genome.fa.s8169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008169.1 Hibiscus syriacus cultivar Beakdansim tig00110751_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58749

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5708--5771	20	3.4	18	79	10	67	18	4	3	73	1.14
6583--6637	22	2.5	21	77	8	56	29	1	1	67	1.11
10411--10451	12	3.4	12	87	12	66	85	0	14	0	0.60
10405--10454	18	2.7	19	84	9	68	84	0	16	0	0.63
10405--10451	24	2.0	24	91	8	78	85	0	14	0	0.61
10405--10456	15	3.6	15	78	17	56	82	0	17	0	0.66
12313--12645	73	4.6	73	89	2	499	30	15	12	40	1.85
13369--13527	65	2.5	66	84	3	189	27	15	25	32	1.95
14191--14234	18	2.5	17	82	7	61	54	27	0	18	1.44
14202--14238	18	2.0	19	94	5	67	59	27	0	13	1.35
21991--22153	65	2.5	65	84	4	206	28	15	25	30	1.96
22102--22151	19	2.8	17	80	14	64	26	16	34	24	1.95
21995--22201	65	3.2	65	80	13	189	28	17	24	30	1.97
22444--22811	73	5.1	73	88	3	555	30	16	13	38	1.87
22454--22811	144	2.5	147	92	2	591	30	16	13	39	1.87
22456--22794	37	9.3	35	64	16	138	30	16	13	38	1.88
22808--23122	120	2.6	121	84	3	402	41	15	17	25	1.89
23665--23714	13	3.9	13	78	2	57	22	2	4	72	1.12
23659--23708	20	2.5	20	83	6	57	22	2	4	72	1.12
24767--24805	2	19.5	2	100	0	78	51	0	0	48	1.00
31002--31029	9	3.1	9	100	0	56	10	57	32	0	1.33
31054--31122	10	7.1	10	71	12	63	18	23	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31054--31124	19	3.7	19	86	1	88	18	25	28	28	1.98
31119--31177	17	3.4	17	80	4	55	18	38	20	22	1.93
31160--31189	7	4.4	7	91	8	53	16	30	30	23	1.96
31160--31189	13	2.2	14	94	5	53	16	30	30	23	1.96
38365--38433	10	7.1	10	76	12	72	18	21	28	30	1.97
38365--38433	19	3.6	19	88	5	86	18	21	28	30	1.97
38444--38484	17	2.4	17	95	0	73	17	41	24	17	1.89
38474--38510	7	5.4	7	93	6	67	16	29	29	24	1.96
38474--38506	13	2.5	13	95	5	57	15	30	30	24	1.95
42655--42701	24	2.0	24	83	8	60	34	12	19	34	1.89
45665--45705	20	2.1	19	90	4	64	36	17	26	19	1.94
56803--56854	17	3.1	16	81	8	59	36	11	5	46	1.64

Tables:   1

The End!