Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008178.1 Hibiscus syriacus cultivar Beakdansim tig00110775_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 287176
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:280590 original size:19 final size:20

Alignment explanation


    Indices: 280568--280611  Score: 63
    Period size: 20  Copynumber: 2.2  Consensus size: 20

     280558 GAGAAAAGGT

                                
     280568 AAAAGTTAA-AATGAAAGAG
          1 AAAAGTTAATAATGAAAGAG

                *              *
     280587 AAAAATTAATAATGAAAGAT
          1 AAAAGTTAATAATGAAAGAG

                 
     280607 AAAAG
          1 AAAAG

     280612 AAAAAGTTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  19    8  0.38
  20   13  0.62

ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18


Consensus pattern (20 bp):   
AAAAGTTAATAATGAAAGAG

Found at i:286953 original size:17 final size:16

Alignment explanation


    Indices: 286931--286964  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

     286921 TAAAAACAGT

                             
     286931 AAATAAAAAGATAAATA
          1 AAATAAAAAGA-AAATA

                  *         
     286948 AAATAAGAAGAAAATA
          1 AAATAAAAAGAAAATA

             
     286964 A
          1 A

     286965 TCCTCACGTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15


Consensus pattern (16 bp):   
AAATAAAAAGAAAATA

Done.