Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008174.1 Hibiscus syriacus cultivar Beakdansim tig00110769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  210847

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8665--8778
35
3.3
35
83
0
138
42
19
0
37
1.57
11163--11204
22
1.9
22
95
0
75
69
7
9
14
1.37
12195--12250
26
2.2
25
83
3
67
39
3
3
53
1.36
12424--12479
23
2.3
23
79
11
60
26
3
12
57
1.52
29550--29608
28
2.1
28
100
0
118
35
8
25
30
1.86
33236--33265
6
5.0
6
100
0
60
66
0
0
33
0.92
48411--48486
37
2.1
37
100
0
152
36
9
13
40
1.76
50383--50460
23
3.6
22
81
10
90
39
2
0
57
1.12
50383--50460
11
7.3
11
70
12
56
39
2
0
57
1.12
64605--64631
5
5.4
5
100
0
54
22
0
40
37
1.54
66202--66290
34
2.6
34
89
3
126
26
21
14
37
1.92
82353--82392
2
20.0
2
100
0
80
50
0
0
50
1.00
83949--83976
7
4.0
7
100
0
56
28
14
28
28
1.95
91246--91279
12
2.9
12
86
4
52
26
0
0
73
0.83
96208--97609
84
17.1
83
78
7
1263
30
25
19
24
1.98
96208--97624
165
8.6
164
86
3
1877
30
25
19
24
1.98
96208--97624
330
4.3
330
90
2
2077
30
25
19
24
1.98
98017--98060
2
22.0
2
100
0
88
50
0
0
50
1.00
100917--100946
2
15.0
2
100
0
60
50
0
0
50
1.00
102190--102252
26
2.4
26
84
10
76
58
19
20
1
1.47
107246--107627
188
2.0
189
97
1
732
21
11
19
46
1.82
114435--114473
19
2.0
20
85
5
53
48
7
17
25
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115804--115846
15
3.0
14
80
12
52
62
0
0
37
0.95
116177--116202
8
3.2
8
100
0
52
34
0
15
50
1.45
117526--117568
18
2.3
19
80
8
52
51
0
6
41
1.29
122838--123006
75
2.3
75
78
11
186
40
3
7
47
1.49
122875--123010
37
3.6
37
75
8
125
42
2
6
47
1.44
127784--127811
12
2.3
12
100
0
56
25
17
25
32
1.97
133527--133565
19
2.1
19
85
4
53
71
0
5
23
1.05
137856--137902
21
2.3
21
85
3
60
55
14
0
29
1.40
143746--143799
24
2.2
24
96
0
99
42
20
18
18
1.89
150024--150147
50
2.5
49
78
10
133
16
32
29
22
1.95
154375--154414
18
2.2
18
95
0
71
20
20
32
27
1.97
155921--156253
111
3.0
111
97
0
621
44
11
8
36
1.70
156657--156742
35
2.5
35
84
0
100
40
20
1
37
1.61
156711--156753
21
2.0
21
100
0
86
46
13
0
39
1.44
156874--156907
16
2.0
18
88
11
54
26
2
5
64
1.30
157533--157592
23
2.7
23
94
2
104
28
23
20
28
1.99
157964--158716
376
2.0
376
98
0
1461
35
9
18
35
1.84
160847--160949
51
2.0
52
88
1
154
32
15
20
32
1.94
171224--171296
33
2.2
34
85
7
96
24
17
12
45
1.83
186776--186867
20
5.0
20
68
20
74
44
16
5
33
1.70
186769--186883
52
2.2
51
95
1
203
50
15
4
29
1.63
193123--193154
17
1.9
16
93
6
55
0
59
31
9
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193124--193171
20
2.4
20
82
0
60
2
58
29
10
1.43
207008--207094
29
3.0
29
100
0
174
37
13
13
34
1.85

Tables:   1

The End!