genome.fa.s8176.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008176.1 Hibiscus syriacus cultivar Beakdansim tig00110772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81795

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20948--20981	12	2.8	12	90	4	50	58	26	2	11	1.47
21454--21511	20	2.9	20	68	0	53	34	29	12	24	1.91
23369--23503	24	5.6	24	82	7	103	40	20	13	25	1.89
23386--23503	48	2.4	48	84	4	157	39	20	15	24	1.91
23362--23517	48	3.2	48	78	7	129	43	19	12	23	1.86
26044--26089	13	3.5	13	87	0	65	17	19	41	21	1.90
26053--26125	31	2.4	31	88	0	110	17	19	43	19	1.88
27997--28037	2	20.5	2	100	0	82	51	0	0	48	1.00
28238--28355	24	4.9	24	88	5	139	39	19	16	24	1.91
28238--28352	48	2.4	48	89	2	169	40	19	16	24	1.91
28269--28369	48	2.1	48	85	7	134	42	19	15	21	1.89
29031--29090	30	2.0	30	93	6	104	33	6	16	43	1.74
29180--29257	20	4.1	20	78	18	94	23	35	28	12	1.91
29206--29235	15	2.0	15	100	0	60	26	33	26	13	1.93
29180--29257	21	4.0	21	78	20	89	23	35	28	12	1.91
29291--29335	22	2.0	22	100	0	90	13	46	26	13	1.80
29371--29413	21	2.0	21	95	0	77	23	20	27	27	1.99
29441--29480	20	1.9	22	90	10	66	37	40	10	12	1.77
29697--29766	34	2.1	32	89	5	104	31	15	31	21	1.95
31246--31283	20	2.0	20	89	5	60	47	5	13	34	1.65
32561--32620	29	2.0	31	90	6	97	35	6	16	41	1.75
32710--32785	21	4.0	21	78	18	85	25	35	26	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32728--32785	15	3.2	19	75	25	70	25	39	24	10	1.87
32717--32785	36	1.9	35	91	2	111	26	34	24	14	1.94
32821--32863	21	2.0	21	100	0	86	13	44	27	13	1.83
32899--32941	21	2.0	21	95	0	77	23	20	27	27	1.99
33225--33294	34	2.1	32	89	5	104	31	15	31	21	1.95
41342--41420	33	2.4	33	95	0	140	21	12	24	41	1.87
41342--41436	33	3.0	32	87	4	113	21	12	24	42	1.87
47831--49726	944	2.0	944	98	0	3677	31	15	19	33	1.93
54787--54819	16	2.1	16	94	0	57	33	6	27	33	1.81
60269--61027	382	2.0	382	98	0	1466	37	28	11	21	1.89
67800--67833	12	2.8	12	90	4	50	58	26	2	11	1.47
68303--68360	20	2.9	20	68	0	53	34	29	12	24	1.91
68521--68557	19	2.0	18	89	5	56	35	8	21	35	1.83
70220--70336	24	4.9	24	86	8	132	40	20	15	23	1.91
70220--70333	48	2.4	48	88	4	160	40	20	15	23	1.91
70251--70333	12	7.1	11	70	22	62	40	20	15	22	1.90
72814--72858	13	3.5	13	90	0	72	15	22	44	17	1.86
72836--72882	18	2.6	18	89	0	76	14	19	48	17	1.81
72814--72875	13	4.4	13	75	18	52	16	19	46	17	1.84
73985--74051	35	1.9	35	96	0	125	32	28	29	8	1.88
74138--74227	24	3.8	24	86	2	137	40	18	16	24	1.91

Tables:   1

The End!