genome.fa.s8171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008171.1 Hibiscus syriacus cultivar Beakdansim tig00110762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104764

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20876--20941	29	2.3	28	79	7	71	30	10	6	53	1.60
25068--25107	21	2.0	20	85	14	55	75	7	5	12	1.18
27120--27154	2	17.5	2	93	0	61	51	0	2	45	1.16
27338--27492	73	2.1	73	92	2	258	27	13	14	44	1.83
42274--42306	17	1.9	17	88	11	50	24	3	3	69	1.16
45992--46032	22	1.9	21	90	5	64	24	0	2	73	0.96
50274--50334	30	2.0	30	81	12	72	39	4	9	45	1.59
51797--51835	20	2.0	20	90	10	62	41	2	7	48	1.45
51797--51841	21	2.2	20	88	4	63	42	2	6	48	1.41
51802--51866	27	2.4	27	84	7	78	41	3	9	46	1.51
53374--53411	14	2.6	15	87	4	51	63	0	2	34	1.09
54008--54083	33	2.5	32	79	12	88	43	0	0	56	0.99
54004--54093	32	2.8	32	74	12	85	43	0	0	56	0.99
54234--54279	17	2.8	16	83	9	56	32	0	4	63	1.14
55877--55938	21	2.9	22	86	9	85	24	32	17	25	1.97
55874--55946	21	3.5	20	80	10	67	21	31	21	24	1.98
56468--56573	34	3.1	34	83	2	151	52	5	3	37	1.43
56471--56574	33	3.1	33	84	4	138	52	5	3	37	1.43
56996--57628	127	5.0	126	89	1	937	33	18	23	24	1.97
56995--57628	253	2.5	252	90	1	975	34	18	23	23	1.96
71221--71255	13	2.8	13	95	4	63	31	17	37	14	1.89
71249--71282	11	3.1	11	95	0	59	38	23	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71282--71361	22	3.4	22	73	18	79	33	18	38	8	1.82
71310--71475	28	5.6	28	78	13	188	33	19	35	10	1.87
71284--71480	61	3.5	50	73	25	178	33	19	37	10	1.85
71304--71494	61	3.1	61	95	0	337	34	20	34	10	1.87
71508--71616	29	3.8	29	95	2	184	14	31	32	22	1.94
71666--71739	37	2.0	37	97	2	141	16	45	13	24	1.83
71744--71778	18	1.9	18	100	0	70	28	17	25	28	1.97
71868--71913	23	2.0	23	100	0	92	47	4	39	8	1.54
71868--71928	23	2.6	23	86	5	59	50	6	36	6	1.54
71916--71974	21	2.9	21	92	2	93	61	0	37	1	1.07
72108--72196	41	2.2	41	78	8	92	42	1	10	46	1.45
72177--72268	46	2.0	48	87	8	136	42	0	11	45	1.41
74528--74586	26	2.3	24	78	16	64	40	3	8	47	1.51
75395--75469	25	3.2	25	88	7	104	54	13	0	32	1.39
75401--75474	21	3.3	21	83	9	76	54	14	0	31	1.41
76078--76157	29	2.8	29	98	0	151	16	30	33	20	1.94
88024--88123	35	2.8	35	96	3	182	32	8	21	39	1.82
90479--90507	2	14.5	2	100	0	58	51	0	0	48	1.00
90721--90854	24	5.6	24	86	1	162	41	19	11	27	1.87
90718--90854	72	1.9	72	87	3	204	40	19	11	27	1.86
98752--98799	24	2.0	24	95	0	87	31	20	12	35	1.90

Tables:   1

The End!