Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008167.1 Hibiscus syriacus cultivar Beakdansim tig00110748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1661898
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 4 of 5
Found at i:1123020 original size:6 final size:6
Alignment explanation
Indices: 1122979--1123022 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
1122969 AAAAGCAACA
*
1122979 AAAAGAG AAAAAG AAAGAAG AAAAAC AAAAAG -AAAAG AAAAAG A
1 AAAA-AG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
1123023 CTCCTACATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
5 5 0.15
6 18 0.55
7 10 0.30
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:1124399 original size:16 final size:16
Alignment explanation
Indices: 1124378--1124410 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1124368 TTCTGCCACC
1124378 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
1124394 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
1124410 T
1 T
1124411 GAGCTAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (16 bp):
TATGTTAGAATGCAAA
Found at i:1127934 original size:16 final size:16
Alignment explanation
Indices: 1127913--1127945 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1127903 TTCTGCCACC
1127913 TATGTTAGAAAGCAAA
1 TATGTTAGAAAGCAAA
*
1127929 TATGTTAGAATGCAAA
1 TATGTTAGAAAGCAAA
1127945 T
1 T
1127946 GAGCTAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (16 bp):
TATGTTAGAAAGCAAA
Found at i:1128320 original size:16 final size:16
Alignment explanation
Indices: 1128286--1128334 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
1128276 GTAAGTTATC
* * *
1128286 TTCACTTTCTTACTAT
1 TTCATTTTCTTATTCT
1128302 TTCATTTTCTTATTCT
1 TTCATTTTCTTATTCT
1128318 TTCATCTATTCTTATTC
1 TTCAT-T-TTCTTATTC
1128335 CATTACCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCATTTTCTTATTCT
Found at i:1132572 original size:13 final size:12
Alignment explanation
Indices: 1132554--1132592 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
1132544 TAAAAGTAAC
1132554 AAAAAAGAGAAAA
1 AAAAAAGA-AAAA
1132567 AAAAAAGAATAAA
1 AAAAAAGAA-AAA
1132580 AAGAAAAGAAAAA
1 AA-AAAAGAAAAA
1132593 GACTCCTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.04
13 16 0.67
14 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (12 bp):
AAAAAAGAAAAA
Found at i:1132584 original size:20 final size:21
Alignment explanation
Indices: 1132556--1132594 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1132546 AAAGTAACAA
1132556 AAAAGAGAAAAAAAAAAGAAT
1 AAAAGAGAAAAAAAAAAGAAT
*
1132577 AAAA-AGAAAAGAAAAAGA
1 AAAAGAGAAAAAAAAAAGA
1132595 CTCCTACATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAAGAGAAAAAAAAAAGAAT
Found at i:1134457 original size:30 final size:31
Alignment explanation
Indices: 1134421--1134480 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
1134411 CTTAGCTTTA
*
1134421 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACATATGATTTAGATATCATT
* *
1134451 TATTATGTTTTCATTTGATTTAGATATCAT
1 TATTATGTTTACATATGATTTAGATATCAT
1134481 GGCAGTATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.57
Consensus pattern (31 bp):
TATTATGTTTACATATGATTTAGATATCATT
Found at i:1135438 original size:20 final size:19
Alignment explanation
Indices: 1135390--1135438 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
1135380 CGGCCAAGAG
* *
1135390 CATGTATCTTCATTAAAAT
1 CATGTATTTTCATAAAAAT
1135409 CATG--TTTTCATCAAAAAT
1 CATGTATTTTCAT-AAAAAT
1135427 CATGTATTTTCA
1 CATGTATTTTCA
1135439 AAGGGGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 9 0.36
19 4 0.16
20 6 0.24
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (19 bp):
CATGTATTTTCATAAAAAT
Found at i:1136177 original size:14 final size:14
Alignment explanation
Indices: 1136149--1136210 Score: 72
Period size: 14 Copynumber: 4.3 Consensus size: 14
1136139 TTGGAGTACA
1136149 AAAAGAA-AGAAAAG
1 AAAAGAAGA-AAAAG
* *
1136163 ACAATAAGAAAAAG
1 AAAAGAAGAAAAAG
1136177 AAAAGAAGAAAAAG
1 AAAAGAAGAAAAAG
1136191 AAAAGAAGAAGAAAAG
1 AAAAGAAG-A-AAAAG
1136207 AAAA
1 AAAA
1136211 AGAAATTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 30 0.73
15 2 0.05
16 9 0.22
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (14 bp):
AAAAGAAGAAAAAG
Found at i:1136179 original size:6 final size:6
Alignment explanation
Indices: 1136154--1136215 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
1136144 GTACAAAAAG
*
1136154 AAAG-A AAAGACA ATAAGAA AAAGAAA AGAAGAA AAAG-A AAAGAA GAAG-A
1 AAAGAA AAAGA-A A-AAGAA AAAG-AA A-AAGAA AAAGAA AAAGAA AAAGAA
1136203 AAAGAA AAAGAA A
1 AAAGAA AAAGAA A
1136216 TTCAAAAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
5 13 0.27
6 18 0.38
7 10 0.21
8 7 0.15
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:1136183 original size:28 final size:26
Alignment explanation
Indices: 1136149--1136209 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
1136139 TTGGAGTACA
1136149 AAAAGAAAGAAAAGACAATAAGAAAAAG
1 AAAAGAAAGAAAA-ACAA-AAGAAAAAG
* *
1136177 AAAAG-AAGAAAAAGAAAAGAAGAAG
1 AAAAGAAAGAAAAACAAAAGAAAAAG
1136202 AAAAGAAA
1 AAAAGAAA
1136210 AAGAAATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 13 0.43
26 5 0.17
27 7 0.23
28 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.02
Consensus pattern (26 bp):
AAAAGAAAGAAAAACAAAAGAAAAAG
Found at i:1136196 original size:11 final size:11
Alignment explanation
Indices: 1136154--1136215 Score: 67
Period size: 11 Copynumber: 5.6 Consensus size: 11
1136144 GTACAAAAAG
1136154 AAAGAAAAGACA
1 AAAGAAAAGA-A
1136166 ATAAGAAAA-AGA
1 A-AAGAAAAGA-A
1136178 AAAG--AAGAA
1 AAAGAAAAGAA
1136187 AAAGAAAAGAA
1 AAAGAAAAGAA
*
1136198 GAAGAAAAGAA
1 AAAGAAAAGAA
1136209 AAAGAAA
1 AAAGAAA
1136216 TTCAAAAAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
9 7 0.16
10 1 0.02
11 24 0.56
12 4 0.09
13 7 0.16
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:1136201 original size:17 final size:17
Alignment explanation
Indices: 1136148--1136210 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 17
1136138 ATTGGAGTAC
1136148 AAAAAG-AAAGAA-AAG
1 AAAAAGAAAAGAAGAAG
1136163 ACAATAAGAAAAAGAAAAGAAG
1 A-AA-AAG-AAAAG--AAGAAG
1136185 AAAAAGAAAAGAAGAAG
1 AAAAAGAAAAGAAGAAG
1136202 -AAAAGAAAA
1 AAAAAGAAAA
1136211 AGAAATTCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
15 1 0.02
16 11 0.27
17 9 0.22
19 9 0.22
20 3 0.07
21 4 0.10
22 4 0.10
ACGTcount: A:0.78, C:0.02, G:0.19, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAGAAGAAG
Found at i:1139394 original size:19 final size:20
Alignment explanation
Indices: 1139370--1139420 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
1139360 CGGCCAAGAG
* *
1139370 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
1139389 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
*
1139409 CAGGTATTTTCA
1 CATGTATTTTCA
1139421 AAGGGGTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:1156172 original size:35 final size:37
Alignment explanation
Indices: 1156103--1156182 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
1156093 ATATTATTTC
*
1156103 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
* *
1156140 CATCACCATAGTCCATC-ACCA-TATCACTCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
1156175 CATCACCA
1 CATCACCA
1156183 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 21 0.52
36 3 0.08
37 16 0.40
ACGTcount: A:0.31, C:0.38, G:0.03, T:0.29
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCCTATAT
Found at i:1158963 original size:24 final size:24
Alignment explanation
Indices: 1158931--1158984 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
1158921 TGTAAGGATT
*
1158931 CATTCAAAGGCTTTTTAATTCATC
1 CATTCAAAGGCTTTTAAATTCATC
1158955 CATTCAAAGGCTTTTAAATTCATC
1 CATTCAAAGGCTTTTAAATTCATC
1158979 CATTCA
1 CATTCA
1158985 TGCATATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.39
Consensus pattern (24 bp):
CATTCAAAGGCTTTTAAATTCATC
Found at i:1162823 original size:14 final size:14
Alignment explanation
Indices: 1162787--1162823 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
1162777 CAACAAAAGC
1162787 AACAAAAAG-AGAA
1 AACAAAAAGAAGAA
*
1162800 AA-AGAAAGAAGAA
1 AACAAAAAGAAGAA
1162813 AACAAAAAGAA
1 AACAAAAAGAA
1162824 AAGAAAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
12 5 0.25
13 8 0.40
14 7 0.35
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (14 bp):
AACAAAAAGAAGAA
Found at i:1162895 original size:28 final size:29
Alignment explanation
Indices: 1162862--1162916 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
1162852 AGTACAAAAT
1162862 AAAGAAAAAAAGAAGAAAATT-CAAAGAA
1 AAAGAAAAAAAGAAGAAAATTGCAAAGAA
** *
1162890 AAAGAAAAAGTGAAGAAAGTTGCAAAG
1 AAAGAAAAAAAGAAGAAAATTGCAAAG
1162917 TACACTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.67, C:0.04, G:0.20, T:0.09
Consensus pattern (29 bp):
AAAGAAAAAAAGAAGAAAATTGCAAAGAA
Found at i:1163066 original size:16 final size:16
Alignment explanation
Indices: 1163032--1163080 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
1163022 GTAAGTTATC
* * *
1163032 TTCACTTTCTTACTAT
1 TTCATTTTCTTATTCT
1163048 TTCATTTTCTTATTCT
1 TTCATTTTCTTATTCT
1163064 TTCATCTATTCTTATTC
1 TTCAT-T-TTCTTATTC
1163081 CATTACCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCATTTTCTTATTCT
Found at i:1167468 original size:19 final size:19
Alignment explanation
Indices: 1167426--1167465 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1167416 TATCCCATTC
*
1167426 TTATTTCATTTCATTTTTA
1 TTATTTCATTTCATTCTTA
*
1167445 TTATTTCTTTTCATTACTTA
1 TTATTTCATTTCATT-CTTA
1167465 T
1 T
1167466 ATTATTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTCATTTCATTCTTA
Found at i:1172036 original size:19 final size:19
Alignment explanation
Indices: 1171994--1172033 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1171984 TATCCCATCC
*
1171994 TTATTTCATTTCATTTTTA
1 TTATTTCATTTCATTCTTA
*
1172013 TTATTTCTTTTCATTACTTA
1 TTATTTCATTTCATT-CTTA
1172033 T
1 T
1172034 ATTATTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTCATTTCATTCTTA
Found at i:1179288 original size:30 final size:31
Alignment explanation
Indices: 1179235--1179294 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
1179225 CTTAGATTTA
***
1179235 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACATATCACTTAGATATCATT
*
1179265 TATTATGTTTTCATATCACTTAGATATCAT
1 TATTATGTTTACATATCACTTAGATATCAT
1179295 GGAAGCATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.53
Consensus pattern (31 bp):
TATTATGTTTACATATCACTTAGATATCATT
Found at i:1187297 original size:27 final size:29
Alignment explanation
Indices: 1187267--1187326 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 29
1187257 ATTTTCTTTG
* *
1187267 CTTTTC-TTCTTTTTGAATGC-TGAATTT
1 CTTTTCTTTCTTTTGGAATGCTTCAATTT
*
1187294 C-TTTCTTTCTTTTGGAGTGCTTCAATTT
1 CTTTTCTTTCTTTTGGAATGCTTCAATTT
1187322 CTTTT
1 CTTTT
1187327 TTGATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.15
27 13 0.48
28 7 0.26
29 3 0.11
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.60
Consensus pattern (29 bp):
CTTTTCTTTCTTTTGGAATGCTTCAATTT
Found at i:1190769 original size:20 final size:19
Alignment explanation
Indices: 1190729--1190770 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
1190719 TCTTTATTTC
*
1190729 ATTTCATTCTTATTCTTTT
1 ATTTCATTCTTATTCTATT
1190748 ATTTCATTACTTATAT-TATT
1 ATTTCATT-CTTAT-TCTATT
1190768 ATT
1 ATT
1190771 CCCTTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 11 0.55
21 1 0.05
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTCATTCTTATTCTATT
Found at i:1191137 original size:13 final size:12
Alignment explanation
Indices: 1191115--1191213 Score: 66
Period size: 13 Copynumber: 8.3 Consensus size: 12
1191105 GATATAGACG
1191115 TGAA-ATGGTGA
1 TGAATATGGTGA
1191126 TAGAATATGGTGA
1 T-GAATATGGTGA
*
1191139 TG-ATATAGGCG-
1 TGAATAT-GGTGA
*
1191150 TGCA-ATGGTGA
1 TGAATATGGTGA
*
1191161 TAGAAGATGGTGA
1 T-GAATATGGTGA
1191174 TG-ATATAGGTG-
1 TGAATAT-GGTGA
*
1191185 TGAAAATGGTGA
1 TGAATATGGTGA
*
1191197 TTGAAGATGGTGA
1 -TGAATATGGTGA
1191210 TGAA
1 TGAA
1191214 CATATAGAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 21
0.72 0.06 0.21
Matches are distributed among these distances:
10 3 0.04
11 19 0.27
12 22 0.31
13 27 0.38
ACGTcount: A:0.34, C:0.02, G:0.35, T:0.28
Consensus pattern (12 bp):
TGAATATGGTGA
Found at i:1191143 original size:35 final size:35
Alignment explanation
Indices: 1191097--1191212 Score: 178
Period size: 35 Copynumber: 3.3 Consensus size: 35
1191087 TGGTAAGGGA
* *
1191097 ATGGTGATGATATAGACGTGAAATGGTGATAGAAT
1 ATGGTGATGATATAGGCGTGAAATGGTGATAGAAG
*
1191132 ATGGTGATGATATAGGCGTGCAATGGTGATAGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATAGAAG
* *
1191167 ATGGTGATGATATAGGTGTGAAAATGGTGATTGAAG
1 ATGGTGATGATATAGGCGTG-AAATGGTGATAGAAG
1191203 ATGGTGATGA
1 ATGGTGATGA
1191213 ACATATAGAA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
35 51 0.69
36 23 0.31
ACGTcount: A:0.34, C:0.03, G:0.35, T:0.28
Consensus pattern (35 bp):
ATGGTGATGATATAGGCGTGAAATGGTGATAGAAG
Found at i:1191601 original size:19 final size:20
Alignment explanation
Indices: 1191556--1191604 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
1191546 AACCCCTTTC
**
1191556 AAAATACATGATTTTTGATG
1 AAAATACATGATTTTAAATG
1191576 AAAATACATGA-TTTAAATG
1 AAAATACATGATTTTAAATG
*
1191595 AAGATACATG
1 AAAATACATG
1191605 CTCTTGGTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAATACATGATTTTAAATG
Found at i:1198839 original size:19 final size:20
Alignment explanation
Indices: 1198792--1198842 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
1198782 GAAACCCTTT
**
1198792 TGAAAATACATGATTTTTTA
1 TGAAAATACATGATTTTAAA
1198812 TGAAAATACATGA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
1198831 TGAAGATACATG
1 TGAAAATACATG
1198843 CTCTTGGCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:1201859 original size:18 final size:18
Alignment explanation
Indices: 1201836--1201873 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1201826 GCTTCACTTT
1201836 TTCTTTGTT-TTTTCATTC
1 TTCTTT-TTCTTTTCATTC
*
1201854 TTCTTTTTCTTTTCTTTC
1 TTCTTTTTCTTTTCATTC
1201872 TT
1 TT
1201874 TTGCACTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (18 bp):
TTCTTTTTCTTTTCATTC
Found at i:1201915 original size:11 final size:11
Alignment explanation
Indices: 1201899--1201932 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
1201889 GATGTAGGAG
1201899 TCTTTTTCTTT
1 TCTTTTTCTTT
1201910 TCTTTTTCTTT
1 TCTTTTTCTTT
*
1201921 TTTTTCTTCTTT
1 TCTTT-TTCTTT
1201933 CTTGTTGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:1201933 original size:16 final size:16
Alignment explanation
Indices: 1201902--1201935 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1201892 GTAGGAGTCT
1201902 TTTTCTTTTCTTTTTC
1 TTTTCTTTTCTTTTTC
1201918 TTTT-TTTTCTTCTTTC
1 TTTTCTTTTCTT-TTTC
1201934 TT
1 TT
1201936 GTTGCTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTCTTTTCTTTTTC
Found at i:1201943 original size:23 final size:20
Alignment explanation
Indices: 1201901--1201945 Score: 54
Period size: 23 Copynumber: 2.1 Consensus size: 20
1201891 TGTAGGAGTC
*
1201901 TTTTTCTTTTCTTTTTCTTT
1 TTTTTCTTTTCTTTTGCTTT
1201921 TTTTTCTTCTTTCTTGTTGCTTT
1 TTTTTC-T-TTTCTT-TTGCTTT
1201944 TT
1 TT
1201946 GTTGTAGCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 1 0.05
22 6 0.29
23 8 0.38
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTGCTTT
Found at i:1202764 original size:19 final size:20
Alignment explanation
Indices: 1202722--1202772 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
1202712 GAAACCCCTT
*
1202722 TGAAAATACATGATTTTTAA
1 TGAAAATACATGATTTTAAA
*
1202742 TGAAAATACATTA-TTTAAA
1 TGAAAATACATGATTTTAAA
*
1202761 TGAAGATACATG
1 TGAAAATACATG
1202773 CTCTTGGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTAAA
Found at i:1205127 original size:22 final size:22
Alignment explanation
Indices: 1205102--1205151 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
1205092 GAAAAAAATC
*
1205102 AGAAAAG-AAGCACTCAAAAAGA
1 AGAAAAGAAAACACTC-AAAAGA
**
1205124 AGAATTGAAAACACTCAAAAGA
1 AGAAAAGAAAACACTCAAAAGA
1205146 AGAAAA
1 AGAAAA
1205152 AAAGAAAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.64, C:0.12, G:0.16, T:0.08
Consensus pattern (22 bp):
AGAAAAGAAAACACTCAAAAGA
Found at i:1209311 original size:17 final size:17
Alignment explanation
Indices: 1209285--1209317 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1209275 TGTAGGAGTC
1209285 TTTTTCTTTTCTTTTTA
1 TTTTTCTTTTCTTTTTA
*
1209302 TTTTTTTTTTCTTTTT
1 TTTTTCTTTTCTTTTT
1209318 TCTTGTTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTA
Found at i:1209317 original size:11 final size:11
Alignment explanation
Indices: 1209285--1209318 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
1209275 TGTAGGAGTC
*
1209285 TTTTTCTTTTC
1 TTTTTCTTTTT
*
1209296 TTTTTATTTTT
1 TTTTTCTTTTT
1209307 TTTTTCTTTTT
1 TTTTTCTTTTT
1209318 T
1 T
1209319 CTTGTTGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:1211871 original size:229 final size:229
Alignment explanation
Indices: 1211464--1211923 Score: 827
Period size: 229 Copynumber: 2.0 Consensus size: 229
1211454 CTCCAACGAT
1211464 TAATAGTAAGTTGATCCCACCATATCAAAGCATAATCAACAAACTCCATGGCTGCCAATCTTACT
1 TAATAGTAAGTTGATCCCACCATATCAAAGCATAATCAACAAACTCCATGGCTGCCAATCTTACT
1211529 TTCTTGAGTTCAGAATAGTTTATGGCAACTGAAAAACATGTTCCACCTTGCTTTCCATTCAAGAT
66 TTCTTGAGTTCAGAATAGTTTATGGCAACTGAAAAACATGTTCCACCTTGCTTTCCATTCAAGAT
*
1211594 ATGCTTCCGGATCAATTTTTCCATTAAATTGAGGATTCTTGATTTTATGTTGCTCATGTTATCAT
131 ATGCTTCCGGATCAATTTTTCCATTAAATTGAGGAATCTTGATTTTATGTTGCTCATGTTATCAT
1211659 CAACATTGGCACGCCTAGGTCCTTGTATCAATGC
196 CAACATTGGCACGCCTAGGTCCTTGTATCAATGC
1211693 TAATAGTAAGTTGATCCCACCATATCAAAGCATAATCAACAAACTCCATGGCTGCCAATCTTACT
1 TAATAGTAAGTTGATCCCACCATATCAAAGCATAATCAACAAACTCCATGGCTGCCAATCTTACT
1211758 TTCTTGAGTTCAGAATAG-TTATGGCAACTG-AAAACATGTTCCACCTTGCTTTCCCATTCAAGA
66 TTCTTGAGTTCAGAATAGTTTATGGCAACTGAAAAACATGTTCCACCTTGCTTT-CCATTCAAGA
* * *
1211821 TATGCTTCCGTATCAGTTTTTCC-TTGAAATTGAGGAATCTTGATTTTTATGTTGCTTATGTTAT
130 TATGCTTCCGGATCAATTTTTCCATT-AAATTGAGGAATCTTGA-TTTTATGTTGCTCATGTTAT
*
1211885 CATCAACATTGGCACGCCTAGGTCCTTGTATCAGTGC
193 CATCAACATTGGCACGCCTAGGTCCTTGTATCAATGC
1211922 TA
1 TA
1211924 GTTCTTTTTC
Statistics
Matches: 223, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
227 24 0.11
228 59 0.26
229 140 0.63
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (229 bp):
TAATAGTAAGTTGATCCCACCATATCAAAGCATAATCAACAAACTCCATGGCTGCCAATCTTACT
TTCTTGAGTTCAGAATAGTTTATGGCAACTGAAAAACATGTTCCACCTTGCTTTCCATTCAAGAT
ATGCTTCCGGATCAATTTTTCCATTAAATTGAGGAATCTTGATTTTATGTTGCTCATGTTATCAT
CAACATTGGCACGCCTAGGTCCTTGTATCAATGC
Found at i:1212680 original size:17 final size:16
Alignment explanation
Indices: 1212653--1212702 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
1212643 TTTTTTTGAA
1212653 TTCTTTT-ATTTTTTC
1 TTCTTTTGATTTTTTC
*
1212668 TTCTTTCTGATTTTCTC
1 TTCTTT-TGATTTTTTC
1212685 TTCTTTTG-TCTTTTTC
1 TTCTTTTGAT-TTTTTC
1212701 TT
1 TT
1212703 TATTTTTGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 7 0.23
16 10 0.33
17 13 0.43
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.74
Consensus pattern (16 bp):
TTCTTTTGATTTTTTC
Found at i:1213059 original size:22 final size:21
Alignment explanation
Indices: 1213033--1213076 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
1213023 GGCTGCGGAA
*
1213033 TTGATGGTCTTGATGGATGAAG
1 TTGATGATCTTGAT-GATGAAG
*
1213055 TTGATGATGTTGATGATGAAG
1 TTGATGATCTTGATGATGAAG
1213076 T
1 T
1213077 GGAGATGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.25, C:0.02, G:0.34, T:0.39
Consensus pattern (21 bp):
TTGATGATCTTGATGATGAAG
Found at i:1216258 original size:34 final size:34
Alignment explanation
Indices: 1216216--1216282 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
1216206 GATTAAATTC
*
1216216 ATGAATGAATGAGTTTGGACTCTTAATGTTCTCA
1 ATGAATGAATGAGCTTGGACTCTTAATGTTCTCA
1216250 ATGAATGAATGAGCTTGGACTCTTAATGTTCTC
1 ATGAATGAATGAGCTTGGACTCTTAATGTTCTC
1216283 TATGGTTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (34 bp):
ATGAATGAATGAGCTTGGACTCTTAATGTTCTCA
Found at i:1220472 original size:15 final size:16
Alignment explanation
Indices: 1220447--1220476 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1220437 GTAGGAGTCT
1220447 TTTTCTTTTCTTTTTA
1 TTTTCTTTTCTTTTTA
1220463 TTTT-TTTTCTTTTT
1 TTTTCTTTTCTTTTT
1220477 TCTTGTTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTCTTTTCTTTTTA
Found at i:1224303 original size:40 final size:40
Alignment explanation
Indices: 1224248--1224329 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
1224238 TGCAGGTTTA
*
1224248 TAATACATTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1224288 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1224328 TA
1 TA
1224330 GCACTACGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:1224481 original size:44 final size:47
Alignment explanation
Indices: 1224433--1224542 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
1224423 GTAACCATGC
* *
1224433 AAATAAGCTTATGAGCTTACG-GA-TT-AATGGCAAGTATATTGGAA
1 AAATAAGCTTACGAGCTTACGTAATTTAAATGGCAAGTATATTGGAA
* * * *
1224477 AAATAAGCTTACGAGCTTATGTAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTACGTAATTTAAATGGCAAGTATATTGGAA
1224524 AAATAAGCTTACGAGCTTA
1 AAATAAGCTTACGAGCTTA
1224543 TGGGATAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 19 0.33
45 1 0.02
46 2 0.04
47 35 0.61
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (47 bp):
AAATAAGCTTACGAGCTTACGTAATTTAAATGGCAAGTATATTGGAA
Found at i:1231745 original size:41 final size:43
Alignment explanation
Indices: 1231662--1231745 Score: 100
Period size: 46 Copynumber: 1.9 Consensus size: 43
1231652 CTCCAGCTAA
* *
1231662 GTGAATGCATGAATATCATATAACATTGTACATCAATTATAAAGAT
1 GTGAATGCATGAATATCATATAACATGGTA-AT--ATCATAAAGAT
*
1231708 GTGAATGCATGAATATCATATAATATGGT-AT-TCATAAA
1 GTGAATGCATGAATATCATATAACATGGTAATATCATAAA
1231746 TGATAAATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
41 6 0.17
44 2 0.06
46 27 0.77
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (43 bp):
GTGAATGCATGAATATCATATAACATGGTAATATCATAAAGAT
Found at i:1240896 original size:23 final size:23
Alignment explanation
Indices: 1240870--1240916 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
1240860 ACTAACATGT
*
1240870 GAATGTATGCTTATAATAGAATA
1 GAATGCATGCTTATAATAGAATA
* *
1240893 GAATGCATGCTTATGATATAATA
1 GAATGCATGCTTATAATAGAATA
1240916 G
1 G
1240917 TATAAGATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.34
Consensus pattern (23 bp):
GAATGCATGCTTATAATAGAATA
Found at i:1253456 original size:16 final size:16
Alignment explanation
Indices: 1253435--1253467 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1253425 TTATGCCACC
1253435 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
1253451 TATGTTAGAATGCAAA
1 TATGTTAGAATGCAAA
1253467 T
1 T
1253468 GAGCTAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (16 bp):
TATGTTAGAATGCAAA
Found at i:1262370 original size:19 final size:21
Alignment explanation
Indices: 1262345--1262389 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
1262335 AAGTAAAGAT
1262345 GTGAAAA-CATAT-GTTATGCA
1 GTGAAAATCATATAG-TATGCA
1262365 -TGAAAATCATATAGTATGCA
1 GTGAAAATCATATAGTATGCA
1262385 GTGAA
1 GTGAA
1262390 TGATAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (21 bp):
GTGAAAATCATATAGTATGCA
Found at i:1262681 original size:15 final size:15
Alignment explanation
Indices: 1262663--1262692 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1262653 TGAAGGTCAT
1262663 AAAAAGAA-GTTTTG
1 AAAAAGAACGTTTTG
1262677 AAAAAGAACGTTTTG
1 AAAAAGAACGTTTTG
1262692 A
1 A
1262693 GGAGACAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.50, C:0.03, G:0.20, T:0.27
Consensus pattern (15 bp):
AAAAAGAACGTTTTG
Found at i:1273541 original size:24 final size:21
Alignment explanation
Indices: 1273507--1273549 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
1273497 ATCCACAAGA
*
1273507 ATGTCCTTTGACATTTCAAAGG
1 ATGTCCTTTGA-AATTCAAAGG
1273529 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
1273550 AGAATGAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:1278182 original size:23 final size:23
Alignment explanation
Indices: 1278144--1278195 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
1278134 AAATCCAGCA
1278144 AAGAAATCGAAGAACTC-AAAAG
1 AAGAAATCGAAGAACTCAAAAAG
*
1278166 AAGAAATTGAAAGAACTCAAAAAG
1 AAGAAATCG-AAGAACTCAAAAAG
1278190 AAGAAA
1 AAGAAA
1278196 AAGAAGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 8 0.30
23 8 0.30
24 11 0.41
ACGTcount: A:0.63, C:0.10, G:0.17, T:0.10
Consensus pattern (23 bp):
AAGAAATCGAAGAACTCAAAAAG
Found at i:1278202 original size:23 final size:22
Alignment explanation
Indices: 1278152--1278203 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
1278142 CAAAGAAATC
**
1278152 GAAGAACTCAAAAGAAGAAATT
1 GAAGAACTCAAAAGAAGAAAAA
1278174 GAAAGAACTCAAAAAGAAGAAAAA
1 G-AAGAACTC-AAAAGAAGAAAAA
1278198 GAAGAA
1 GAAGAA
1278204 AGAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 13 0.50
24 12 0.46
ACGTcount: A:0.65, C:0.08, G:0.19, T:0.08
Consensus pattern (22 bp):
GAAGAACTCAAAAGAAGAAAAA
Found at i:1278218 original size:14 final size:14
Alignment explanation
Indices: 1278185--1278224 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
1278175 AAAGAACTCA
1278185 AAAAG-AAGAAAA-
1 AAAAGAAAGAAAAG
*
1278197 AGAAGAAAGAAAAG
1 AAAAGAAAGAAAAG
1278211 AAAAGAAAGAAAAG
1 AAAAGAAAGAAAAG
1278225 TTGAAGCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 4 0.17
13 7 0.29
14 13 0.54
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAAAG
Found at i:1280148 original size:6 final size:6
Alignment explanation
Indices: 1280125--1280177 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
1280115 GTGTTGTAAC
* * *
1280125 AAAAGC AAAA-A AAGAGA AAAAGA AAGAAGA AAAACA AAAAG- AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA-AAGA AAAAGA AAAAGA AAAAGA
1280172 AAAAGA
1 AAAAGA
1280178 CTCCTACATC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 8 0.21
6 25 0.64
7 6 0.15
ACGTcount: A:0.79, C:0.04, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:1284973 original size:16 final size:16
Alignment explanation
Indices: 1284952--1284984 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1284942 GGCCAAGAGC
1284952 ATTTATCTTCATTAAA
1 ATTTATCTTCATTAAA
*
1284968 ATTTATTTTCATTAAA
1 ATTTATCTTCATTAAA
1284984 A
1 A
1284985 ATCATGTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTATCTTCATTAAA
Found at i:1296411 original size:23 final size:24
Alignment explanation
Indices: 1296355--1296413 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
1296345 CTTTTCTTTC
* *
1296355 TTTCTTTTTCTTCTTTTTGAGTGC
1 TTTCATTTTCTTCTTTTTGAGTGA
*
1296379 TTTCAATTTCTTC-TTTTGAGTGA
1 TTTCATTTTCTTCTTTTTGAGTGA
*
1296402 TTTTATTTTCTT
1 TTTCATTTTCTT
1296414 TTCTTATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 19 0.63
24 11 0.37
ACGTcount: A:0.10, C:0.14, G:0.10, T:0.66
Consensus pattern (24 bp):
TTTCATTTTCTTCTTTTTGAGTGA
Found at i:1299600 original size:27 final size:27
Alignment explanation
Indices: 1299551--1299607 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
1299541 GAAAATCATA
*
1299551 AAAGAAATTGAAGCACTCCAAAAGAAAG
1 AAAGAAATTGAAGCACTCAAAAAG-AAG
* *
1299579 AAAGAAATT-CAGCATTCAAAAAGAAG
1 AAAGAAATTGAAGCACTCAAAAAGAAG
1299605 AAA
1 AAA
1299608 AACAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.23
27 11 0.42
28 9 0.35
ACGTcount: A:0.60, C:0.12, G:0.16, T:0.12
Consensus pattern (27 bp):
AAAGAAATTGAAGCACTCAAAAAGAAG
Found at i:1322008 original size:19 final size:20
Alignment explanation
Indices: 1321971--1322010 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
1321961 GGATAATAAT
1321971 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
1321991 ATAAG-AAT-AAAATGAAATA
1 ATAAGTAATGAAAAT-AAATA
1322010 A
1 A
1322011 ATAAAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.23
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:1322462 original size:19 final size:20
Alignment explanation
Indices: 1322421--1322471 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
1322411 GAAACCCCTT
*
1322421 TGAAAATACATGATTTTTTA
1 TGAAAATACATGATTTTTAA
1322441 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
1322460 TGAAGATACATG
1 TGAAAATACATG
1322472 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:1325300 original size:30 final size:31
Alignment explanation
Indices: 1325261--1325320 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
1325251 ACATGCTGCC
**
1325261 ATGATATCTAAATGATATGAAAACATAATAA
1 ATGATATCTAAAACATATGAAAACATAATAA
*
1325292 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGAAAACATAATA
1325321 TAAAGCTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.28
Consensus pattern (31 bp):
ATGATATCTAAAACATATGAAAACATAATAA
Found at i:1326742 original size:21 final size:23
Alignment explanation
Indices: 1326711--1326753 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
1326701 TCTTCAGTTG
*
1326711 CATTGTCTTTAA-GTTGTTCTTT
1 CATTGTCTTTAATGTTCTTCTTT
1326733 CATTG-CTTTAATGTTCTTCTT
1 CATTGTCTTTAATGTTCTTCTT
1326754 CAAGGTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.14, C:0.16, G:0.12, T:0.58
Consensus pattern (23 bp):
CATTGTCTTTAATGTTCTTCTTT
Found at i:1326749 original size:19 final size:21
Alignment explanation
Indices: 1326711--1326750 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
1326701 TCTTCAGTTG
1326711 CATTGTCTTTAAGTTGTTCTTT
1 CATTGTCTTTAAG-TGTTCTTT
1326733 CATTG-CTTTAA-TGTTCTT
1 CATTGTCTTTAAGTGTTCTT
1326751 CTTCAAGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.57
Consensus pattern (21 bp):
CATTGTCTTTAAGTGTTCTTT
Found at i:1327305 original size:20 final size:20
Alignment explanation
Indices: 1327280--1327318 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
1327270 CCATGATATC
1327280 TAAATG-ATATGAAAACATAA
1 TAAATGAATAT-AAAACATAA
1327300 TAAATGAATATAAAACATA
1 TAAATGAATATAAAACATA
1327319 TGTAAGCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.26
Consensus pattern (20 bp):
TAAATGAATATAAAACATAA
Found at i:1328816 original size:23 final size:23
Alignment explanation
Indices: 1328790--1328847 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
1328780 AAATAAATCG
1328790 AAGCACTCAAAAGAAGAAATTGA
1 AAGCACTCAAAAGAAGAAATTGA
1328813 AAGCACTCAAAAGAAGAAATTGA
1 AAGCACTCAAAAGAAGAAATTGA
1328836 AAGCACTCAAAA
1 AAGCACTCAAAA
1328848 AGAAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (23 bp):
AAGCACTCAAAAGAAGAAATTGA
Found at i:1332772 original size:22 final size:24
Alignment explanation
Indices: 1332745--1332796 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
1332735 AAATCCAACA
1332745 AAGAAATCG-AAGCACTC-AAAAG
1 AAGAAATCGAAAGCACTCAAAAAG
*
1332767 AAGAAATTGAAAGCACTCAAAAAG
1 AAGAAATCGAAAGCACTCAAAAAG
1332791 AAGAAA
1 AAGAAA
1332797 AAGAAGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 8 0.30
23 8 0.30
24 11 0.41
ACGTcount: A:0.60, C:0.13, G:0.17, T:0.10
Consensus pattern (24 bp):
AAGAAATCGAAAGCACTCAAAAAG
Found at i:1332819 original size:14 final size:13
Alignment explanation
Indices: 1332785--1332824 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
1332775 GAAAGCACTC
1332785 AAAAAG-AAGAAA
1 AAAAAGAAAGAAA
*
1332797 AAGAAGAAAGAAA
1 AAAAAGAAAGAAA
1332810 ATAAAAGAAAGAAA
1 A-AAAAGAAAGAAA
1332824 A
1 A
1332825 GTTGAAGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 12 0.50
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:1336636 original size:19 final size:20
Alignment explanation
Indices: 1336612--1336657 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
1336602 CGTCCAAGAG
**
1336612 CATGTATCTTCAT-TTAAAT
1 CATGTATCTTCATCAAAAAT
*
1336631 CATGTATTTTCATCAAAAAT
1 CATGTATCTTCATCAAAAAT
1336651 CATGTAT
1 CATGTAT
1336658 TTTAAAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (20 bp):
CATGTATCTTCATCAAAAAT
Found at i:1337222 original size:26 final size:26
Alignment explanation
Indices: 1337177--1337231 Score: 60
Period size: 25 Copynumber: 2.1 Consensus size: 26
1337167 CATACTTTGA
*
1337177 TATCATTTCTTTCCATTTCC-TTTCT
1 TATCATTTCTTTCCATTTCCATTTAT
*
1337202 TATCATTTCCTTT-CTTCTTCCATTTAT
1 TATCATTT-CTTTCCAT-TTCCATTTAT
1337229 TAT
1 TAT
1337232 TTATATTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.40
26 8 0.32
27 7 0.28
ACGTcount: A:0.15, C:0.25, G:0.00, T:0.60
Consensus pattern (26 bp):
TATCATTTCTTTCCATTTCCATTTAT
Found at i:1339744 original size:30 final size:31
Alignment explanation
Indices: 1339692--1339751 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
1339682 CTTAGCTTTA
* **
1339692 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACAAATCATTTAGATATCATT
1339722 TATTATGTTTACAAATCATTTAGATATCAT
1 TATTATGTTTACAAATCATTTAGATATCAT
1339752 GGCAGCATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (31 bp):
TATTATGTTTACAAATCATTTAGATATCATT
Found at i:1345628 original size:23 final size:23
Alignment explanation
Indices: 1345584--1345628 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1345574 AATAAAGGAA
*
1345584 TAGTCACTTTGATGTTGCTGAAG
1 TAGTCACTTTGATGTTGATGAAG
*
1345607 TAGTCATTTTGAT-TTCGATGAA
1 TAGTCACTTTGATGTT-GATGAA
1345629 CATCTTTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.42
Consensus pattern (23 bp):
TAGTCACTTTGATGTTGATGAAG
Found at i:1348072 original size:101 final size:100
Alignment explanation
Indices: 1347871--1348078 Score: 301
Period size: 100 Copynumber: 2.1 Consensus size: 100
1347861 AATATCCTTA
* ** * *
1347871 GCATGATATGTAATATAATAGTATATATTATAAGGCTATTATAAAGTAAATGCATTAAAAGATGT
1 GCATCATATGTAATATAATAACATATATTATAAGACTAGTATAAAGTAAATGCATTAAAAGATGT
*
1347936 TCAAGAGTACTCCCTTTATAGTTGAAAACATGCTT
66 TCAAGAGTACTCCCTTTATAGATGAAAACATGCTT
*
1347971 GCATCATATGTATTATAATAACATATATTATAAGACTAGTATAAAGTAAATGCGA-TATAAAGAT
1 GCATCATATGTAATATAATAACATATATTATAAGACTAGTATAAAGTAAATGC-ATTA-AAAGAT
* **
1348035 GTTTAAGAGTACTCCCTTTATAGATGAAAATGTGCTT
64 GTTCAAGAGTACTCCCTTTATAGATGAAAACATGCTT
1348072 GCATCAT
1 GCATCAT
1348079 CCCCCTTCTT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
100 49 0.51
101 47 0.49
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (100 bp):
GCATCATATGTAATATAATAACATATATTATAAGACTAGTATAAAGTAAATGCATTAAAAGATGT
TCAAGAGTACTCCCTTTATAGATGAAAACATGCTT
Found at i:1350614 original size:15 final size:15
Alignment explanation
Indices: 1350579--1350607 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1350569 GTGCTTTAAC
1350579 TTCTTT-CTTTTCTT
1 TTCTTTGCTTTTCTT
1350593 TTCTTTGCTTTTCTT
1 TTCTTTGCTTTTCTT
1350608 CTTTTTGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTGCTTTTCTT
Found at i:1350630 original size:27 final size:28
Alignment explanation
Indices: 1350600--1350661 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
1350590 CTTTTCTTTG
* *
1350600 CTTTTCTTCTTTTTGAATG-TTGAATTT
1 CTTTTCTTCTTTTGGAATGCTTCAATTT
*
1350627 C-TTTCTTTCTTTTGGAGTGCTTCAATTT
1 CTTTTC-TTCTTTTGGAATGCTTCAATTT
1350655 CTTTTCT
1 CTTTTCT
1350662 GGTTTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.14
27 12 0.41
28 9 0.31
29 4 0.14
ACGTcount: A:0.11, C:0.16, G:0.11, T:0.61
Consensus pattern (28 bp):
CTTTTCTTCTTTTGGAATGCTTCAATTT
Found at i:1353824 original size:20 final size:20
Alignment explanation
Indices: 1353796--1353849 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
1353786 ATCTTCATTT
*
1353796 AAATAATGTATTTTCAACAA
1 AAATCATGTATTTTCAACAA
* **
1353816 AAATCATGTAATTTCTTCAA
1 AAATCATGTATTTTCAACAA
1353836 AAATCATGTATTTT
1 AAATCATGTATTTT
1353850 AAAAGGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.41
Consensus pattern (20 bp):
AAATCATGTATTTTCAACAA
Found at i:1355431 original size:26 final size:26
Alignment explanation
Indices: 1355398--1355472 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 26
1355388 TATCCCTTCT
1355398 TTATTTCATTTCATTTCTTATCTTTA
1 TTATTTCATTTCATTTCTTATCTTTA
*
1355424 TTATTTCATTT-A-TTCTT-CCTTTA
1 TTATTTCATTTCATTTCTTATCTTTA
* *
1355447 TTA-ATCATCTTCCTTTTCTTATCTTT
1 TTATTTCAT-TT-CATTTCTTATCTTT
1355473 GTTGTAGCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 4 0.10
23 10 0.25
24 5 0.12
25 1 0.03
26 16 0.40
27 4 0.10
ACGTcount: A:0.17, C:0.19, G:0.00, T:0.64
Consensus pattern (26 bp):
TTATTTCATTTCATTTCTTATCTTTA
Found at i:1355693 original size:18 final size:18
Alignment explanation
Indices: 1355670--1355738 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
1355660 TATTGGAGTG
**
1355670 CAAAAAGAAAAGAAAAGA
1 CAAAAAGAAAAGAAAATT
*
1355688 CAAAAAGAAGAAAAAAATT
1 CAAAAAGAA-AAGAAAATT
*
1355707 CAGAAAAGAAAACAAAATT
1 CA-AAAAGAAAAGAAAATT
1355726 CAAAAAGAGAAAG
1 CAAAAAGA-AAAG
1355739 CAAGCCAAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
18 15 0.35
19 21 0.49
20 7 0.16
ACGTcount: A:0.72, C:0.07, G:0.14, T:0.06
Consensus pattern (18 bp):
CAAAAAGAAAAGAAAATT
Found at i:1355715 original size:17 final size:17
Alignment explanation
Indices: 1355695--1355733 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
1355685 AGACAAAAAG
1355695 AAGAAA-AAAATTCAGAA
1 AAGAAACAAAATTCA-AA
1355712 AAGAAAACAAAATTCAAA
1 AAG-AAACAAAATTCAAA
1355730 AAGA
1 AAGA
1355734 GAAAGCAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.20
18 8 0.40
19 8 0.40
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (17 bp):
AAGAAACAAAATTCAAA
Found at i:1363088 original size:13 final size:13
Alignment explanation
Indices: 1363066--1363095 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1363056 ACTAAACACC
1363066 TTTC-ACATACCT
1 TTTCAACATACCT
1363078 TTTCAACATACCT
1 TTTCAACATACCT
1363091 TTTCA
1 TTTCA
1363096 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:1374622 original size:17 final size:18
Alignment explanation
Indices: 1374600--1374633 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1374590 AGATACTACA
1374600 TCATCACCATC-TCCATT
1 TCATCACCATCATCCATT
*
1374617 TCATCAGCATCATCCAT
1 TCATCACCATCATCCAT
1374634 CAAGACCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.38, G:0.03, T:0.32
Consensus pattern (18 bp):
TCATCACCATCATCCATT
Found at i:1376400 original size:22 final size:23
Alignment explanation
Indices: 1376373--1376416 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1376363 AAATTCAGCA
1376373 AAGAAATCG-AAGCACTCAAAAG
1 AAGAAATCGAAAGCACTCAAAAG
*
1376395 AAGAAATTGAAAGCACTCAAAA
1 AAGAAATCGAAAGCACTCAAAA
1376417 AGAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (23 bp):
AAGAAATCGAAAGCACTCAAAAG
Found at i:1382070 original size:22 final size:23
Alignment explanation
Indices: 1382044--1382086 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1382034 AATCCAACAA
*
1382044 AGAAA-TCGAAGCACTCAAAAGG
1 AGAAATTCAAAGCACTCAAAAGG
*
1382066 AGAAATTTAAAGCACTCAAAA
1 AGAAATTCAAAGCACTCAAAA
1382087 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.14
Consensus pattern (23 bp):
AGAAATTCAAAGCACTCAAAAGG
Found at i:1383650 original size:35 final size:35
Alignment explanation
Indices: 1383538--1383649 Score: 170
Period size: 35 Copynumber: 3.2 Consensus size: 35
1383528 TAAGATACAA
*
1383538 CCTATAACATCACCATCTTCCATCACCATTTTCACG
1 CCTATAACATCACCATCTTCCATTACCA-TTTCACG
*
1383574 CCTATAACATCACCATCTTCCATTACCATTGCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
* * *
1383609 CCTATATCATTACCATATTCCATTACCATTTCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
1383644 CCTATA
1 CCTATA
1383650 TAACCACCAA
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 43 0.61
36 27 0.39
ACGTcount: A:0.29, C:0.36, G:0.04, T:0.32
Consensus pattern (35 bp):
CCTATAACATCACCATCTTCCATTACCATTTCACG
Found at i:1384112 original size:11 final size:11
Alignment explanation
Indices: 1384096--1384122 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
1384086 ATTGGAGTGC
1384096 AAAAGAAAAAG
1 AAAAGAAAAAG
1384107 AAAAGAAAAAG
1 AAAAGAAAAAG
1384118 AAAAG
1 AAAAG
1384123 TGAAGAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:1384289 original size:16 final size:16
Alignment explanation
Indices: 1384255--1384303 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
1384245 GTAAGTTATC
* * *
1384255 TTCACTTTCTTACTAT
1 TTCATTTTCTTATTCT
1384271 TTCATTTTCTTATTCT
1 TTCATTTTCTTATTCT
1384287 TTCATCTATTCTTATTC
1 TTCAT-T-TTCTTATTC
1384304 CATTACCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCATTTTCTTATTCT
Found at i:1387706 original size:35 final size:35
Alignment explanation
Indices: 1387620--1387732 Score: 145
Period size: 35 Copynumber: 3.2 Consensus size: 35
1387610 TAAGATATAA
* * *
1387620 CCTATAACATCACCATCTTCCATCACCATTTTCATG
1 CCTATATCATCACCATCTTCCATTACCA-TTTCACG
* * *
1387656 CCTATAGCATCACCATCTTCCATTACCAATGCACG
1 CCTATATCATCACCATCTTCCATTACCATTTCACG
* *
1387691 CCTATATCATTACCATCTTCCATTACCATTTCACA
1 CCTATATCATCACCATCTTCCATTACCATTTCACG
1387726 CCTATAT
1 CCTATAT
1387733 AACCACCAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 41 0.61
36 26 0.39
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.33
Consensus pattern (35 bp):
CCTATATCATCACCATCTTCCATTACCATTTCACG
Found at i:1389685 original size:36 final size:35
Alignment explanation
Indices: 1389638--1389732 Score: 127
Period size: 36 Copynumber: 2.7 Consensus size: 35
1389628 TTAAGATACA
* *
1389638 ACCTATAACATCACCATCTTCCATCACCGTTTTCAC
1 ACCTATAACATCACCATCTTCCATCACC-ATTGCAC
*
1389674 ACCTATAACATCACCATCTTCCATTACCATTGCAC
1 ACCTATAACATCACCATCTTCCATCACCATTGCAC
* * *
1389709 GCCTATATCATTACCATCTTCCAT
1 ACCTATAACATCACCATCTTCCAT
1389733 TGCCATTTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 26 0.49
36 27 0.51
ACGTcount: A:0.28, C:0.37, G:0.03, T:0.32
Consensus pattern (35 bp):
ACCTATAACATCACCATCTTCCATCACCATTGCAC
Found at i:1389751 original size:35 final size:35
Alignment explanation
Indices: 1389639--1389750 Score: 143
Period size: 35 Copynumber: 3.2 Consensus size: 35
1389629 TAAGATACAA
* * *
1389639 CCTATAACATCACCATCTTCCATCACCGTTTTCACA
1 CCTATAACATCACCATCTTCCATTACC-ATTTCACG
*
1389675 CCTATAACATCACCATCTTCCATTACCATTGCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
* * * *
1389710 CCTATATCATTACCATCTTCCATTGCCATTTCATG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
1389745 CCTATA
1 CCTATA
1389751 TAACCACCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
35 41 0.61
36 26 0.39
ACGTcount: A:0.27, C:0.36, G:0.04, T:0.33
Consensus pattern (35 bp):
CCTATAACATCACCATCTTCCATTACCATTTCACG
Found at i:1389913 original size:10 final size:11
Alignment explanation
Indices: 1389900--1389940 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
1389890 TTTGATAACT
1389900 TTTC-TTTCTA
1 TTTCATTTCTA
*
1389910 TTTCAATTCT-
1 TTTCATTTCTA
1389920 TTTCATTTCTA
1 TTTCATTTCTA
*
1389931 TTTCTTTTCT
1 TTTCATTTCT
1389941 TAATTATCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.12, C:0.20, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTCATTTCTA
Found at i:1391766 original size:35 final size:35
Alignment explanation
Indices: 1391654--1391765 Score: 161
Period size: 35 Copynumber: 3.2 Consensus size: 35
1391644 TAAGATACAA
*
1391654 CCTATAACATCACCATCTTCCATCACCATTTTCACG
1 CCTATAACATCACCATCTTCCATTACCA-TTTCACG
* *
1391690 CCTATAACATCACCATATTCCATTACCATTGCACG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
* * *
1391725 CCTATATCATTACCATCTTCCATTACCATTTCATG
1 CCTATAACATCACCATCTTCCATTACCATTTCACG
1391760 CCTATA
1 CCTATA
1391766 TAACCACCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
35 42 0.62
36 26 0.38
ACGTcount: A:0.29, C:0.35, G:0.04, T:0.33
Consensus pattern (35 bp):
CCTATAACATCACCATCTTCCATTACCATTTCACG
Found at i:1395283 original size:24 final size:21
Alignment explanation
Indices: 1395249--1395291 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
1395239 TCCACAAGAC
*
1395249 ATGTCCTTTGACATTTCAAAGG
1 ATGTCCTTTGA-AATTCAAAGG
1395271 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
1395292 AGAATGTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:1398881 original size:28 final size:27
Alignment explanation
Indices: 1398842--1398908 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
1398832 AGAGAATCAG
*
1398842 AAAAAAA-AAATTGAAGCACTCCAAAAA
1 AAAAAAAGAAATTCAAGCACT-CAAAAA
* * *
1398869 AAATAAAGAAATTCCAGCACTTAAAAA
1 AAAAAAAGAAATTCAAGCACTCAAAAA
1398896 AAAAGCAAAGAAA
1 AAAA--AAAGAAA
1398909 AGAAAAGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
27 14 0.44
28 11 0.34
29 7 0.22
ACGTcount: A:0.66, C:0.13, G:0.09, T:0.12
Consensus pattern (27 bp):
AAAAAAAGAAATTCAAGCACTCAAAAA
Found at i:1400808 original size:10 final size:10
Alignment explanation
Indices: 1400793--1400819 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1400783 CAAGAATGGC
1400793 CAATGTCGGT
1 CAATGTCGGT
1400803 CAATGTCGGT
1 CAATGTCGGT
1400813 CAATGTC
1 CAATGTC
1400820 AGCCAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (10 bp):
CAATGTCGGT
Found at i:1405961 original size:13 final size:13
Alignment explanation
Indices: 1405945--1405984 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
1405935 CTTTTGTTTC
1405945 TTTCTTTTTTGTT
1 TTTCTTTTTTGTT
* *
1405958 TTTCTTCTTTCTT
1 TTTCTTTTTTGTT
1405971 TTTCTCTTTTTGTT
1 TTTCT-TTTTTGTT
1405985 GCTTTTGTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (13 bp):
TTTCTTTTTTGTT
Found at i:1406430 original size:13 final size:13
Alignment explanation
Indices: 1406412--1406436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1406402 ATAGGCGTGA
1406412 AAAATGGTGATGG
1 AAAATGGTGATGG
1406425 AAAATGGTGATG
1 AAAATGGTGATG
1406437 AACATATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (13 bp):
AAAATGGTGATGG
Found at i:1407332 original size:19 final size:20
Alignment explanation
Indices: 1407295--1407335 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
1407285 GGATAATAAT
1407295 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
1407315 ATAAG-AAT-AAAATGAAATA
1 ATAAGTAATGAAAAT-AAATA
1407334 AT
1 AT
1407336 GAAAGGATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:1407787 original size:19 final size:20
Alignment explanation
Indices: 1407746--1407788 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1407736 GAAACCCCTT
* *
1407746 TGAAAATACATGATTTTTGA
1 TGAAAATACATGAATTTTAA
1407766 TGAAAATACAT-AATTTTAA
1 TGAAAATACATGAATTTTAA
1407785 TGAA
1 TGAA
1407789 GATATATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGAATTTTAA
Found at i:1411442 original size:19 final size:20
Alignment explanation
Indices: 1411405--1411444 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
1411395 GGATAATAAT
1411405 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
1411425 ATAAG-AAT-AAAATGAAATA
1 ATAAGTAATGAAAAT-AAATA
1411444 A
1 A
1411445 ATAAATGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.23
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:1411896 original size:19 final size:20
Alignment explanation
Indices: 1411856--1411905 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
1411846 AAACCCCTTA
*
1411856 GAAAATACATGATTTTTGAT
1 GAAAATACATGATTTTTAAT
1411876 GAAAATACATGA-TTTTAAT
1 GAAAATACATGATTTTTAAT
*
1411895 GAAGATACATG
1 GAAAATACATG
1411906 CTCTTGGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (20 bp):
GAAAATACATGATTTTTAAT
Found at i:1413754 original size:759 final size:758
Alignment explanation
Indices: 1412319--1414568 Score: 3270
Period size: 759 Copynumber: 3.0 Consensus size: 758
1412309 GGTTAATCTA
* * ** * * *
1412319 AGCTGGTCATAGGTG-AATTACATGAA-GATGAGTCTTTGGCCAGCTCCTTGTGAAAAGGCACCT
1 AGCTGGCCATAGATGCAA-TACAT-AATGATGAGTCTTAAGACAGCTCCTTGTGAAAGGGCACTT
* * * * *
1412382 CTTGGAATGGCAACTCTTCGCGAAAAGGTACGAATCCACAAAAATTGACTTAGACCATATTTGAA
64 CTCGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCAC-AAAATTGACCTAGACCATATTTGTA
* * ** * *
1412447 GTACTCTATGTGGTGGTGATGATGGTGCAACTCTCCAGCTGAAATGAGGTCTCTAGCTAGCTTAA
128 GTGCTCTGTGTGGTGAAGATGATGGTGCAACTCTCCAGCTGAAAAGAGGTCTCTAGCTAGCTCAA
* * * * * * ** * *
1412512 AGGTCCAGCTCAAGTGAGCTATGAGCTCGGGGGTCAGCTGATAAGTTT-TCACAATTTGTTCTTC
193 AAGTCCAACTCAAGTGAGCTATGAGCTCGGAGGTCAGCTGACAACTTTGTCTCAAAATGTCCTTG
* * ** * * * * * *
1412576 ATGATCTCCC-GAGTCATCCTA-TGTAAGTTTTCC-TAGCTC-CTTA-TCC-TTAGTTAAGC-TC
258 A-GCTATCCCGGAGTTGTCCTACT-CAAG-TTTCCTTAGCTCAATGATTCCAAT-GCT-AGCTTT
* * * * * *
1412634 AAATATAGATCCCA--AGTGTTGGCCGAATAT--TCCTAT--ATGCATAA-CATAAAGAAATAAA
318 AAAT-CAGCTCCCATCA-T-TTGGCCGAACATGCACCTATAAAAG-A-AAGCAT--A-ATATAAA
* * * *
1412692 CTAAGTATAT-AAACAATATAATGCATATAATATAATGATGTGCATATTATAAAGATGTGAACTA
375 CTAAGTATATGAAATATTATAAAGCA-AT-A-A-GA--ATGTGCATATTATAAAGATGTGAACTA
*
1412756 TAGGTTATAATAATAACTCATGCATCATATGATTATGAATGAATATTAATA-T-TAACTATAGAT
434 TAGGTTATAATAATAACTCATGCATCATATGATAATGAATGAATATTAATATTATAACTATAGAT
*
1412819 TATATACATGAATATCAATCAATGATACAAACCATAGGATATAATGAATGAATACACATACTATG
499 TATATGCATGAATATCAATCAATGATACAAACCATAGGATATAATGAATGAATACACATACTATG
* *
1412884 ATAAATCAAGTATAGTCTAATATGCAAATGTATGCTCATAATAATATATATAGTGCATGAATAAG
564 ATAATTCAAGTATAGTCTAATATGCAAATGTATGCTCATAATAATATATATAGTGCATAAATAAG
* *
1412949 TAAATATAATATAAAGTCTGGTAGAACTCCCTTATATTGAGTTTGATGGTTCTTCAATGATGTGA
629 TAAATATAATATAAAGTATAGTAGAACTCCCTTATATTGAGTTTGATGGTTCTTCAATGATGTGA
1413014 GTATGTCATGCAGAAAGTTGGTGCTAAACAGGATCACATAATCCCATGTGTTTGAGATGAAGATG
694 GTATGTCATGCAGAAAGTTGGTGCTAAACAGGATCACATAATCCCATGTGTTTGAGATGAAGATG
*
1413079 AGCTGGCCATAGATGCAATACATAATGATGAGTCTTAAGACAGTTCCTTGTGAAAGGGCACTTCT
1 AGCTGGCCATAGATGCAATACATAATGATGAGTCTTAAGACAGCTCCTTGTGAAAGGGCACTTCT
1413144 CGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCACAAAATTCGACCTAGACCATATTTGTAGT
66 CGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCACAAAATT-GACCTAGACCATATTTGTAGT
* *
1413209 GCTCTGTGTGGTGAAGATGATGGTACAACTCTCCAGCTGAAAAGAGGTCTCTAACTAGCTCAAAA
130 GCTCTGTGTGGTGAAGATGATGGTGCAACTCTCCAGCTGAAAAGAGGTCTCTAGCTAGCTCAAAA
*
1413274 GTCCAACTCAAGTGAGCTATGAGCTCGGAGATCAGCTGACAACTTTGTCTCAAAATGTCCTTGAG
195 GTCCAACTCAAGTGAGCTATGAGCTCGGAGGTCAGCTGACAACTTTGTCTCAAAATGTCCTTGAG
*
1413339 CTGTCCCGGAGTTGTCCTACTCAAGTTTCCTTAGCTCAATGATTCCAATGCTAGCTTTAAATCAG
260 CTATCCCGGAGTTGTCCTACTCAAGTTTCCTTAGCTCAATGATTCCAATGCTAGCTTTAAATCAG
1413404 CTCCCATCATTTGGCCGAACATGCACCTATAAAAGAAAGCATAATATAAACTAAGTATATGAAAT
325 CTCCCATCATTTGGCCGAACATGCACCTATAAAAGAAAGCATAATATAAACTAAGTATATGAAAT
* *
1413469 ATTATAAAGCAATAAGAATGTGCGTATTATAAAGTTGTGAACTATAGGTTATAATAATAACTCAT
390 ATTATAAAGCAATAAGAATGTGCATATTATAAAGATGTGAACTATAGGTTATAATAATAACTCAT
1413534 GCATCATATGATAATGAATGAATATTAATATTATAACTATAGATTATATGCATGAATATCAATCA
455 GCATCATATGATAATGAATGAATATTAATATTATAACTATAGATTATATGCATGAATATCAATCA
* *
1413599 ATGATACAAACCATAGGATATAATGAATGAATAAACATACTATGATAATTTAAGTATAGTCTAAT
520 ATGATACAAACCATAGGATATAATGAATGAATACACATACTATGATAATTCAAGTATAGTCTAAT
1413664 ATGCAAATGTATGCTCATAATAATATATATAGTGCATAAATAAGTAAATATAATATAAAGTATAG
585 ATGCAAATGTATGCTCATAATAATATATATAGTGCATAAATAAGTAAATATAATATAAAGTATAG
*
1413729 TAGAACTCCCTTATATTGAGTTTGATGGTTCTTCAATGACGTGAGTATGTCATGCAGAAAGTTGG
650 TAGAACTCCCTTATATTGAGTTTGATGGTTCTTCAATGATGTGAGTATGTCATGCAGAAAGTTGG
*
1413794 TGCTAAACAGGATCACATCATCCCATGTGTTTGAGATGAAGATG
715 TGCTAAACAGGATCACATAATCCCATGTGTTTGAGATGAAGATG
* * *
1413838 AGCTGGCCATAGAAGCAATACATGATGATGAGTCTTAAGACAGCTCATTGTGAAAGGGCACTTCT
1 AGCTGGCCATAGATGCAATACATAATGATGAGTCTTAAGACAGCTCCTTGTGAAAGGGCACTTCT
1413903 CGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCACAAAATTTGACCTAGACCATATTTGTAGT
66 CGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCACAAAA-TTGACCTAGACCATATTTGTAGT
1413968 GCTCTGTGTGGTGAAGATGATGGTGCAACTCTCCAGCTGAAAAGAGGTCTCTAGCTAGCTCAAAA
130 GCTCTGTGTGGTGAAGATGATGGTGCAACTCTCCAGCTGAAAAGAGGTCTCTAGCTAGCTCAAAA
*
1414033 GTCCAACTCAAGTGAGCTATGAGCTCGTAGGTCAGCTGACAACTTTGTCTCAAAATGTCCTTGAG
195 GTCCAACTCAAGTGAGCTATGAGCTCGGAGGTCAGCTGACAACTTTGTCTCAAAATGTCCTTGAG
1414098 CTATCCCGGAGTTGTCCTACTCAAGTTTCCTTAGCTCAATGATTCCAATGCTAGCTTTAAATCAG
260 CTATCCCGGAGTTGTCCTACTCAAGTTTCCTTAGCTCAATGATTCCAATGCTAGCTTTAAATCAG
* * *
1414163 CTCCCATCATTTGGCCGAACATGCACCTACAAAAGAAAGCATAATAAAAACTAAGTATATGAATT
325 CTCCCATCATTTGGCCGAACATGCACCTATAAAAGAAAGCATAATATAAACTAAGTATATGAAAT
1414228 ATTATAAAGCAATAAGAATGTGCATATTATAAAGATGTGAACTATAGGTTATAATAATAACTCAT
390 ATTATAAAGCAATAAGAATGTGCATATTATAAAGATGTGAACTATAGGTTATAATAATAACTCAT
* * * * * *
1414293 ACATCATTTGATAATGAATTAATATTATTATTACAACTATAGATTTTATGCATGAATATCAATCA
455 GCATCATATGATAATGAATGAATATTAATATTATAACTATAGATTATATGCATGAATATCAATCA
* * * * ** *
1414358 ATGATGCAAACCATTGGACATAATGAATGAATGCACATGTTATGATAATTCAAGCATAGTCTAAT
520 ATGATACAAACCATAGGATATAATGAATGAATACACATACTATGATAATTCAAGTATAGTCTAAT
* *
1414423 ATGAAAATGTATGCTCATAAT-A-ATATATAGTGCATAAATGAGTAAATATAATATAAAGTA-AG
585 ATGCAAATGTATGCTCATAATAATATATATAGTGCATAAATAAGTAAATATAATATAAAGTATA-
* * *
1414485 GTAGAAATCCCTTATACTGAGATTGATGGATT-TTCAATGATGTGAGTATGTCATGCAGAAAGTT
649 GTAGAACTCCCTTATATTGAGTTTGATGG-TTCTTCAATGATGTGAGTATGTCATGCAGAAAGTT
* *
1414549 GGTGCTAGACATGATCACAT
713 GGTGCTAAACAGGATCACAT
1414569 CATGTTCCAC
Statistics
Matches: 1365, Mismatches: 101, Indels: 51
0.90 0.07 0.03
Matches are distributed among these distances:
756 1 0.00
757 187 0.14
758 4 0.00
759 844 0.62
760 215 0.16
761 33 0.02
762 42 0.03
763 24 0.02
764 9 0.01
765 4 0.00
766 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (758 bp):
AGCTGGCCATAGATGCAATACATAATGATGAGTCTTAAGACAGCTCCTTGTGAAAGGGCACTTCT
CGGATTGGCAACTCTTCGCGAAAAGGTACGAATTCACAAAATTGACCTAGACCATATTTGTAGTG
CTCTGTGTGGTGAAGATGATGGTGCAACTCTCCAGCTGAAAAGAGGTCTCTAGCTAGCTCAAAAG
TCCAACTCAAGTGAGCTATGAGCTCGGAGGTCAGCTGACAACTTTGTCTCAAAATGTCCTTGAGC
TATCCCGGAGTTGTCCTACTCAAGTTTCCTTAGCTCAATGATTCCAATGCTAGCTTTAAATCAGC
TCCCATCATTTGGCCGAACATGCACCTATAAAAGAAAGCATAATATAAACTAAGTATATGAAATA
TTATAAAGCAATAAGAATGTGCATATTATAAAGATGTGAACTATAGGTTATAATAATAACTCATG
CATCATATGATAATGAATGAATATTAATATTATAACTATAGATTATATGCATGAATATCAATCAA
TGATACAAACCATAGGATATAATGAATGAATACACATACTATGATAATTCAAGTATAGTCTAATA
TGCAAATGTATGCTCATAATAATATATATAGTGCATAAATAAGTAAATATAATATAAAGTATAGT
AGAACTCCCTTATATTGAGTTTGATGGTTCTTCAATGATGTGAGTATGTCATGCAGAAAGTTGGT
GCTAAACAGGATCACATAATCCCATGTGTTTGAGATGAAGATG
Found at i:1415445 original size:12 final size:12
Alignment explanation
Indices: 1415416--1415453 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
1415406 CTTTGGCTTG
1415416 CTTTCTTTTTAATT
1 CTTTCTTTTT--TT
1415430 -TTTCTTTTTTT
1 CTTTCTTTTTTT
1415441 CTTTCTTTTTTT
1 CTTTCTTTTTTT
1415453 C
1 C
1415454 AGATTTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 2 0.09
12 12 0.52
13 9 0.39
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (12 bp):
CTTTCTTTTTTT
Found at i:1417716 original size:10 final size:10
Alignment explanation
Indices: 1417701--1417727 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1417691 CTCAACTCCT
1417701 CAGCTACTTC
1 CAGCTACTTC
1417711 CAGCTACTTC
1 CAGCTACTTC
1417721 CAGCTAC
1 CAGCTAC
1417728 CTCTAGTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.41, G:0.11, T:0.26
Consensus pattern (10 bp):
CAGCTACTTC
Found at i:1417740 original size:21 final size:20
Alignment explanation
Indices: 1417701--1417740 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1417691 CTCAACTCCT
*
1417701 CAGCTACTTCCAGCTACTTC
1 CAGCTACCTCCAGCTACTTC
*
1417721 CAGCTACCTCTAGTCTACTT
1 CAGCTACCTCCAG-CTACTT
1417741 TTCAGTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.20, C:0.38, G:0.10, T:0.33
Consensus pattern (20 bp):
CAGCTACCTCCAGCTACTTC
Found at i:1423031 original size:5 final size:5
Alignment explanation
Indices: 1423021--1423046 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1423011 CTTCAACTTC
1423021 TTTCT TTTCT TTTCT TTTCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT T
1423047 CTTTTTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:1425611 original size:5 final size:5
Alignment explanation
Indices: 1425601--1425626 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1425591 CTTCAACTTC
1425601 TTTCT TTTCT TTTCT TTTCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT T
1425627 CTTTTTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:1434010 original size:19 final size:20
Alignment explanation
Indices: 1433986--1434031 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
1433976 CGGCCAAGAG
*
1433986 CATGTATCTTCAT-TAAAAT
1 CATGTATCTTCATAAAAAAT
*
1434005 CATGTATTTTCATAAAAAAT
1 CATGTATCTTCATAAAAAAT
1434025 CATGTAT
1 CATGTAT
1434032 TTTTCAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (20 bp):
CATGTATCTTCATAAAAAAT
Found at i:1434025 original size:20 final size:19
Alignment explanation
Indices: 1433986--1434034 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
1433976 CGGCCAAGAG
* *
1433986 CATGTATCTTCATTAAAAT
1 CATGTATTTTCATAAAAAT
1434005 CATGTATTTTCATAAAAAAT
1 CATGTATTTTCAT-AAAAAT
1434025 CATGTATTTT
1 CATGTATTTT
1434035 TCAAAGGAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (19 bp):
CATGTATTTTCATAAAAAT
Found at i:1437005 original size:7 final size:7
Alignment explanation
Indices: 1436993--1437054 Score: 56
Period size: 7 Copynumber: 8.4 Consensus size: 7
1436983 ATTTTTTTCA
1436993 AAAAAAC
1 AAAAAAC
1437000 AAAAAA-
1 AAAAAAC
1437006 AAGGCAAAA-
1 AA---AAAAC
1437015 AAAAAAC
1 AAAAAAC
*
1437022 AAAAAGGC
1 AAAAA-AC
1437030 AAAAAAAC
1 -AAAAAAC
1437038 AAAAAAC
1 AAAAAAC
1437045 AAAAAAC
1 AAAAAAC
1437052 AAA
1 AAA
1437055 GCCAAAAAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
6 6 0.13
7 28 0.60
8 2 0.04
9 11 0.23
ACGTcount: A:0.82, C:0.11, G:0.06, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:1437015 original size:19 final size:19
Alignment explanation
Indices: 1436991--1437043 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
1436981 CTATTTTTTT
1436991 CAAAAAAACAAAAAAAAGG
1 CAAAAAAACAAAAAAAAGG
1437010 CAAAAAAA-AAACAAAAAGG
1 CAAAAAAACAAA-AAAAAGG
1437029 CAAAAAAACAAAAAA
1 CAAAAAAACAAAAAA
1437044 CAAAAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.09
19 26 0.81
20 3 0.09
ACGTcount: A:0.81, C:0.11, G:0.08, T:0.00
Consensus pattern (19 bp):
CAAAAAAACAAAAAAAAGG
Found at i:1437034 original size:28 final size:29
Alignment explanation
Indices: 1437002--1437070 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
1436992 AAAAAAACAA
* *
1437002 AAAAAAGGCAAAAAA-AAAACAA-AAAGGC
1 AAAAAAGACAAAAAACAAAA-AACAAAGCC
1437030 AAAAAA-ACAAAAAACAAAAAACAAAGCC
1 AAAAAAGACAAAAAACAAAAAACAAAGCC
*
1437058 AAAAAAGCCAAAA
1 AAAAAAGACAAAA
1437071 TTTCAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 9 0.26
28 21 0.60
29 5 0.14
ACGTcount: A:0.77, C:0.14, G:0.09, T:0.00
Consensus pattern (29 bp):
AAAAAAGACAAAAAACAAAAAACAAAGCC
Found at i:1437049 original size:16 final size:17
Alignment explanation
Indices: 1437013--1437050 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
1437003 AAAAAGGCAA
*
1437013 AAAAAAAACAAAAAGGC
1 AAAAAAAACAAAAAGAC
1437030 -AAAAAAACAAAAA-AC
1 AAAAAAAACAAAAAGAC
1437045 AAAAAA
1 AAAAAA
1437051 CAAAGCCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 1 0.05
16 18 0.95
ACGTcount: A:0.84, C:0.11, G:0.05, T:0.00
Consensus pattern (17 bp):
AAAAAAAACAAAAAGAC
Found at i:1441367 original size:15 final size:15
Alignment explanation
Indices: 1441340--1441378 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
1441330 CTTTATTATC
1441340 TTATTTCATCTTTCAT
1 TTATTT-ATCTTTCAT
**
1441356 TTATTTATCTTTTGT
1 TTATTTATCTTTCAT
1441371 TTATTTAT
1 TTATTTAT
1441379 TCTAATCGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (15 bp):
TTATTTATCTTTCAT
Found at i:1443035 original size:30 final size:31
Alignment explanation
Indices: 1442999--1443058 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
1442989 CTTAGCTTTA
**
1442999 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACATATCATTTAGATATCATT
*
1443029 TATTATGTTTGCATATCATTTAGATATCAT
1 TATTATGTTTACATATCATTTAGATATCAT
1443059 GGAAATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.53
Consensus pattern (31 bp):
TATTATGTTTACATATCATTTAGATATCATT
Found at i:1443969 original size:19 final size:20
Alignment explanation
Indices: 1443945--1443995 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1443935 CGGCCAAGAG
* *
1443945 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
1443964 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
1443984 CATGTATTTTCA
1 CATGTATTTTCA
1443996 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:1454707 original size:19 final size:19
Alignment explanation
Indices: 1454683--1454723 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
1454673 CGGCCAAGAG
*
1454683 CATGTATCTTCATTAAAAT
1 CATGTATCTTCATAAAAAT
*
1454702 CATGTATTTTCATAAAAAT
1 CATGTATCTTCATAAAAAT
1454721 CAT
1 CAT
1454724 ATATTTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (19 bp):
CATGTATCTTCATAAAAAT
Found at i:1454728 original size:19 final size:19
Alignment explanation
Indices: 1454691--1454732 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
1454681 AGCATGTATC
* *
1454691 TTCATTAAAATCATGTATT
1 TTCATAAAAATCATATATT
1454710 TTCATAAAAATCATATATT
1 TTCATAAAAATCATATATT
1454729 TTCA
1 TTCA
1454733 AAGGGGTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (19 bp):
TTCATAAAAATCATATATT
Found at i:1458580 original size:36 final size:36
Alignment explanation
Indices: 1458529--1458633 Score: 149
Period size: 36 Copynumber: 2.9 Consensus size: 36
1458519 GATACAATCT
*
1458529 GTCCATCACCATTATCATGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* *
1458565 GTCTATCACCATTATCACGCCTATATCATCACAATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* * *
1458601 TTCCATCACTA-TATCACGCCTATATTATCACCA
1 GTCCATCACCATTATCACGCCTATATCATCACCA
1458634 ACTTATAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
35 20 0.33
36 41 0.67
ACGTcount: A:0.31, C:0.32, G:0.05, T:0.31
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Found at i:1459099 original size:14 final size:15
Alignment explanation
Indices: 1459065--1459111 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
1459055 AATTTGGAGT
1459065 GCAAAAGAAAGAAAA
1 GCAAAAGAAAGAAAA
*
1459080 GAAAAAG-AAGAAAA
1 GCAAAAGAAAGAAAA
*
1459094 TCAAAAGCAAAAGAAAA
1 GCAAAAG--AAAGAAAA
1459111 G
1 G
1459112 TGAAGCAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
17 7 0.28
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02
Consensus pattern (15 bp):
GCAAAAGAAAGAAAA
Found at i:1463773 original size:432 final size:432
Alignment explanation
Indices: 1462970--1463831 Score: 1573
Period size: 432 Copynumber: 2.0 Consensus size: 432
1462960 GCCACAAGGA
1462970 CCAATAACTCGATCAAGAGCCAAACTTTTCAAGGAAACTCTTACTACCAAATGCATTAAAACCTT
1 CCAATAACTCGATCAAGAGCCAAACTTTTCAAGGAAACTCTTACTACCAAATGCATTAAAACCTT
1463035 TGAATCATTTAGAAATGCATCCCCAAACAATAGATTATATAATATGTTTTATGTTGACATATAAT
66 TGAATCATTTAGAAATGCATCCCCAAACAATAGATTATATAATATGTTTTATGTTGACATATAAT
1463100 ATAATCTATGAACCACATATTTATATCTTATATTACATAGCTTATAAATGTTTTCTTTTGTAGGT
131 ATAATCTATGAACCACATATTTATATCTTATATTACATAGCTTATAAATGTTTTCTTTTGTAGGT
1463165 ACATATTCGACCACATCATGGGAGCTGACTTAAAGCTAGAATTGGAGTCAATAAGCTAAGAAATC
196 ACATATTCGACCACATCATGGGAGCTGACTTAAAGCTAGAATTGGAGTCAATAAGCTAAGAAATC
*
1463230 TTACATAGGATGACTCGGGATATCATGAAGAACAAATGGTGAAAAGTTGCTAGCTGACCCCCGAG
261 TTACATAGGATGACTCGGAATATCATGAAGAACAAATGGTGAAAAGTTGCTAGCTGACCCCCGAG
* *
1463295 CTCATAACTCACTTGAGCTGGACTTTTGAGCTAGCTAGAGACTTCATTTCAGCTGGGGAGTTGCA
326 CTCATAACTCACTTGAGCTGGACTTTTAAGCTAGCTAGAGACTTCATTTCAGCTGGAGAGTTGCA
*
1463360 CCATCATCTTCACCACACAGAGAACTACAAATATGGTCTAAC
391 CCATCATCTTCACCACACAGAGAACAACAAATATGGTCTAAC
* *
1463402 CCAATAACTCGATCAAGAGCCAAACTTTTCAGGGAAGCTCTTACTACCAAATGCATTAAAACCTT
1 CCAATAACTCGATCAAGAGCCAAACTTTTCAAGGAAACTCTTACTACCAAATGCATTAAAACCTT
*
1463467 TGAATCATTTAGAAATGCATCCCCAAACAATAGATTATTTAATATGTTTTATGTTGACATATAAT
66 TGAATCATTTAGAAATGCATCCCCAAACAATAGATTATATAATATGTTTTATGTTGACATATAAT
*
1463532 ATAATCTATGAACCACATATTTATATCTTATATTACTTAGCTTATAAATGTTTTCTTTTGTAGGT
131 ATAATCTATGAACCACATATTTATATCTTATATTACATAGCTTATAAATGTTTTCTTTTGTAGGT
* * *
1463597 ACATGTTCGGCCACATCATGGGAGCTGACTTAAAGCTAGAATTGGAGTCAATAAGCTAGGAAATC
196 ACATATTCGACCACATCATGGGAGCTGACTTAAAGCTAGAATTGGAGTCAATAAGCTAAGAAATC
*
1463662 TTACATAGGATGACTCGGAAGT-TCATGAAGAACAAATGGTGAAAAGTTGCTAGCTGACCCCTGA
261 TTACATAGGATGACTCGGAA-TATCATGAAGAACAAATGGTGAAAAGTTGCTAGCTGACCCCCGA
* *
1463726 GCTCATAGCTCACTTGAGCTGGACTTTTAAGCTAGCTAGAGACTTCATTTCAGTTGGAGAGTTGC
325 GCTCATAACTCACTTGAGCTGGACTTTTAAGCTAGCTAGAGACTTCATTTCAGCTGGAGAGTTGC
*
1463791 ACCATCATCTTCACCACACAGAGCACAACAAATATGGTCTA
390 ACCATCATCTTCACCACACAGAGAACAACAAATATGGTCTA
1463832 GGTCAATTTT
Statistics
Matches: 414, Mismatches: 15, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
432 413 1.00
433 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (432 bp):
CCAATAACTCGATCAAGAGCCAAACTTTTCAAGGAAACTCTTACTACCAAATGCATTAAAACCTT
TGAATCATTTAGAAATGCATCCCCAAACAATAGATTATATAATATGTTTTATGTTGACATATAAT
ATAATCTATGAACCACATATTTATATCTTATATTACATAGCTTATAAATGTTTTCTTTTGTAGGT
ACATATTCGACCACATCATGGGAGCTGACTTAAAGCTAGAATTGGAGTCAATAAGCTAAGAAATC
TTACATAGGATGACTCGGAATATCATGAAGAACAAATGGTGAAAAGTTGCTAGCTGACCCCCGAG
CTCATAACTCACTTGAGCTGGACTTTTAAGCTAGCTAGAGACTTCATTTCAGCTGGAGAGTTGCA
CCATCATCTTCACCACACAGAGAACAACAAATATGGTCTAAC
Found at i:1464551 original size:13 final size:12
Alignment explanation
Indices: 1464532--1464617 Score: 58
Period size: 13 Copynumber: 7.2 Consensus size: 12
1464522 ATATAGGCGT
1464532 GATATGGTGATG
1 GATATGGTGATG
1464544 GAATATGGTGAT-
1 G-ATATGGTGATG
*
1464556 GATATAGGCG-T-
1 GATAT-GGTGATG
1464567 GATAATGGTGATG
1 GAT-ATGGTGATG
1464580 GACTATGGTGAT-
1 GA-TATGGTGATG
*
1464592 GATATAGGCG-T-
1 GATAT-GGTGATG
1464603 GATAATGGTGATG
1 GAT-ATGGTGATG
1464616 GA
1 GA
1464618 CAGATTGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 21 0.35
12 16 0.27
13 22 0.37
14 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.30
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:1464587 original size:36 final size:36
Alignment explanation
Indices: 1464514--1464618 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
1464504 ATTTATAAGT
* *
1464514 TGGTGATAATATAGGCGTGAT-ATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1464549 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1464585 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1464619 AGATTGTATC
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 20 0.30
36 47 0.70
ACGTcount: A:0.29, C:0.05, G:0.36, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
Found at i:1469079 original size:36 final size:36
Alignment explanation
Indices: 1469006--1469110 Score: 176
Period size: 36 Copynumber: 2.9 Consensus size: 36
1468996 ATTTATAAGT
* * *
1469006 TGGTGATAATATAGGCGTGAT-ATGATGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1469041 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1469077 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAC
1469111 AGATTGTATC
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 20 0.30
36 46 0.70
ACGTcount: A:0.30, C:0.05, G:0.35, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
Done.