genome.fa.s8172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008172.1 Hibiscus syriacus cultivar Beakdansim tig00110763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140334

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5394--5428	13	2.8	13	95	4	63	31	17	37	14	1.89
5422--5448	11	2.5	11	100	0	54	37	25	18	18	1.94
5453--5532	22	3.4	22	73	18	79	33	18	38	8	1.82
5481--5646	28	5.6	28	78	13	188	33	19	35	10	1.87
5455--5651	61	3.5	50	73	25	178	33	19	37	10	1.85
5475--5665	61	3.1	61	95	0	337	34	20	34	10	1.87
5679--5787	29	3.8	29	95	2	184	14	31	32	22	1.94
5837--5909	35	2.0	37	94	5	132	16	45	13	24	1.84
5914--5948	18	1.9	18	100	0	70	28	17	25	28	1.97
6038--6083	23	2.0	23	100	0	92	47	4	39	8	1.54
6038--6098	23	2.6	23	86	5	59	50	6	36	6	1.54
6086--6159	21	3.4	21	88	9	96	58	0	39	2	1.13
6088--6126	13	3.1	13	85	3	53	61	0	38	0	0.96
6274--6362	41	2.2	41	78	8	92	42	1	10	46	1.45
6343--6434	46	2.0	48	87	8	136	42	0	11	45	1.41
8690--8748	26	2.3	24	78	16	64	40	3	8	47	1.51
9544--9606	28	2.2	30	91	5	103	57	11	0	31	1.34
9548--9613	28	2.4	28	85	10	98	56	10	0	33	1.34
9583--9631	21	2.3	21	85	3	71	53	16	0	30	1.43
10228--10306	29	2.8	29	96	1	142	16	29	34	20	1.94
22109--22208	35	2.8	35	96	3	182	32	8	21	39	1.82
24550--24578	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24791--24924	24	5.6	24	86	1	162	41	19	11	27	1.87
24788--24924	72	1.9	72	87	3	204	40	19	11	27	1.86
32816--32863	24	2.0	24	95	0	87	31	20	12	35	1.90
47529--47561	15	2.3	15	89	5	50	84	0	15	0	0.61
50050--50103	18	3.0	18	91	0	72	14	38	18	27	1.90
50346--50387	22	1.9	22	85	9	59	33	2	7	57	1.39
51321--51352	13	2.4	14	94	5	57	71	0	0	28	0.86
63137--63181	23	2.0	23	90	0	72	35	11	4	48	1.59
71532--71585	21	2.5	22	82	14	69	53	0	0	46	1.00
71550--71592	21	2.1	21	83	8	54	51	2	0	46	1.13
82151--82196	19	2.3	20	81	7	58	28	28	17	26	1.98
82262--82313	21	2.5	21	81	9	63	40	19	21	19	1.92
82302--82415	20	5.7	20	92	0	165	29	27	19	23	1.98
82569--82598	12	2.5	12	88	0	51	20	40	6	33	1.78
82747--82788	20	2.0	21	90	4	68	40	19	19	21	1.92
82812--82865	14	3.5	14	75	22	54	11	22	20	46	1.82
82794--82864	33	2.2	33	81	0	79	19	21	21	38	1.94
82992--83028	14	2.6	14	86	0	56	48	21	0	29	1.50
84892--84959	20	3.5	19	78	6	73	38	22	25	14	1.92
84948--85038	14	5.9	14	73	20	74	48	23	16	12	1.79
84932--85043	33	3.4	33	96	1	199	47	22	17	12	1.81
84932--85054	65	1.9	66	89	5	196	47	22	17	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85050--85165	19	6.6	19	74	17	83	13	20	21	43	1.86
85072--85129	14	3.9	14	79	16	71	10	15	24	50	1.75
85055--85145	32	2.8	33	91	3	157	12	17	21	48	1.80
85130--85173	20	2.2	20	92	4	72	20	25	18	36	1.95
85660--85704	18	2.5	18	85	0	63	15	15	42	26	1.87
87890--87935	18	2.6	18	85	0	65	28	41	15	15	1.87
88391--88436	20	2.3	20	92	0	74	39	26	19	15	1.91
88399--88443	20	2.2	20	92	0	72	42	22	22	13	1.88
88506--88557	14	3.4	14	72	23	50	7	17	25	50	1.72
88486--88557	33	2.2	33	92	2	119	9	19	22	48	1.77
90366--90414	20	2.5	20	96	0	89	38	28	18	14	1.90
90366--90422	20	2.8	20	91	0	78	38	28	17	15	1.91
90418--90551	33	4.1	33	81	7	157	47	20	20	12	1.82
90418--90551	66	2.0	66	84	8	175	47	20	20	12	1.82
90551--90628	33	2.4	33	84	4	104	15	17	17	48	1.81
90952--91140	94	2.0	94	92	0	315	47	17	12	22	1.81
92647--92735	20	4.8	19	72	18	80	44	19	23	12	1.84
92672--92735	33	1.9	34	90	3	103	42	21	25	10	1.85
92736--92802	19	3.5	19	82	8	73	11	14	23	49	1.77
93328--93541	20	10.6	20	76	8	182	24	21	18	35	1.96
93326--93541	41	5.3	41	74	8	199	25	21	18	34	1.96
93328--93541	61	3.5	60	77	9	220	24	21	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94039--94127	44	2.0	44	100	0	178	37	15	24	22	1.93
97045--97116	20	3.6	20	80	0	99	37	23	18	20	1.94
97041--97133	20	4.7	20	75	7	91	36	24	16	22	1.94
97500--97619	20	5.8	20	83	9	118	20	18	13	48	1.81
97514--97632	20	5.8	21	84	1	118	18	21	14	46	1.84
101525--101967	224	2.0	226	91	3	734	45	7	7	39	1.61
102033--102077	20	2.3	19	82	14	56	53	8	17	20	1.70
104555--104620	33	2.0	33	87	0	96	28	1	45	24	1.62
105839--105902	23	2.8	23	87	0	92	35	6	20	37	1.78
105839--105911	23	3.2	23	82	7	85	34	5	20	39	1.76
112016--112087	35	2.1	35	91	0	117	36	18	9	36	1.83
112379--112437	26	2.2	26	84	3	73	18	5	20	55	1.61
112422--112491	31	2.3	31	85	7	90	27	11	22	38	1.89
112420--112491	32	2.4	30	81	13	85	27	11	22	38	1.88
112481--112566	32	2.6	33	81	5	111	15	10	32	41	1.81
125162--125251	42	2.2	42	91	2	146	18	16	17	46	1.84
125455--125509	21	2.6	21	80	11	58	43	1	0	54	1.10
125473--125515	21	2.0	23	86	9	63	41	2	0	55	1.12
125506--125608	50	2.1	48	80	10	111	49	0	1	47	1.19
125527--125620	28	3.4	28	79	17	99	48	0	2	48	1.13
125971--126039	34	2.0	34	85	0	93	40	14	7	37	1.74
126011--126069	29	2.0	29	90	0	91	32	15	6	45	1.72

Tables:   1

The End!