Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000817.1 Hibiscus syriacus cultivar Beakdansim tig00001581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86237

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11159--11199
21
2.0
20
85
4
55
43
2
0
53
1.13
19900--19952
21
2.5
21
87
0
79
20
24
18
35
1.95
19942--20075
20
6.7
20
85
1
187
38
20
20
20
1.93
20062--20128
20
3.3
20
85
0
89
32
25
19
22
1.97
20971--21024
24
2.2
24
90
0
81
22
18
18
40
1.91
23438--23531
20
4.7
20
88
2
127
36
25
19
19
1.95
23438--23531
40
2.3
40
90
3
145
36
25
19
19
1.95
23503--23633
34
3.8
33
86
3
154
44
18
21
16
1.87
23527--23633
34
3.1
34
89
2
162
45
16
22
14
1.84
23661--23694
14
2.4
14
90
0
50
11
20
17
50
1.77
23643--23710
20
3.8
19
77
20
83
11
20
19
48
1.80
23643--23743
33
3.0
33
89
2
139
11
22
20
44
1.84
23849--23885
14
2.6
14
86
0
56
48
21
0
29
1.50
25300--25357
21
2.8
21
82
7
73
20
18
39
20
1.92
25842--25970
20
6.4
20
95
0
186
36
22
20
20
1.95
26015--26101
20
4.3
20
91
0
129
22
19
19
37
1.94
26015--26101
40
2.2
40
93
0
147
22
19
19
37
1.94
26140--26191
20
2.6
20
93
0
95
19
19
23
38
1.93
28062--28151
20
4.6
20
80
1
83
47
23
14
14
1.81
28738--28820
20
4.1
20
78
3
103
22
20
19
37
1.94
28810--28862
21
2.5
21
87
0
79
35
18
24
20
1.95
40634--40688
5
10.6
5
80
20
60
76
5
0
18
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42301--42375
23
3.3
23
83
9
84
78
0
18
2
0.86
42301--42376
11
6.8
11
77
16
61
78
0
18
2
0.86
42333--42376
14
3.1
14
93
6
72
81
0
18
0
0.68
44796--45017
39
5.7
39
91
2
351
32
16
16
33
1.92
44937--45001
22
3.2
22
62
28
52
35
16
16
30
1.92
44796--45017
77
2.9
77
91
2
365
32
16
16
33
1.92
45040--45421
136
2.8
136
89
0
548
34
16
22
26
1.95
50484--50895
215
1.9
215
93
3
704
28
20
17
33
1.95
51807--51857
26
1.9
27
84
4
68
41
7
19
31
1.80
57714--57826
3
37.7
3
94
0
190
62
0
1
35
1.05
58162--58663
129
3.9
129
84
3
607
26
18
29
26
1.98
58188--58652
46
10.7
45
68
13
253
25
18
30
25
1.98
58713--58798
32
2.6
33
81
7
95
19
13
27
38
1.90
60914--61036
52
2.4
52
84
4
160
26
21
16
36
1.94
62564--62668
5
20.8
5
74
23
80
0
18
0
80
0.76
62561--62671
27
4.4
25
76
11
100
0
17
0
81
0.73
62533--62671
62
2.2
61
82
12
167
3
15
0
80
0.84
62533--62668
17
8.7
16
75
14
108
3
16
0
80
0.86
62561--62671
38
3.1
34
80
19
122
0
17
0
81
0.73
62533--62671
12
11.9
12
80
11
105
3
15
0
80
0.84
68781--68866
3
28.7
3
92
0
136
61
0
2
36
1.09
71375--71869
6
84.0
6
94
5
886
33
0
16
49
1.48

Tables:   1

The End!