGGGCCACG
1 GAGCCTACCTAAGAACACATTTTAGGGCCACG
*
648353 GGGCCTACCTAAGAACACATTTTAGGGCC
1 GAGCCTACCTAAGAACACATTTTAGGGCC
648382 GCAAGGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 14 0.56
31 1 0.04
32 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.20
Consensus pattern (32 bp):
GAGCCTACCTAAGAACACATTTTAGGGCCACG
Found at i:648390 original size:32 final size:30
Alignment explanation
Indices: 648325--648393 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 30
648315 GGGCCTGAGA
* **
648325 GCCTACCTAAGAAAGTTTTAGGGCCACGGG
1 GCCTACCTAAGAAAATTTTAGGGCCACAAG
*
648355 GCCTACCTAAGAACACATTTTAGGGCCGCAAG
1 GCCTACCTAAGAA-A-ATTTTAGGGCCACAAG
648387 GCCTACC
1 GCCTACC
648394 CGAGAATGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 13 0.39
31 1 0.03
32 19 0.58
ACGTcount: A:0.28, C:0.29, G:0.25, T:0.19
Consensus pattern (30 bp):
GCCTACCTAAGAAAATTTTAGGGCCACAAG
Found at i:655113 original size:17 final size:17
Alignment explanation
Indices: 655091--655123 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
655081 GGACGTCGAA
655091 AAAAAATACGACTTTTC
1 AAAAAATACGACTTTTC
*
655108 AAAAAATATGACTTTT
1 AAAAAATACGACTTTT
655124 TGGTCAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
AAAAAATACGACTTTTC
Found at i:661653 original size:18 final size:18
Alignment explanation
Indices: 661627--661663 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
661617 GTAATAAAGT
661627 TAATAATAATCCTCCTAC
1 TAATAATAATCCTCCTAC
*
661645 TAATGATAATCCTCCTAC
1 TAATAATAATCCTCCTAC
661663 T
1 T
661664 CAGCCTGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (18 bp):
TAATAATAATCCTCCTAC
Found at i:665355 original size:25 final size:25
Alignment explanation
Indices: 665319--665368 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
665309 CTCATGCATA
665319 CAATCACAGGTTAACATTCTAACAT
1 CAATCACAGGTTAACATTCTAACAT
*
665344 CAATCACTGGTTAACATTCTAACAT
1 CAATCACAGGTTAACATTCTAACAT
665369 TCTCCCCGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (25 bp):
CAATCACAGGTTAACATTCTAACAT
Found at i:666905 original size:33 final size:33
Alignment explanation
Indices: 666867--666933 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
666857 TTTGTAATGC
666867 ATGAACTTTAGCTTGAACAACTTCTTTCCAGCT
1 ATGAACTTTAGCTTGAACAACTTCTTTCCAGCT
666900 ATGAACTTTAGCTTGAACAACTTCTTTCCAGCT
1 ATGAACTTTAGCTTGAACAACTTCTTTCCAGCT
666933 A
1 A
666934 GAAGTCTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (33 bp):
ATGAACTTTAGCTTGAACAACTTCTTTCCAGCT
Found at i:669892 original size:25 final size:25
Alignment explanation
Indices: 669855--669903 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
669845 CTCATGTATA
669855 CAATCACGTGTTAACATTCTAACAT
1 CAATCACGTGTTAACATTCTAACAT
669880 CAATCACAG-GTTAACATTCTAACA
1 CAATCAC-GTGTTAACATTCTAACA
669904 CTCTATAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (25 bp):
CAATCACGTGTTAACATTCTAACAT
Found at i:673436 original size:33 final size:37
Alignment explanation
Indices: 673376--673447 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 37
673366 TTATATTTTC
673376 ATAATAATATTATTTAATATTTAAATA-TATTTACTA
1 ATAATAATATTATTTAATATTTAAATATTATTTACTA
* *
673412 ATAATAATATTA-TT-AT-TTTTAATATTATTTTCTA
1 ATAATAATATTATTTAATATTTAAATATTATTTACTA
673446 AT
1 AT
673448 GCTTATAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 7 0.21
34 12 0.36
35 2 0.06
36 12 0.36
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (37 bp):
ATAATAATATTATTTAATATTTAAATATTATTTACTA
Found at i:673519 original size:23 final size:24
Alignment explanation
Indices: 673493--673546 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
673483 TAATAATGTG
* *
673493 TAATATTATTTTATTTTATT-TTT
1 TAATATTATATTATTTTATTCATT
**
673516 TAATAGAATATTATTTTATTCATT
1 TAATATTATATTATTTTATTCATT
673540 TAATATT
1 TAATATT
673547 TAATATAGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TAATATTATATTATTTTATTCATT
Found at i:673919 original size:26 final size:26
Alignment explanation
Indices: 673876--673936 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
673866 AATAATAAAC
* * * *
673876 TATATTAATTATATTAATAATTTATTA
1 TATATT-ATTAAAATAATAATATAATA
673903 TATATTATTAAAATAATAATATAATA
1 TATATTATTAAAATAATAATATAATA
*
673929 TATTTTAT
1 TATATTAT
673937 ATTATATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
TATATTATTAAAATAATAATATAATA
Found at i:674948 original size:127 final size:127
Alignment explanation
Indices: 674722--674973 Score: 391
Period size: 127 Copynumber: 2.0 Consensus size: 127
674712 ACTTAATTTT
* * * *
674722 GGTGGTCAATTTTAAAATATTGCAAACACTGTTTCCAGATTCGAAATCCCTAGAAAGATTAGGTA
1 GGTGGTCAATTTGAAAATAATGCAAAAACTGTTTCCAGATTCGAAATCCCTAGAAAGATCAGGTA
* *
674787 TCAACTGACAATTAGACCAAAAATTCTTTAAATACTATTCTCACTCTTCTTCCTCCACCCGC
66 TCAACTGACAATTAGACCAAAAATTATTTAAATACTATTCTCACTCTTCTTCCCCCACCCGC
**
674849 GGTGGTCAATTTGAAAATAATG-AAAAACTTGTTTCCAGATTCGAAATCCCTAGAAATCTCAGAG
1 GGTGGTCAATTTGAAAATAATGCAAAAAC-TGTTTCCAGATTCGAAATCCCTAGAAAGATCAG-G
*
674913 -ATCAACTGACAATTAGACTAAAAATTATTTAAATACTATTCTCACTCTTCTTCCCCCACCC
64 TATCAACTGACAATTAGACCAAAAATTATTTAAATACTATTCTCACTCTTCTTCCCCCACCC
674974 CCGCACGGCC
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
126 5 0.04
127 108 0.95
128 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (127 bp):
GGTGGTCAATTTGAAAATAATGCAAAAACTGTTTCCAGATTCGAAATCCCTAGAAAGATCAGGTA
TCAACTGACAATTAGACCAAAAATTATTTAAATACTATTCTCACTCTTCTTCCCCCACCCGC
Found at i:680415 original size:3 final size:3
Alignment explanation
Indices: 680401--680430 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
680391 ATACCATGCA
*
680401 ATT ATG ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
680431 TTGAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:684529 original size:19 final size:20
Alignment explanation
Indices: 684495--684572 Score: 79
Period size: 19 Copynumber: 3.9 Consensus size: 20
684485 AAAGAAAGTA
684495 AAAACAGAAGAAAAAAAGAGAG
1 AAAACAG-A-AAAAAAAGAGAG
*
684517 AAAACA-AAAAAAAAAAGAG
1 AAAACAGAAAAAAAAGAGAG
* *
684536 AAAACAGAAGAAAATGAGA-
1 AAAACAGAAAAAAAAGAGAG
*
684555 AAAAAAGAAGAAAAAAGA
1 AAAACAGAA-AAAAAAGA
684573 AAATAGACAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 25 0.53
20 16 0.34
22 6 0.13
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAACAGAAAAAAAAGAGAG
Found at i:684539 original size:29 final size:29
Alignment explanation
Indices: 684506--684573 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
684496 AAACAGAAGA
684506 AAAAAAGAGAGAAAA-CA-AAAAAAAAAAG
1 AAAAAAGA-AGAAAATCAGAAAAAAAAAAG
* *
684534 AGAAAACAGAAGAAAATGAGAAAAAAAGAAG
1 A-AAAA-AGAAGAAAATCAGAAAAAAAAAAG
684565 AAAAAAGAA
1 AAAAAAGAA
684574 AATAGACAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
28 1 0.03
29 14 0.41
30 8 0.24
31 11 0.32
ACGTcount: A:0.78, C:0.03, G:0.18, T:0.01
Consensus pattern (29 bp):
AAAAAAGAAGAAAATCAGAAAAAAAAAAG
Found at i:686651 original size:43 final size:43
Alignment explanation
Indices: 686590--686773 Score: 278
Period size: 43 Copynumber: 4.3 Consensus size: 43
686580 AGAAACCACA
* *
686590 CTTGAGGGACCATTGTGATATGTAGGGGTTCCTTGATGACAAG
1 CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGACAAG
*
686633 CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGATAAG
1 CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGACAAG
* * * *
686676 TTTGAGGGACTATCGTGATATGTAGGGGTTCTTTGAAGACAAG
1 CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGACAAG
* *
686719 CTTGAGGGACCATCGTGATATGTAAGGGTTCCTTAAGGACAAG
1 CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGACAAG
*
686762 TTTGAGGGACCA
1 CTTGAGGGACCA
686774 GGTTTCTTGA
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 126 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.29
Consensus pattern (43 bp):
CTTGAGGGACCATCGTGATATGTAGGGGTTCCTTGAGGACAAG
Found at i:686838 original size:42 final size:43
Alignment explanation
Indices: 686774--686909 Score: 141
Period size: 42 Copynumber: 3.2 Consensus size: 43
686764 TGAGGGACCA
*
686774 GGTTTCTTGAAGAAAAACTTGAGAGACCATTGTGATATGTA-G
1 GGTTTCTTGAAGAAAAACTTGAGAGACCATCGTGATATGTAGG
* * ** *
686816 GGTTTCTTGAGGACAAGTTTGAGGGACCATCGTGATATGTAGG
1 GGTTTCTTGAAGAAAAACTTGAGAGACCATCGTGATATGTAGG
* * * * * *
686859 GGTTCCTTGATG-AACACTTAAGGGACCAACGTGATATGTAGG
1 GGTTTCTTGAAGAAAAACTTGAGAGACCATCGTGATATGTAGG
*
686901 GGTTCCTTG
1 GGTTTCTTG
686910 GTGACAACTA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 68 0.86
43 11 0.14
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (43 bp):
GGTTTCTTGAAGAAAAACTTGAGAGACCATCGTGATATGTAGG
Found at i:687002 original size:22 final size:22
Alignment explanation
Indices: 686976--687023 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
686966 CGGGCCATTA
686976 GTAAGTCTTTCGAGCATGATGC
1 GTAAGTCTTTCGAGCATGATGC
686998 GTAAGTCTTTCGAGCATGATGC
1 GTAAGTCTTTCGAGCATGATGC
687020 GTAA
1 GTAA
687024 TTCATTCGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (22 bp):
GTAAGTCTTTCGAGCATGATGC
Found at i:687031 original size:22 final size:22
Alignment explanation
Indices: 686976--687073 Score: 85
Period size: 22 Copynumber: 4.5 Consensus size: 22
686966 CGGGCCATTA
*
686976 GTAAGTCTTTCGAGCATGATGC
1 GTAAGTCATTCGAGCATGATGC
*
686998 GTAAGTCTTTCGAGCATGATGC
1 GTAAGTCATTCGAGCATGATGC
* * *
687020 GTAATTCATTCGGGC--CAT-C
1 GTAAGTCATTCGAGCATGATGC
* * *
687039 TATAAGTCTTTCGAGCATGATGT
1 -GTAAGTCATTCGAGCATGATGC
*
687062 TTAAGTCATTCG
1 GTAAGTCATTCG
687074 GGTCATCCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.02
20 13 0.22
22 46 0.77
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (22 bp):
GTAAGTCATTCGAGCATGATGC
Found at i:687045 original size:42 final size:42
Alignment explanation
Indices: 686999--687080 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
686989 GCATGATGCG
*
686999 TAAGTCTTTCGAGCATGATGCGTAATTCATTCGGGCCATCTA
1 TAAGTCTTTCGAGCATGATGCGTAAGTCATTCGGGCCATCTA
** *
687041 TAAGTCTTTCGAGCATGATGTTTAAGTCATTCGGGTCATC
1 TAAGTCTTTCGAGCATGATGCGTAAGTCATTCGGGCCATC
687081 CATATGAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (42 bp):
TAAGTCTTTCGAGCATGATGCGTAAGTCATTCGGGCCATCTA
Found at i:687216 original size:90 final size:90
Alignment explanation
Indices: 687063--687364 Score: 507
Period size: 90 Copynumber: 3.4 Consensus size: 90
687053 GCATGATGTT
* * * * *
687063 TAAGTCATTCGGGTCATCCATATGAACTTCAATGCAGGATATTTTCAAATGAGATTTAAGAAACT
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATATTTTCAAATGAGATTTAAGAAACT
687128 AAGCCTTCGGGGGTTTCTTGATTTG
66 AAGCCTTCGGGGGTTTCTTGATTTG
* *
687153 TAAGTCCTTCAGGCCATCCATAAGACCTTCAGTGCAGGATGTTTTCAAATGAGATTTAAGAAACT
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATATTTTCAAATGAGATTTAAGAAACT
687218 AAGCCTTCGGGGGTTTCTTGATTTG
66 AAGCCTTCGGGGGTTTCTTGATTTG
* *
687243 TAAGTCCTTCTGGCCAACCATAAGACCTTCAGTGCAGGATATTTTCAAATGAGATTTTAA-AAAC
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATATTTTCAAATGAGA-TTTAAGAAAC
687307 TAAGCCTTCGGGGGTTTCTTGATTTG
65 TAAGCCTTCGGGGGTTTCTTGATTTG
687333 TAAGTCCTTCGGGCCATCCATAAGACCTTCAG
1 TAAGTCCTTCGGGCCATCCATAAGACCTTCAG
687365 ACAGGATGTG
Statistics
Matches: 199, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
90 194 0.97
91 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (90 bp):
TAAGTCCTTCGGGCCATCCATAAGACCTTCAGTGCAGGATATTTTCAAATGAGATTTAAGAAACT
AAGCCTTCGGGGGTTTCTTGATTTG
Found at i:687392 original size:42 final size:41
Alignment explanation
Indices: 687331--687444 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 41
687321 TTTCTTGATT
*
687331 TGTAAGTCCTTCGGGCCATCCATAAGACCTTC-A-GACAGGATG
1 TGTAAGTCCTTC-AGCCATCCATAAGACCTTCGAGGA-A-GATG
* * * *
687373 TGTAAGTCCTTCATACCATCTATAAGTCTTTCGAGGAAGATG
1 TGTAAGTCCTTCA-GCCATCCATAAGACCTTCGAGGAAGATG
*
687415 -ATAAGTCCTTCGAGCCATCCATAAGACCTT
1 TGTAAGTCCTTC-AGCCATCCATAAGACCTT
687445 AGGGCAGGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
41 23 0.40
42 31 0.53
43 2 0.03
44 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (41 bp):
TGTAAGTCCTTCAGCCATCCATAAGACCTTCGAGGAAGATG
Found at i:687705 original size:35 final size:36
Alignment explanation
Indices: 687666--687734 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
687656 TCGAAACGAG
*
687666 TTTTGTCTCTCGTGAGACAG-TTCACTTGAAACAAA
1 TTTTGTATCTCGTGAGACAGTTTCACTTGAAACAAA
* * *
687701 TTTTGTATTTCTTGAGACAGTTTCTCTTGAAACA
1 TTTTGTATCTCGTGAGACAGTTTCACTTGAAACA
687735 CAAAATCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 17 0.59
36 12 0.41
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (36 bp):
TTTTGTATCTCGTGAGACAGTTTCACTTGAAACAAA
Found at i:687776 original size:29 final size:27
Alignment explanation
Indices: 687712--687800 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 27
687702 TTTGTATTTC
*
687712 TTGAGACAGTTTCTCTTGAAACACAAAATCT
1 TTGA-ACAGTTTCCCTTG-AA-ACAAAAT-T
687743 TTGAACCAGTTTCCCTTGAAACAAAATT
1 TTGAA-CAGTTTCCCTTGAAACAAAATT
*
687771 GTTGAATATGTTTCCCTTGAAACAAAATT
1 -TTGAACA-GTTTCCCTTGAAACAAAATT
687800 T
1 T
687801 GTCTCCCTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.06
29 32 0.60
30 3 0.06
31 15 0.28
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (27 bp):
TTGAACAGTTTCCCTTGAAACAAAATT
Found at i:694029 original size:91 final size:91
Alignment explanation
Indices: 693873--694049 Score: 318
Period size: 91 Copynumber: 1.9 Consensus size: 91
693863 CACTCGAGGG
* *
693873 ATCAACATTTTCAGTAGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAATAAGCTCAT
1 ATCAACATTTTCAGTAAAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGCTCAT
693938 AATGAGAAGAACTTGTTCAACCTTGA
66 AATGAGAAGAACTTGTTCAACCTTGA
* *
693964 ATCAATATTTTCAGTAAAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCAT
1 ATCAACATTTTCAGTAAAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGCTCAT
694029 AATGAGAAGAACTTGTTCAAC
66 AATGAGAAGAACTTGTTCAAC
694050 ATTAGCTCGA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 82 1.00
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (91 bp):
ATCAACATTTTCAGTAAAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGCTCAT
AATGAGAAGAACTTGTTCAACCTTGA
Found at i:694176 original size:230 final size:230
Alignment explanation
Indices: 693773--694191 Score: 721
Period size: 230 Copynumber: 1.8 Consensus size: 230
693763 GTTTTCAACA
* * *
693773 CATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTTGATTCATCGC
1 CATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCATCAC
* * *
693838 ATATGGAGTTGAATCAACAACACCTCACTCGAGGGATCAACATTTTCAGTAGAGAGTTCATAATG
66 ATATAGAGTTGAATCAACAACACCTCACTCGAGGGATCAACATTCTCAGTAGAAAGTTCATAATG
** *
693903 AGAAGAACTCATCCAATGAGGGAGAATAAGCTCATAATGAGAAGAACTTGTTCAACCTTGAATCA
131 AGAAGAACTCATCCAATGAGAAAGAAGAAGCTCATAATGAGAAGAACTTGTTCAACCTTGAATCA
693968 ATATTTTCAGTAAAGAGTTCATAATGAGAAGAACT
196 ATATTTTCAGTAAAGAGTTCATAATGAGAAGAACT
694003 CATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCATCAC
1 CATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCATCAC
* *
694068 ATATAGAGTTGAATCAGCAACACCTCACTCGAGGGATCAACATTCTCAGTAGAAAGTTTATAATG
66 ATATAGAGTTGAATCAACAACACCTCACTCGAGGGATCAACATTCTCAGTAGAAAGTTCATAATG
* *
694133 AGAAGAACTCATCCGATGAGAAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT
131 AGAAGAACTCATCCAATGAGAAAGAAGAAGCTCATAATGAGAAGAACTTGTTCAACCTT
694192 AACTTGTTTC
Statistics
Matches: 176, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
230 176 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (230 bp):
CATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACATTAGCTCGATTCATCAC
ATATAGAGTTGAATCAACAACACCTCACTCGAGGGATCAACATTCTCAGTAGAAAGTTCATAATG
AGAAGAACTCATCCAATGAGAAAGAAGAAGCTCATAATGAGAAGAACTTGTTCAACCTTGAATCA
ATATTTTCAGTAAAGAGTTCATAATGAGAAGAACT
Found at i:704002 original size:89 final size:88
Alignment explanation
Indices: 703867--704029 Score: 211
Period size: 89 Copynumber: 1.8 Consensus size: 88
703857 CAGCCAAAAA
* * * * * *
703867 TAAAATCAAATGATTAGTTCCTTTCGTTATTGGATTGTCAAAATTAAAATCAAAGAATTAGTTCC
1 TAAAATCAAAGGATTAGTTCCTTTCATTATTGGATTGTAAAAATTAAAATAAAAGAATTAGTGCA
703932 TTTTGATTACTCAGTGCTGAAAT
66 TTTTGATTACTCAGTGCTGAAAT
* * * *
703955 TAAAATCAAAGGATTATTTCTTTTTTATTATTGG-TTGTGAAAAATTAAAATAAAAGGATTAGTG
1 TAAAATCAAAGGATTAGTTC-CTTTCATTATTGGATTGT-AAAAATTAAAATAAAAGAATTAGTG
704019 CATTTTGATTA
64 CATTTTGATTA
704030 TTGGGTTGCT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
88 22 0.35
89 41 0.65
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (88 bp):
TAAAATCAAAGGATTAGTTCCTTTCATTATTGGATTGTAAAAATTAAAATAAAAGAATTAGTGCA
TTTTGATTACTCAGTGCTGAAAT
Found at i:704011 original size:45 final size:45
Alignment explanation
Indices: 703862--704049 Score: 134
Period size: 44 Copynumber: 4.2 Consensus size: 45
703852 CACCCCAGCC
* * * * * * *
703862 AAAAATAAAATCAAATGATTAGTTCCTTTCG-TTATTGGATTG-T
1 AAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
* * * * * **
703905 CAAAATTAAAATCAAAGAATTAGTTCCTTTTGATTACTCAG-TGCT
1 -AAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
* * * * * *
703950 GAAATTAAAATCAAAGGATTATTTCTTTTTTATTATT-GGTTG-T
1 AAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
703993 GAAAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
1 --AAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
704040 AAAATTAAAA
1 AAAATTAAAA
704050 GATTATTTCC
Statistics
Matches: 116, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.02
44 62 0.53
45 46 0.40
46 5 0.04
47 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (45 bp):
AAAATTAAAATAAAAGGATTAGTGCATTTTGATTATTGGGTTGCT
Found at i:704347 original size:59 final size:57
Alignment explanation
Indices: 704224--704439 Score: 288
Period size: 58 Copynumber: 3.7 Consensus size: 57
704214 ACTTTGTAAG
* * * * * *
704224 GAAAATAAATTGTTTAATTTATTTCCTTGTGAATCTTGAATGATTCTAATTTTATAA
1 GAAAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTTTATTTTTAAAA
* *
704281 GAAAAATAAATCGTTGAATTTATTTTTCTTGAGAATCTTGAATGATTTTATCTTTTAAAA
1 G-AAAATAAATTGTTAAATTTA-TTTTCTTGAGAATCTTGAATGATTTTAT-TTTTAAAA
* * *
704341 GTAAATAAATTGTTAAATTTATTTTATTGAGAATCTTAAATGATTTTATTTTGTAAAA
1 GAAAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTTTATTTT-TAAAA
*
704399 GGAAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAAT
1 GAAAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAAT
704440 AAAGAGACAA
Statistics
Matches: 140, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
57 4 0.03
58 87 0.62
59 41 0.29
60 8 0.06
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (57 bp):
GAAAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTTTATTTTTAAAA
Found at i:704375 original size:117 final size:115
Alignment explanation
Indices: 704226--704439 Score: 304
Period size: 117 Copynumber: 1.8 Consensus size: 115
704216 TTTGTAAGGA
* * * *
704226 AAATAAATTGTTTAATTTATTTCCTTGTGAATCTTGAATGATTCTAATTTTATAAGAA-AAATAA
1 AAATAAATTGTTAAATTTATTTCATTGAGAATCTTAAATGATT-TAATTTTATAA-AAGAAATAA
*
704290 ATCGTTGAATTTATTTTTCTTGAGAATCTTGAATGATTTTATCTTTTAAAAGT
64 ATCGTTAAATTTA-TTTTCTTGAGAATCTTGAATGATTTTATCTTTTAAAAGT
* * *
704343 AAATAAATTGTTAAATTTATTTTATTGAGAATCTTAAATGATTTTATTTTGTAAAAGGAAATAAA
1 AAATAAATTGTTAAATTTATTTCATTGAGAATCTTAAATGATTTAATTTTATAAAA-GAAATAAA
*
704408 TTGTTAAATTTATTTTCTTGAGAATCTTGAAT
65 TCGTTAAATTTATTTTCTTGAGAATCTTGAAT
704440 AAAGAGACAA
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
115 2 0.02
116 29 0.34
117 55 0.64
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (115 bp):
AAATAAATTGTTAAATTTATTTCATTGAGAATCTTAAATGATTTAATTTTATAAAAGAAATAAAT
CGTTAAATTTATTTTCTTGAGAATCTTGAATGATTTTATCTTTTAAAAGT
Found at i:704577 original size:56 final size:58
Alignment explanation
Indices: 704502--704638 Score: 147
Period size: 58 Copynumber: 2.4 Consensus size: 58
704492 GTTTAAAAGG
** * * *
704502 AAATAAATTTTTGAATTTATTTT-CTGT-GA-ATCTTATATGATTTTGGTTTGTAAAA-A
1 AAATAAATAGTTGAATTTATTTTACTGTGGATAT-TTA-ATGATTCTAGTTTGAAAAATA
* *
704558 AAATAAATAGTTGAATTTATTTTATTGTGGATATTTAATGATTCTATTTTGAAAAATA
1 AAATAAATAGTTGAATTTATTTTACTGTGGATATTTAATGATTCTAGTTTGAAAAATA
**
704616 AAATAAACCGTTGAATTTATTTT
1 AAATAAATAGTTGAATTTATTTT
704639 TCTATTTTGT
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 21 0.31
57 18 0.26
58 27 0.40
59 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (58 bp):
AAATAAATAGTTGAATTTATTTTACTGTGGATATTTAATGATTCTAGTTTGAAAAATA
Found at i:704642 original size:39 final size:39
Alignment explanation
Indices: 704599--704677 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
704589 TATTTAATGA
* * *
704599 TTCTATTTTGAAAAATAAAATAAACCGTTGAATTTATTT
1 TTCTATTTTGAAAAAGAAAATAAACCATTAAATTTATTT
* * *
704638 TTCTATTTTGTAAAAGGAAATAAATCATTAAATTTATTT
1 TTCTATTTTGAAAAAGAAAATAAACCATTAAATTTATTT
704677 T
1 T
704678 CTTGTGAATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.46
Consensus pattern (39 bp):
TTCTATTTTGAAAAAGAAAATAAACCATTAAATTTATTT
Found at i:704768 original size:58 final size:58
Alignment explanation
Indices: 704638--704768 Score: 140
Period size: 58 Copynumber: 2.3 Consensus size: 58
704628 GAATTTATTT
* *** *
704638 TTCTATTTTGTAAAAGGAAATAAATCATTAAATTTATTTTCTTGTGAATCTTATATAA
1 TTCTATATTGTAAAAGGAAATAAATCATTAAATTTATTTTCTTAAAAATCTGATATAA
* * * *
704696 TTC-AGGATTGTAAAAGGAAATAAATCGTTGAATTTATTTTCTTAAAAATTCTGA-ATGA
1 TTCTA-TATTGTAAAAGGAAATAAATCATTAAATTTATTTTCTTAAAAA-TCTGATATAA
*
704754 TTCTATATTATAAAA
1 TTCTATATTGTAAAA
704769 AAATAATTCA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
57 1 0.02
58 53 0.90
59 5 0.08
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.43
Consensus pattern (58 bp):
TTCTATATTGTAAAAGGAAATAAATCATTAAATTTATTTTCTTAAAAATCTGATATAA
Found at i:712320 original size:60 final size:60
Alignment explanation
Indices: 712208--712321 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
712198 ATAGTCATGT
* *
712208 GACCATTTCGTAACTTTTAATAGTCGAGAGACTCAACAAAATAACATCATATAGTTGGAA
1 GACCATTTCGTAACTTTTAACAGTCGAGAGACTCAACAAAATAACATAATATAGTTGGAA
* * *
712268 GACCATTAT-GTAACTTTTAACAGTCGAGATATTCAACAAAA-AGCTATAATATAG
1 GACCATT-TCGTAACTTTTAACAGTCGAGAGACTCAACAAAATAAC-ATAATATAG
712322 AAACCATCTG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.04
60 44 0.94
61 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (60 bp):
GACCATTTCGTAACTTTTAACAGTCGAGAGACTCAACAAAATAACATAATATAGTTGGAA
Found at i:718354 original size:30 final size:30
Alignment explanation
Indices: 718315--718375 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
718305 GTCCCAAAGG
*
718315 ACCTATCCATATGTTCCGAAGAACATAGGT
1 ACCTATCCATATGTCCCGAAGAACATAGGT
* *
718345 ACCTGTCCATATGTCCCGAAGGACATAGGT
1 ACCTATCCATATGTCCCGAAGAACATAGGT
718375 A
1 A
718376 ACCCTCGACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (30 bp):
ACCTATCCATATGTCCCGAAGAACATAGGT
Found at i:723042 original size:14 final size:14
Alignment explanation
Indices: 723025--723057 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
723015 ATTTCTATGT
*
723025 AGGGAATTATTTGC
1 AGGGAATTATTTAC
723039 AGGGAATTATTTAC
1 AGGGAATTATTTAC
723053 AGGGA
1 AGGGA
723058 TTACTCCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (14 bp):
AGGGAATTATTTAC
Found at i:723283 original size:12 final size:12
Alignment explanation
Indices: 723266--723295 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
723256 GGAATCAGGG
723266 TTTTGTTGTTGT
1 TTTTGTTGTTGT
723278 TTTTGTTGTTGT
1 TTTTGTTGTTGT
*
723290 TGTTGT
1 TTTTGT
723296 AATATTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73
Consensus pattern (12 bp):
TTTTGTTGTTGT
Found at i:724851 original size:90 final size:90
Alignment explanation
Indices: 724739--724916 Score: 302
Period size: 90 Copynumber: 2.0 Consensus size: 90
724729 ATATCCCGAA
* * * *
724739 TATTTAATTTCAATTAATTAAATATAAATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAAATTTAATTAATATGAAATAATAAAAACCCTAATATGAT
724804 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
*
724829 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATATGAAATAATAAAAACCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAAATTTAATTAATATGAAATAATAAAAACCCTAATATGAT
*
724894 TAGGGTAACTTGGCTATAAAAGG
66 TAGGGTAACTTGGATATAAAAGG
724917 GTATGTTAGG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.37
Consensus pattern (90 bp):
TATTAAATTCCAATTAATTAAATATAAATTTAATTAATATGAAATAATAAAAACCCTAATATGAT
TAGGGTAACTTGGATATAAAAGGAT
Found at i:731700 original size:90 final size:90
Alignment explanation
Indices: 731577--731844 Score: 448
Period size: 90 Copynumber: 3.0 Consensus size: 90
731567 TAATCCCGAA
* * * *
731577 TATTTAATTTCAATTTATTAAATATAGATTTAATTAATTTGAAATAATAAAATTCCTAATATGAT
1 TATTAAATTACAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
731642 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
*
731667 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTACAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
*
731732 TAGGGTAACTTGAATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
* *
731757 TATTAAATTACAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAAACCCTAATATGAT
1 TATTAAATTACAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
731822 TAGGGTAACTT-GACTATAAAAGG
66 TAGGGTAACTTGGA-TATAAAAGG
731845 GTGAGTTAGG
Statistics
Matches: 168, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
89 1 0.01
90 167 0.99
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (90 bp):
TATTAAATTACAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
TAGGGTAACTTGGATATAAAAGGAT
Found at i:734961 original size:16 final size:16
Alignment explanation
Indices: 734940--734992 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
734930 ATGACCTATC
734940 CATATGTTCCGAAGAA
1 CATATGTTCCGAAGAA
* * **
734956 CATATGTACC--TGTC
1 CATATGTTCCGAAGAA
734970 CATATGTTCCGAAGAA
1 CATATGTTCCGAAGAA
734986 CATATGT
1 CATATGT
734993 ACCTCTCCAT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
14 10 0.37
16 17 0.63
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (16 bp):
CATATGTTCCGAAGAA
Found at i:734972 original size:30 final size:30
Alignment explanation
Indices: 734933--735019 Score: 147
Period size: 30 Copynumber: 2.9 Consensus size: 30
734923 GTTCCGAATG
734933 ACCTATCCATATGTTCCGAAGAACATATGT
1 ACCTATCCATATGTTCCGAAGAACATATGT
*
734963 ACCTGTCCATATGTTCCGAAGAACATATGT
1 ACCTATCCATATGTTCCGAAGAACATATGT
* *
734993 ACCTCTCCATATGTTCCGAAGGACATA
1 ACCTATCCATATGTTCCGAAGAACATA
735020 GGTAACCCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (30 bp):
ACCTATCCATATGTTCCGAAGAACATATGT
Found at i:741484 original size:13 final size:13
Alignment explanation
Indices: 741466--741500 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
741456 ATTAACGAGA
741466 GTCATAAATCTGT
1 GTCATAAATCTGT
*
741479 GTCATAAATGTGT
1 GTCATAAATCTGT
*
741492 ATCATAAAT
1 GTCATAAAT
741501 ACGCGTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (13 bp):
GTCATAAATCTGT
Found at i:748007 original size:6 final size:6
Alignment explanation
Indices: 747998--748031 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
747988 CTTAGCCGCA
*
747998 AATTCA AATTCG AATTCG AATTCG AATTCG AATT
1 AATTCG AATTCG AATTCG AATTCG AATTCG AATT
748032 TAGGAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (6 bp):
AATTCG
Found at i:748119 original size:23 final size:25
Alignment explanation
Indices: 748067--748120 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
748057 TTAGTTCAAA
748067 CATTTTCTTTAGGAATTATCTTTTG
1 CATTTTCTTTAGGAATTATCTTTTG
*
748092 TATTTTC-TTA-GAATTAT-TTTTAG
1 CATTTTCTTTAGGAATTATCTTTT-G
748115 CATTTT
1 CATTTT
748121 TAGGGGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 4 0.15
23 13 0.50
24 3 0.12
25 6 0.23
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.59
Consensus pattern (25 bp):
CATTTTCTTTAGGAATTATCTTTTG
Found at i:750702 original size:9 final size:9
Alignment explanation
Indices: 750688--750786 Score: 90
Period size: 10 Copynumber: 10.3 Consensus size: 9
750678 GCTGCTGGAA
750688 ACCGGTTTG
1 ACCGGTTTG
*
750697 ACCGGTTTTCA
1 ACCGG-TTT-G
750708 ACCGGTTCTG
1 ACCGGTT-TG
750718 ACCGGTTTG
1 ACCGGTTTG
*
750727 ACCGGTTTCA
1 ACCGGTTT-G
*
750737 ACCGGTTCG
1 ACCGGTTTG
750746 AACCGGTTTG
1 -ACCGGTTTG
*
750756 ACCGGTCTG
1 ACCGGTTTG
*
750765 AATCGGTTTG
1 -ACCGGTTTG
*
750775 ACCGGTCTG
1 ACCGGTTTG
750784 ACC
1 ACC
750787 CGACCCGACC
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
9 33 0.45
10 34 0.47
11 6 0.08
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:750732 original size:19 final size:19
Alignment explanation
Indices: 750688--750786 Score: 89
Period size: 19 Copynumber: 5.2 Consensus size: 19
750678 GCTGCTGGAA
* *
750688 ACCGGTTTGACCGGTTTTCA
1 ACCGGTTTGACCGGTTCT-G
750708 ACCGGTTCTGACCGGTT-TG
1 ACCGGTT-TGACCGGTTCTG
*
750727 ACCGGTTTCAACCGGTTC-G
1 ACCGGTTT-GACCGGTTCTG
750746 AACCGGTTTGACCGG-TCTG
1 -ACCGGTTTGACCGGTTCTG
*
750765 AATCGGTTTGACCGG-TCTG
1 -ACCGGTTTGACCGGTTCTG
750784 ACC
1 ACC
750787 CGACCCGACC
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
18 5 0.07
19 39 0.57
20 16 0.23
21 9 0.13
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.29
Consensus pattern (19 bp):
ACCGGTTTGACCGGTTCTG
Found at i:750750 original size:29 final size:30
Alignment explanation
Indices: 750687--750786 Score: 127
Period size: 29 Copynumber: 3.4 Consensus size: 30
750677 GGCTGCTGGA
750687 AACCGGTTTGACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
750718 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
* * *
750746 AACCGGTTTGACCGGTCTGAATCGGTT-TG
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
*
750775 -ACCGGTCTGACC
1 AACCGGTTTGACC
750787 CGACCCGACC
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
28 12 0.19
29 37 0.59
30 14 0.22
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:750809 original size:22 final size:22
Alignment explanation
Indices: 750783--750825 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
750773 TGACCGGTCT
750783 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
750805 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
750826 GTTGACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.49, G:0.23, T:0.09
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:750846 original size:7 final size:7
Alignment explanation
Indices: 750815--750845 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
750805 GACCCGACCC
750815 GACCGTT
1 GACCGTT
750822 GACCGTT
1 GACCGTT
750829 GACCGTT
1 GACCGTT
*
750836 GACTGTT
1 GACCGTT
750843 GAC
1 GAC
750846 TTTCTTTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (7 bp):
GACCGTT
Found at i:751765 original size:31 final size:32
Alignment explanation
Indices: 751718--751798 Score: 92
Period size: 32 Copynumber: 2.6 Consensus size: 32
751708 TGTGACTCTT
* * *
751718 AGGTAGGCTCTGCGGCCCTGAGAT-TATTCTC
1 AGGTAGGCCCTACGGCCCTAAGATGTATTCTC
* * *
751749 GGGTAGGCCCTACGGCCCTAAGATGTGTTCTT
1 AGGTAGGCCCTACGGCCCTAAGATGTATTCTC
*
751781 AGGTAGGCCCCACGGCCC
1 AGGTAGGCCCTACGGCCC
751799 CGAAATCTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 20 0.49
32 21 0.51
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (32 bp):
AGGTAGGCCCTACGGCCCTAAGATGTATTCTC
Done.