genome.fa.s8168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008168.1 Hibiscus syriacus cultivar Beakdansim tig00110749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82183

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1450--1498	19	2.6	19	96	3	91	16	10	20	53	1.72
3482--3510	14	2.1	14	93	6	51	20	6	0	72	1.07
4312--4619	157	1.9	159	91	2	505	39	13	13	34	1.83
4904--4943	21	2.0	19	85	9	53	60	2	0	37	1.11
5648--5690	16	2.4	18	77	18	54	39	4	25	30	1.76
5748--5796	23	2.1	23	88	0	71	40	10	16	32	1.82
5819--5875	23	2.5	23	88	0	87	45	7	14	33	1.71
5739--5960	80	2.7	81	86	4	295	43	9	13	32	1.78
5726--5970	84	2.9	84	85	5	311	43	10	13	33	1.77
6337--6795	111	4.2	108	86	4	588	46	11	11	30	1.76
7262--7689	109	4.0	110	88	5	590	45	10	12	32	1.76
8002--8041	21	1.9	21	85	10	55	37	30	2	30	1.71
6234--8479	892	2.5	889	88	5	3357	43	11	10	35	1.75
8395--8435	20	2.0	20	90	0	64	43	19	9	26	1.82
8122--8479	109	3.3	111	85	5	466	45	10	11	32	1.75
10170--10221	27	1.9	27	84	0	68	32	25	13	28	1.93
11819--12332	228	2.3	227	94	0	884	23	15	13	47	1.81
20293--20327	17	2.1	17	100	0	70	42	22	5	28	1.76
32783--32825	3	13.3	3	90	4	50	62	2	0	34	1.08
33885--33925	16	2.6	16	82	17	50	56	0	0	43	0.99
34140--34181	20	2.1	20	90	0	66	33	16	23	26	1.96
34262--35186	105	8.8	105	98	0	1778	22	19	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35379--35404	1	26.0	1	100	0	52	0	0	0	100	0.00
35985--36009	1	25.0	1	100	0	50	0	0	0	100	0.00
47281--47342	33	2.0	31	84	15	83	59	4	1	33	1.28
48411--48451	16	2.6	16	82	17	50	56	0	0	43	0.99
48482--48533	24	2.2	24	96	0	95	30	28	15	25	1.96
49098--49133	2	18.0	2	100	0	72	50	0	0	50	1.00
49918--49983	31	2.1	31	88	0	96	34	12	28	24	1.91
51029--51095	31	2.2	31	86	0	89	28	23	10	37	1.88
51036--51102	31	2.2	31	88	0	107	20	29	13	35	1.91
59033--59379	155	2.2	153	86	3	482	46	6	18	28	1.73
59033--59410	153	2.4	153	85	3	436	47	5	18	28	1.72
59033--59430	155	2.6	150	83	8	402	47	5	18	27	1.72
59493--59528	14	2.5	15	90	9	65	47	27	5	19	1.72
64278--64309	16	2.0	16	93	0	55	65	0	3	31	1.08
65450--65548	38	2.6	39	80	3	112	45	22	8	24	1.79
80234--80283	23	2.1	24	92	3	84	30	26	22	22	1.99

Tables:   1

The End!