Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008173.1 Hibiscus syriacus cultivar Beakdansim tig00110764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 490413
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:1474 original size:33 final size:33
Alignment explanation
Indices: 1432--1497 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1422 AAAATAGATG
*
1432 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
1465 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
1498 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:2741 original size:22 final size:23
Alignment explanation
Indices: 2715--2772 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
2705 GGTAAACATG
2715 ATGTAATAGGTAGCCCTTATA-A
1 ATGTAATAGGTAGCCCTTATATA
* **
2737 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCCCTTATATA
2760 ATGTAATAGGTAG
1 ATGTAATAGGTAG
2773 TGGTTATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (23 bp):
ATGTAATAGGTAGCCCTTATATA
Found at i:2779 original size:23 final size:23
Alignment explanation
Indices: 2715--2781 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
2705 GGTAAACATG
**
2715 ATGTAATAGGTAGCCCTTATA-A
1 ATGTAATAGGTAGTGCTTATATA
*
2737 ATGTAATAGGTA-TCGTTTATATA
1 ATGTAATAGGTAGT-GCTTATATA
*
2760 ATGTAATAGGTAGTGGTTATAT
1 ATGTAATAGGTAGTGCTTATAT
2782 TGTAAAGTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 17 0.45
23 20 0.53
24 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (23 bp):
ATGTAATAGGTAGTGCTTATATA
Found at i:8932 original size:35 final size:35
Alignment explanation
Indices: 8861--8932 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
8851 GGATCGTAAC
* *
8861 ACTGACCTTTTAAATACCTTAAGAATGATTGATAT
1 ACTGACCTTTTAAATACCCTAAGAATGATTCATAT
*
8896 ACTGACCTTTTAAATACCCTAAGAATGATTCTTAT
1 ACTGACCTTTTAAATACCCTAAGAATGATTCATAT
8931 AC
1 AC
8933 ATTACTGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (35 bp):
ACTGACCTTTTAAATACCCTAAGAATGATTCATAT
Found at i:9278 original size:26 final size:25
Alignment explanation
Indices: 9225--9280 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
9215 TTGGGTCATT
* * *
9225 TTTTTAAGTTTGATATTCTAGTTGG
1 TTTTTAAGTATGATATTCGAGTCGG
*
9250 TTTTTAAGTATGATATTCGGGTCGAG
1 TTTTTAAGTATGATATTCGAGTCG-G
9276 TTTTT
1 TTTTT
9281 TTAAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.20, C:0.05, G:0.21, T:0.54
Consensus pattern (25 bp):
TTTTTAAGTATGATATTCGAGTCGG
Found at i:9317 original size:30 final size:31
Alignment explanation
Indices: 9264--9334 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 31
9254 TAAGTATGAT
*
9264 ATTCGGGTC-GAGTTTTTTTAAAAATTTCGA
1 ATTCGGGTCGGAGTTTTTTTAAAAAATTCGA
9294 A-TCGGGTCGGA-TTTTTTTAAAAAAATTCGA
1 ATTCGGGTCGGAGTTTTTTT-AAAAAATTCGA
*
9324 ATTCGAGTCGG
1 ATTCGGGTCGG
9335 GTCGGGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 14 0.39
30 14 0.39
31 8 0.22
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (31 bp):
ATTCGGGTCGGAGTTTTTTTAAAAAATTCGA
Found at i:9367 original size:33 final size:33
Alignment explanation
Indices: 9324--9410 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 33
9314 AAAAATTCGA
* *
9324 ATTCGAGTCGGGTCGGGTTTTTTTAAGTTTGAT
1 ATTCGGGTCGGGTCGGGTTTTTTTAAGTGTGAT
**
9357 ATTCGGGTCGGGTCGAATTTTTTTAAGTGTGAT
1 ATTCGGGTCGGGTCGGGTTTTTTTAAGTGTGAT
*
9390 ATTCGGGTCGGATTCGGGTTT
1 ATTCGGGTCGG-GTCGGGTTT
9411 AGGATGAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 40 0.87
34 6 0.13
ACGTcount: A:0.15, C:0.10, G:0.32, T:0.43
Consensus pattern (33 bp):
ATTCGGGTCGGGTCGGGTTTTTTTAAGTGTGAT
Found at i:22061 original size:42 final size:42
Alignment explanation
Indices: 22013--22104 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
22003 TTTTTCCGTT
* *
22013 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATATTTTCC
22055 CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATATTTTCC
1 CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATATTTTCC
*
22097 AGTGTTTG
1 CGTGTTTG
22105 GTTGGAGAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.18, C:0.17, G:0.18, T:0.46
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATATTTTCC
Found at i:22351 original size:21 final size:23
Alignment explanation
Indices: 22318--22361 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
22308 TAATTATTAA
22318 AATATTTAAAAT-ATATT-TATT
1 AATATTTAAAATAATATTATATT
**
22339 AATATTTCTAATAATATTATATT
1 AATATTTAAAATAATATTATATT
22362 TTTAATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.53
22 5 0.26
23 4 0.21
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTAAAATAATATTATATT
Found at i:22362 original size:17 final size:18
Alignment explanation
Indices: 22335--22368 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22325 AAAATATATT
22335 TATTAATATTTCTAATAA
1 TATTAATATTTCTAATAA
*
22353 TATT-ATATTTTTAATA
1 TATTAATATTTCTAATA
22369 TTATAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTAATATTTCTAATAA
Found at i:22405 original size:31 final size:30
Alignment explanation
Indices: 22350--22460 Score: 97
Period size: 31 Copynumber: 3.7 Consensus size: 30
22340 ATATTTCTAA
*
22350 TAAT-ATTATATTTTTAATATTATAATAAAT
1 TAATAATTATA-TTTTAATAATATAATAAAT
* * *
22380 TAATCAATTATATTATAATAATATAAGATAT
1 TAAT-AATTATATTTTAATAATATAATAAAT
*
22411 T-ATAATTTTATTTTAATAATATATAATAAAT
1 TAATAATTATATTTTAAT-A-ATATAATAAAT
22442 T-AT--TTATATATTTAATAAT
1 TAATAATTATAT-TTTAATAAT
22461 GAATAATATT
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.03
29 18 0.27
30 13 0.19
31 28 0.42
32 6 0.09
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (30 bp):
TAATAATTATATTTTAATAATATAATAAAT
Found at i:22427 original size:29 final size:31
Alignment explanation
Indices: 22354--22433 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 31
22344 TTCTAATAAT
* *
22354 ATTATATTTTTAATATTATAATAAATTAATCA
1 ATTATA-TTTTAATAATATAAGAAATTAATCA
* *
22386 ATTATATTATAATAATATAAGATATT-AT-A
1 ATTATATTTTAATAATATAAGAAATTAATCA
*
22415 ATTTTATTTTAATAATATA
1 ATTATATTTTAATAATATA
22434 TAATAAATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 18 0.43
30 2 0.05
31 16 0.38
32 6 0.14
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (31 bp):
ATTATATTTTAATAATATAAGAAATTAATCA
Found at i:22472 original size:28 final size:27
Alignment explanation
Indices: 22427--22491 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 27
22417 TTTATTTTAA
22427 TAATATATAATAAATTATTTATATATT
1 TAATATATAATAAATTATTTATATATT
22454 TAATA-ATGAATAATATTATTTATATATT
1 TAATATAT-AATAA-ATTATTTATATATT
22482 TAATAT-TAAT
1 TAATATATAAT
22492 CTAATAATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.06
27 13 0.37
28 20 0.57
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TAATATATAATAAATTATTTATATATT
Found at i:22515 original size:19 final size:18
Alignment explanation
Indices: 22423--22517 Score: 57
Period size: 19 Copynumber: 5.0 Consensus size: 18
22413 TAATTTTATT
*
22423 TTAATAATA-TATAATAAA
1 TTAATAATATTTTAAT-AA
* *
22441 TTATTTATATATTTAATAA
1 TTAATAATAT-TTTAATAA
* *
22460 TGAATAATATTATTTATATAT
1 TTAATAATA-T-TTTA-ATAA
* * *
22481 TTAATATTAATCTAATAA
1 TTAATAATATTTTAATAA
22499 TCTAATAATATTTTAATAA
1 T-TAATAATATTTTAATAA
22518 AGATATTTAA
Statistics
Matches: 57, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
18 11 0.19
19 25 0.44
20 11 0.19
21 10 0.18
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (18 bp):
TTAATAATATTTTAATAA
Found at i:22532 original size:23 final size:23
Alignment explanation
Indices: 22512--22556 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
22502 AATAATATTT
22512 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
22535 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
22557 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:22913 original size:34 final size:34
Alignment explanation
Indices: 22845--22913 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
22835 TGTTTTTCAG
* **
22845 AAAAATGTAATTCATTTTTCGGAAAACATTTTCC
1 AAAAATGTAATTCATTTTTCAGAAAACAAATTCC
**
22879 AAAAATGTAATTCATTTTTCAGAATTCAAATTCC
1 AAAAATGTAATTCATTTTTCAGAAAACAAATTCC
22913 A
1 A
22914 GTAATTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (34 bp):
AAAAATGTAATTCATTTTTCAGAAAACAAATTCC
Found at i:22918 original size:29 final size:29
Alignment explanation
Indices: 22885--22943 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
22875 TTCCAAAAAT
22885 GTAATTCATTTTTCAGAATTCAAATTCCA
1 GTAATTCATTTTTCAGAATTCAAATTCCA
* * *
22914 GTAATTCATTTTTCATAATTTAATTTCCA
1 GTAATTCATTTTTCAGAATTCAAATTCCA
22943 G
1 G
22944 AAAACCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.46
Consensus pattern (29 bp):
GTAATTCATTTTTCAGAATTCAAATTCCA
Found at i:45566 original size:17 final size:17
Alignment explanation
Indices: 45544--45577 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45534 AATCCGATCA
45544 AAGTTCATTGCAAATTT
1 AAGTTCATTGCAAATTT
45561 AAGTTCATTGCAAATTT
1 AAGTTCATTGCAAATTT
45578 GCGATGTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
AAGTTCATTGCAAATTT
Found at i:48998 original size:6 final size:6
Alignment explanation
Indices: 48989--49065 Score: 136
Period size: 6 Copynumber: 12.8 Consensus size: 6
48979 ATGGCATTCA
* *
48989 CATACA CATACA CATACG CATACG CATACG CATACG CATACG CATACG
1 CATACG CATACG CATACG CATACG CATACG CATACG CATACG CATACG
49037 CATACG CATACG CATACG CATACG CATAC
1 CATACG CATACG CATACG CATACG CATAC
49066 ATGCTTCCAC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (6 bp):
CATACG
Found at i:58319 original size:20 final size:20
Alignment explanation
Indices: 58294--58331 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58284 ATGAGAGAAG
* *
58294 AAGAAGAAGATAAAGAAAGA
1 AAGAAGAACAAAAAGAAAGA
58314 AAGAAGAACAAAAAGAAA
1 AAGAAGAACAAAAAGAAA
58332 AGATTATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.03
Consensus pattern (20 bp):
AAGAAGAACAAAAAGAAAGA
Found at i:61641 original size:15 final size:15
Alignment explanation
Indices: 61613--61656 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
61603 GTTATATATA
61613 TAAATATATATTTATT
1 TAAA-ATATATTTATT
*
61629 TAAAATATTTTTATT
1 TAAAATATATTTATT
*
61644 TTAAATA-ATTTAT
1 TAAAATATATTTAT
61657 AATTTATTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 5 0.20
15 16 0.64
16 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAAATATATTTATT
Found at i:61646 original size:16 final size:16
Alignment explanation
Indices: 61613--61650 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
61603 GTTATATATA
61613 TAAATATATATTTATT
1 TAAATATATATTTATT
*
61629 TAAA-ATATTTTTATTT
1 TAAATATATATTTA-TT
61645 TAAATA
1 TAAATA
61651 ATTTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 10 0.53
17 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAAATATATATTTATT
Found at i:61873 original size:21 final size:21
Alignment explanation
Indices: 61825--61876 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
61815 TTGGATCGCT
* * *
61825 ACATTAGCAATGTGGACTGCC
1 ACATCAGCATTGTGGACTACC
*
61846 TCATCAGCATTGTGGACTACC
1 ACATCAGCATTGTGGACTACC
*
61867 ACGTCAGCAT
1 ACATCAGCAT
61877 CATAACGGTC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (21 bp):
ACATCAGCATTGTGGACTACC
Found at i:62179 original size:15 final size:15
Alignment explanation
Indices: 62161--62195 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
62151 TTTTATGTTT
62161 GTTCATTTATATTCA
1 GTTCATTTATATTCA
62176 GTTCATTTATATTCA
1 GTTCATTTATATTCA
62191 GTTCA
1 GTTCA
62196 ATCTCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (15 bp):
GTTCATTTATATTCA
Found at i:70340 original size:16 final size:17
Alignment explanation
Indices: 70321--70365 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
70311 ATGCTGGAAT
70321 ATTTAATTTTCAA-ATA
1 ATTTAATTTTCAACATA
*
70337 ATTTAATTTTTAACATA
1 ATTTAATTTTCAACATA
*
70354 ATAT-ATTTTCAA
1 ATTTAATTTTCAA
70366 TTTAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTTTCAACATA
Found at i:74779 original size:37 final size:38
Alignment explanation
Indices: 74722--74796 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
74712 ATTATAAATG
*
74722 TAAAAAATAAAATTACAAAAATTAAAAGTCTCAATTAT
1 TAAAAAATAAAATTACAAAAAATAAAAGTCTCAATTAT
* **
74760 TAAAAAATACAATTA-AAAAAATAAGGGTCTCAATTAT
1 TAAAAAATAAAATTACAAAAAATAAAAGTCTCAATTAT
74797 AAAGATAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 19 0.58
38 14 0.42
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (38 bp):
TAAAAAATAAAATTACAAAAAATAAAAGTCTCAATTAT
Found at i:75586 original size:21 final size:21
Alignment explanation
Indices: 75511--75585 Score: 123
Period size: 21 Copynumber: 3.6 Consensus size: 21
75501 GTTTCCAGAT
* *
75511 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
75532 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
75553 TCGCAATGCGAATTTGGACTA
1 TCGCAATGCGAACTTGGACTA
75574 TCGCAATGCGAA
1 TCGCAATGCGAA
75586 TATGTAAATC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:75598 original size:20 final size:21
Alignment explanation
Indices: 75531--75604 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
75521 AACTTCGACT
*
75531 ATCGCAATGCGAACT-TGGACT
1 ATCGCAATGCGAA-TATGGACA
* *
75552 ATCGCAATGCGAATTTGGACT
1 ATCGCAATGCGAATATGGACA
*
75573 ATCGCAATGCGAATATGTA-A
1 ATCGCAATGCGAATATGGACA
75593 ATCGCAATGCGA
1 ATCGCAATGCGA
75605 TAGTCGAAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.27
21 36 0.73
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (21 bp):
ATCGCAATGCGAATATGGACA
Found at i:75624 original size:21 final size:21
Alignment explanation
Indices: 75600--75666 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
75590 TAAATCGCAA
75600 TGCGATAGTCGAAGTTCGCGT
1 TGCGATAGTCGAAGTTCGCGT
*
75621 TGCGATAGTTC-AAGTTCGCAT
1 TGCGATAG-TCGAAGTTCGCGT
75642 TGCGATAGTCGAAGTTCGCGT
1 TGCGATAGTCGAAGTTCGCGT
75663 TGCG
1 TGCG
75667 TGGTCGTGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.05
21 38 0.90
22 2 0.05
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.30
Consensus pattern (21 bp):
TGCGATAGTCGAAGTTCGCGT
Found at i:75818 original size:21 final size:20
Alignment explanation
Indices: 75794--75911 Score: 78
Period size: 21 Copynumber: 5.7 Consensus size: 20
75784 TTTAGAATAA
*
75794 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAA-TTCGACT
* *
75815 ATCGCAATGCGGATAT-GTA-A
1 ATCGCAATGCGAAT-TCG-ACT
* *
75835 ATTGCAATGCGATAGTCGACT
1 ATCGCAATGCGA-ATTCGACT
*
75856 ATCGCAATGCGAATTTAGACT
1 ATCGCAATGCGAA-TTCGACT
* * **
75877 ATCACAACGTAAACTTCGACT
1 ATCGCAATGCGAA-TTCGACT
75898 ATCGCAATGCGAAT
1 ATCGCAATGCGAAT
75912 ATTGAAGTAG
Statistics
Matches: 72, Mismatches: 19, Indels: 13
0.69 0.18 0.12
Matches are distributed among these distances:
20 16 0.22
21 56 0.78
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATTCGACT
Found at i:76231 original size:19 final size:20
Alignment explanation
Indices: 76202--76254 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 20
76192 GAATTAGAGA
76202 TTAATAAAATTGAA-TTTATT
1 TTAA-AAAATTGAATTTTATT
76222 TTAAAAAATTGAATTTTATT
1 TTAAAAAATTGAATTTTATT
76242 TTAAAAAATTGAA
1 TTAAAAAATTGAA
76255 AAATAATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.28
20 23 0.72
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (20 bp):
TTAAAAAATTGAATTTTATT
Found at i:76263 original size:21 final size:20
Alignment explanation
Indices: 76219--76267 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
76209 AATTGAATTT
** *
76219 ATTTTAAAAAATTGAATTTT
1 ATTTTAAAAAATTGAAAATA
76239 ATTTTAAAAAATTGAAAAATA
1 ATTTTAAAAAATTG-AAAATA
76260 ATTTTAAA
1 ATTTTAAA
76268 TTTATTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (20 bp):
ATTTTAAAAAATTGAAAATA
Found at i:78954 original size:11 final size:9
Alignment explanation
Indices: 78918--78970 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
78908 TTATATGATA
78918 ATTTTA-AT
1 ATTTTATAT
*
78926 TTTTTATAT
1 ATTTTATAT
78935 ATTTTATAT
1 ATTTTATAT
*
78944 ATTTTAAAT
1 ATTTTATAT
* *
78953 ATTTTTTGT
1 ATTTTATAT
78962 ATTTTATAT
1 ATTTTATAT
78971 TAAAAATTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
8 5 0.14
9 31 0.86
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
ATTTTATAT
Found at i:78965 original size:27 final size:26
Alignment explanation
Indices: 78918--78970 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
78908 TTATATGATA
78918 ATTTTAATTTTTTATATATTTTATAT
1 ATTTTAATTTTTTATATATTTTATAT
*
78944 ATTTTAAATATTTTT-TGTATTTTATAT
1 ATTTT-AAT-TTTTTATATATTTTATAT
78971 TAAAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (26 bp):
ATTTTAATTTTTTATATATTTTATAT
Found at i:93519 original size:21 final size:20
Alignment explanation
Indices: 93479--93520 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
93469 CCAACTTACA
*
93479 ATGCATTATGAACCATTATT
1 ATGCATTATCAACCATTATT
*
93499 ATGCATTATACAACTATTATT
1 ATGCATTAT-CAACCATTATT
93520 A
1 A
93521 GTTGCATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (20 bp):
ATGCATTATCAACCATTATT
Found at i:93547 original size:20 final size:20
Alignment explanation
Indices: 93522--93560 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
93512 CTATTATTAG
93522 TTGCATGACAACTAATAATT
1 TTGCATGACAACTAATAATT
93542 TTGCATGACAACTAATAAT
1 TTGCATGACAACTAATAAT
93561 CTCTCACTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (20 bp):
TTGCATGACAACTAATAATT
Found at i:98213 original size:20 final size:20
Alignment explanation
Indices: 98188--98227 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98178 CTATTATTAG
98188 TTGCATGACAACTAATAATT
1 TTGCATGACAACTAATAATT
98208 TTGCATGACAACTAATAATT
1 TTGCATGACAACTAATAATT
98228 CCGACATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TTGCATGACAACTAATAATT
Found at i:101347 original size:7 final size:7
Alignment explanation
Indices: 101331--101377 Score: 69
Period size: 7 Copynumber: 6.9 Consensus size: 7
101321 TTACAAAATA
101331 TAAA-TT
1 TAAATTT
101337 TAAATTT
1 TAAATTT
101344 TAAATTT
1 TAAATTT
101351 TAAATTT
1 TAAATTT
*
101358 TAAATCT
1 TAAATTT
*
101365 TAAATTC
1 TAAATTT
101372 TAAATT
1 TAAATT
101378 ATAATTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
6 4 0.11
7 33 0.89
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (7 bp):
TAAATTT
Found at i:107906 original size:236 final size:236
Alignment explanation
Indices: 107493--107965 Score: 892
Period size: 236 Copynumber: 2.0 Consensus size: 236
107483 ATAGATGAAG
*
107493 ACTTAAATTTCCTACATGAAGCAAAAGCTGGTTGAATTCATGAATAAAAAAGAATGCTAGGGAGA
1 ACTTAAATTTCCTACATGAAGCAAAAGCTGGTTGAATTCATGAATAAAAAAGAATGCTAGGGAAA
* *
107558 GAACTGACTGCCCCTAAAGAGATCACCATCAATTCGCCGAACCAATTCCTTCAGCTTGAATACAA
66 GAACTGACTGCCCCTAAAGAGATCACCATCAAATCGCCGAACAAATTCCTTCAGCTTGAATACAA
107623 GCCTCTGGATTCCTGGTTGAGCAAAGGTGTAATGGTCTTGCATGCCATCAAGCAACTGTGACAAG
131 GCCTCTGGATTCCTGGTTGAGCAAAGGTGTAATGGTCTTGCATGCCATCAAGCAACTGTGACAAG
107688 CACCAATAACAGTCGGCTTCTATGTTGGTGATATTCACCGA
196 CACCAATAACAGTCGGCTTCTATGTTGGTGATATTCACCGA
*
107729 ACTTAAATTTCCTACATGAAGCAAAAGCTGGTTGAATTCATGAATAAAAAAGAATGCTAGTGAAA
1 ACTTAAATTTCCTACATGAAGCAAAAGCTGGTTGAATTCATGAATAAAAAAGAATGCTAGGGAAA
*
107794 GAACTGACTGCCCCTAAAGAGATTACCATCAAATCGCCGAACAAATTCCTTCAGCTTGAATACAA
66 GAACTGACTGCCCCTAAAGAGATCACCATCAAATCGCCGAACAAATTCCTTCAGCTTGAATACAA
107859 GCCTCTGGATTCCTGGTTGAGCAAAGGTGTAATGGTCTTGCATGCCATCAAGCAACTGTGACAAG
131 GCCTCTGGATTCCTGGTTGAGCAAAGGTGTAATGGTCTTGCATGCCATCAAGCAACTGTGACAAG
*
107924 CACCAATAACAGTTGGCTTCTATGTTGGTGATATTCACCGA
196 CACCAATAACAGTCGGCTTCTATGTTGGTGATATTCACCGA
107965 A
1 A
107966 GATAAATCAG
Statistics
Matches: 231, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
236 231 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (236 bp):
ACTTAAATTTCCTACATGAAGCAAAAGCTGGTTGAATTCATGAATAAAAAAGAATGCTAGGGAAA
GAACTGACTGCCCCTAAAGAGATCACCATCAAATCGCCGAACAAATTCCTTCAGCTTGAATACAA
GCCTCTGGATTCCTGGTTGAGCAAAGGTGTAATGGTCTTGCATGCCATCAAGCAACTGTGACAAG
CACCAATAACAGTCGGCTTCTATGTTGGTGATATTCACCGA
Found at i:117069 original size:20 final size:20
Alignment explanation
Indices: 116958--117098 Score: 167
Period size: 21 Copynumber: 6.8 Consensus size: 20
116948 AGGGTGTCAA
116958 AGTGCATCCATGCACTCATGC
1 AGTGCATCCATGCAC-CATGC
*
116979 AGTGCATCCATGCACCCCTGC
1 AGTGCATCCATGCA-CCATGC
* *
117000 AGTACATCCATGCACCCCTGC
1 AGTGCATCCATGCA-CCATGC
*
117021 AGTGTATCCATGCACC-TGCCAC
1 AGTGCATCCATGCACCATG---C
*
117043 TAGTGCATCGATGCACCATGC
1 -AGTGCATCCATGCACCATGC
117064 AGTGCATCCATGCACCATGC
1 AGTGCATCCATGCACCATGC
117084 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
117099 TCCATTTCGA
Statistics
Matches: 107, Mismatches: 7, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
19 2 0.02
20 36 0.34
21 51 0.48
22 2 0.02
23 14 0.13
24 2 0.02
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.21
Consensus pattern (20 bp):
AGTGCATCCATGCACCATGC
Found at i:119868 original size:21 final size:21
Alignment explanation
Indices: 119806--119884 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
119796 AGGGTGTCAA
* * *
119806 AGTGCATCTATGCACTCATGC
1 AGTGCATCCATGCACCCCTGC
* *
119827 AGTGCGTCTATGCATCCCCTGC
1 AGTGCATCCATGCA-CCCCTGC
*
119849 AGTGCATCCATGCACCCCTGT
1 AGTGCATCCATGCACCCCTGC
119870 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
119885 TTGCCACTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
21 34 0.67
22 17 0.33
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.25
Consensus pattern (21 bp):
AGTGCATCCATGCACCCCTGC
Found at i:119944 original size:30 final size:30
Alignment explanation
Indices: 119872--119945 Score: 130
Period size: 30 Copynumber: 2.4 Consensus size: 30
119862 ACCCCTGTAG
*
119872 TGCATCCATGCACTTGCCACTAGTGCATCGA
1 TGCA-CCATGCAGTTGCCACTAGTGCATCGA
119903 TGCACCATGCAGTTGCCACTAGTGCATCGA
1 TGCACCATGCAGTTGCCACTAGTGCATCGA
119933 TGCACCATGCAGT
1 TGCACCATGCAGT
119946 GCATCCATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 38 0.90
31 4 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (30 bp):
TGCACCATGCAGTTGCCACTAGTGCATCGA
Found at i:120002 original size:20 final size:20
Alignment explanation
Indices: 119977--120051 Score: 105
Period size: 20 Copynumber: 3.8 Consensus size: 20
119967 AATGCAATTA
* *
119977 GTGCATCGATGCACCCTGCT
1 GTGCATCCATGCACCCTACT
* *
119997 GTGCATCCATGCATCATACT
1 GTGCATCCATGCACCCTACT
*
120017 GTGCATCCATGCATCCTACT
1 GTGCATCCATGCACCCTACT
120037 GTGCATCCATGCACC
1 GTGCATCCATGCACC
120052 AAGACTGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.27
Consensus pattern (20 bp):
GTGCATCCATGCACCCTACT
Found at i:131342 original size:21 final size:21
Alignment explanation
Indices: 131227--131342 Score: 62
Period size: 21 Copynumber: 5.6 Consensus size: 21
131217 TGACCAACAA
131227 AATCGCAACGCGA-TATCCAG
1 AATCGCAACGCGATTATCCAG
** * *
131247 AATCGCAAATC-AGTT-CCCAT
1 AATCGCAACGCGA-TTATCCAG
* **
131267 AATCACAACGCGATTATGAAG
1 AATCGCAACGCGATTATCCAG
* *
131288 AATCGCAATGCGA-TAGTACA-
1 AATCGCAACGCGATTA-TCCAG
** *
131308 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTATCCAG
131330 AATCGCAACGCGA
1 AATCGCAACGCGA
131343 ACATATAAAT
Statistics
Matches: 68, Mismatches: 20, Indels: 15
0.66 0.19 0.15
Matches are distributed among these distances:
19 1 0.01
20 26 0.38
21 38 0.56
22 3 0.04
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (21 bp):
AATCGCAACGCGATTATCCAG
Found at i:131371 original size:20 final size:20
Alignment explanation
Indices: 131348--131542 Score: 165
Period size: 20 Copynumber: 9.6 Consensus size: 20
131338 CGCGAACATA
131348 TAAATCGCAACGAGTATCCG
1 TAAATCGCAACGAGTATCCG
*
131368 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGAGTATCCG
** *
131389 TAAATCGCAACGACAATACG
1 TAAATCGCAACGAGTATCCG
* * *
131409 TAAAATCACAATGCGTATCCG
1 T-AAATCGCAACGAGTATCCG
* * *
131430 TAAATTGCAACGAGAATACG
1 TAAATCGCAACGAGTATCCG
* * *
131450 TAAACCGCAACGCGTATCTG
1 TAAATCGCAACGAGTATCCG
* * *
131470 TAAATCACAACGAGAATACG
1 TAAATCGCAACGAGTATCCG
* * *
131490 TAAATCGTAATGCGTATCCG
1 TAAATCGCAACGAGTATCCG
** *
131510 TAAATCGCAACGACAATACG
1 TAAATCGCAACGAGTATCCG
131530 TAAAATCGCAACG
1 T-AAATCGCAACG
131543 CGATTTTTAA
Statistics
Matches: 131, Mismatches: 41, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
20 87 0.66
21 44 0.34
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.19
Consensus pattern (20 bp):
TAAATCGCAACGAGTATCCG
Found at i:131481 original size:40 final size:41
Alignment explanation
Indices: 131348--131544 Score: 272
Period size: 40 Copynumber: 4.9 Consensus size: 41
131338 CGCGAACATA
* *
131348 TAAATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCG
1 TAAATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCG
* * *
131389 TAAATCGCAACGACAATACGTAAAATCACAATGCGTATCCG
1 TAAATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCG
* * *
131430 TAAATTGCAACGAGAATACGT-AAACCGCAACGCGTATCTG
1 TAAATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCG
* * *
131470 TAAATCACAACGAGAATACGT-AAATCGTAATGCGTATCCG
1 TAAATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCG
*
131510 TAAATCGCAACGACAATACGTAAAATCGCAACGCG
1 TAAATCGCAACGAGAATACGTAAAATCGCAACGCG
131545 ATTTTTAAAG
Statistics
Matches: 134, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
40 68 0.51
41 66 0.49
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (41 bp):
TAAATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCG
Found at i:132163 original size:21 final size:21
Alignment explanation
Indices: 132102--132180 Score: 94
Period size: 20 Copynumber: 3.9 Consensus size: 21
132092 TTCTAAACTT
132102 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
132122 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
132142 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
132163 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
132181 TCGCAACGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 30 0.58
21 22 0.42
ACGTcount: A:0.52, C:0.18, G:0.19, T:0.11
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:132184 original size:14 final size:14
Alignment explanation
Indices: 132162--132259 Score: 70
Period size: 14 Copynumber: 6.3 Consensus size: 14
132152 CGAGAGAAAT
132162 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
132176 GAGAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
132194 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
132209 GATAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
132227 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
132242 GATAATCGCAACGC
1 GAAAATCGCAACGA
132256 GAAA
1 GAAA
132260 TGAAAATCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 20
0.71 0.07 0.21
Matches are distributed among these distances:
14 35 0.52
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.30
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.10
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:132198 original size:33 final size:33
Alignment explanation
Indices: 132157--132273 Score: 225
Period size: 33 Copynumber: 3.5 Consensus size: 33
132147 CGCAACGAGA
*
132157 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGATAATCGCAACGC
132190 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGATAATCGCAACGC
132223 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGATAATCGCAACGC
132256 GAAATGAAAATCGCAACG
1 GAAATGAAAATCGCAACG
132274 CGAAACCAAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGATAATCGCAACGC
Found at i:132203 original size:19 final size:19
Alignment explanation
Indices: 132102--132289 Score: 136
Period size: 19 Copynumber: 10.5 Consensus size: 19
132092 TTCTAAACTT
**
132102 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
*
132122 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
** *
132142 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
132163 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
*
132177 AGAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
132196 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
*
132210 ATAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
132229 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
*
132243 ATAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
**
132262 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATG
132281 AAAATCGCA
1 AAAATCGCA
132290 TTGCGATTTT
Statistics
Matches: 135, Mismatches: 16, Indels: 35
0.73 0.09 0.19
Matches are distributed among these distances:
14 30 0.22
15 3 0.02
16 6 0.04
17 5 0.04
18 3 0.02
19 46 0.34
20 28 0.21
21 13 0.10
22 1 0.01
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:132307 original size:19 final size:19
Alignment explanation
Indices: 132285--132416 Score: 130
Period size: 19 Copynumber: 7.1 Consensus size: 19
132275 GAAACCAAAA
*
132285 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
132304 TCGCGTTGCGATTTTC---
1 TCGCGTTGCGATTTTCATT
*
132320 T--CGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
132337 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* **
132356 TTGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
* **
132375 TCCGCATTGCGATAGTCATT
1 T-CGCGTTGCGATTTTCATT
*
132395 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
132415 TC
1 TC
132417 AACCAAAAGA
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
14 12 0.13
16 1 0.01
17 1 0.01
19 49 0.52
20 30 0.32
21 1 0.01
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:132324 original size:14 final size:14
Alignment explanation
Indices: 132302--132332 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
132292 GCGATTTTCA
132302 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
*
132316 TTTCTCGTTGCGAT
1 TTTCGCGTTGCGAT
132330 TTT
1 TTT
132333 AATTTCGCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.23, T:0.52
Consensus pattern (14 bp):
TTTCGCGTTGCGAT
Found at i:132360 original size:33 final size:33
Alignment explanation
Indices: 132290--132352 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
132280 CAAAATCGCA
*
132290 TTGCGATTTTCATTTCGCGTTGCGATTTTCTCG
1 TTGCGATTTTAATTTCGCGTTGCGATTTTCTCG
132323 TTGCGATTTTAATTTCGCGTTGCGATTTTC
1 TTGCGATTTTAATTTCGCGTTGCGATTTTC
132353 ATTTTGCGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.11, C:0.19, G:0.21, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTAATTTCGCGTTGCGATTTTCTCG
Found at i:132404 original size:20 final size:18
Alignment explanation
Indices: 132334--132407 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 18
132324 TGCGATTTTA
**
132334 ATTTCGCGTTGCGATTTTC
1 ATTTC-CGTTGCGATAGTC
*
132353 ATTTTGCGTTGCGATAGTC
1 A-TTTCCGTTGCGATAGTC
132372 ATTTCCGCATTGCGATAGTC
1 ATTTCCG--TTGCGATAGTC
132392 ATTCTCTCGTTGCGAT
1 ATT-TC-CGTTGCGAT
132408 TTTCATTTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
18 5 0.11
19 13 0.28
20 24 0.52
21 2 0.04
22 2 0.04
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.42
Consensus pattern (18 bp):
ATTTCCGTTGCGATAGTC
Found at i:134273 original size:94 final size:94
Alignment explanation
Indices: 134112--134491 Score: 638
Period size: 94 Copynumber: 4.1 Consensus size: 94
134102 TAGATTGCTT
* *
134112 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
134177 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
*
134206 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGAGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
134271 ATTTGTCTTTGTTTTATCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* *
134300 AGTAAATTTGTTCGGTTGCTGCCAACTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
134365 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* * * *
134394 AGTAAATTTGTTCGGTTGCTGCCAATTCTACTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
134459 AGTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
134487 AGTAA
1 AGTAA
134492 TGCAATCCAT
Statistics
Matches: 272, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
93 25 0.09
94 247 0.91
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (94 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:134603 original size:40 final size:36
Alignment explanation
Indices: 134555--134644 Score: 105
Period size: 33 Copynumber: 2.4 Consensus size: 36
134545 CACGAAACTT
134555 AAAATCGCAACGTGAAAAATGACTATCGCAACGCGAAACC
1 AAAATCGCAACG-GAAAAA-GA--ATCGCAACGCGAAACC
*
134595 AAAATCGCAAC-G--AGAGAATCGCAACGCGAAACC
1 AAAATCGCAACGGAAAAAGAATCGCAACGCGAAACC
134628 AAAATCGCAACGCGAAA
1 AAAATCGCAACG-GAAA
134645 CTATAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
33 27 0.60
35 3 0.07
36 2 0.04
37 1 0.02
38 1 0.02
40 11 0.24
ACGTcount: A:0.47, C:0.26, G:0.19, T:0.09
Consensus pattern (36 bp):
AAAATCGCAACGGAAAAAGAATCGCAACGCGAAACC
Found at i:134654 original size:19 final size:19
Alignment explanation
Indices: 134579--134645 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
134569 AAAAATGACT
134579 ATCGCAACGCGAAACCAAA
1 ATCGCAACGCGAAACCAAA
* *
134598 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAACCAAA
134612 ATCGCAACGCGAAACCAAA
1 ATCGCAACGCGAAACCAAA
134631 ATCGCAACGCGAAAC
1 ATCGCAACGCGAAAC
134646 TATAATCGCG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
14 9 0.23
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.45, C:0.30, G:0.19, T:0.06
Consensus pattern (19 bp):
ATCGCAACGCGAAACCAAA
Found at i:134712 original size:20 final size:20
Alignment explanation
Indices: 134687--134735 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
134677 GCGATTCTCT
*
134687 CATTGCGATAGTTATTTTCG
1 CATTGCGATAGTCATTTTCG
134707 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
134727 CGTTGCGAT
1 CATTGCGAT
134736 TTTAAGTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (20 bp):
CATTGCGATAGTCATTTTCG
Found at i:136878 original size:20 final size:20
Alignment explanation
Indices: 136853--136905 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
136843 GATCTTCCAG
*
136853 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACAT-ATA
136873 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAACATATA
136893 AATCGCAACGCGA
1 AATCGCAACGCGA
136906 TTCTGACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.43, C:0.25, G:0.19, T:0.13
Consensus pattern (20 bp):
AATCGCAACGCGAACATATA
Found at i:136989 original size:40 final size:40
Alignment explanation
Indices: 136933--137061 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
136923 AGTATCCGTA
* * *
136933 AAATCGCAATGTGTATCCGTATATTGCAACGAGAATACGT
1 AAATCGCAACGCGTATCCGTAAATTGCAACGAGAATACGT
*
136973 AAATCGCAACGCGTATCTGTAAATTGCAACGAGAATACGT
1 AAATCGCAACGCGTATCCGTAAATTGCAACGAGAATACGT
* * * * ** * *
137013 AAATCGCAATGCGAATACATAAATCACAATGCGAATACGT
1 AAATCGCAACGCGTATCCGTAAATTGCAACGAGAATACGT
137053 AAATCGCAA
1 AAATCGCAA
137062 TGTGAATCTG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.22
Consensus pattern (40 bp):
AAATCGCAACGCGTATCCGTAAATTGCAACGAGAATACGT
Found at i:137062 original size:20 final size:20
Alignment explanation
Indices: 136933--137083 Score: 135
Period size: 20 Copynumber: 7.5 Consensus size: 20
136923 AGTATCCGTA
* * *
136933 AAATCGCAATGTGTATCCGT
1 AAATCGCAATGCGAATACGT
* * * *
136953 ATATTGCAACGAGAATACGT
1 AAATCGCAATGCGAATACGT
* *
136973 AAATCGCAACGCGTAT-CTGT
1 AAATCGCAATGCGAATAC-GT
* * *
136993 AAATTGCAACGAGAATACGT
1 AAATCGCAATGCGAATACGT
*
137013 AAATCGCAATGCGAATACAT
1 AAATCGCAATGCGAATACGT
*
137033 AAATCACAATGCGAATACGT
1 AAATCGCAATGCGAATACGT
*
137053 AAATCGCAATGTGAAT-CTGT
1 AAATCGCAATGCGAATAC-GT
137073 AAATCGCAATG
1 AAATCGCAATG
137084 AGATTCTTAC
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
19 2 0.02
20 104 0.97
21 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (20 bp):
AAATCGCAATGCGAATACGT
Found at i:137970 original size:24 final size:24
Alignment explanation
Indices: 137943--137996 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
137933 GTATTCGAAA
137943 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* * *
137967 TTTGATCTTGTTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
137991 TTTGAT
1 TTTGAT
137997 AATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:140578 original size:14 final size:14
Alignment explanation
Indices: 140559--140585 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
140549 CAATGCGAAA
140559 TGAAAATCGCAACG
1 TGAAAATCGCAACG
140573 TGAAAATCGCAAC
1 TGAAAATCGCAAC
140586 ACGAATATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (14 bp):
TGAAAATCGCAACG
Found at i:140596 original size:20 final size:19
Alignment explanation
Indices: 140544--140649 Score: 105
Period size: 19 Copynumber: 5.7 Consensus size: 19
140534 GCAACGAGAG
*
140544 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
140563 AATCGCAA--CG---TGAA
1 AATCGCAACGCGAAATGAA
*
140577 AATCGCAACACGAATATGAA
1 AATCGCAACGCGAA-ATGAA
* *
140597 TATCGCAACGCGGAAATGAC
1 AATCGCAACGC-GAAATGAA
* *
140617 TATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
140636 AATCGCAACGCGAA
1 AATCGCAACGCGAA
140650 TTTAGTTTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.16
16 2 0.03
17 2 0.03
19 27 0.37
20 27 0.37
21 3 0.04
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:140674 original size:19 final size:19
Alignment explanation
Indices: 140650--140690 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
140640 GCAACGCGAA
140650 TTTAGTTTCACGTTGCAAT
1 TTTAGTTTCACGTTGCAAT
* *
140669 TTTAGTTTCGCGTTGCGAT
1 TTTAGTTTCACGTTGCAAT
140688 TTT
1 TTT
140691 GTCGTTGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.51
Consensus pattern (19 bp):
TTTAGTTTCACGTTGCAAT
Found at i:140723 original size:19 final size:19
Alignment explanation
Indices: 140699--140739 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
140689 TTGTCGTTGT
140699 GATTTTCATTTCGCATTGC
1 GATTTTCATTTCGCATTGC
140718 GATTTTCATTTCGCATTGC
1 GATTTTCATTTCGCATTGC
140737 GAT
1 GAT
140740 AGTCATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (19 bp):
GATTTTCATTTCGCATTGC
Found at i:140745 original size:19 final size:19
Alignment explanation
Indices: 140704--140747 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
140694 GTTGTGATTT
**
140704 TCATTTCGCATTGCGATTT
1 TCATTTCGCATTGCGATAG
140723 TCATTTCGCATTGCGATAG
1 TCATTTCGCATTGCGATAG
140742 TCATTT
1 TCATTT
140748 TTGCCTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (19 bp):
TCATTTCGCATTGCGATAG
Found at i:140865 original size:14 final size:14
Alignment explanation
Indices: 140846--140882 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
140836 CATCAATTAA
140846 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
140860 ACAAATCATCTTTT
1 ACAAATCAACTTTT
*
140874 ATAAATCAA
1 ACAAATCAA
140883 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:142321 original size:42 final size:42
Alignment explanation
Indices: 142275--142354 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
142265 CGATGACAGT
* * *
142275 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
142317 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
142355 AATGCGAGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:142710 original size:94 final size:94
Alignment explanation
Indices: 142549--142910 Score: 609
Period size: 94 Copynumber: 3.9 Consensus size: 94
142539 TTAAACAGTG
* *
142549 AAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
1 AAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
142614 CCGAACAAATTTACTTTCAACCAAAAGAC
66 CCGAACAAATTTACTTTCAACCAAAAGAC
*
142643 AAAACAAAGACAAATATTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
1 AAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
*
142708 CCGAACAAATTTACTTTCAACCAAAATAC
66 CCGAACAAATTTACTTTCAACCAAAAGAC
*
142737 AAAACAAAGACAAATACTAATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
1 AAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
*
142802 CCGAATAAATTTAC-TTCAACCAAAAGAC
66 CCGAACAAATTTACTTTCAACCAAAAGAC
* * *
142830 AAAACAAAATACAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCAGTATTGGCAGCA
1 AAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCA
* *
142895 ACTGAATAAATTTACT
65 ACCGAACAAATTTACT
142911 AAGCAATCTA
Statistics
Matches: 253, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
93 18 0.07
94 235 0.93
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.22
Consensus pattern (94 bp):
AAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAA
CCGAACAAATTTACTTTCAACCAAAAGAC
Found at i:144626 original size:20 final size:20
Alignment explanation
Indices: 144603--144658 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
144593 TGAAATGAAA
144603 ATCGCAACGAGAGAATGACT
1 ATCGCAACGAGAGAATGACT
* *
144623 ATCGCAACGCG-GAAATGATT
1 ATCGCAACGAGAG-AATGACT
*
144643 ATCGCAACGAAAGAAT
1 ATCGCAACGAGAGAAT
144659 CGCAACGCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (20 bp):
ATCGCAACGAGAGAATGACT
Found at i:144683 original size:33 final size:33
Alignment explanation
Indices: 144594--144715 Score: 136
Period size: 33 Copynumber: 3.5 Consensus size: 33
144584 TCTTTTGGTT
144594 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAAC--GA-AA-GA--ATCGCAACGC
**
144633 GGAAATGATTATCGCAACGAAAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAAAGAATCGCAACGC
* *
144667 GAAATGAAAATTGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAAAGAATCGCAACGC
*
144700 GAAATAAAAATCGCAA
1 GAAATGAAAATCGCAA
144716 TGCGATTTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
33 43 0.58
34 10 0.14
36 2 0.03
37 2 0.03
38 2 0.03
40 15 0.20
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAAAGAATCGCAACGC
Found at i:144738 original size:19 final size:19
Alignment explanation
Indices: 144716--144823 Score: 99
Period size: 20 Copynumber: 5.5 Consensus size: 19
144706 AAAATCGCAA
** *
144716 TGCGATTTTGGTTTCTCGT
1 TGCGATTTTCATTTCGCGT
144735 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCGCGT
*
144754 TGCGATTTTCATTTCTCTCGT
1 TGCGATTTTCA-TT-TCGCGT
** *
144775 TGCGATAATCATTTTCGTGT
1 TGCGATTTTCA-TTTCGCGT
**
144795 TGCGATTTTCATTTTCATGT
1 TGCGATTTTCA-TTTCGCGT
144815 TGCGATTTT
1 TGCGATTTT
144824 AAGTTTAGAA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
19 27 0.36
20 32 0.42
21 17 0.22
ACGTcount: A:0.12, C:0.18, G:0.19, T:0.51
Consensus pattern (19 bp):
TGCGATTTTCATTTCGCGT
Found at i:144787 original size:40 final size:40
Alignment explanation
Indices: 144727--144820 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
144717 GCGATTTTGG
**
144727 TTTCTCGTTGCGATTTTCA-TTTCGCGTTGCGATTTTCAT
1 TTTCTCGTTGCGATAATCATTTTCGCGTTGCGATTTTCAT
*
144766 TTCTCTCGTTGCGATAATCATTTTCGTGTTGCGATTTTCAT
1 TT-TCTCGTTGCGATAATCATTTTCGCGTTGCGATTTTCAT
144807 TTTCAT-GTTGCGAT
1 TTTC-TCGTTGCGAT
144821 TTTAAGTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
39 2 0.04
40 25 0.51
41 22 0.45
ACGTcount: A:0.13, C:0.19, G:0.18, T:0.50
Consensus pattern (40 bp):
TTTCTCGTTGCGATAATCATTTTCGCGTTGCGATTTTCAT
Found at i:144798 original size:20 final size:20
Alignment explanation
Indices: 144733--144823 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
144723 TTGGTTTCTC
*
144733 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATTTTCATTTTCGT
144752 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCGT
**
144772 CGTTGCGATAATCATTTTCGT
1 -GTTGCGATTTTCATTTTCGT
*
144793 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCGT
144813 GTTGCGATTTT
1 GTTGCGATTTT
144824 AAGTTTAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
19 13 0.21
20 32 0.52
21 17 0.27
ACGTcount: A:0.13, C:0.18, G:0.19, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:145384 original size:20 final size:20
Alignment explanation
Indices: 145359--145568 Score: 183
Period size: 20 Copynumber: 10.3 Consensus size: 20
145349 CTTTAAAAAT
145359 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
145379 CGCGTTACGATTTTAC--ATA
1 CGCGTTGCGA-TTTACGGATA
* *
145398 TTGTCGTTGAGATTTACGGATA
1 -CG-CGTTGCGATTTACGGATA
* * * *
145420 CGCATTACGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* * *
145440 CTCGTTGCCATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
145460 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* *
145480 CTCGTTGCGATTTACTGATA
1 CGCGTTGCGATTTACGGATA
*
145500 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
145520 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
*
145541 CGGGTTGCGATTTTACGGATA
1 CGCGTTGCGA-TTTACGGATA
*
145562 CTCGTTG
1 CGCGTTG
145569 TGATAGTCAG
Statistics
Matches: 146, Mismatches: 35, Indels: 17
0.74 0.18 0.09
Matches are distributed among these distances:
19 3 0.02
20 97 0.66
21 43 0.29
22 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:145418 original size:41 final size:41
Alignment explanation
Indices: 145361--145568 Score: 285
Period size: 41 Copynumber: 5.1 Consensus size: 41
145351 TTAAAAATCG
* * *
145361 CGTTGCGATTTACGGATACGCGTTACGATTTTACATATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* * *
145402 CGTTGAGATTTACGGATACGCATTACGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
145442 CGTTGCCATTTACAGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
145482 CGTTGCGATTTACTGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* * *
145523 CGTTGCGATTTACGGATACGGGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
145564 CGTTG
1 CGTTG
145569 TGATAGTCAG
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 71 0.48
41 78 0.52
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:145506 original size:60 final size:59
Alignment explanation
Indices: 145359--145568 Score: 181
Period size: 61 Copynumber: 3.4 Consensus size: 59
145349 CTTTAAAAAT
* * *
145359 CGCGTTGCGATTTACGGATACGCGTTACGATTTTACATATTGTCGTTGAGATTTACGGATA
1 CGCGTTGCGATTTAC-GATACGCGTTGCGA-TTTACAGATCGTCGTTGAGATTTACGGATA
* * * * * * * *
145420 CGCATTACGATTTACGTATTCTCGTTGCCATTTACAGATACG-CGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACG-ATACGCGTTGCGATTTACAGAT-CGTCGTTGAGATTTACGGATA
* * *
145480 CTCGTTGCGATTTACTGATACGCGTTGCGATTTTAC-GTATTGTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTAC-GATACGCGTTGCGA-TTTACAG-ATCGTCGTTGAGATTTACGGATA
* *
145541 CGGGTTGCGATTTTACGGATACTCGTTG
1 CGCGTTGCGA-TTTAC-GATACGCGTTG
145569 TGATAGTCAG
Statistics
Matches: 118, Mismatches: 24, Indels: 13
0.76 0.15 0.08
Matches are distributed among these distances:
60 48 0.41
61 55 0.47
62 15 0.13
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (59 bp):
CGCGTTGCGATTTACGATACGCGTTGCGATTTACAGATCGTCGTTGAGATTTACGGATA
Found at i:145604 original size:20 final size:20
Alignment explanation
Indices: 145581--145633 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
145571 ATAGTCAGAA
* *
145581 TCGCGTTACGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
145601 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
145621 TCGCGTTGCGATT
1 TCGCGTTGCGATT
145634 CTCCAGAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.15, C:0.19, G:0.23, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:145861 original size:14 final size:14
Alignment explanation
Indices: 145842--145877 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
145832 ATTGTTTAAT
145842 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
145856 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
145870 TGATTTGT
1 TGATTTGT
145878 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:146036 original size:33 final size:34
Alignment explanation
Indices: 145979--146074 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 34
145969 AAAACAGACT
* **
145979 ATCGCAACGCGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
*
146013 ATCGCAATGCG-AAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
146046 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAAATGAAAATCGCAACG
146075 CGAAACTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 30 0.53
34 27 0.47
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
Found at i:146070 original size:20 final size:19
Alignment explanation
Indices: 146012--146079 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
146002 GCAACGAGAG
146012 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
146031 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
146045 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
146065 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
146080 CTAATTTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 8 0.20
16 5 0.12
17 2 0.05
18 3 0.08
19 11 0.28
20 11 0.28
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:146109 original size:20 final size:19
Alignment explanation
Indices: 146083--146292 Score: 206
Period size: 19 Copynumber: 11.3 Consensus size: 19
146073 CGCGAAACTA
*
146083 ATTTCGCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
146102 ATTTTCGCATTGCGATTTTC
1 A-TTTCGCATTGCGATTTTC
146122 ATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
*
146141 ATTTCGAATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
**
146160 ATTTCGCATTGCGATAGTC
1 ATTTCGCATTGCGATTTTC
*
146179 ATTTCTGCGTTGCGA--TTC
1 ATTTC-GCATTGCGATTTTC
* **
146197 -TCTCG--TTGCGATAGTC
1 ATTTCGCATTGCGATTTTC
146213 ATTTTCGCATTGCGA-TTT-
1 A-TTTCGCATTGCGATTTTC
*
146231 A-CTCG--TTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
* *
146247 ATTTCGCATTGAGTTTTTC
1 ATTTCGCATTGCGATTTTC
146266 ATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGATT-T-TC
146287 ATTTCG
1 ATTTCG
146293 ATAGTCATTT
Statistics
Matches: 158, Mismatches: 18, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
14 12 0.08
15 3 0.02
16 7 0.04
17 6 0.04
18 7 0.04
19 82 0.52
20 33 0.21
21 8 0.05
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (19 bp):
ATTTCGCATTGCGATTTTC
Found at i:146110 original size:39 final size:39
Alignment explanation
Indices: 146067--146144 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
146057 AAAATGAAAA
*
146067 TCGCAACGCGAAACTAATTTCGCGTTGCGATTTTCATTT
1 TCGCAACGCGAAACTAATTTCGCATTGCGATTTTCATTT
** *** *
146106 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTT
1 TCGCAACGCGAAACTAATTTCGCATTGCGATTTTCATTT
146145 CGAATTGCGA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (39 bp):
TCGCAACGCGAAACTAATTTCGCATTGCGATTTTCATTT
Found at i:146211 original size:34 final size:35
Alignment explanation
Indices: 146168--146251 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 35
146158 TCATTTCGCA
*
146168 TTGCGATAGTCATTTCT-GCGTTGCGATTCT-CTCG
1 TTGCGATAGTCATTTCTCGCATTGCGATT-TACTCG
146202 TTGCGATAGTCATTT-TCGCATTGCGATTTACTCG
1 TTGCGATAGTCATTTCTCGCATTGCGATTTACTCG
**
146236 TTGCGATTTTCATTTC
1 TTGCGATAGTCATTTC
146252 GCATTGAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
33 2 0.05
34 42 0.95
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.44
Consensus pattern (35 bp):
TTGCGATAGTCATTTCTCGCATTGCGATTTACTCG
Found at i:146312 original size:86 final size:87
Alignment explanation
Indices: 146109--146314 Score: 245
Period size: 86 Copynumber: 2.3 Consensus size: 87
146099 TTCATTTTCG
** * *
146109 CATTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCGAATTGCGATTTTCATTTCGCATTGCG
1 CATTGCGATAGTCATTTCCGCATTGCGA-TTT-A-CTCG--TTGCGATTTTCATTTCGCATTGAG
*
146173 ATAGTCATTTCTGCGTTGCGATTCTCT
61 ATAGTCATTTCTGCATTGCGATTCTCT
* * * **
146200 CGTTGCGATAGTCATTTTCGCATTGCGATTTACTCGTTGCGATTTTCATTTCGCATTGAGTTTTT
1 CATTGCGATAGTCATTTCCGCATTGCGATTTACTCGTTGCGATTTTCATTTCGCATTGAGATAGT
146265 CATTTC-GCATTGCGATTCTCT
66 CATTTCTGCATTGCGATTCTCT
* *
146286 CATTTCGATAGTCATTTCCGCGTTGCGAT
1 CATTGCGATAGTCATTTCCGCATTGCGAT
146315 AGTCAATTCT
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
86 39 0.39
87 31 0.31
89 3 0.03
90 1 0.01
91 17 0.17
92 10 0.10
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.44
Consensus pattern (87 bp):
CATTGCGATAGTCATTTCCGCATTGCGATTTACTCGTTGCGATTTTCATTTCGCATTGAGATAGT
CATTTCTGCATTGCGATTCTCT
Found at i:146316 original size:20 final size:20
Alignment explanation
Indices: 146291--146379 Score: 108
Period size: 20 Copynumber: 4.5 Consensus size: 20
146281 TCTCTCATTT
146291 CGATAGTCATTTCCGCGTTG
1 CGATAGTCATTTCCGCGTTG
* ** *
146311 CGATAGTCAATTCTACATTG
1 CGATAGTCATTTCCGCGTTG
*
146331 CGATAGTCATTTCCGTGTTG
1 CGATAGTCATTTCCGCGTTG
*
146351 TGATAGTCATATT-CGCGTTG
1 CGATAGTCAT-TTCCGCGTTG
146371 CGATAGTCA
1 CGATAGTCA
146380 AATGAATGTC
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 54 0.96
21 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (20 bp):
CGATAGTCATTTCCGCGTTG
Found at i:146330 original size:106 final size:106
Alignment explanation
Indices: 146130--146334 Score: 240
Period size: 106 Copynumber: 1.9 Consensus size: 106
146120 TCATTTCGCA
* * * *
146130 TTGCGATTTTCATTTCGAATTGCGATTTTCATTTCGCATTGCGATAGTCATTTCTGCGTTGCGAT
1 TTGCGATTTTCATTTCGAATTGAGATTTTCATTTCGCATTGCGATACTCATTTCTGCATAGCGAT
* * *
146195 TCTCTCGTTGCGATAGTCATTTTCGCATTGCGATTTACTCG
66 TCTCGCGTTGCGATAGTCATTCTCACATTGCGATTTACTCG
* * *
146236 TTGCGATTTTCATTTCGCATTGAGTTTTTCATTTCGCATTGCGATTCTCTCATTTC-G-ATAGTC
1 TTGCGATTTTCATTTCGAATTGAGATTTTCATTTCGCATTGCGA-T-ACTCATTTCTGCATAG-C
146299 -ATT-TCCGCGTTGCGATAGTCAATTCT-ACATTGCGAT
63 GATTCT-CGCGTTGCGATAGTC-ATTCTCACATTGCGAT
146335 AGTCATTTCC
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
105 1 0.01
106 69 0.82
107 7 0.08
108 7 0.08
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (106 bp):
TTGCGATTTTCATTTCGAATTGAGATTTTCATTTCGCATTGCGATACTCATTTCTGCATAGCGAT
TCTCGCGTTGCGATAGTCATTCTCACATTGCGATTTACTCG
Found at i:146335 original size:40 final size:40
Alignment explanation
Indices: 146286--146379 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
146276 GCGATTCTCT
*
146286 CATTTCGATAGTCATTTCCGCGTTGCGATAGTCA-ATTCTA
1 CATTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTC-A
* * *
146326 CATTGCGATAGTCATTTCCGTGTTGTGATAGTCATATTCG
1 CATTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCA
*
146366 CGTTGCGATAGTCA
1 CATTGCGATAGTCA
146380 AATGAATGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (40 bp):
CATTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCA
Found at i:148845 original size:24 final size:24
Alignment explanation
Indices: 148794--148845 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
148784 ATCTGAGTAT
** *
148794 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
148818 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
148842 TGAC
1 TGAC
148846 TAGTACTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:149706 original size:20 final size:19
Alignment explanation
Indices: 149691--149862 Score: 175
Period size: 20 Copynumber: 8.6 Consensus size: 19
149681 GTCAGAATCT
149691 CGTTGCGATTTACAGATTCG
1 CGTTGCGATTTAC-GATTCG
*
149711 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACG-ATTCG
149731 CGTTGCGATTTTACGTATT-G
1 CGTTGCGA-TTTACG-ATTCG
* *
149751 TAGTTGCGATTTACGAATACG
1 -CGTTGCGATTTACG-ATTCG
* *
149772 CATTGCGATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
149792 CGTTGCGATTTACAGATACG
1 CGTTGCGATTTAC-GATTCG
*
149812 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACG-ATTCG
*
149832 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTAC-GATTCG
149852 CGTTGCGATTT
1 CGTTGCGATTT
149863 TACGTATTGT
Statistics
Matches: 128, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
19 2 0.02
20 106 0.83
21 20 0.16
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (19 bp):
CGTTGCGATTTACGATTCG
Found at i:149735 original size:40 final size:39
Alignment explanation
Indices: 149691--149870 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 39
149681 GTCAGAATCT
*
149691 CGTTGCGATTTACAG-ATTCGCATTGCGATTTACGTATTCG
1 CGTTGCGATTTAC-GTATTCGCATTGCGATTTACG-ATACG
*
149731 CGTTGCGATTTTACGTATT-GTAGTTGCGATTTACGAATACG
1 CGTTGCGA-TTTACGTATTCGCA-TTGCGATTTACG-ATACG
* * *
149772 CATTGCGATTTACGTATTCTCGTTGCGATTTACAGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTAC-GATACG
* *
149812 CGTTGCGATTTACGTATTCTCGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTAC-GATACG
149852 CGTTGCGATTTTACGTATT
1 CGTTGCGA-TTTACGTATT
149871 GTTGTTGCGA
Statistics
Matches: 125, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
40 83 0.66
41 42 0.34
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (39 bp):
CGTTGCGATTTACGTATTCGCATTGCGATTTACGATACG
Found at i:150011 original size:20 final size:20
Alignment explanation
Indices: 149941--150015 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 20
149931 AATTTTTACT
** *
149941 ATCGCATTGCGATTCTTCATA
1 ATCGCATTGCGATTCTGGA-G
*
149962 ATCGCGTTGCGATTCTGG-G
1 ATCGCATTGCGATTCTGGAG
*
149981 AACTG-ATTTGCGATTCTGGAG
1 ATC-GCA-TTGCGATTCTGGAG
150002 ATCGCATTGCGATT
1 ATCGCATTGCGATT
150016 TTTATTTCGC
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.05
20 22 0.51
21 19 0.44
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
ATCGCATTGCGATTCTGGAG
Found at i:160607 original size:70 final size:70
Alignment explanation
Indices: 160494--160633 Score: 217
Period size: 70 Copynumber: 2.0 Consensus size: 70
160484 CATGTATTTG
** * *
160494 ATCTATCATTTTCTTTTTGAAACAACGGGGACCTCTAGTTTAACTTCGTTTACCTAGGATTCTTT
1 ATCTATCATTAGCCTTTTGAAACAACGGGGACCTCCAGTTTAACTTCGTTTACCTAGGATTCTTT
160559 CTTTT
66 CTTTT
* * *
160564 ATCTATCATTAGCCTTTTGAAACACCGGGGGCCTCCAGTTTAACTTCGTTTACCTATGATTCTTT
1 ATCTATCATTAGCCTTTTGAAACAACGGGGACCTCCAGTTTAACTTCGTTTACCTAGGATTCTTT
160629 CTTTT
66 CTTTT
160634 CAGCCCCCGT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.44
Consensus pattern (70 bp):
ATCTATCATTAGCCTTTTGAAACAACGGGGACCTCCAGTTTAACTTCGTTTACCTAGGATTCTTT
CTTTT
Found at i:160780 original size:30 final size:30
Alignment explanation
Indices: 160710--160784 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
160700 CTACTCTACT
* *
160710 TTTCTTCCTTCCTTTTCAGCTTCAGTAATGA
1 TTTCTT-CTTTCTTTTCAGCTTCAGCAATGA
* *
160741 CTTCATCTTTCTTTTCAGCTTCAGCAAT-A
1 TTTCTTCTTTCTTTTCAGCTTCAGCAATGA
160770 GTTTCTTCTTTCTTT
1 -TTTCTTCTTTCTTT
160785 GCTTCTTCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 1 0.03
30 32 0.86
31 4 0.11
ACGTcount: A:0.15, C:0.25, G:0.08, T:0.52
Consensus pattern (30 bp):
TTTCTTCTTTCTTTTCAGCTTCAGCAATGA
Found at i:164716 original size:23 final size:23
Alignment explanation
Indices: 164671--164726 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
164661 TCTGAACATT
* *
164671 CTCAAACTC-AGCCCGATTGAAG
1 CTCAAACTCGAACCCGATTCAAG
*
164693 CTCAAACTCGAACTCGATTCAAG
1 CTCAAACTCGAACCCGATTCAAG
*
164716 CTCGAACTCGA
1 CTCAAACTCGA
164727 GTTCAAACCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 9 0.31
23 20 0.69
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (23 bp):
CTCAAACTCGAACCCGATTCAAG
Found at i:164719 original size:17 final size:18
Alignment explanation
Indices: 164694--164734 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
164684 CGATTGAAGC
164694 TCAAACTCGAACTCGA-T
1 TCAAACTCGAACTCGAGT
*
164711 TCAAGCTCGAACTCGAGT
1 TCAAACTCGAACTCGAGT
164729 TCAAAC
1 TCAAAC
164735 CTGGATCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (18 bp):
TCAAACTCGAACTCGAGT
Found at i:164767 original size:2 final size:2
Alignment explanation
Indices: 164760--164786 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
164750 ATGAAACATT
164760 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
164787 TAAAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:164821 original size:19 final size:20
Alignment explanation
Indices: 164783--164821 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
164773 ATATATATAT
*
164783 ATATTAAAAATAATTTATAA
1 ATATTAAAAATAATTAATAA
*
164803 ATATT-AAAATTATTAATAA
1 ATATTAAAAATAATTAATAA
164822 TTTAATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATTAAAAATAATTAATAA
Found at i:164845 original size:29 final size:28
Alignment explanation
Indices: 164781--164846 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
164771 ATATATATAT
*
164781 ATATATTAAAAATAATTTATAAATATTA
1 ATATATTAAAAATAATTTATAAAAATTA
* *
164809 AAATTATTAATAATTTAATTTA-AAAAATTA
1 ATA-TATTAA-AA-ATAATTTATAAAAATTA
164839 ATATATTA
1 ATATATTA
164847 TTTTTTTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
28 2 0.06
29 11 0.35
30 11 0.35
31 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
ATATATTAAAAATAATTTATAAAAATTA
Found at i:172782 original size:34 final size:34
Alignment explanation
Indices: 172739--172809 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
172729 AGTATATATA
172739 ATATAGGATAAAGTACATAAATGGTCCCCCAACT
1 ATATAGGATAAAGTACATAAATGGTCCCCCAACT
172773 ATATAGGATAAAGTACATAAATGGTCCCCCAACT
1 ATATAGGATAAAGTACATAAATGGTCCCCCAACT
172807 ATA
1 ATA
172810 GTGCATTGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (34 bp):
ATATAGGATAAAGTACATAAATGGTCCCCCAACT
Found at i:174052 original size:27 final size:27
Alignment explanation
Indices: 174022--174075 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
174012 TGTTCATGCT
174022 GCTCATTGTAGCCTTTAATTTCATACC
1 GCTCATTGTAGCCTTTAATTTCATACC
174049 GCTCATTGTAGCCTTTAATTTCATACC
1 GCTCATTGTAGCCTTTAATTTCATACC
174076 AACTGCTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (27 bp):
GCTCATTGTAGCCTTTAATTTCATACC
Found at i:184901 original size:21 final size:21
Alignment explanation
Indices: 184875--184919 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
184865 GATTTCTGGG
* *
184875 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
184896 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
184917 CAA
1 CAA
184920 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:186015 original size:2 final size:2
Alignment explanation
Indices: 186008--186062 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
185998 AATGATATGA
186008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
186049 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
186063 GTGAAAACAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:186465 original size:22 final size:22
Alignment explanation
Indices: 186433--186535 Score: 188
Period size: 22 Copynumber: 4.6 Consensus size: 22
186423 CATCATATAT
*
186433 GGCACTACGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
186455 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
186477 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
186499 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTAC-G
186522 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
186536 TTTATACGAG
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
22 64 0.81
23 15 0.19
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (22 bp):
GGCACTTCGGTGCAATTCTACG
Found at i:189605 original size:20 final size:21
Alignment explanation
Indices: 189580--189623 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
189570 GATTTCTGGG
* *
189580 CAAGGGGAATCGGTA-CCCTT
1 CAAGGGGAACCGATACCCCTT
189600 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCCTT
189621 CAA
1 CAA
189624 CGAACAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCCTT
Found at i:190216 original size:18 final size:18
Alignment explanation
Indices: 190193--190227 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
190183 ACTAGGAGAT
190193 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
190211 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
190228 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:190707 original size:2 final size:2
Alignment explanation
Indices: 190700--190737 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
190690 AATGATATGA
190700 AT AT AT AT AT AT A- AT AT AT AT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
190738 GTGAAAACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:190717 original size:13 final size:13
Alignment explanation
Indices: 190694--190737 Score: 70
Period size: 13 Copynumber: 3.3 Consensus size: 13
190684 ATAAGAAATG
190694 ATATGAATATATAT
1 ATAT-AATATATAT
190708 ATATAATATATAT
1 ATATAATATATAT
*
190721 ATATTATATATAT
1 ATATAATATATAT
190734 ATAT
1 ATAT
190738 GTGAAAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
13 25 0.86
14 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:190735 original size:11 final size:11
Alignment explanation
Indices: 190703--190735 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
190693 GATATGAATA
*
190703 TATATATATAA
1 TATATATATAT
190714 TATATATATAT
1 TATATATATAT
190725 TATATATATAT
1 TATATATATAT
190736 ATGTGAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TATATATATAT
Found at i:191132 original size:13 final size:13
Alignment explanation
Indices: 191114--191176 Score: 52
Period size: 13 Copynumber: 5.5 Consensus size: 13
191104 TTATATGGCA
191114 CTACGGTGCAATT
1 CTACGGTGCAATT
191127 CTACGG-GC-A--
1 CTACGGTGCAATT
*
191136 CTTCGGTGCAATT
1 CTACGGTGCAATT
191149 CTACGG-GC-A--
1 CTACGGTGCAATT
*
191158 CTTCGGTGCAATT
1 CTACGGTGCAATT
191171 CTACGG
1 CTACGG
191177 GCACTTCGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
9 10 0.26
10 4 0.11
11 4 0.11
12 4 0.11
13 16 0.42
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (13 bp):
CTACGGTGCAATT
Found at i:191218 original size:22 final size:22
Alignment explanation
Indices: 191110--191210 Score: 170
Period size: 22 Copynumber: 4.6 Consensus size: 22
191100 ATCATTATAT
*
191110 GGCACTACGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
191132 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
191154 GGCACTTCGGTGCAATTCTACG
1 GGCACTTCGGTGCAATTCTACG
191176 GGCACTTC-GTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTAC-G
191198 GGCAC-TCGGTGCA
1 GGCACTTCGGTGCA
191211 TTTATACGAG
Statistics
Matches: 76, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
21 14 0.18
22 62 0.82
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (22 bp):
GGCACTTCGGTGCAATTCTACG
Found at i:192479 original size:67 final size:67
Alignment explanation
Indices: 192398--192536 Score: 244
Period size: 67 Copynumber: 2.1 Consensus size: 67
192388 CGCATTTTTG
* *
192398 TATATTTAAGCCTATTTATATTTTTTATCTTTGTAACGTT-AAACACACACTCATATATATATAT
1 TATATTTAAGCCTATTTATA-TTTTTATCTTTGTAACGTTAAAACACACACACACATATATATAT
192462 ATA
65 ATA
192465 TATATTTAAGCCTATTTATATTTTTATCTTTGTAACGTTAAAACACACACACACATATATATATA
1 TATATTTAAGCCTATTTATATTTTTATCTTTGTAACGTTAAAACACACACACACATATATATATA
192530 TA
66 TA
192532 TATAT
1 TATAT
192537 ATATATATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 19 0.28
67 50 0.72
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (67 bp):
TATATTTAAGCCTATTTATATTTTTATCTTTGTAACGTTAAAACACACACACACATATATATATA
TA
Found at i:192524 original size:2 final size:2
Alignment explanation
Indices: 192519--192589 Score: 128
Period size: 2 Copynumber: 36.5 Consensus size: 2
192509 ACACACACAC
192519 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
192559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
192590 GATTTATAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
1 2 0.03
2 65 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:193193 original size:22 final size:23
Alignment explanation
Indices: 193165--193211 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
193155 AACGGAAACA
* *
193165 TGACCAC-ACCGCGATATATCCC
1 TGACCACAACCGCAATAAATCCC
193187 TGACCACAACCGCAATAAATCCC
1 TGACCACAACCGCAATAAATCCC
193210 TG
1 TG
193212 GTACCAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.32, C:0.38, G:0.13, T:0.17
Consensus pattern (23 bp):
TGACCACAACCGCAATAAATCCC
Found at i:194688 original size:47 final size:47
Alignment explanation
Indices: 194619--194713 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
194609 CTGATACTTC
* *
194619 CCTTTTTCTCTTATTTCCCTTTTGGTTTTGGTTGTTGTTGGGATTTT
1 CCTTTTTCACTTATTTCCCTTTTGGTTTTGGTGGTTGTTGGGATTTT
194666 CCTTTTTCACTTATTTCCCTTTTGGTTTTGGTGGTTGTTGGGATTTT
1 CCTTTTTCACTTATTTCCCTTTTGGTTTTGGTGGTTGTTGGGATTTT
194713 C
1 C
194714 TCTGGTTATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.05, C:0.16, G:0.20, T:0.59
Consensus pattern (47 bp):
CCTTTTTCACTTATTTCCCTTTTGGTTTTGGTGGTTGTTGGGATTTT
Found at i:201644 original size:33 final size:33
Alignment explanation
Indices: 201602--201672 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
201592 AAAGTAGTGT
*
201602 AAAATCAATTAAAAACCAAATCAGTTTTGAAGG
1 AAAATCAATTAAAAACCAAATCAGTTTTAAAGG
201635 AAAATCAATTAAAAACCAAATCAGTTTTAAAGG
1 AAAATCAATTAAAAACCAAATCAGTTTTAAAGG
201668 AAAAT
1 AAAAT
201673 TATGCATTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.24
Consensus pattern (33 bp):
AAAATCAATTAAAAACCAAATCAGTTTTAAAGG
Found at i:204219 original size:25 final size:24
Alignment explanation
Indices: 204191--204255 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 24
204181 GAGTGGATTC
*
204191 TTTATGCGTTATAATACAACTGCTT
1 TTTATGCGTTATAATACAACT-ATT
* * *
204216 TTTATACGTTATGATATAACTATT
1 TTTATGCGTTATAATACAACTATT
204240 TTCTATGCGTTATAAT
1 TT-TATGCGTTATAAT
204256 TTGATTAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 4 0.12
25 29 0.88
ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48
Consensus pattern (24 bp):
TTTATGCGTTATAATACAACTATT
Found at i:217323 original size:6 final size:6
Alignment explanation
Indices: 217312--217338 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
217302 AATTAAGTCT
217312 GAGAAA GAGAAA GAGAAA GAGAAA GAG
1 GAGAAA GAGAAA GAGAAA GAGAAA GAG
217339 TTTTTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (6 bp):
GAGAAA
Found at i:227431 original size:35 final size:34
Alignment explanation
Indices: 227346--227432 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 34
227336 AAAATAATTT
*
227346 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGG
* *
227380 TAAATGATAACCAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAA--G-TATTAAATGG
227418 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
227433 ACTGAAAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.53
36 1 0.02
37 4 0.09
38 11 0.24
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGG
Done.