Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008166.1 Hibiscus syriacus cultivar Beakdansim tig00110747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2544747
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 10
Found at i:1866326 original size:30 final size:30
Alignment explanation
Indices: 1866203--1866349 Score: 96
Period size: 30 Copynumber: 4.8 Consensus size: 30
1866193 ATATACAATG
* * * *
1866203 AGTGTCCTTACATACCACAGTGCTCCACTG
1 AGTGTCCTTACACACCACAGTGTTGCACTA
** * * **
1866233 AGCATCCTTACACACTACAGTGATGTTCTA
1 AGTGTCCTTACACACCACAGTGTTGCACTA
* * *
1866263 AGTGTCCTTACACACTATAGTACCATATGCACTA
1 AGTGTCCTTACACACCACAGT---GT-TGCACTA
*
1866297 AGTGTCCTTACACACCATAGTGTTGCACTA
1 AGTGTCCTTACACACCACAGTGTTGCACTA
* * * *
1866327 AATTTCCTCACACACTACAGTGT
1 AGTGTCCTTACACACCACAGTGT
1866350 CAATCCGATT
Statistics
Matches: 90, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
30 64 0.71
31 1 0.01
34 25 0.28
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (30 bp):
AGTGTCCTTACACACCACAGTGTTGCACTA
Found at i:1869731 original size:15 final size:16
Alignment explanation
Indices: 1869702--1869731 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1869692 CCGCTTTACA
1869702 CTAAATCATGTTCAAT
1 CTAAATCATGTTCAAT
1869718 CTAAATCA-GTTCAA
1 CTAAATCATGTTCAA
1869732 AAGACACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (16 bp):
CTAAATCATGTTCAAT
Found at i:1878502 original size:20 final size:20
Alignment explanation
Indices: 1878477--1878519 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1878467 TCAAAATCAT
*
1878477 TTTTCAAAATTTC-ATTTTGC
1 TTTTCAAAA-TCCAATTTTGC
1878497 TTTTCAAAATCCAATTTTGC
1 TTTTCAAAATCCAATTTTGC
1878517 TTT
1 TTT
1878520 CAAGAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTCAAAATCCAATTTTGC
Found at i:1882424 original size:18 final size:20
Alignment explanation
Indices: 1882379--1882424 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
1882369 TAAAATATAT
1882379 TTTAATA-TAGTAATATTTA
1 TTTAATACTAGTAATATTTA
1882398 TTT-ATACTA-TAA-ATTTA
1 TTTAATACTAGTAATATTTA
1882415 TTTAATACTA
1 TTTAATACTA
1882425 ATTATAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 12 0.48
19 5 0.20
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTAATACTAGTAATATTTA
Found at i:1887212 original size:65 final size:65
Alignment explanation
Indices: 1887131--1887259 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
1887121 AATTTCTTCA
*
1887131 CCAAACATATACCTCTTAAAATGGAGACTCTTCATGGATAGCCACCTTAATGAAAGATCACAATT
1 CCAAAAATATACCTCTTAAAATGGAGACTCTTCATGGATAGCCACCTTAATGAAAGATCACAATT
* * ** *
1887196 CCAAAAATGTACCTCTTGAAATGGAGACTCTTCATGGATATTCACCTTAATGAAAGGTCACAAT
1 CCAAAAATATACCTCTTAAAATGGAGACTCTTCATGGATAGCCACCTTAATGAAAGATCACAAT
1887260 GCTTGGAGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (65 bp):
CCAAAAATATACCTCTTAAAATGGAGACTCTTCATGGATAGCCACCTTAATGAAAGATCACAATT
Found at i:1889105 original size:41 final size:41
Alignment explanation
Indices: 1889068--1889286 Score: 206
Period size: 41 Copynumber: 5.3 Consensus size: 41
1889058 ATCATGACCA
* *
1889068 AATTGAATT-AGATTATGGATTATTGCATGCTGCCATGATTG
1 AATTGAATTGA-ATTATGAATTATTGCATGCTGCCATGATCG
* *
1889109 AATTGAATTGAATAATGAATTATTGCATGTTGCCATGATCG
1 AATTGAATTGAATTATGAATTATTGCATGCTGCCATGATCG
* * * *
1889150 AATTGAGTTGAATTGTGAAGTATTGCATGCTACCATGATCG
1 AATTGAATTGAATTATGAATTATTGCATGCTGCCATGATCG
* ** * * * * *
1889191 AATTGAGTTGAATGGTGATTTATTGCATGTTGCTATTATTG
1 AATTGAATTGAATTATGAATTATTGCATGCTGCCATGATCG
* * * * * *
1889232 AACTAAATTGAATTGTGAATTAGTGCAAGCTGCCAAGATCG
1 AATTGAATTGAATTATGAATTATTGCATGCTGCCATGATCG
* *
1889273 AACTCAATTGAATT
1 AATTGAATTGAATT
1889287 GAAATATTGA
Statistics
Matches: 146, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
41 145 0.99
42 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (41 bp):
AATTGAATTGAATTATGAATTATTGCATGCTGCCATGATCG
Found at i:1889243 original size:82 final size:82
Alignment explanation
Indices: 1889088--1889285 Score: 234
Period size: 82 Copynumber: 2.4 Consensus size: 82
1889078 GATTATGGAT
* *
1889088 TATTGCATGCTGCCATGATTGAATTGAATTGAATAATGAATTATTGCATGTTGCCATGATCGAAT
1 TATTGCATGCTGCCATGATCGAATTGAATTGAATAATGAATTATTGCATGTTGCCATGATCGAAC
* *
1889153 TGAGTTGAATTGTGAAG
66 TAAATTGAATTGTGAAG
* * ** * * * *
1889170 TATTGCATGCTACCATGATCGAATTGAGTTGAATGGTGATTTATTGCATGTTGCTATTATTGAAC
1 TATTGCATGCTGCCATGATCGAATTGAATTGAATAATGAATTATTGCATGTTGCCATGATCGAAC
*
1889235 TAAATTGAATTGTGAAT
66 TAAATTGAATTGTGAAG
* * * * *
1889252 TAGTGCAAGCTGCCAAGATCGAACTCAATTGAAT
1 TATTGCATGCTGCCATGATCGAATTGAATTGAAT
1889286 TGAAATATTG
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
82 96 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.36
Consensus pattern (82 bp):
TATTGCATGCTGCCATGATCGAATTGAATTGAATAATGAATTATTGCATGTTGCCATGATCGAAC
TAAATTGAATTGTGAAG
Found at i:1892823 original size:23 final size:23
Alignment explanation
Indices: 1892793--1892842 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
1892783 TGTATCGACT
1892793 ATCACTAGCTAAACAAGATTACC
1 ATCACTAGCTAAACAAGATTACC
*
1892816 ATCACTAGCTAAACAAGATTACT
1 ATCACTAGCTAAACAAGATTACC
1892839 ATCA
1 ATCA
1892843 AGAATCGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (23 bp):
ATCACTAGCTAAACAAGATTACC
Found at i:1903318 original size:41 final size:41
Alignment explanation
Indices: 1903273--1903484 Score: 223
Period size: 41 Copynumber: 5.2 Consensus size: 41
1903263 TGCATATGGT
* *
1903273 CATGATCGAATTAAGTTGAATTATGAATTATTGCATGTTGC
1 CATGATCGAATTAAGTCGAATTGTGAATTATTGCATGTTGC
* * *
1903314 CATGATTGAATTGAA-TCGAATTGTGAATTATTACTTGCTT-C
1 CATGATCGAATT-AAGTCGAATTGTGAATTATTGCATG-TTGC
* * *
1903355 CATGATCGAATTAAGTAGAATTGTGAAGTATTGCATGATGC
1 CATGATCGAATTAAGTCGAATTGTGAATTATTGCATGTTGC
* * * *
1903396 CATGATCAAATTGAGTCTAATGGTGAATTATTGCATGTTGC
1 CATGATCGAATTAAGTCGAATTGTGAATTATTGCATGTTGC
* * * * *
1903437 TATGATTGAACTGAA-TCGAATTGTGAATTAGTGCATGCTGC
1 CATGATCGAA-TTAAGTCGAATTGTGAATTATTGCATGTTGC
1903478 CATGATC
1 CATGATC
1903485 AAAATCAATT
Statistics
Matches: 137, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
40 3 0.02
41 128 0.93
42 6 0.04
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (41 bp):
CATGATCGAATTAAGTCGAATTGTGAATTATTGCATGTTGC
Found at i:1903340 original size:123 final size:123
Alignment explanation
Indices: 1903213--1903487 Score: 311
Period size: 123 Copynumber: 2.2 Consensus size: 123
1903203 GAATTTGTTG
* * * * * * * * *
1903213 GTGAATAAATGCATGATTCCATGACCAAATTGATTTGGATTATGGACTATTGCAT-ATGGTCATG
1 GTGAATTAATGCATGCTTCCATGATCAAATTAAGTAGAATTATGAACTATTGCATGAT-GCCATG
* * *
1903277 ATCGAATTAAGT-TGAATTATGAATTATTGCATGTTGCCATGATTGAATTGAATCGAATT
65 ATCAAATTAAGTCT-AATGATGAATTATTGCATGTTGCCATGATTGAACTGAATCGAATT
* * * * * *
1903336 GTGAATTATTACTTGCTTCCATGATCGAATTAAGTAGAATTGTGAAGTATTGCATGATGCCATGA
1 GTGAATTAATGCATGCTTCCATGATCAAATTAAGTAGAATTATGAACTATTGCATGATGCCATGA
* * *
1903401 TCAAATTGAGTCTAATGGTGAATTATTGCATGTTGCTATGATTGAACTGAATCGAATT
66 TCAAATTAAGTCTAATGATGAATTATTGCATGTTGCCATGATTGAACTGAATCGAATT
* *
1903459 GTGAATTAGTGCATGCTGCCATGATCAAA
1 GTGAATTAATGCATGCTTCCATGATCAAA
1903488 ATCAATTGAA
Statistics
Matches: 124, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
123 121 0.98
124 3 0.02
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.36
Consensus pattern (123 bp):
GTGAATTAATGCATGCTTCCATGATCAAATTAAGTAGAATTATGAACTATTGCATGATGCCATGA
TCAAATTAAGTCTAATGATGAATTATTGCATGTTGCCATGATTGAACTGAATCGAATT
Found at i:1905494 original size:33 final size:33
Alignment explanation
Indices: 1905457--1905522 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
1905447 CATCTTAAGA
*
1905457 TCACCCCTTAACACCTCAACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
1905490 TCACCCCTCAACACCTCAACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
1905523 CCATCTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.47, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCTCAACTTCTTTCACCACT
Found at i:1905583 original size:21 final size:21
Alignment explanation
Indices: 1905566--1905620 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
1905556 CTCTCAATTG
1905566 TATCTTCGACTCTATCAAGTT
1 TATCTTCGACTCTATCAAGTT
* * *
1905587 TCTCATCGACTCTCTCAAGTT
1 TATCTTCGACTCTATCAAGTT
1905608 TATCTTCGACTCT
1 TATCTTCGACTCT
1905621 TGATTGTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.29, G:0.09, T:0.42
Consensus pattern (21 bp):
TATCTTCGACTCTATCAAGTT
Found at i:1905723 original size:15 final size:15
Alignment explanation
Indices: 1905703--1905735 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1905693 ACTATGTTTT
*
1905703 CCCTCACCGTCATCC
1 CCCTCACCATCATCC
1905718 CCCTCACCATCATCC
1 CCCTCACCATCATCC
1905733 CCC
1 CCC
1905736 AATACAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.64, G:0.03, T:0.18
Consensus pattern (15 bp):
CCCTCACCATCATCC
Found at i:1909694 original size:38 final size:37
Alignment explanation
Indices: 1909643--1909727 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
1909633 GTCCTATTCT
*
1909643 TAAACCTTTTCTTGATGATGGTAATTGTGTATTAGTGA
1 TAAACCTTTTCTTGAT-ATGGTAATTATGTATTAGTGA
*
1909681 TAAACTTTTTCTTGATATGGTAATTATGTATTAGTGA
1 TAAACCTTTTCTTGATATGGTAATTATGTATTAGTGA
1909718 TAAACCTTTT
1 TAAACCTTTT
1909728 ATTGGTGTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
37 29 0.66
38 15 0.34
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.47
Consensus pattern (37 bp):
TAAACCTTTTCTTGATATGGTAATTATGTATTAGTGA
Found at i:1911475 original size:14 final size:14
Alignment explanation
Indices: 1911456--1911498 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
1911446 GGAAAAGTCA
1911456 ACGGGTTGACTCGG
1 ACGGGTTGACTCGG
*
1911470 ACGGGTTGACTCAG
1 ACGGGTTGACTCGG
*
1911484 ACCGAGTTGACTCGG
1 A-CGGGTTGACTCGG
1911499 TAATTGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.19, C:0.23, G:0.37, T:0.21
Consensus pattern (14 bp):
ACGGGTTGACTCGG
Found at i:1913300 original size:62 final size:62
Alignment explanation
Indices: 1913155--1913291 Score: 265
Period size: 62 Copynumber: 2.2 Consensus size: 62
1913145 AAATGTGTCT
*
1913155 AGTATCAATATTGTTACCCTGATTATCGATATTGTAGGGGAAGTATCAGTACTCTCCCCAAC
1 AGTATCAATACTGTTACCCTGATTATCGATATTGTAGGGGAAGTATCAGTACTCTCCCCAAC
1913217 AGTATCAATACTGTTACCCTGATTATCGATATTGTAGGGGAAGTATCAGTACTCTCCCCAAC
1 AGTATCAATACTGTTACCCTGATTATCGATATTGTAGGGGAAGTATCAGTACTCTCCCCAAC
1913279 AGTATCAATACTG
1 AGTATCAATACTG
1913292 CCTACCTGAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 74 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (62 bp):
AGTATCAATACTGTTACCCTGATTATCGATATTGTAGGGGAAGTATCAGTACTCTCCCCAAC
Found at i:1913716 original size:20 final size:21
Alignment explanation
Indices: 1913691--1913730 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1913681 CTCTGTATAG
*
1913691 TAGTATTGATACCAT-AGGCA
1 TAGTATCGATACCATCAGGCA
1913711 TAGTATCGATACCATCAGGC
1 TAGTATCGATACCATCAGGC
1913731 CCCAACGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (21 bp):
TAGTATCGATACCATCAGGCA
Found at i:1915444 original size:20 final size:20
Alignment explanation
Indices: 1915419--1915469 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
1915409 AAAAGGAATT
*
1915419 TTTAAAAATTTAATAATTAA
1 TTTAAAAATTTAATAATAAA
1915439 TTT-AAAATTT-ATAATAAA
1 TTTAAAAATTTAATAATAAA
*
1915457 TTAATAAAATTTA
1 TTTA-AAAATTTA
1915470 GAACTCATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 9 0.35
19 7 0.27
20 10 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAAAAATTTAATAATAAA
Found at i:1915452 original size:18 final size:19
Alignment explanation
Indices: 1915423--1915469 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 19
1915413 GGAATTTTTA
*
1915423 AAAATTTAATAATTAATT-T
1 AAAATTT-ATAATAAATTAT
1915442 AAAATTTATAATAAATTAAT
1 AAAATTTATAATAAATT-AT
1915462 AAAATTTA
1 AAAATTTA
1915470 GAACTCATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 9 0.36
19 7 0.28
20 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTTATAATAAATTAT
Found at i:1927420 original size:3 final size:3
Alignment explanation
Indices: 1927412--1927474 Score: 83
Period size: 3 Copynumber: 21.0 Consensus size: 3
1927402 TGTTACGATA
* *
1927412 ATC ATC ATC ATC ATC ATT ATC ACC ATC ATC ATC ATC ATC A-C TATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC -ATC
*
1927457 ACC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC
1927475 TTACGCATGT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 1 0.02
3 50 0.96
4 1 0.02
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:1927444 original size:24 final size:24
Alignment explanation
Indices: 1927412--1927474 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
1927402 TGTTACGATA
*
1927412 ATCATCATCATCATCATTATCACC
1 ATCATCATCATCATCACTATCACC
1927436 ATCATCATCATCATCACTATCACC
1 ATCATCATCATCATCACTATCACC
1927460 ATCATCATCATCATC
1 ATCATCATCATCATC
1927475 TTACGCATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.32
Consensus pattern (24 bp):
ATCATCATCATCATCACTATCACC
Found at i:1940137 original size:214 final size:210
Alignment explanation
Indices: 1939767--1940203 Score: 734
Period size: 214 Copynumber: 2.1 Consensus size: 210
1939757 GCTAAAGTAG
*
1939767 AAAATTAGGAAATAATGAGGGACCTAATTGGTAATTTTCTCAAAAAGAATTTTTATTCCATAAAT
1 AAAATTAGGAAATAATGAGGGACCTAATAGGTAATTTTCTCAAAAAGAATTTTTATTCCATAAAT
*
1939832 GGAAAGTTTTATATTGAGAGTGGGGTTTTATTGAAATTTGATTCTTGATCTGGAAATTGTGTTAA
66 GGAAAGTTTTATATTGAGAGTGGGGTTTTATTGAAATTAGATTCTTGATCTGGAAATTGTGTTAA
*
1939897 AACTATGAAGTGTTAATTTCTGGTAAAAATTAGGTAAATCGGATCGAATCAAAATTTGGAAAAAA
131 AACTATGAAGTGTTAATTTCTGGTAAAAATTAGGT-AA----ATCGAATCAAAATTTAGAAAAAA
1939962 AAATTGAAGGACGATAAATT
191 AAATTGAAGGACGATAAATT
** *
1939982 AAAATTAGGAAATGTTGAGGGACCTAATAGGTAATTTTC-CCAAAAGAATTTTTATTCCATAAAT
1 AAAATTAGGAAATAATGAGGGACCTAATAGGTAATTTTCTCAAAAAGAATTTTTATTCCATAAAT
*
1940046 GGAAAGTTTTATATTGAGAGTGGGGTTTTATTGAAATTAGATTCTTTATCTGGAAATTGTGTTAA
66 GGAAAGTTTTATATTGAGAGTGGGGTTTTATTGAAATTAGATTCTTGATCTGGAAATTGTGTTAA
*
1940111 AACTATGAAGTGTTAATTTCTGGTAAAAATTTGGTAAATCGAATCAAAATTTAGAAAAAAAAATT
131 AACTATGAAGTGTTAATTTCTGGTAAAAATTAGGTAAATCGAATCAAAATTTAGAAAAAAAAATT
*
1940176 GAAGGATGATAAATT
196 GAAGGACGATAAATT
1940191 AAAATTA-GAAATA
1 AAAATTAGGAAATA
1940204 TTATTTCCAT
Statistics
Matches: 212, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
208 5 0.02
209 48 0.23
213 2 0.01
214 121 0.57
215 36 0.17
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (210 bp):
AAAATTAGGAAATAATGAGGGACCTAATAGGTAATTTTCTCAAAAAGAATTTTTATTCCATAAAT
GGAAAGTTTTATATTGAGAGTGGGGTTTTATTGAAATTAGATTCTTGATCTGGAAATTGTGTTAA
AACTATGAAGTGTTAATTTCTGGTAAAAATTAGGTAAATCGAATCAAAATTTAGAAAAAAAAATT
GAAGGACGATAAATT
Found at i:1942940 original size:4 final size:4
Alignment explanation
Indices: 1942917--1942950 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
1942907 AAAATGAGAG
1942917 AAAT AAA- AAAT AATAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AA
1942951 CAAATGTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:1944146 original size:7 final size:7
Alignment explanation
Indices: 1944136--1944200 Score: 96
Period size: 7 Copynumber: 9.3 Consensus size: 7
1944126 ACGAAAATGA
1944136 ATAATAT
1 ATAATAT
1944143 ATAATAT
1 ATAATAT
1944150 ATAATAT
1 ATAATAT
*
1944157 ATAATAA
1 ATAATAT
1944164 ATAATAT
1 ATAATAT
1944171 ATAATACT
1 ATAATA-T
*
1944179 ATATTAT
1 ATAATAT
1944186 ATAATAT
1 ATAATAT
1944193 ATAA-AT
1 ATAATAT
1944199 AT
1 AT
1944201 TTTTTTTAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
6 4 0.08
7 43 0.81
8 6 0.11
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (7 bp):
ATAATAT
Found at i:1944237 original size:11 final size:11
Alignment explanation
Indices: 1944223--1944281 Score: 50
Period size: 11 Copynumber: 5.1 Consensus size: 11
1944213 TATAATATAC
1944223 ATATTTTCAAA
1 ATATTTTCAAA
1944234 ATATTTTCAAAA
1 ATATTTTC-AAA
*
1944246 ACTATATATT--AT
1 A-TAT-T-TTCAAA
1944258 ATATATTTCAAA
1 ATAT-TTTCAAA
1944270 ATATTTTCAAA
1 ATATTTTCAAA
1944281 A
1 A
1944282 ACTATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
10 2 0.05
11 21 0.52
12 11 0.28
13 3 0.08
14 1 0.03
15 2 0.05
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATTTTCAAA
Found at i:1944338 original size:77 final size:75
Alignment explanation
Indices: 1944208--1944458 Score: 280
Period size: 75 Copynumber: 3.3 Consensus size: 75
1944198 TATTTTTTTT
* *
1944208 AACTATATA-ATATACATATTTTCAAAATATTTTCAAAAACTATATATTATATATA-TTTCAAAA
1 AACTATATATATATATATATATTCAAAATATTTTCAAAAACTATATATTATATATATTTTCAAAA
1944271 TATTTTCA-AA
66 TATTTT-ATAA
* *
1944281 AACTATATATATTATATATATATTCAAAATGTTTTCAAAAACTATATATTATATATATTTGCAAA
1 AACTATATATA-TATATATATATTCAAAATATTTTCAAAAACTATATATTATATATATTTTCAAA
1944346 ATATTTTTATAA
65 ATA-TTTTATAA
* * * *
1944358 AATCTAT-TATATATATATGT-TTCAAAACGTCTTTTTAAAAACTATATATTATATATATGTTTT
1 AA-CTATATATATATATATATATTCAAAA--TATTTTCAAAAACTATATATTATATATAT-TTTC
1944421 AAAA-ATTTTATAAA
62 AAAATATTTTAT-AA
**
1944435 AAAAATATATTATATACTATATAT
1 AACTATATA-TATATA-TATATAT
1944459 ATATACACAC
Statistics
Matches: 152, Mismatches: 12, Indels: 21
0.82 0.06 0.11
Matches are distributed among these distances:
73 9 0.06
74 1 0.01
75 49 0.32
76 26 0.17
77 46 0.30
78 16 0.11
79 4 0.03
80 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (75 bp):
AACTATATATATATATATATATTCAAAATATTTTCAAAAACTATATATTATATATATTTTCAAAA
TATTTTATAA
Found at i:1948293 original size:17 final size:17
Alignment explanation
Indices: 1948235--1948294 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
1948225 GTACTAAATG
1948235 AAAGAAAATTGAGTTCA
1 AAAGAAAATTGAGTTCA
* *
1948252 AAATAAAATATTTGA-TAT-G
1 AAA-GAAA-A-TTGAGT-TCA
1948271 AAAGAAAATTGAGTTCA
1 AAAGAAAATTGAGTTCA
1948288 AAAGAAA
1 AAAGAAA
1948295 TGAAAAATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 5 0.15
17 12 0.36
18 6 0.18
19 5 0.15
20 5 0.15
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (17 bp):
AAAGAAAATTGAGTTCA
Found at i:1961779 original size:14 final size:14
Alignment explanation
Indices: 1961757--1961790 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
1961747 AACATGAACA
*
1961757 AAGAGGAAATGAAG
1 AAGAAGAAATGAAG
1961771 AAGAAGAAATGAAG
1 AAGAAGAAATGAAG
1961785 -AGAAGA
1 AAGAAGA
1961791 GAAATATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.06
Consensus pattern (14 bp):
AAGAAGAAATGAAG
Found at i:1962995 original size:26 final size:26
Alignment explanation
Indices: 1962966--1963019 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
1962956 ATGAAAGTGC
*
1962966 TAATACACATAAGGTTGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
*
1962992 TAATATACATAAGGTCGTGCCCACCA
1 TAATACACATAAGGTCGTGCCCACCA
1963018 TA
1 TA
1963020 TGCACTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (26 bp):
TAATACACATAAGGTCGTGCCCACCA
Found at i:1963759 original size:20 final size:20
Alignment explanation
Indices: 1963734--1963774 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1963724 TTTATCCAAA
1963734 TCAACAATCCAATATTAAAT
1 TCAACAATCCAATATTAAAT
* * *
1963754 TCAACATTCTAATATTTAAT
1 TCAACAATCCAATATTAAAT
1963774 T
1 T
1963775 TTTAGCTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (20 bp):
TCAACAATCCAATATTAAAT
Found at i:1964055 original size:31 final size:29
Alignment explanation
Indices: 1963998--1964057 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
1963988 TTACCAAAAC
* * *
1963998 ATAAATTTTGAAAGTTTATTAGCCAAAGT
1 ATAAATTTGGAAAGTTTAGTAACCAAAGT
1964027 ATAAAGTTTGGAAACGTTTAGTAACCAAAGT
1 ATAAA-TTTGGAAA-GTTTAGTAACCAAAGT
1964058 GTAATTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 7 0.27
31 14 0.54
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (29 bp):
ATAAATTTGGAAAGTTTAGTAACCAAAGT
Found at i:1965277 original size:20 final size:20
Alignment explanation
Indices: 1965233--1965271 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1965223 TACTCTGCTG
*
1965233 GAATTTAATGTTTGAATGTT
1 GAATTTAATGTTAGAATGTT
*
1965253 GAATTTGATGTTAGAATGT
1 GAATTTAATGTTAGAATGT
1965272 GAAATTGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
GAATTTAATGTTAGAATGTT
Found at i:1966938 original size:26 final size:26
Alignment explanation
Indices: 1966909--1966984 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
1966899 TTGTATATAT
*
1966909 ATATGTGGCACTTTCGAGTGTAATTG
1 ATATATGGCACTTTCGAGTGTAATTG
*
1966935 ATATATGGCACTTTCGAGTGTAAGTG
1 ATATATGGCACTTTCGAGTGTAATTG
1966961 ATATATGGCACTTTCGAGTGTAAT
1 ATATATGGCACTTTCGAGTGTAAT
1966985 ATTTGGATAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (26 bp):
ATATATGGCACTTTCGAGTGTAATTG
Found at i:1968686 original size:16 final size:15
Alignment explanation
Indices: 1968667--1968701 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
1968657 TTATTCATAC
*
1968667 TATTAATTATATTTAA
1 TATTAAATATA-TTAA
1968683 TATTAAATATATTAA
1 TATTAAATATATTAA
1968698 TATT
1 TATT
1968702 TTGCAGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATTAAATATATTAA
Found at i:1968946 original size:18 final size:18
Alignment explanation
Indices: 1968923--1968960 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
1968913 TAAATGTAAA
1968923 CAATAATAATATTCAATG
1 CAATAATAATATTCAATG
1968941 CAATAATAATATTCAATG
1 CAATAATAATATTCAATG
1968959 CA
1 CA
1968961 TTATGATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (18 bp):
CAATAATAATATTCAATG
Found at i:1969412 original size:22 final size:23
Alignment explanation
Indices: 1969369--1969412 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
1969359 AATGAAATTT
**
1969369 TATTTCTTTAGAATTTCCATATCA
1 TATTTCTTTA-AATTTAAATATCA
1969393 TATTTCTTT-AATTTAAATAT
1 TATTTCTTTAAATTTAAATAT
1969413 AATAAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
24 9 0.50
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTTCTTTAAATTTAAATATCA
Found at i:1970148 original size:25 final size:25
Alignment explanation
Indices: 1970127--1970184 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
1970117 ATATGCACTT
*
1970127 AAAAGTGCCTCGTAGAATTGCACCC
1 AAAAGTGCCTCATAGAATTGCACCC
**
1970152 AAAAGTTTCTCATAGAATTGCA-CC
1 AAAAGTGCCTCATAGAATTGCACCC
*
1970176 ATAAGTGCC
1 AAAAGTGCC
1970185 ACAAAAACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (25 bp):
AAAAGTGCCTCATAGAATTGCACCC
Found at i:1970891 original size:25 final size:25
Alignment explanation
Indices: 1970870--1970927 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
1970860 ATATGCACTT
*
1970870 AAAAGTGCCTCGTAGAATTGCACCC
1 AAAAGTGCCTCATAGAATTGCACCC
**
1970895 AAAAGTTTCTCATAGAATTGCA-CC
1 AAAAGTGCCTCATAGAATTGCACCC
*
1970919 ATAAGTGCC
1 AAAAGTGCC
1970928 ACAAAAACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (25 bp):
AAAAGTGCCTCATAGAATTGCACCC
Found at i:1971354 original size:743 final size:743
Alignment explanation
Indices: 1969929--1971420 Score: 2984
Period size: 743 Copynumber: 2.0 Consensus size: 743
1969919 TTTCAAAGTT
1969929 ATTTCACATATAAAACATATCGAGTCAATTAAAATATTCAGTAAATCACTAGTTAATTTTTTATA
1 ATTTCACATATAAAACATATCGAGTCAATTAAAATATTCAGTAAATCACTAGTTAATTTTTTATA
1969994 CATATAACTTGTGGTTTCCATATTCAAACCATATAAGCTTGTACTTTTCAAGTATTTAAATCATA
66 CATATAACTTGTGGTTTCCATATTCAAACCATATAAGCTTGTACTTTTCAAGTATTTAAATCATA
1970059 GCCCAATGTATTTTAACCGATAATATCATATACTTGAGTCTCATCGAGTGTGCACGCTATATGCA
131 GCCCAATGTATTTTAACCGATAATATCATATACTTGAGTCTCATCGAGTGTGCACGCTATATGCA
1970124 CTTAAAAGTGCCTCGTAGAATTGCACCCAAAAGTTTCTCATAGAATTGCACCATAAGTGCCACAA
196 CTTAAAAGTGCCTCGTAGAATTGCACCCAAAAGTTTCTCATAGAATTGCACCATAAGTGCCACAA
1970189 AAACATATATCAGATAATCACTCCATCTCATGGCATGCCATTAATACCTAAAACTCTCAATACAC
261 AAACATATATCAGATAATCACTCCATCTCATGGCATGCCATTAATACCTAAAACTCTCAATACAC
1970254 ATACATTAGACTTTATTTTGGAAATATCTGCTCATAAAAGCATTCTTTTAACTTAATATGAAATA
326 ATACATTAGACTTTATTTTGGAAATATCTGCTCATAAAAGCATTCTTTTAACTTAATATGAAATA
1970319 ATTCTTATCAAATCAGATTTGGGAAATTCTTACCCAAACACGTTCTCATGCTATAAATTAAAATA
391 ATTCTTATCAAATCAGATTTGGGAAATTCTTACCCAAACACGTTCTCATGCTATAAATTAAAATA
1970384 CCATATAATCGAATATAACAAAAATATCACAAATACTATATTGGGTAATTCATACCCAGAAACAT
456 CCATATAATCGAATATAACAAAAATATCACAAATACTATATTGGGTAATTCATACCCAGAAACAT
1970449 GTAAAACCATTTAATAAATCTGTATAAAAATATTTCATAAAATCATTCAAATTATTTTCATTCAA
521 GTAAAACCATTTAATAAATCTGTATAAAAATATTTCATAAAATCATTCAAATTATTTTCATTCAA
1970514 AAATATTTGAGGTTCACTCATCGCAAGGCGTCCTCATGTTGTTTATAAAATATATAAGTTGCACT
586 AAATATTTGAGGTTCACTCATCGCAAGGCGTCCTCATGTTGTTTATAAAATATATAAGTTGCACT
1970579 CACTTGGTGCCTCACAAACGCTTATTGCTACCTTTCTCTTTTTTGTTCTCGGTTACGATCACGAT
651 CACTTGGTGCCTCACAAACGCTTATTGCTACCTTTCTCTTTTTTGTTCTCGGTTACGATCACGAT
1970644 CTTCACGAGGCTTTTTCCAACATATAAA
716 CTTCACGAGGCTTTTTCCAACATATAAA
1970672 ATTTCACATATAAAACATATCGAGTCAATTAAAATATTCAGTAAATCACTAGTTAATTTTTTATA
1 ATTTCACATATAAAACATATCGAGTCAATTAAAATATTCAGTAAATCACTAGTTAATTTTTTATA
1970737 CATATAACTTGTGGTTTCCATATTCAAACCATATAAGCTTGTACTTTTCAAGTATTTAAATCATA
66 CATATAACTTGTGGTTTCCATATTCAAACCATATAAGCTTGTACTTTTCAAGTATTTAAATCATA
1970802 GCCCAATGTATTTTAACCGATAATATCATATACTTGAGTCTCATCGAGTGTGCACGCTATATGCA
131 GCCCAATGTATTTTAACCGATAATATCATATACTTGAGTCTCATCGAGTGTGCACGCTATATGCA
1970867 CTTAAAAGTGCCTCGTAGAATTGCACCCAAAAGTTTCTCATAGAATTGCACCATAAGTGCCACAA
196 CTTAAAAGTGCCTCGTAGAATTGCACCCAAAAGTTTCTCATAGAATTGCACCATAAGTGCCACAA
1970932 AAACATATATCAGATAATCACTCCATCTCATGGCATGCCATTAATACCTAAAACTCTCAATACAC
261 AAACATATATCAGATAATCACTCCATCTCATGGCATGCCATTAATACCTAAAACTCTCAATACAC
1970997 ATACATTAGACTTTATTTTGGAAATATCTGCTCATAAAAGCATTCTTTTAACTTAATATGAAATA
326 ATACATTAGACTTTATTTTGGAAATATCTGCTCATAAAAGCATTCTTTTAACTTAATATGAAATA
1971062 ATTCTTATCAAATCAGATTTGGGAAATTCTTACCCAAACACGTTCTCATGCTATAAATTAAAATA
391 ATTCTTATCAAATCAGATTTGGGAAATTCTTACCCAAACACGTTCTCATGCTATAAATTAAAATA
1971127 CCATATAATCGAATATAACAAAAATATCACAAATACTATATTGGGTAATTCATACCCAGAAACAT
456 CCATATAATCGAATATAACAAAAATATCACAAATACTATATTGGGTAATTCATACCCAGAAACAT
1971192 GTAAAACCATTTAATAAATCTGTATAAAAATATTTCATAAAATCATTCAAATTATTTTCATTCAA
521 GTAAAACCATTTAATAAATCTGTATAAAAATATTTCATAAAATCATTCAAATTATTTTCATTCAA
1971257 AAATATTTGAGGTTCACTCATCGCAAGGCGTCCTCATGTTGTTTATAAAATATATAAGTTGCACT
586 AAATATTTGAGGTTCACTCATCGCAAGGCGTCCTCATGTTGTTTATAAAATATATAAGTTGCACT
1971322 CACTTGGTGCCTCACAAACGCTTATTGCTACCTTTCTCTTTTTTGTTCTCGGTTACGATCACGAT
651 CACTTGGTGCCTCACAAACGCTTATTGCTACCTTTCTCTTTTTTGTTCTCGGTTACGATCACGAT
1971387 CTTCACGAGGCTTTTTCCAACATATAAA
716 CTTCACGAGGCTTTTTCCAACATATAAA
1971415 ATTTCA
1 ATTTCA
1971421 AACAATGTAT
Statistics
Matches: 749, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
743 749 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (743 bp):
ATTTCACATATAAAACATATCGAGTCAATTAAAATATTCAGTAAATCACTAGTTAATTTTTTATA
CATATAACTTGTGGTTTCCATATTCAAACCATATAAGCTTGTACTTTTCAAGTATTTAAATCATA
GCCCAATGTATTTTAACCGATAATATCATATACTTGAGTCTCATCGAGTGTGCACGCTATATGCA
CTTAAAAGTGCCTCGTAGAATTGCACCCAAAAGTTTCTCATAGAATTGCACCATAAGTGCCACAA
AAACATATATCAGATAATCACTCCATCTCATGGCATGCCATTAATACCTAAAACTCTCAATACAC
ATACATTAGACTTTATTTTGGAAATATCTGCTCATAAAAGCATTCTTTTAACTTAATATGAAATA
ATTCTTATCAAATCAGATTTGGGAAATTCTTACCCAAACACGTTCTCATGCTATAAATTAAAATA
CCATATAATCGAATATAACAAAAATATCACAAATACTATATTGGGTAATTCATACCCAGAAACAT
GTAAAACCATTTAATAAATCTGTATAAAAATATTTCATAAAATCATTCAAATTATTTTCATTCAA
AAATATTTGAGGTTCACTCATCGCAAGGCGTCCTCATGTTGTTTATAAAATATATAAGTTGCACT
CACTTGGTGCCTCACAAACGCTTATTGCTACCTTTCTCTTTTTTGTTCTCGGTTACGATCACGAT
CTTCACGAGGCTTTTTCCAACATATAAA
Found at i:1972737 original size:28 final size:28
Alignment explanation
Indices: 1972695--1972776 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
1972685 ATCTAATTTA
*
1972695 AAATTCATCGCTTAATAGCTCTTTACCG
1 AAATTTATCGCTTAATAGCTCTTTACCG
* * * *
1972723 AACTTTATCGTTTAAAAGCTCTTTATCG
1 AAATTTATCGCTTAATAGCTCTTTACCG
1972751 AAATTTATCGCTTAATAGCTCTTTAC
1 AAATTTATCGCTTAATAGCTCTTTAC
1972777 AATTTTCCCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (28 bp):
AAATTTATCGCTTAATAGCTCTTTACCG
Found at i:1973320 original size:28 final size:28
Alignment explanation
Indices: 1973278--1973359 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
1973268 ATCTAATTTA
*
1973278 AAATTCATCGCTTAATAGCTCTTTACCG
1 AAATTTATCGCTTAATAGCTCTTTACCG
* * * *
1973306 AACTTTATCGTTTAAAAGCTCTTTATCG
1 AAATTTATCGCTTAATAGCTCTTTACCG
1973334 AAATTTATCGCTTAATAGCTCTTTAC
1 AAATTTATCGCTTAATAGCTCTTTAC
1973360 AATTTTCCCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (28 bp):
AAATTTATCGCTTAATAGCTCTTTACCG
Found at i:1973455 original size:583 final size:582
Alignment explanation
Indices: 1972348--1973596 Score: 2419
Period size: 583 Copynumber: 2.1 Consensus size: 582
1972338 CCCCTAATTC
* * * * *
1972348 TTTTTAATCAACTTTCGTGCTTGACTATAACTCTACAACTCTTCTAACATCATAAACCAACTTTA
1 TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
*
1972413 TTTCATCCAATTTAAACTTCCCCTTCAACCACCATTTTCATGAAATTATCACACCAAGCATGAAA
66 TTTCATCCAATTTCAACTTCCCCTTCAACCACCATTTTCATGAAATTATCACACCAAGCATGAAA
1972478 ACATGAAATATTTATACCAACTTGTAGAGAATTTGATGTAGGTAAATTTTCTATTTCACACTTTA
131 ACATGAAATATTTATACCAACTTGTAGAGAATTTGATGTAGGTAAATTTTCTATTTCACACTTTA
1972543 GTCCAAAAACCTAATAAAATGGCTTAAAAATGAAAAATAATGCTTGCTCACCTTGGCCATGGAGA
196 GTCCAAAAACCTAATAAAATGGCTTAAAAATGAAAAATAATGCTTGCTCACCTTGGCCATGGAGA
1972608 CCCACAATTGGAGAAGAAGATGAAGAAAATTCTTGACTTTTCTATAAAAAAACAATATATACTAC
261 CCCACAATTGGAGAAGAAGATGAAGAAAATTCTTGACTTTTCTATAAAAAAACAATATATACTAC
1972673 ACAAGGATTTAAATCTAATTTAAAATTCATCGCTTAATAGCTCTTTACCGAACTTTATCGTTTAA
326 ACAAGGATTTAAATCTAATTTAAAATTCATCGCTTAATAGCTCTTTACCGAACTTTATCGTTTAA
1972738 AAGCTCTTTATCGAAATTTATCGCTTAATAGCTCTTTACAATTTTCCCAATATTTTTCTTCATGG
391 AAGCTCTTTATCGAAATTTATCGCTTAATAGCTCTTTACAATTTTCCCAATATTTTTCTTCATGG
1972803 CCGAATCTTAGGGGATTAATTTCCCATGATCTCTACTTTGATTCAAGCTTGAAATCATCACCCAA
456 CCGAATCTTAGGGGATTAATTTCCCATGATCTCTACTTTGATTCAAGCTTGAAATCATCACCCAA
1972868 AATTCATTTCCATTCAATTCCATATCAAAAAACCAAAATCAACATTTCTCCATAAACCCTATGT
521 AATTCATTTCCATTCAATTCCATATCAAAAAA--AAAATCAACATTTCTCCATAAACCCTATGT
1972932 TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
1 TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
1972997 TTTCATCCAATTTCAACTTCCCCTTCAACCACCATTTTCATGAAATTATCACACCAAGCATGAAA
66 TTTCATCCAATTTCAACTTCCCCTTCAACCACCATTTTCATGAAATTATCACACCAAGCATGAAA
1973062 ACATGAAATATTTATACCAACTTGTAGAGAATTTGATGTAGGTAAATTTTCTATTTCACACTTTA
131 ACATGAAATATTTATACCAACTTGTAGAGAATTTGATGTAGGTAAATTTTCTATTTCACACTTTA
1973127 GTCC-AAAACCTAATAAAATGGCTTAAAAATGAAAAATAATGCTTGCTCACCTTGGCCATGGAGA
196 GTCCAAAAACCTAATAAAATGGCTTAAAAATGAAAAATAATGCTTGCTCACCTTGGCCATGGAGA
1973191 CCCACAATTGGAGAAGAAGATGAAGAAAATTCTTGACTTTTCTATAAAAAAACAATATATACTAC
261 CCCACAATTGGAGAAGAAGATGAAGAAAATTCTTGACTTTTCTATAAAAAAACAATATATACTAC
1973256 ACAAGGATTTAAATCTAATTTAAAATTCATCGCTTAATAGCTCTTTACCGAACTTTATCGTTTAA
326 ACAAGGATTTAAATCTAATTTAAAATTCATCGCTTAATAGCTCTTTACCGAACTTTATCGTTTAA
1973321 AAGCTCTTTATCGAAATTTATCGCTTAATAGCTCTTTACAATTTTCCCAATATTTTTCTTCATGG
391 AAGCTCTTTATCGAAATTTATCGCTTAATAGCTCTTTACAATTTTCCCAATATTTTTCTTCATGG
1973386 CCGAATCTTAGGGGATTAATTTCCCATGATCTCTACTTTGATTCAAGCTTGAAATCATCACCCAA
456 CCGAATCTTAGGGGATTAATTTCCCATGATCTCTACTTTGATTCAAGCTTGAAATCATCACCCAA
1973451 AATTCATTTCCATTCAATTCCATATCAAAAAAAAAATCAACATTTCTCCATAAACCCTATGT
521 AATTCATTTCCATTCAATTCCATATCAAAAAAAAAATCAACATTTCTCCATAAACCCTATGT
1973513 TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
1 TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
1973578 TTTCATCCAATTTCAACTT
66 TTTCATCCAATTTCAACTT
1973597 TATGTAGTTA
Statistics
Matches: 659, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
581 114 0.17
583 352 0.53
584 193 0.29
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (582 bp):
TTTTTAATCAACTTTCATGCCTGATTATAACTCTACAACACTTCTAACATCACAAACCAACTTTA
TTTCATCCAATTTCAACTTCCCCTTCAACCACCATTTTCATGAAATTATCACACCAAGCATGAAA
ACATGAAATATTTATACCAACTTGTAGAGAATTTGATGTAGGTAAATTTTCTATTTCACACTTTA
GTCCAAAAACCTAATAAAATGGCTTAAAAATGAAAAATAATGCTTGCTCACCTTGGCCATGGAGA
CCCACAATTGGAGAAGAAGATGAAGAAAATTCTTGACTTTTCTATAAAAAAACAATATATACTAC
ACAAGGATTTAAATCTAATTTAAAATTCATCGCTTAATAGCTCTTTACCGAACTTTATCGTTTAA
AAGCTCTTTATCGAAATTTATCGCTTAATAGCTCTTTACAATTTTCCCAATATTTTTCTTCATGG
CCGAATCTTAGGGGATTAATTTCCCATGATCTCTACTTTGATTCAAGCTTGAAATCATCACCCAA
AATTCATTTCCATTCAATTCCATATCAAAAAAAAAATCAACATTTCTCCATAAACCCTATGT
Found at i:1975432 original size:24 final size:24
Alignment explanation
Indices: 1975405--1975478 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
1975395 CAGCTCATAT
1975405 AATTTG-CACCGAAGTACCACGTAG
1 AATTTGTC-CCGAAGTACCACGTAG
* * *
1975429 AATTTGTCCCAAAGAACCGCGTAG
1 AATTTGTCCCGAAGTACCACGTAG
1975453 AATTTGTCCCGAA-TGACCACGTAG
1 AATTTGTCCCGAAGT-ACCACGTAG
1975477 AA
1 AA
1975479 ATATCCAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
24 41 0.98
25 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (24 bp):
AATTTGTCCCGAAGTACCACGTAG
Found at i:1978471 original size:11 final size:11
Alignment explanation
Indices: 1978455--1978485 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
1978445 GGGTTCTATT
1978455 TAATATATATA
1 TAATATATATA
1978466 TAATATATATA
1 TAATATATATA
1978477 TAATATATA
1 TAATATATA
1978486 GTTTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATATATATA
Found at i:1978524 original size:39 final size:37
Alignment explanation
Indices: 1978470--1978774 Score: 328
Period size: 37 Copynumber: 8.4 Consensus size: 37
1978460 TATATATAAT
**
1978470 ATATATATAATATATAGTTTTTGAAAACATTTTTAAAA
1 ATATATATAATATATAGTTTTTGAAAACA-TTTCGAAA
* *
1978508 CATATATATAATATATA-CTTTTGAAAACATTTTGAAGAA
1 -ATATATATAATATATAGTTTTTGAAAACATTTCG-A-AA
*
1978547 ATATATATAATATATAGTTTTTGAAAACATTTTGAAA
1 ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
1978584 ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
1 ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
*
1978621 ATATATATAATTTATAGTTTTTGAAAACATTTCGAAA
1 ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
*
1978658 ATATATATAGTATATAGTTTTTG---A-A-----AAA
1 ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
* * * *
1978686 ATATATATAATATATAGTTTTTAAAAAAAAAATT-GAAT
1 ATATATATAATATATAGTTTTT--GAAAACATTTCGAAA
* * *
1978724 ATATATATAATAAATAG-TTTTCAAAACATTTTTTGAAA
1 ATATATATAATATATAGTTTTTGAAAACA--TTTCGAAA
1978762 ATATATATAATAT
1 ATATATATAATAT
1978775 TTTGTTAAAA
Statistics
Matches: 234, Mismatches: 16, Indels: 33
0.83 0.06 0.12
Matches are distributed among these distances:
28 24 0.10
33 2 0.01
34 2 0.01
35 5 0.02
37 105 0.45
38 62 0.26
39 34 0.15
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.42
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTTGAAAACATTTCGAAA
Found at i:1978687 original size:28 final size:28
Alignment explanation
Indices: 1978655--1978714 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
1978645 AAACATTTCG
* *
1978655 AAAATATATATAGTATATAGTTTTTGAA
1 AAAATATATATAATATATAGTTTTTAAA
1978683 AAAATATATATAATATATAGTTTTTAAA
1 AAAATATATATAATATATAGTTTTTAAA
1978711 AAAA
1 AAAA
1978715 AAATTGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (28 bp):
AAAATATATATAATATATAGTTTTTAAA
Found at i:1978687 original size:102 final size:102
Alignment explanation
Indices: 1978581--1978770 Score: 258
Period size: 102 Copynumber: 1.8 Consensus size: 102
1978571 AAACATTTTG
* * * ** *
1978581 AAAATATATATAATATATAGTTTTT-GAAAACATTTCGAAAATATATATAATTTATAGTTTTTGA
1 AAAATATATATAATATATAGTTTTTAAAAAAAAATT-GAAAATATATATAATAAATAG-TTTTCA
1978645 AAACA-TTTCGAAAATATATATAGTATATAGTTTTTGAA
64 AAACATTTTCGAAAATATATATAGTATATAGTTTTTGAA
*
1978683 AAAATATATATAATATATAGTTTTTAAAAAAAAAATTGAATATATATATAATAAATAGTTTTCAA
1 AAAATATATATAATATATAGTTTTT-AAAAAAAAATTGAAAATATATATAATAAATAGTTTTCAA
*
1978748 AACATTTTTTGAAAATATATATA
65 AACA-TTTTCGAAAATATATATA
1978771 ATATTTTGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
102 35 0.46
103 18 0.24
104 23 0.30
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (102 bp):
AAAATATATATAATATATAGTTTTTAAAAAAAAATTGAAAATATATATAATAAATAGTTTTCAAA
ACATTTTCGAAAATATATATAGTATATAGTTTTTGAA
Found at i:1978724 original size:27 final size:28
Alignment explanation
Indices: 1978662--1978728 Score: 84
Period size: 27 Copynumber: 2.4 Consensus size: 28
1978652 TCGAAAATAT
* * *
1978662 ATATAGTATATAGTTTTTGAAAAAATAT
1 ATATAATATATAGTTTTTGAAAAAAAAA
1978690 ATATAATATATAGTTTTT-AAAAAAAAA
1 ATATAATATATAGTTTTTGAAAAAAAAA
1978717 AT-TGAATATATA
1 ATAT-AATATATA
1978729 TATAATAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 17 0.49
28 17 0.49
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (28 bp):
ATATAATATATAGTTTTTGAAAAAAAAA
Found at i:1978760 original size:38 final size:38
Alignment explanation
Indices: 1978683--1978773 Score: 110
Period size: 38 Copynumber: 2.4 Consensus size: 38
1978673 AGTTTTTGAA
* *
1978683 AAAATATATATAATATATAGTTTTTAAAAAAAAAATTG
1 AAAATATATATAATAAATAGTTTTCAAAAAAAAAATTG
* * ****
1978721 AATATATATATAATAAATAGTTTTCAAAACATTTTTTG
1 AAAATATATATAATAAATAGTTTTCAAAAAAAAAATTG
1978759 AAAATATATATAATA
1 AAAATATATATAATA
1978774 TTTTGTTAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (38 bp):
AAAATATATATAATAAATAGTTTTCAAAAAAAAAATTG
Found at i:1978930 original size:24 final size:21
Alignment explanation
Indices: 1978899--1978951 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
1978889 ATTATATAGT
* *
1978899 TTTTATTTACATTATATTTATTTA
1 TTTTATTTA-ACT-TATTT-TTAA
1978923 TTTTATTTAACTTATTTTTAA
1 TTTTATTTAACTTATTTTTAA
1978944 TTTTATTT
1 TTTTATTT
1978952 TTTGGTCCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 11 0.41
22 5 0.19
23 2 0.07
24 9 0.33
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTATTTAACTTATTTTTAA
Found at i:1989397 original size:16 final size:16
Alignment explanation
Indices: 1989376--1989415 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
1989366 TTTTAAATTT
*
1989376 TTTTATTACATTTTTA
1 TTTTATTACATTTTGA
*
1989392 TTTTATTTCATTTTGA
1 TTTTATTACATTTTGA
1989408 TTATTATT
1 TT-TTATT
1989416 TTCTTAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTTATTACATTTTGA
Found at i:1989444 original size:15 final size:14
Alignment explanation
Indices: 1989424--1989454 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
1989414 TTTTCTTAGC
1989424 TTTTTTAATAATTTT
1 TTTTTTAA-AATTTT
1989439 TTTTTTAAAATTTT
1 TTTTTTAAAATTTT
1989453 TT
1 TT
1989455 AACATATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAAAATTTT
Found at i:1992649 original size:15 final size:15
Alignment explanation
Indices: 1992629--1992659 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1992619 TTGAAAATCA
1992629 TAATACGTATAGTTT
1 TAATACGTATAGTTT
1992644 TAATACGTATAGTTT
1 TAATACGTATAGTTT
1992659 T
1 T
1992660 TATGAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (15 bp):
TAATACGTATAGTTT
Found at i:1993090 original size:20 final size:20
Alignment explanation
Indices: 1993061--1993098 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1993051 CCCCTTCAAA
*
1993061 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
1993081 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
1993099 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:1999395 original size:25 final size:26
Alignment explanation
Indices: 1999339--1999396 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
1999329 ACATGTAACT
1999339 TATAAAATGATTTATCAGTATGCAGA
1 TATAAAATGATTTATCAGTATGCAGA
*
1999365 AATAAAATAGATTT-TCAG-ACT-CAGA
1 TATAAAAT-GATTTATCAGTA-TGCAGA
1999390 TATAAAA
1 TATAAAA
1999397 CAAAATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 11 0.39
26 12 0.43
27 5 0.18
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (26 bp):
TATAAAATGATTTATCAGTATGCAGA
Found at i:2004490 original size:24 final size:24
Alignment explanation
Indices: 2004463--2004545 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
2004453 CAAAACACAA
*
2004463 AACATAATTCAGATCAGATATCAG
1 AACAGAATTCAGATCAGATATCAG
* * *
2004487 AACATAATCCAGGTCAGGA-ATCAG
1 AACAGAATTCAGATCA-GATATCAG
* * *
2004511 AATAGATTTCAGATCAGATGTCAG
1 AACAGAATTCAGATCAGATATCAG
2004535 AACAGAATTCA
1 AACAGAATTCA
2004546 AATCGAAAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 2 0.04
24 43 0.91
25 2 0.04
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (24 bp):
AACAGAATTCAGATCAGATATCAG
Found at i:2006109 original size:19 final size:20
Alignment explanation
Indices: 2006076--2006121 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
2006066 AAGCAAAACT
2006076 AGTA-TTTTCCGTACACATC
1 AGTAGTTTTCCGTACACATC
*
2006095 GGTAGTTTT-CGTACACATC
1 AGTAGTTTTCCGTACACATC
2006114 AGTAGTTT
1 AGTAGTTT
2006122 CATCAGATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
AGTAGTTTTCCGTACACATC
Found at i:2010287 original size:23 final size:22
Alignment explanation
Indices: 2010220--2010320 Score: 91
Period size: 23 Copynumber: 4.5 Consensus size: 22
2010210 AAGTATATTT
** *
2010220 ATAATATTATGAAATTATATTAA
1 ATAATATTATTTATTTAT-TTAA
*
2010243 AT-AT-TTATTTAATTT-TTAAA
1 ATAATATTATTT-ATTTATTTAA
*
2010263 ATCATATTATTTATTTATTTCAA
1 ATAATATTATTTATTTATTT-AA
*
2010286 ATAATATTAATTATTTACTTTAA
1 ATAATATTATTTATTTA-TTTAA
2010309 ATAATATTATTT
1 ATAATATTATTT
2010321 TTAAACTATC
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
20 5 0.08
21 11 0.17
22 13 0.20
23 32 0.50
24 3 0.05
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (22 bp):
ATAATATTATTTATTTATTTAA
Found at i:2014051 original size:59 final size:59
Alignment explanation
Indices: 2013959--2014077 Score: 184
Period size: 59 Copynumber: 2.0 Consensus size: 59
2013949 ATTCTCTTGC
*
2013959 TCAATGAGCTTTGTCAAGAATCAATCATTTTTATTTCATATTTGATGTACCAGAATGTA
1 TCAATGAGCTTTGCCAAGAATCAATCATTTTTATTTCATATTTGATGTACCAGAATGTA
* * * **
2014018 TCAATGGGTTTTGCCAAGAATCAATCATTTTTATTTCATCTTTGATGTACTGGAATGTA
1 TCAATGAGCTTTGCCAAGAATCAATCATTTTTATTTCATATTTGATGTACCAGAATGTA
2014077 T
1 T
2014078 ATAACTAACG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (59 bp):
TCAATGAGCTTTGCCAAGAATCAATCATTTTTATTTCATATTTGATGTACCAGAATGTA
Found at i:2014285 original size:31 final size:31
Alignment explanation
Indices: 2014249--2014313 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
2014239 GCAATACAAT
* *
2014249 CCCCAATATTTAGTCCATTAGTAATATGATC
1 CCCCAACATTTAGTCCATTAGCAATATGATC
* * *
2014280 CCCCAACATTTAGTCCGTTTGCAATATGGTC
1 CCCCAACATTTAGTCCATTAGCAATATGATC
2014311 CCC
1 CCC
2014314 GACATAACTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (31 bp):
CCCCAACATTTAGTCCATTAGCAATATGATC
Found at i:2017690 original size:31 final size:31
Alignment explanation
Indices: 2017636--2017759 Score: 112
Period size: 31 Copynumber: 4.0 Consensus size: 31
2017626 TAATGATAGA
* *
2017636 TTTGATAAGTTGAAAGA-TCATTTTTTAACAG
1 TTTGATAAGTTTAATGACT-ATTTTTTAACAG
*
2017667 TTTAATAAGTTTAATGACTATTTTTT-ACTAG
1 TTTGATAAGTTTAATGACTATTTTTTAAC-AG
* * *
2017698 TTTGATAAATCTTAATGA-TCATTTTATAA-TG
1 TTTGATAAGT-TTAATGACT-ATTTTTTAACAG
*
2017729 ATTTGATAAGTTTAATGACTATTTTGTAACA
1 -TTTGATAAGTTTAATGACTATTTTTTAACA
2017760 TATAAAACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
30 2 0.03
31 48 0.64
32 24 0.32
33 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (31 bp):
TTTGATAAGTTTAATGACTATTTTTTAACAG
Found at i:2025422 original size:32 final size:32
Alignment explanation
Indices: 2025386--2025462 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
2025376 CGGGGCCACG
* *
2025386 GGGCCTACCTAAGAACAT-ATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ATGATCTCAAGGCCGCA
**
2025418 GGGCCTACCCGAG-AATGATCTCAAGGCCGCA
1 GGGCCTACCTAAGAAATGATCTCAAGGCCGCA
*
2025449 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
2025463 GTCACATTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
30 2 0.06
31 23 0.64
32 11 0.31
ACGTcount: A:0.29, C:0.30, G:0.26, T:0.16
Consensus pattern (32 bp):
GGGCCTACCTAAGAAATGATCTCAAGGCCGCA
Found at i:2031586 original size:18 final size:18
Alignment explanation
Indices: 2031565--2031608 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
2031555 TTAAAGCATC
2031565 TAGTTCATTGAATAAAGT
1 TAGTTCATTGAATAAAGT
*
2031583 TAGTTCATTGAATAATGT
1 TAGTTCATTGAATAAAGT
2031601 TAGTTCAT
1 TAGTTCAT
2031609 CAATCAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (18 bp):
TAGTTCATTGAATAAAGT
Found at i:2034563 original size:80 final size:82
Alignment explanation
Indices: 2034498--2034664 Score: 228
Period size: 84 Copynumber: 2.0 Consensus size: 82
2034488 TTATATAAAT
* *
2034498 GCCGATAAATAC-TGTACATACATGGCGTTTTATACAAACGCCACTAATTACACGTACATACGTG
1 GCCGATAAATACAGGTACATACATGGCATTTTATACAAACGCCACTAATTACACGTACATACGTG
2034562 GCATTTTAAGCACAAAC
66 GCATTTTAAGCACAAAC
* * * **
2034579 GCCGCTAATTACAGGTACATACGTGGCATTTTATGCACAAACGCTGCTAATTACACGTACATACG
1 GCCGATAAATACAGGTACATACATGGCATTTTAT--ACAAACGCCACTAATTACACGTACATACG
* *
2034644 TGGCATTTTATGTACAAAC
64 TGGCATTTTAAGCACAAAC
2034663 GC
1 GC
2034665 TGCGAATTAC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
81 10 0.14
82 18 0.24
84 46 0.62
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (82 bp):
GCCGATAAATACAGGTACATACATGGCATTTTATACAAACGCCACTAATTACACGTACATACGTG
GCATTTTAAGCACAAAC
Found at i:2034587 original size:42 final size:42
Alignment explanation
Indices: 2034531--2034805 Score: 247
Period size: 42 Copynumber: 6.6 Consensus size: 42
2034521 GGCGTTTTAT
*
2034531 ACAAACGCCACTAATTACACGTAC-ATACGTGGCATTTTAAGC
1 ACAAACGCCGCTAATTACACGTACTATA-GTGGCATTTTAAGC
* *
2034573 ACAAACGCCGCTAATTACAGGTAC-ATACGTGGCATTTTATGC
1 ACAAACGCCGCTAATTACACGTACTATA-GTGGCATTTTAAGC
* * *
2034615 ACAAACGCTGCTAATTACACGTAC-ATACGTGGCATTTTATGT
1 ACAAACGCCGCTAATTACACGTACTATA-GTGGCATTTTAAGC
* * * * *
2034657 ACAAACGCTGCGAATTACACGTACTATAGTGGCGTTTTTA-T
1 ACAAACGCCGCTAATTACACGTACTATAGTGGCATTTTAAGC
* * * ** * *
2034698 ATAAACGCCGATAAATA-TTGTACGT-TAGTGGCGTTTTAAGT
1 ACAAACGCCGCTAATTACACGTAC-TATAGTGGCATTTTAAGC
* * * * *
2034739 ACAAACGCCACTAATTACACGTTCTTTAGTGGCGTTTTATGC
1 ACAAACGCCGCTAATTACACGTACTATAGTGGCATTTTAAGC
* *
2034781 AAAAATGCCGCTAATTACACGTACT
1 ACAAACGCCGCTAATTACACGTACT
2034806 CTAGCTAGTT
Statistics
Matches: 197, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
40 17 0.09
41 29 0.15
42 148 0.75
43 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (42 bp):
ACAAACGCCGCTAATTACACGTACTATAGTGGCATTTTAAGC
Found at i:2034872 original size:128 final size:124
Alignment explanation
Indices: 2034613--2034904 Score: 343
Period size: 128 Copynumber: 2.3 Consensus size: 124
2034603 GGCATTTTAT
* * * * * *
2034613 GCACAAACGCTGCTAATTACACGTAC-ATACGTGGCATTTTATGTACAAACGCTGCGAATTACAC
1 GCACAAACGCCGCTAATTACACGTACTTTA-GTGGCGTTTTATGCAAAAACGCCGCGAATTACAC
* * * * **
2034677 GTACTATAGTGGCGTTTTTATATAAACGCCGATAAATATTGTACGTTAGTGGCGTTTTAA
65 GTACTATAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
* * * * *
2034737 GTACAAACGCCACTAATTACACGTTCTTTAGTGGCGTTTTATGCAAAAATGCCGCTAATTACACG
1 GCACAAACGCCGCTAATTACACGTACTTTAGTGGCGTTTTATGCAAAAACGCCGCGAATTACACG
* * *
2034802 TACTCTAGCTAGTTGCATTTTTATATAAACACTGAGAAATATTATACTTTAGTGGCGTTGCAA
66 TA--CTA--TAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
*
2034865 GCACAAACGCCGCTAATTACACGTACTTTAGTGGTGTTTT
1 GCACAAACGCCGCTAATTACACGTACTTTAGTGGCGTTTT
2034905 TAATATAAAC
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
124 53 0.38
125 2 0.01
126 3 0.02
128 81 0.58
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (124 bp):
GCACAAACGCCGCTAATTACACGTACTTTAGTGGCGTTTTATGCAAAAACGCCGCGAATTACACG
TACTATAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
Found at i:2034915 original size:42 final size:42
Alignment explanation
Indices: 2034387--2034948 Score: 193
Period size: 42 Copynumber: 13.5 Consensus size: 42
2034377 AGAAAATAAT
* * * * *
2034387 GTACTTTAGTGGCG-TTTTAAGCACAAACGCCGTTAATTCCAT
1 GTACTTTAGTGGCGTTTTTAA-TATAAACGCCGCTAATTACAC
* * * * * **
2034429 GTACTTCACTGGCG--TTTAACGTACAAATGCCACTAATTATTC
1 GTACTTTAGTGGCGTTTTTAA--TATAAACGCCGCTAATTACAC
* * * * * *
2034471 GCACTATAGTGGCGTTTTT-ATATAAATGCCGATAAATAC-T
1 GTACTTTAGTGGCGTTTTTAATATAAACGCCGCTAATTACAC
* * * *
2034511 GTAC-ATACATGGCG-TTTT-ATACAAACGCCACTAATTACAC
1 GTACTTTA-GTGGCGTTTTTAATATAAACGCCGCTAATTACAC
* * * * *
2034551 GTAC-ATACGTGGC-ATTTTAAGCACAAACGCCGCTAATTACAG
1 GTACTTTA-GTGGCGTTTTTAA-TATAAACGCCGCTAATTACAC
* * * *
2034593 GTAC-ATACGTGGC-ATTTT-ATGCACAAACGCTGCTAATTACAC
1 GTACTTTA-GTGGCGTTTTTAAT--ATAAACGCCGCTAATTACAC
* * * * * *
2034635 GTAC-ATACGTGGC-ATTTTATGTACAAACGCTGCGAATTACAC
1 GTACTTTA-GTGGCGTTTTTA-ATATAAACGCCGCTAATTACAC
* * * **
2034677 GTACTATAGTGGCGTTTTT-ATATAAACGCCGATAAATA-TT
1 GTACTTTAGTGGCGTTTTTAATATAAACGCCGCTAATTACAC
* * *
2034717 GTACGTTAGTGGCG-TTTTAAGTACAAACGCCACTAATTACAC
1 GTACTTTAGTGGCGTTTTTAA-TATAAACGCCGCTAATTACAC
* * *
2034759 GTTCTTTAGTGGCG-TTTT-ATGCAAAAATGCCGCTAATTACAC
1 GTACTTTAGTGGCGTTTTTAAT--ATAAACGCCGCTAATTACAC
* * * * ** * *
2034801 GTACTCTAGCTAGTTGCATTTTT-ATATAAACACTGAGAAATATTA-
1 GTACT-T---TAGTGGCGTTTTTAATATAAACGCCGCTAATTA-CAC
** * *
2034846 -TACTTTAGTGGCG-TTGCAAGCACAAACGCCGCTAATTACAC
1 GTACTTTAGTGGCGTTTTTAA-TATAAACGCCGCTAATTACAC
* *
2034887 GTACTTTAGTGGTGTTTTTAATATAAACGCCGCTAAATACTA-
1 GTACTTTAGTGGCGTTTTTAATATAAACGCCGCTAATTAC-AC
*
2034929 GTACTTTAGTGGTGTTTTTA
1 GTACTTTAGTGGCGTTTTTA
2034949 GAAAAAACGA
Statistics
Matches: 401, Mismatches: 88, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
39 28 0.07
40 46 0.11
41 60 0.15
42 221 0.55
43 15 0.04
44 8 0.02
45 10 0.02
46 7 0.02
47 6 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (42 bp):
GTACTTTAGTGGCGTTTTTAATATAAACGCCGCTAATTACAC
Found at i:2034919 original size:128 final size:122
Alignment explanation
Indices: 2034613--2034940 Score: 311
Period size: 128 Copynumber: 2.6 Consensus size: 122
2034603 GGCATTTTAT
* * * * * * *
2034613 GCACAAACGCTGCTAATTACACGTAC-ATACGTGGCATTTTATGTACAAACGCTGCGAATTACAC
1 GCACAAACGCCGCTAATTACACGTACTTTA-GTGG-GTTTTA-ATAAAAACGCCGCTAATTACAC
* * * * **
2034677 GTACTATAGTGGCGTTTTTATATAAACGCCGATAAATATTGTACGTTAGTGGCGTTTTAA
63 GTACTATAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
* * * *
2034737 GTACAAACGCCACTAATTACACGTTCTTTAGTGGCGTTTT-ATGCAAAAATGCCGCTAATTACAC
1 GCACAAACGCCGCTAATTACACGTACTTTAGTGG-GTTTTAAT--AAAAACGCCGCTAATTACAC
* * *
2034801 GTACTCTAGCTAGTTGCATTTTTATATAAACACTGAGAAATATTATACTTTAGTGGCGTTGCAA
63 GTA--CTA--TAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
* *
2034865 GCACAAACGCCGCTAATTACACGTACTTTAGTGGTGTTTTTAATATAAACGCCGCTAAATACTA-
1 GCACAAACGCCGCTAATTACACGTACTTTAGTGG-G-TTTTAATAAAAACGCCGCTAATTAC-AC
*
2034929 GTACTTTAGTGG
63 GTACTATAGTGG
2034941 TGTTTTTAGA
Statistics
Matches: 165, Mismatches: 29, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
122 1 0.01
124 55 0.33
125 2 0.01
126 5 0.03
128 95 0.58
129 5 0.03
130 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (122 bp):
GCACAAACGCCGCTAATTACACGTACTTTAGTGGGTTTTAATAAAAACGCCGCTAATTACACGTA
CTATAGTGGCATTTTTATATAAACACCGAGAAATATTATACGTTAGTGGCGTTGCAA
Found at i:2034957 original size:42 final size:42
Alignment explanation
Indices: 2034869--2034957 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
2034859 TTGCAAGCAC
* *
2034869 AAACGCCGCTAATTACACGTACTTTAGTGGTGTTTTTAATAT
1 AAACGCCGCTAAATACACGTACTTTAGTGGTGTTTTTAATAA
2034911 AAACGCCGCTAAATACTA-GTACTTTAGTGGTGTTTTTAGA-AA
1 AAACGCCGCTAAATAC-ACGTACTTTAGTGGTGTTTTTA-ATAA
2034953 AAACG
1 AAACG
2034958 ATCGTCTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 41 0.95
43 2 0.05
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (42 bp):
AAACGCCGCTAAATACACGTACTTTAGTGGTGTTTTTAATAA
Found at i:2043371 original size:21 final size:21
Alignment explanation
Indices: 2043324--2043393 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
2043314 AGAGGAAAAT
2043324 GAAGCAAG-GGAAGCAGAGAGA
1 GAAGC-AGTGGAAGCAGAGAGA
* *
2043345 GCAGCAGTGGAAGCAGAGAAA
1 GAAGCAGTGGAAGCAGAGAGA
*
2043366 GAAGCAGT-GATAGCATAGAGA
1 GAAGCAGTGGA-AGCAGAGAGA
2043387 GAAGCAG
1 GAAGCAG
2043394 CATATCAGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 4 0.10
21 38 0.90
ACGTcount: A:0.44, C:0.11, G:0.39, T:0.06
Consensus pattern (21 bp):
GAAGCAGTGGAAGCAGAGAGA
Found at i:2043862 original size:43 final size:43
Alignment explanation
Indices: 2043814--2043929 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
2043804 CGTTGTATGG
2043814 AAACGCCGCTAAATCTCAACACCTATTACGGCATTTTCAATAA
1 AAACGCCGCTAAATCTCAACACCTATTACGGCATTTTCAATAA
* * * ** ** * *
2043857 AAACGCCACTAATTCTCAACACTTATTGTGTTATTTTCGATAC
1 AAACGCCGCTAAATCTCAACACCTATTACGGCATTTTCAATAA
* * * *
2043900 AAATGCCGCTAAATCTAAAAACCTACTACG
1 AAACGCCGCTAAATCTCAACACCTATTACG
2043930 TCGTTTGTGG
Statistics
Matches: 55, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAATCTCAACACCTATTACGGCATTTTCAATAA
Found at i:2044071 original size:31 final size:31
Alignment explanation
Indices: 2044033--2044094 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
2044023 AGGGAAAACG
* * *
2044033 CCGCTAAACATCAACACCTATTGCGGCGTTT
1 CCGCTAAACAACAAAACCTATTGCGACGTTT
*
2044064 CCGCTAAATAACAAAACCTATTGCGACGTTT
1 CCGCTAAACAACAAAACCTATTGCGACGTTT
2044095 GTGGAAAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (31 bp):
CCGCTAAACAACAAAACCTATTGCGACGTTT
Found at i:2044171 original size:41 final size:42
Alignment explanation
Indices: 2044126--2044215 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 42
2044116 TCAAAACCTT
*
2044126 TGCGGCGTTTGTAAGTAAAA-CCGCTAAATC-TCAACACATAC
1 TGCGGCGTTTGTAAGGAAAACCCGCTAAA-CATCAACACATAC
* * *
2044167 TGCGGCGTTTGTAGGGAAAACGCCGCTAAACATCAACACCTAT
1 TGCGGCGTTTGTAAGGAAAAC-CCGCTAAACATCAACACATAC
2044210 TGCGGC
1 TGCGGC
2044216 ATTTCCGCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 18 0.43
42 1 0.02
43 23 0.55
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (42 bp):
TGCGGCGTTTGTAAGGAAAACCCGCTAAACATCAACACATAC
Found at i:2044198 original size:156 final size:158
Alignment explanation
Indices: 2043917--2044244 Score: 552
Period size: 156 Copynumber: 2.1 Consensus size: 158
2043907 GCTAAATCTA
* * * * *
2043917 AAAACCTACTACGTCGTTTGTGGAAAAACGCTGCAAAATATCAAAATCTTCTGCGGCGTTTGTAA
1 AAAACCTATTGCGACGTTTGTGGAAAAACGCCGCAAAATATCAAAACCTTCTGCGGCGTTTGTAA
2043982 GTAAAATGCCGCTAAATCTCAACACATACTAAGGAGTTTGTAGGGAAAACGCCGCTAAACATCAA
66 GTAAAA-GCCGCTAAATCTCAACACATACTAAGGAGTTTGTAGGGAAAACGCCGCTAAACATCAA
*
2044047 CACCTATTGCGGCGTTTCCGCTAAATAAC
130 CACCTATTGCGGCATTTCCGCTAAATAAC
2044076 AAAACCTATTGCGACGTTTGTGGAAAAACGCCGCAAAATATCAAAACCTT-TGCGGCGTTTGTAA
1 AAAACCTATTGCGACGTTTGTGGAAAAACGCCGCAAAATATCAAAACCTTCTGCGGCGTTTGTAA
** *
2044140 GTAAAA-CCGCTAAATCTCAACACATACTGCGGCGTTTGTAGGGAAAACGCCGCTAAACATCAAC
66 GTAAAAGCCGCTAAATCTCAACACATACTAAGGAGTTTGTAGGGAAAACGCCGCTAAACATCAAC
2044204 ACCTATTGCGGCATTTCCGCTAAATAAC
131 ACCTATTGCGGCATTTCCGCTAAATAAC
2044232 AAAACCTATTGCG
1 AAAACCTATTGCG
2044245 GCTTTCTTTG
Statistics
Matches: 160, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
156 95 0.59
158 20 0.12
159 45 0.28
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (158 bp):
AAAACCTATTGCGACGTTTGTGGAAAAACGCCGCAAAATATCAAAACCTTCTGCGGCGTTTGTAA
GTAAAAGCCGCTAAATCTCAACACATACTAAGGAGTTTGTAGGGAAAACGCCGCTAAACATCAAC
ACCTATTGCGGCATTTCCGCTAAATAAC
Found at i:2044214 original size:43 final size:43
Alignment explanation
Indices: 2044064--2044215 Score: 152
Period size: 41 Copynumber: 3.6 Consensus size: 43
2044054 TGCGGCGTTT
* * *
2044064 CCGCTAAATAACAAAACCTATTGCGACGTTTGT-GGAAAAACG
1 CCGCTAAACATCAAAACCTATTGCGGCGTTTGTAGGAAAAACG
* * * *
2044106 CCGCAAAATATCAAAACCT-TTGCGGCGTTTGTAAGTAAAA--
1 CCGCTAAACATCAAAACCTATTGCGGCGTTTGTAGGAAAAACG
* * * *
2044146 CCGCTAAATC-TCAACACATACTGCGGCGTTTGTAGGGAAAACG
1 CCGCTAAA-CATCAAAACCTATTGCGGCGTTTGTAGGAAAAACG
*
2044189 CCGCTAAACATCAACACCTATTGCGGC
1 CCGCTAAACATCAAAACCTATTGCGGC
2044216 ATTTCCGCTA
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
40 14 0.16
41 30 0.33
42 23 0.26
43 23 0.26
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (43 bp):
CCGCTAAACATCAAAACCTATTGCGGCGTTTGTAGGAAAAACG
Found at i:2044227 original size:31 final size:30
Alignment explanation
Indices: 2044189--2044250 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
2044179 AGGGAAAACG
* *
2044189 CCGCTAAACATCAACACCTATTGCGGCATTT
1 CCGCTAAACAACAAAACCTATTGCGGC-TTT
*
2044220 CCGCTAAATAACAAAACCTATTGCGGCTTT
1 CCGCTAAACAACAAAACCTATTGCGGCTTT
2044250 C
1 C
2044251 TTTGTCAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (30 bp):
CCGCTAAACAACAAAACCTATTGCGGCTTT
Found at i:2046050 original size:18 final size:18
Alignment explanation
Indices: 2046027--2046071 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
2046017 TAGTTTGATT
2046027 AATGAACTAACATTATTC
1 AATGAACTAACATTATTC
*
2046045 AATGAACTAACTTTATTC
1 AATGAACTAACATTATTC
2046063 AATGAACTA
1 AATGAACTA
2046072 GATTCTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (18 bp):
AATGAACTAACATTATTC
Found at i:2056403 original size:13 final size:13
Alignment explanation
Indices: 2056385--2056410 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2056375 TCTCAAATAT
2056385 GCTCTTCTTTGAA
1 GCTCTTCTTTGAA
2056398 GCTCTTCTTTGAA
1 GCTCTTCTTTGAA
2056411 ACCCAGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
GCTCTTCTTTGAA
Found at i:2057292 original size:42 final size:42
Alignment explanation
Indices: 2057236--2057531 Score: 524
Period size: 42 Copynumber: 7.1 Consensus size: 42
2057226 TCGCAACGCA
* * *
2057236 ATAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
2057278 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAA-TCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
*
2057319 ATAGTCGAAGTTCGCGTTGCGATTCATTCC-AATTCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
2057360 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
*
2057402 ATAGGCGAAGTTCGTGTTGCGATTCATTCCAAATTCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
2057444 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
*
2057486 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTTGTTGCG
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
2057528 ATAG
1 ATAG
2057532 TCCAAATATT
Statistics
Matches: 244, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
40 2 0.01
41 74 0.30
42 168 0.69
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.32
Consensus pattern (42 bp):
ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
Found at i:2057317 original size:20 final size:20
Alignment explanation
Indices: 2057292--2057487 Score: 93
Period size: 21 Copynumber: 9.4 Consensus size: 20
2057282 GCGAAGTTCG
*
2057292 CGTTGCGATTCATTCCAAAT
1 CGTTGCGATTCATTCCAATT
* *
2057312 CGTTGCGA-T-AGTCGAAGTT
1 CGTTGCGATTCATTCCAA-TT
2057331 CGCGTTGCGATTCATTCCAATT
1 --CGTTGCGATTCATTCCAATT
** *
2057353 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAA-TT
2057372 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCC-AATT
** *
2057395 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAA-TT
2057414 CGTGTTGCGATTCATTCCAAATT
1 C--GTTGCGATTCATTCC-AATT
** *
2057437 CGTTGCGA-T-AGGCGAAGTT
1 CGTTGCGATTCATTCCAA-TT
2057456 CGCGTTGCGATTCATTCCAAATT
1 --CGTTGCGATTCATTCC-AATT
2057479 CGTTGCGAT
1 CGTTGCGAT
2057488 AGGCGAAGTT
Statistics
Matches: 130, Mismatches: 23, Indels: 45
0.66 0.12 0.23
Matches are distributed among these distances:
18 13 0.10
19 14 0.11
20 18 0.14
21 55 0.42
22 6 0.05
23 18 0.14
24 6 0.05
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (20 bp):
CGTTGCGATTCATTCCAATT
Found at i:2057585 original size:126 final size:125
Alignment explanation
Indices: 2057236--2057538 Score: 383
Period size: 124 Copynumber: 2.4 Consensus size: 125
2057226 TCGCAACGCA
* * * * * *
2057236 ATAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCGTTGCGATAGGCGAAGTTCGCGTTGCGAT
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCCAAATTCGCATTGCGAT
* ** * **
2057301 TCATTCCAAA-TCGTTGCGATAGTCGAAGTTCGCGTTGCGATTCATTCCAATTCGTTGCG
66 TCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCCAATTCGTTGCG
* * **
2057360 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCGAAGTTCGTGTTGCGAT
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCCAAATTCGCATTGCGAT
* ** * *
2057425 TCATTCCAAATTCGTTGCGATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCG
66 TCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCC-AATTCGTTGCG
* *
2057486 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTTGTTGCGATAGTCCAAAT
1 ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCCAAAT
2057539 ATTGCATTTG
Statistics
Matches: 168, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
124 71 0.42
125 37 0.22
126 60 0.36
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.32
Consensus pattern (125 bp):
ATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATTCGTTGCGATAGGCCAAATTCGCATTGCGAT
TCATTCAAAATTCGTTGAAAAAGGAGAAGTTCGCGTTGCGATTCATTCCAATTCGTTGCG
Found at i:2057634 original size:12 final size:12
Alignment explanation
Indices: 2057609--2057653 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
2057599 GACACGTATT
* *
2057609 ACCACGGCCACG
1 ACCACGACCCCG
2057621 ACCACGACCCCG
1 ACCACGACCCCG
*
2057633 ACCCCGACCCCG
1 ACCACGACCCCG
2057645 ACC-CGACCC
1 ACCACGACCC
2057654 GGGACGGGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 6 0.20
12 24 0.80
ACGTcount: A:0.22, C:0.60, G:0.18, T:0.00
Consensus pattern (12 bp):
ACCACGACCCCG
Found at i:2057646 original size:18 final size:17
Alignment explanation
Indices: 2057619--2057653 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
2057609 ACCACGGCCA
2057619 CGACCACGACCCCGACCC
1 CGACCACGA-CCCGACCC
*
2057637 CGACCCCGACCCGACCC
1 CGACCACGACCCGACCC
2057654 GGGACGGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.63, G:0.17, T:0.00
Consensus pattern (17 bp):
CGACCACGACCCGACCC
Found at i:2058533 original size:20 final size:20
Alignment explanation
Indices: 2058508--2058617 Score: 75
Period size: 20 Copynumber: 5.4 Consensus size: 20
2058498 ACTTTGCCTG
2058508 TCGCAACGAATTGGAATGAA
1 TCGCAACGAATTGGAATGAA
* **
2058528 TCGCAATGCGAACTTCGCCTG--
1 TCGCAA--CGAA-TTGGAATGAA
2058549 TCGCAACGAATTGGAATGAA
1 TCGCAACGAATTGGAATGAA
* **
2058569 TCGCAACGCGAACTTCGCCT--A
1 TCGCAA--CGAA-TTGGAATGAA
*
2058590 TCGCAACGATTTGGAATGAA
1 TCGCAACGAATTGGAATGAA
2058610 TCGCAACG
1 TCGCAACG
2058618 CGAACTTCAA
Statistics
Matches: 67, Mismatches: 13, Indels: 20
0.67 0.13 0.20
Matches are distributed among these distances:
18 9 0.13
19 7 0.10
20 21 0.31
21 13 0.19
22 8 0.12
23 9 0.13
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.21
Consensus pattern (20 bp):
TCGCAACGAATTGGAATGAA
Found at i:2058539 original size:41 final size:41
Alignment explanation
Indices: 2058438--2058625 Score: 304
Period size: 41 Copynumber: 4.6 Consensus size: 41
2058428 GTAATATTTT
* * *
2058438 GAATGAATCGCAACGCAAACTTCGCCTGTCGCAATGAATTTA
1 GAATGAATCGCAACGCGAACTTCGCCTGTCGCAACGAA-TTG
*
2058480 GAATGAATCGCAACGCGAACTTTGCCTGTCGCAACGAATTG
1 GAATGAATCGCAACGCGAACTTCGCCTGTCGCAACGAATTG
*
2058521 GAATGAATCGCAATGCGAACTTCGCCTGTCGCAACGAATTG
1 GAATGAATCGCAACGCGAACTTCGCCTGTCGCAACGAATTG
* *
2058562 GAATGAATCGCAACGCGAACTTCGCCTATCGCAACGATTTG
1 GAATGAATCGCAACGCGAACTTCGCCTGTCGCAACGAATTG
2058603 GAATGAATCGCAACGCGAACTTC
1 GAATGAATCGCAACGCGAACTTC
2058626 AACTATCGCT
Statistics
Matches: 137, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 102 0.74
42 35 0.26
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (41 bp):
GAATGAATCGCAACGCGAACTTCGCCTGTCGCAACGAATTG
Found at i:2061112 original size:2 final size:2
Alignment explanation
Indices: 2061105--2061135 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2061095 AGCTAATGTG
2061105 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2061136 TCGCTCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2067237 original size:94 final size:95
Alignment explanation
Indices: 2067085--2067257 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 95
2067075 TGAGGAAGGC
* * *
2067085 ATCGATACCATTGATTACAAAATGCAGAAATGGTATGGATACAGTAATAGAGTATCGGTACCATA
1 ATCGATACCATGGATTACAAAATGCAGAAATGGTATGGATACAGAAAGAGAGTATCGGTACCATA
*
2067150 GTATAGAAGTATCGGTACTAAGAGACAAAT
66 GTATAAAAGTATCGGTACTAAGAGACAAAT
* * * * *
2067180 ATCGATACCATGGA-TCCAAAATGTAGAAATTGTATCGG-TACTGAAAGGGAGTATCGGTACCAT
1 ATCGATACCATGGATTACAAAATGCAGAAATGGTAT-GGATACAGAAAGAGAGTATCGGTACCAT
2067243 AGTATAAAAGTATCG
65 AGTATAAAAGTATCG
2067258 ATACCATGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
94 53 0.78
95 15 0.22
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.25
Consensus pattern (95 bp):
ATCGATACCATGGATTACAAAATGCAGAAATGGTATGGATACAGAAAGAGAGTATCGGTACCATA
GTATAAAAGTATCGGTACTAAGAGACAAAT
Found at i:2073610 original size:54 final size:54
Alignment explanation
Indices: 2073278--2073599 Score: 482
Period size: 55 Copynumber: 5.9 Consensus size: 54
2073268 TTTCACTATA
*
2073278 TGTGCAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
1 TGTGCAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
*
2073332 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTTGTATGGGCACTGTG
1 TGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
* *
2073387 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCATATGTGCACTGTG
1 TGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
* *
2073442 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCATATGGGCATTGTG
1 TGTGC-AAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
* * * *
2073497 TGTGCAATCTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGACACTTTG
1 TGTGCAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
* * * * *
2073551 TGTGCAACCTAAGAAATTCATAATGAGTTTTTGAATTTCCGTATTGGCA
1 TGTGCAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCA
2073600 TTAGGTGTGC
Statistics
Matches: 249, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
54 92 0.37
55 157 0.63
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (54 bp):
TGTGCAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
Found at i:2073906 original size:49 final size:49
Alignment explanation
Indices: 2073833--2073946 Score: 142
Period size: 49 Copynumber: 2.3 Consensus size: 49
2073823 GAAAGAATAA
* * *
2073833 ATGCCTAACTGTGC-TATTTGGCAGAAAGGTGTCA-TCAATGCAAGATAG
1 ATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACT-AATGCAAGATAG
*
2073881 ATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAG
1 ATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGATAG
** *
2073930 ATGAATAATGGTGCATT
1 ATGCCTAACGGTGCATT
2073947 AACGACATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
48 13 0.23
49 43 0.75
50 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (49 bp):
ATGCCTAACGGTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGATAG
Found at i:2075381 original size:16 final size:17
Alignment explanation
Indices: 2075360--2075393 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
2075350 CGCTAATGTA
*
2075360 AATAAATTTA-AAATTT
1 AATAAATATATAAATTT
2075376 AATAAATATATAAATTT
1 AATAAATATATAAATTT
2075393 A
1 A
2075394 TTTTGAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AATAAATATATAAATTT
Found at i:2080663 original size:30 final size:28
Alignment explanation
Indices: 2080627--2080689 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 28
2080617 TTCATGGACA
2080627 GTTAACCGTACCATTTAGCCTAAATGGTCG
1 GTTAACC--ACCATTTAGCCTAAATGGTCG
2080657 GTT-A--ACCATTTAGCCTAAATGGTCG
1 GTTAACCACCATTTAGCCTAAATGGTCG
2080682 GTTAACCA
1 GTTAACCA
2080690 TTATAACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
25 24 0.80
26 1 0.03
28 1 0.03
29 1 0.03
30 3 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
GTTAACCACCATTTAGCCTAAATGGTCG
Found at i:2080670 original size:25 final size:25
Alignment explanation
Indices: 2080636--2080691 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
2080626 AGTTAACCGT
2080636 ACCATTTAGCCTAAATGGTCGGTTA
1 ACCATTTAGCCTAAATGGTCGGTTA
2080661 ACCATTTAGCCTAAATGGTCGGTTA
1 ACCATTTAGCCTAAATGGTCGGTTA
2080686 ACCATT
1 ACCATT
2080692 ATAACATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (25 bp):
ACCATTTAGCCTAAATGGTCGGTTA
Found at i:2085706 original size:54 final size:54
Alignment explanation
Indices: 2085311--2085690 Score: 573
Period size: 54 Copynumber: 7.1 Consensus size: 54
2085301 CTATGTGTAC
* *
2085311 TATAGG-ACTAAGTGTGCAACCCACAGAATTCATCATATCTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
** * *
2085364 TATAAACACTAAGTGTGCAATCCACGAAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
*
2085418 TATAGGCACTTAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
2085472 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
* * * *
2085526 TATAGGCACTAAGTGTGCAGCCCACGTAATTCATCATATATTGATGAACTACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
* * * *
2085580 TATAGGCAATAAGTGTGCAACCCACAGAATTCATTATATGTTGATGAATGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
* * * * *
2085634 TATAGGTACTAAGTGTGCAACCCAAGGAATTCATAATATGTTTATGAATGACCG
1 TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
2085688 TAT
1 TAT
2085691 CGACAATACT
Statistics
Matches: 296, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
53 4 0.01
54 292 0.99
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (54 bp):
TATAGGCACTAAGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACCG
Found at i:2091439 original size:20 final size:19
Alignment explanation
Indices: 2091396--2091439 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
2091386 ATATAGCTGC
* *
2091396 ATTTCACATTCTAACTTTA
1 ATTTCACATTCAAACATTA
*
2091415 GTTTCAACATTCAAACATTA
1 ATTTC-ACATTCAAACATTA
2091435 ATTTC
1 ATTTC
2091440 CAGCATAGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTCACATTCAAACATTA
Found at i:2095554 original size:22 final size:22
Alignment explanation
Indices: 2095512--2095555 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
2095502 TAGTTTAATA
*
2095512 TAATAATATTTATTCATACTAT
1 TAATAATATTTATGCATACTAT
*
2095534 TAATTATATTTAATGCA-ACTAT
1 TAATAATATTT-ATGCATACTAT
2095556 ATTAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATAATATTTATGCATACTAT
Found at i:2096112 original size:59 final size:59
Alignment explanation
Indices: 2096012--2096126 Score: 187
Period size: 59 Copynumber: 1.9 Consensus size: 59
2096002 TATGCACCGA
* **
2096012 AGTGCTAACCCGAATATGACACATAAGGTCGTGGCCACCATATGCACTAGGTATCCATT
1 AGTGCTAACCCGAATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCATT
2096071 AGTG-TAATCCCGAATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCC
1 AGTGCTAA-CCCGAATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCC
2096127 TTTATTGTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 3 0.06
59 49 0.94
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (59 bp):
AGTGCTAACCCGAATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCATT
Found at i:2096146 original size:59 final size:59
Alignment explanation
Indices: 2096024--2096146 Score: 174
Period size: 59 Copynumber: 2.1 Consensus size: 59
2096014 TGCTAACCCG
* ** **
2096024 AATATGACACATAAGGTCGTGGCCACCATATGCACTAGGTATCCATTAGTGTAATCCCG
1 AATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCATTAGTGTAATCCAA
* * *
2096083 AATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCTTTATTGTGATCCAA
1 AATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCATTAGTGTAATCCAA
2096142 AATAT
1 AATAT
2096147 ATGGCATGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (59 bp):
AATATGACACATAAGGTCATACCCACCATATGCACTAGGTATCCATTAGTGTAATCCAA
Found at i:2100025 original size:2 final size:2
Alignment explanation
Indices: 2100018--2100051 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2100008 TGTATAATTA
2100018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2100052 GTAATTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2101270 original size:20 final size:20
Alignment explanation
Indices: 2101245--2101296 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2101235 CTAAGGGGGA
2101245 GTATCGATACTATAACCT-TG
1 GTATCGATACTAT-ACCTCTG
* *
2101265 GTATCGATACTGTAGCTCTG
1 GTATCGATACTATACCTCTG
2101285 GTATCGATACTA
1 GTATCGATACTA
2101297 GAGGCAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (20 bp):
GTATCGATACTATACCTCTG
Found at i:2103311 original size:47 final size:48
Alignment explanation
Indices: 2103225--2103318 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 48
2103215 GATTTAATAT
2103225 TTATTAGGAATTAAGGTATAATTACAATTATTATCTTTATT-TTATTG
1 TTATTAGGAATTAAGGTATAATTACAATTATTATCTTTATTATTATTG
* * * *
2103272 TTATTAGGAATT-AGG-ATAGTATTGCTATTGTTATTTTTATTATTATT
1 TTATTAGGAATTAAGGTATA--ATTACAATTATTATCTTTATTATTATT
2103319 TTCAAGCATT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
45 3 0.08
46 3 0.08
47 29 0.73
48 5 0.12
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.53
Consensus pattern (48 bp):
TTATTAGGAATTAAGGTATAATTACAATTATTATCTTTATTATTATTG
Found at i:2105084 original size:6 final size:6
Alignment explanation
Indices: 2105075--2105109 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
2105065 AATTAGGATA
* *
2105075 TTATTG TTATTG TTATTG TTATTT TTATTA TTATT
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATT
2105110 TTCAAGCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (6 bp):
TTATTG
Found at i:2110842 original size:28 final size:28
Alignment explanation
Indices: 2110810--2110871 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 28
2110800 GAATGAATTC
2110810 TGAAATGTGAAAGCACTCATTATGAAAA
1 TGAAATGTGAAAGCACTCATTATGAAAA
*
2110838 TGAAA--T----GCACTCATTATTAAAA
1 TGAAATGTGAAAGCACTCATTATGAAAA
2110860 TGAAATGTGAAA
1 TGAAATGTGAAA
2110872 TGAATATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 12
0.68 0.03 0.30
Matches are distributed among these distances:
22 20 0.74
24 1 0.04
26 1 0.04
28 5 0.19
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.27
Consensus pattern (28 bp):
TGAAATGTGAAAGCACTCATTATGAAAA
Found at i:2110847 original size:22 final size:22
Alignment explanation
Indices: 2110817--2110866 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
2110807 TTCTGAAATG
2110817 TGAAA-GCACTCATTATGAAAA
1 TGAAATGCACTCATTATGAAAA
*
2110838 TGAAATGCACTCATTATTAAAA
1 TGAAATGCACTCATTATGAAAA
2110860 TGAAATG
1 TGAAATG
2110867 TGAAATGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (22 bp):
TGAAATGCACTCATTATGAAAA
Found at i:2119286 original size:26 final size:26
Alignment explanation
Indices: 2119247--2119310 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 26
2119237 TATATTCCCT
2119247 AAAAAATTCAAT-AAAACACGGAGGA
1 AAAAAATTCAATAAAAACACGGAGGA
* *
2119272 AAAATAATTCCATAAAAACAGGGAGGA
1 AAAA-AATTCAATAAAAACACGGAGGA
2119299 AAAACAATTCAA
1 AAAA-AATTCAA
2119311 GAAGTTTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 4 0.12
26 7 0.21
27 22 0.67
ACGTcount: A:0.59, C:0.12, G:0.14, T:0.14
Consensus pattern (26 bp):
AAAAAATTCAATAAAAACACGGAGGA
Found at i:2120949 original size:21 final size:21
Alignment explanation
Indices: 2120923--2120982 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
2120913 ACTAAAGGGA
2120923 AAGAAAGAAGAAAAAATAAAT
1 AAGAAAGAAGAAAAAATAAAT
* *
2120944 AAGAAAAGTA-AAAAAATTAAT
1 AAG-AAAGAAGAAAAAATAAAT
*
2120965 AA-AAGGAAG-AAAAATAAA
1 AAGAAAGAAGAAAAAATAAA
2120983 AGAGAGATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 12 0.38
21 15 0.47
22 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (21 bp):
AAGAAAGAAGAAAAAATAAAT
Found at i:2121867 original size:3 final size:3
Alignment explanation
Indices: 2121839--2121895 Score: 73
Period size: 3 Copynumber: 18.7 Consensus size: 3
2121829 AAACGAGAAA
2121839 AAT AAGT AA- AAT AA- AAT AAGT AAT AAT AAT AAAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT AAT
2121885 AAT AAT AAT AA
1 AAT AAT AAT AA
2121896 ATGAATATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.08
3 36 0.73
4 9 0.18
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:2121887 original size:25 final size:26
Alignment explanation
Indices: 2121848--2121902 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
2121838 AAATAAGTAA
2121848 AATAAAATAAGTAATAATAATAAAT-
1 AATAAAATAAGTAATAATAATAAATG
2121873 AATAATAATAA-TAATAATAATAAATG
1 AATAA-AATAAGTAATAATAATAAATG
2121899 AATA
1 AATA
2121903 TAAAACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (26 bp):
AATAAAATAAGTAATAATAATAAATG
Found at i:2122035 original size:31 final size:31
Alignment explanation
Indices: 2121956--2122034 Score: 124
Period size: 30 Copynumber: 2.5 Consensus size: 31
2121946 TTATATATTA
2121956 TATATTAATTTTCAAAAATGTTTTTAAAAAAC
1 TATA-TAATTTTCAAAAATGTTTTTAAAAAAC
**
2121988 TATATAATTTTCAAAAATGTTTTT-TTAAAC
1 TATATAATTTTCAAAAATGTTTTTAAAAAAC
2122018 TATATAATTTTCAAAAA
1 TATATAATTTTCAAAAA
2122035 AAAATTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 21 0.47
31 20 0.44
32 4 0.09
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (31 bp):
TATATAATTTTCAAAAATGTTTTTAAAAAAC
Found at i:2122106 original size:40 final size:37
Alignment explanation
Indices: 2122047--2122211 Score: 188
Period size: 38 Copynumber: 4.3 Consensus size: 37
2122037 AATTAAAATT
*
2122047 TATATATTATATATGTTTTCAAAATGTTTTTCAAAAAC
1 TATATATTATATATATTTTCAAAATG-TTTTCAAAAAC
2122085 TATATATTATATATTTATTTTCAAAATGTTTTC-AAAAC
1 TATATATTATATA--TATTTTCAAAATGTTTTCAAAAAC
*
2122123 TATATATTATATATATTTTAAAAATGTTTTCAAAAAC
1 TATATATTATATATATTTTCAAAATGTTTTCAAAAAC
* * * ** * *
2122160 TATACAATATATACATTTTCGAAAACCATTTTCTAGAAAT
1 TATATATTATATATATTTTC-AAAA-TGTTTTC-AAAAAC
2122200 TATATATTATAT
1 TATATATTATAT
2122212 CATTTCAGAA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
36 17 0.16
37 21 0.19
38 35 0.32
39 10 0.09
40 26 0.24
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (37 bp):
TATATATTATATATATTTTCAAAATGTTTTCAAAAAC
Found at i:2122966 original size:16 final size:16
Alignment explanation
Indices: 2122945--2122981 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
2122935 TCCATTAATT
2122945 CATTATGATC-CTTCA
1 CATTATGATCACTTCA
2122960 CCATTATGATCACTTCA
1 -CATTATGATCACTTCA
2122977 CATTA
1 CATTA
2122982 ATTACTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.38
Consensus pattern (16 bp):
CATTATGATCACTTCA
Found at i:2128203 original size:20 final size:20
Alignment explanation
Indices: 2128167--2128212 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
2128157 AACAATGCTG
*
2128167 GAAATT-AATGTTAGAATTTT
1 GAAATTGAATGTTAGAA-TGT
*
2128187 GAAATTGAA-GTTGGAATGT
1 GAAATTGAATGTTAGAATGT
2128206 GAAATTG
1 GAAATTG
2128213 GGTCACTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (20 bp):
GAAATTGAATGTTAGAATGT
Found at i:2129439 original size:21 final size:21
Alignment explanation
Indices: 2129415--2129541 Score: 141
Period size: 21 Copynumber: 6.1 Consensus size: 21
2129405 CCGTTAGACA
2129415 GGGGAATCGGTACCCCCTGGG
1 GGGGAATCGGTACCCCCTGGG
* * *
2129436 GGGGAATCTGTTCCCCCTGGA
1 GGGGAATCGGTACCCCCTGGG
* * *
2129457 GGGGAATCGATAACTCCT-GG
1 GGGGAATCGGTACCCCCTGGG
*
2129477 GGGGAATCGGTACCCCCTAGG
1 GGGGAATCGGTACCCCCTGGG
* *
2129498 GGGGAATCTGTTCCCCCT-GG
1 GGGGAATCGGTACCCCCTGGG
**
2129518 GGGGAATCTATACCCCCTGGG
1 GGGGAATCGGTACCCCCTGGG
2129539 GGG
1 GGG
2129542 AATTTGTTCC
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
20 34 0.39
21 54 0.61
ACGTcount: A:0.17, C:0.27, G:0.38, T:0.19
Consensus pattern (21 bp):
GGGGAATCGGTACCCCCTGGG
Found at i:2129493 original size:41 final size:39
Alignment explanation
Indices: 2129415--2129544 Score: 152
Period size: 41 Copynumber: 3.2 Consensus size: 39
2129405 CCGTTAGACA
*
2129415 GGGGAATCGGTACCCCCTGGGGGGGAATCTGTTCCCCCTGG
1 GGGGAATC-GTACCCCCT-GGGGGGAATCTGTACCCCCTGG
* * *
2129456 AGGGGAATCGATAACTCCTGGGGGGAATCGGTACCCCCTAGG
1 -GGGGAATCG-TACCCCCTGGGGGGAATCTGTACCCCCT-GG
* *
2129498 GGGGAATCTGTTCCCCCTGGGGGGAATCTATACCCCCTGG
1 GGGGAATC-GTACCCCCTGGGGGGAATCTGTACCCCCTGG
2129538 GGGGAAT
1 GGGGAAT
2129545 TTGTTCCCCC
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
40 9 0.12
41 50 0.66
42 17 0.22
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (39 bp):
GGGGAATCGTACCCCCTGGGGGGAATCTGTACCCCCTGG
Found at i:2129554 original size:20 final size:20
Alignment explanation
Indices: 2129415--2129557 Score: 162
Period size: 20 Copynumber: 7.0 Consensus size: 20
2129405 CCGTTAGACA
*
2129415 GGGGAATCGGTACCCCCTGGG
1 GGGGAATCTGTACCCCCT-GG
*
2129436 GGGGAATCTGTTCCCCCTGG
1 GGGGAATCTGTACCCCCTGG
* *
2129456 AGGGGAATC-GATAACTCCTGG
1 -GGGGAATCTG-TACCCCCTGG
*
2129477 GGGGAATCGGTACCCCCTAGG
1 GGGGAATCTGTACCCCCT-GG
*
2129498 GGGGAATCTGTTCCCCCTGG
1 GGGGAATCTGTACCCCCTGG
*
2129518 GGGGAATCTATACCCCCTGG
1 GGGGAATCTGTACCCCCTGG
* *
2129538 GGGGAATTTGTTCCCCCTGG
1 GGGGAATCTGTACCCCCTGG
2129558 ACAATCTGAT
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
20 54 0.52
21 50 0.48
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (20 bp):
GGGGAATCTGTACCCCCTGG
Found at i:2132979 original size:21 final size:20
Alignment explanation
Indices: 2132942--2133063 Score: 144
Period size: 20 Copynumber: 6.0 Consensus size: 20
2132932 CCGTTAGACA
2132942 GGGGGAATC-GATA-CCCCTGG
1 GGGGGAATCTG-TACCCCCT-G
*
2132962 GGGGGAATCTGTCCCCCCTG
1 GGGGGAATCTGTACCCCCTG
2132982 GGGGGAAT-TGGTACCCCCTG
1 GGGGGAATCT-GTACCCCCTG
*
2133002 GGGGGAATCAGTACCCCCTAG
1 GGGGGAATCTGTACCCCCT-G
*
2133023 GGGGGTATCTGTACCCCCTGG
1 GGGGGAATCTGTACCCCCT-G
2133044 GGGGGAATCTGT-CCCCCTG
1 GGGGGAATCTGTACCCCCTG
2133063 G
1 G
2133064 ACAATCTGAT
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
19 3 0.03
20 51 0.57
21 36 0.40
ACGTcount: A:0.15, C:0.29, G:0.38, T:0.19
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:2134743 original size:2 final size:2
Alignment explanation
Indices: 2134738--2134779 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
2134728 ATATTAAGAA
2134738 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2134780 TACATTGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2137971 original size:13 final size:13
Alignment explanation
Indices: 2137955--2137980 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2137945 TAAACCATAT
2137955 AAATAATGGTAAA
1 AAATAATGGTAAA
2137968 AAATAATGGTAAA
1 AAATAATGGTAAA
2137981 CATTTTCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (13 bp):
AAATAATGGTAAA
Found at i:2139064 original size:44 final size:45
Alignment explanation
Indices: 2138942--2139067 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 45
2138932 GATAAAATCT
*
2138942 CTTACCCTTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
2138987 CTTACCATTTAATCCCATAAGCTGGTAAGCTTATTTTACCAATATA
1 CTTACCATTT-ATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
2139033 CTTACCA-TTATTCCATAAGCTCGTATGCTTATTTT
1 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTT
2139068 CCAGTTTATC
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
44 23 0.31
45 11 0.15
46 40 0.54
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (45 bp):
CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:2141483 original size:4 final size:4
Alignment explanation
Indices: 2141474--2141498 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
2141464 CCTTAATCAG
2141474 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
2141499 TATGTACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:2143770 original size:23 final size:23
Alignment explanation
Indices: 2143726--2143770 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
2143716 TTAAAATTTC
* * **
2143726 TTTAAAAATATTTATTGTTGGTA
1 TTTAAAAATATATAATCATGGTA
2143749 TTTAAAAATATATAATCATGGT
1 TTTAAAAATATATAATCATGGT
2143771 TCAACAATCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (23 bp):
TTTAAAAATATATAATCATGGTA
Done.