Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008179.1 Hibiscus syriacus cultivar Beakdansim tig00110776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 726026
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
File 2 of 3
Found at i:248973 original size:34 final size:33
Alignment explanation
Indices: 248868--248973 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
248858 ATAAATGTTT
*
248868 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
248902 TAAAAATAAAAATAATATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
248934 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
248969 TTAAA
1 TTAAA
248974 TTTCAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:249577 original size:126 final size:126
Alignment explanation
Indices: 249350--249830 Score: 908
Period size: 126 Copynumber: 3.8 Consensus size: 126
249340 TTTAAGTTAT
249350 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACGAAATAATGGAAG
1 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGAT-A-ATATTCTCTGACGAAATAATGGAAG
*
249415 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATATGTACTGATATATCTAGTG
64 GCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
249478 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
249543 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
249604 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATAGAAGGC
1 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
*
249669 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGACATAATAGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
249730 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
249795 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
249831 CCGATTATAG
Statistics
Matches: 347, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
126 309 0.89
127 1 0.00
128 37 0.11
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (126 bp):
TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
GCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
Found at i:249911 original size:8 final size:8
Alignment explanation
Indices: 249898--249938 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
249888 TCACAATCTT
249898 TCAAATTC
1 TCAAATTC
249906 TCAAATTC
1 TCAAATTC
* *
249914 CCAAACTC
1 TCAAATTC
249922 T-AAATTC
1 TCAAATTC
249929 TCAAATTC
1 TCAAATTC
249937 TC
1 TC
249939 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:252963 original size:12 final size:13
Alignment explanation
Indices: 252930--252967 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
252920 AAATACATAA
252930 ATATATTTAATAT
1 ATATATTTAATAT
*
252943 ATTTATTTAATAT
1 ATATATTTAATAT
252956 A-ATATTTAATAT
1 ATATATTTAATAT
252968 TATTAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATATTTAATAT
Found at i:255297 original size:26 final size:28
Alignment explanation
Indices: 255239--255300 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
255229 CTCTCCAACC
*
255239 AAAATAGAAAAATATCATTATCTTCAATC
1 AAAATA-AAAAATATCATTATCTTCAATA
*
255268 AAAATAAAAAATATCATTCTCTT-AA-A
1 AAAATAAAAAATATCATTATCTTCAATA
255294 AAAATAA
1 AAAATAA
255301 TATTAACATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.23
27 2 0.06
28 16 0.52
29 6 0.19
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAATAAAAAATATCATTATCTTCAATA
Found at i:263836 original size:18 final size:17
Alignment explanation
Indices: 263815--263854 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
263805 GATATCAATA
263815 TAAAATATAAAAAATATT
1 TAAAATATAAAAAA-ATT
* *
263833 TAAAATATATAATAATT
1 TAAAATATAAAAAAATT
263850 TAAAA
1 TAAAA
263855 AATTTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAATATAAAAAAATT
Found at i:263865 original size:28 final size:27
Alignment explanation
Indices: 263812--263865 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
263802 TATGATATCA
*
263812 ATATAAAATATAAAAAATATTTAAAAT
1 ATATAAAATATAAAAAATATTGAAAAT
*
263839 ATATAATAATTTAAAAAAT-TTAGAAAA
1 ATATAA-AATATAAAAAATATT-GAAAA
263866 ATAACTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (27 bp):
ATATAAAATATAAAAAATATTGAAAAT
Found at i:264572 original size:100 final size:96
Alignment explanation
Indices: 264413--264599 Score: 259
Period size: 100 Copynumber: 1.9 Consensus size: 96
264403 ACAGAATAAT
*
264413 CTATTAGTAAAAATGGTTTGTCCAAAGTTCGATTTAGTCTATCAAAGTCAAAACTCTATTATTTT
1 CTATTAGTAAAAATGGTTTGTCCAAAGTTCGATTTAGTCTATCAAAGTCAAAAATCTATTA--TT
*
264478 TTTTATTAATATGGGATAGATACACAAACTAAC
64 TTTTATTAATATAGGATAGATACACAAACTAAC
* * * *
264511 CTATTAGTAGAAAGATGGTTTGTCGAAGGTTCGATTTGGT-TCATCAAATTCAAAAATCTATTAT
1 CTATTAGTA-AAA-ATGGTTTGTCCAAAGTTCGATTTAGTCT-ATCAAAGTCAAAAATCTATTAT
*
264575 TTTTTATTAATCTAGGATAGATACA
63 TTTTTATTAATATAGGATAGATACA
264600 AGATAGATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
98 33 0.42
99 4 0.05
100 42 0.53
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (96 bp):
CTATTAGTAAAAATGGTTTGTCCAAAGTTCGATTTAGTCTATCAAAGTCAAAAATCTATTATTTT
TTATTAATATAGGATAGATACACAAACTAAC
Found at i:267778 original size:2 final size:2
Alignment explanation
Indices: 267771--267795 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
267761 TAAGTTCTTG
267771 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
267796 AAAAGATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:267901 original size:100 final size:100
Alignment explanation
Indices: 267780--267962 Score: 357
Period size: 100 Copynumber: 1.8 Consensus size: 100
267770 GATATATATA
267780 TATATATATATATATAAAAAGATTGTTAATACTTTATGTTGTTGTTGAAAACATTTTGATATTTC
1 TATATATATATATATAAAAAGATTGTTAATACTTTATGTTGTTGTTGAAAACATTTTGATATTTC
267845 GATATAACAAATTAAGATTGTTAACAATCTTTATT
66 GATATAACAAATTAAGATTGTTAACAATCTTTATT
*
267880 TATATATATATATATATAAAGATTGTTAATACTTTATGTTGTTGTTGAAAACATTTTGATATTTC
1 TATATATATATATATAAAAAGATTGTTAATACTTTATGTTGTTGTTGAAAACATTTTGATATTTC
267945 GATATAACAAATTAAGAT
66 GATATAACAAATTAAGAT
267963 AAATGAATTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.45
Consensus pattern (100 bp):
TATATATATATATATAAAAAGATTGTTAATACTTTATGTTGTTGTTGAAAACATTTTGATATTTC
GATATAACAAATTAAGATTGTTAACAATCTTTATT
Found at i:271983 original size:31 final size:31
Alignment explanation
Indices: 271947--272018 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
271937 ACCGGTCACA
271947 ACCCGACCCGACCCGTTGACCCGAACCGTTG
1 ACCCGACCCGACCCGTTGACCCGAACCGTTG
*
271978 ACCCGACCCGACCCGTTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGAACCGTTG
272009 ACCCGACCCG
1 ACCCGACCCG
272019 TTGACCGTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.18, C:0.49, G:0.22, T:0.11
Consensus pattern (31 bp):
ACCCGACCCGACCCGTTGACCCGAACCGTTG
Found at i:272000 original size:8 final size:8
Alignment explanation
Indices: 271987--272046 Score: 64
Period size: 8 Copynumber: 8.5 Consensus size: 8
271977 GACCCGACCC
271987 GACCCGTT
1 GACCCGTT
271995 GACCC---
1 GACCCGTT
272000 GACCCGTT
1 GACCCGTT
272008 GACCC---
1 GACCCGTT
272013 GACCCGTT
1 GACCCGTT
272021 GA-CCGTT
1 GACCCGTT
272028 GACCCGTT
1 GACCCGTT
272036 GA-CCGTT
1 GACCCGTT
272043 GACC
1 GACC
272047 GGAATTGACC
Statistics
Matches: 44, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
5 10 0.23
7 14 0.32
8 20 0.45
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (8 bp):
GACCCGTT
Found at i:272018 original size:18 final size:18
Alignment explanation
Indices: 271947--272005 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
271937 ACCGGTCACA
271947 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
271965 ACCCGA----A-CCGTTG
1 ACCCGACCCGACCCGTTG
271978 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
271996 ACCCGACCCG
1 ACCCGACCCG
272006 TTGACCCGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.33
14 1 0.03
17 1 0.03
18 22 0.61
ACGTcount: A:0.19, C:0.49, G:0.22, T:0.10
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:272028 original size:7 final size:7
Alignment explanation
Indices: 272016--272047 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
272006 TTGACCCGAC
272016 CCGTTGA
1 CCGTTGA
272023 CCGTTGA
1 CCGTTGA
272030 CCCGTTGA
1 -CCGTTGA
272038 CCGTTGA
1 CCGTTGA
272045 CCG
1 CCG
272048 GAATTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.25
Consensus pattern (7 bp):
CCGTTGA
Found at i:272046 original size:15 final size:13
Alignment explanation
Indices: 271951--272039 Score: 97
Period size: 13 Copynumber: 6.3 Consensus size: 13
271941 GTCACAACCC
271951 GACCCGACCCGTT
1 GACCCGACCCGTT
*
271964 GACCCGAACCGTT
1 GACCCGACCCGTT
271977 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
271995 GACCCGACCCGTT
1 GACCCGACCCGTT
272008 GACCCGACCCGTT
1 GACCCGACCCGTT
*
272021 GACCGTTGACCCGTT
1 GACC--CGACCCGTT
272036 GACC
1 GACC
272040 GTTGACCGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
13 42 0.64
15 12 0.18
18 12 0.18
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:273064 original size:63 final size:63
Alignment explanation
Indices: 272965--273087 Score: 246
Period size: 63 Copynumber: 2.0 Consensus size: 63
272955 TAATCCTAGG
272965 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
273028 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
273088 TAAGAAAGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (63 bp):
AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
Found at i:273091 original size:31 final size:31
Alignment explanation
Indices: 272993--273092 Score: 77
Period size: 31 Copynumber: 3.2 Consensus size: 31
272983 TAGAAGTCTG
272993 TTAAGAGAACCGTTTCAAGATCAGAGAGTG-
1 TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
* *
273023 TT-AGA-AGA--GTTTGTGAAGGATACTAGA-AGTCT
1 TTAAGAGA-ACCG-TT-TCAA-GAT-C-AGAGAGTGT
273055 GTTAAGAGAACCGTTTCAAGATCAGAGAGTGT
1 -TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
273087 TTAAGA
1 TTAAGA
273093 AAGCAATTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 25
0.65 0.05 0.30
Matches are distributed among these distances:
27 1 0.02
28 3 0.06
29 7 0.13
30 5 0.09
31 13 0.25
32 8 0.15
33 5 0.09
34 7 0.13
35 3 0.06
36 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (31 bp):
TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
Found at i:274666 original size:24 final size:24
Alignment explanation
Indices: 274639--274733 Score: 118
Period size: 24 Copynumber: 4.0 Consensus size: 24
274629 ATTTCCGACT
** *
274639 TGAATTCTGTTCTGATAAATGACC
1 TGAATTCTGTTCTGATATCTGATC
*
274663 TGAATTCTGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATATCTGATC
* *
274687 TGGATTCTGTTCTGATATCTGTTC
1 TGAATTCTGTTCTGATATCTGATC
* *
274711 TGAATTCTGTTTTGATTTCTGAT
1 TGAATTCTGTTCTGATATCTGAT
274734 ATCTTCGTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.19, C:0.15, G:0.18, T:0.48
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATCTGATC
Found at i:274677 original size:12 final size:12
Alignment explanation
Indices: 274662--274731 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
274652 GATAAATGAC
274662 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
274674 CTGATTTCTGAT
1 CTGAATTCTGTT
*
274686 CTGGATTCTGTT
1 CTGAATTCTGTT
274698 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
274710 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
274722 TTGATTTCTG
1 CTGAATTCTG
274732 ATATCTTCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
11 2 0.04
12 45 0.92
13 2 0.04
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:274730 original size:48 final size:48
Alignment explanation
Indices: 274625--274733 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
274615 AAATATTTTA
* *
274625 TCTGATTTCCGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGGATTCTGTTCTGATAAATGACCTGAATTCTGT
** **
274673 TCTGATTTCTGATCTGGATTCTGTTCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGGATTCTGTTCTGATAAATGACCTGAATTCTGT
*
274721 TTTGATTTCTGAT
1 TCTGATTTCTGAT
274734 ATCTTCGTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (48 bp):
TCTGATTTCTGATCTGGATTCTGTTCTGATAAATGACCTGAATTCTGT
Found at i:276832 original size:31 final size:31
Alignment explanation
Indices: 276796--276867 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
276786 ACCGGTCACA
276796 ACCCGACCCGACCCGTTGACCCGAACCGTTG
1 ACCCGACCCGACCCGTTGACCCGAACCGTTG
*
276827 ACCCGACCCGACCCGTTGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTGACCCGAACCGTTG
276858 ACCCGACCCG
1 ACCCGACCCG
276868 TTGACCGTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.18, C:0.49, G:0.22, T:0.11
Consensus pattern (31 bp):
ACCCGACCCGACCCGTTGACCCGAACCGTTG
Found at i:276849 original size:8 final size:8
Alignment explanation
Indices: 276836--276895 Score: 64
Period size: 8 Copynumber: 8.5 Consensus size: 8
276826 GACCCGACCC
276836 GACCCGTT
1 GACCCGTT
276844 GACCC---
1 GACCCGTT
276849 GACCCGTT
1 GACCCGTT
276857 GACCC---
1 GACCCGTT
276862 GACCCGTT
1 GACCCGTT
276870 GA-CCGTT
1 GACCCGTT
276877 GACCCGTT
1 GACCCGTT
276885 GA-CCGTT
1 GACCCGTT
276892 GACC
1 GACC
276896 GGAATTGACC
Statistics
Matches: 44, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
5 10 0.23
7 14 0.32
8 20 0.45
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (8 bp):
GACCCGTT
Found at i:276867 original size:18 final size:18
Alignment explanation
Indices: 276796--276854 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
276786 ACCGGTCACA
276796 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
276814 ACCCGA----A-CCGTTG
1 ACCCGACCCGACCCGTTG
276827 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
276845 ACCCGACCCG
1 ACCCGACCCG
276855 TTGACCCGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.33
14 1 0.03
17 1 0.03
18 22 0.61
ACGTcount: A:0.19, C:0.49, G:0.22, T:0.10
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:276877 original size:7 final size:7
Alignment explanation
Indices: 276865--276896 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
276855 TTGACCCGAC
276865 CCGTTGA
1 CCGTTGA
276872 CCGTTGA
1 CCGTTGA
276879 CCCGTTGA
1 -CCGTTGA
276887 CCGTTGA
1 CCGTTGA
276894 CCG
1 CCG
276897 GAATTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.25
Consensus pattern (7 bp):
CCGTTGA
Found at i:276895 original size:15 final size:13
Alignment explanation
Indices: 276800--276888 Score: 97
Period size: 13 Copynumber: 6.3 Consensus size: 13
276790 GTCACAACCC
276800 GACCCGACCCGTT
1 GACCCGACCCGTT
*
276813 GACCCGAACCGTT
1 GACCCGACCCGTT
276826 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
276844 GACCCGACCCGTT
1 GACCCGACCCGTT
276857 GACCCGACCCGTT
1 GACCCGACCCGTT
*
276870 GACCGTTGACCCGTT
1 GACC--CGACCCGTT
276885 GACC
1 GACC
276889 GTTGACCGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
13 42 0.64
15 12 0.18
18 12 0.18
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:277912 original size:63 final size:63
Alignment explanation
Indices: 277813--277935 Score: 246
Period size: 63 Copynumber: 2.0 Consensus size: 63
277803 TAATCCTAGG
277813 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
277876 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
1 AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTT
277936 TAAGAAAGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (63 bp):
AGAGTTTGTGAAGGATACTAGAAGTCTGTTAAGAGAACCGTTTCAAGATCAGAGAGTGTTAGA
Found at i:277939 original size:31 final size:31
Alignment explanation
Indices: 277841--277940 Score: 77
Period size: 31 Copynumber: 3.2 Consensus size: 31
277831 TAGAAGTCTG
277841 TTAAGAGAACCGTTTCAAGATCAGAGAGTG-
1 TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
* *
277871 TT-AGA-AGA--GTTTGTGAAGGATACTAGA-AGTCT
1 TTAAGAGA-ACCG-TT-TCAA-GAT-C-AGAGAGTGT
277903 GTTAAGAGAACCGTTTCAAGATCAGAGAGTGT
1 -TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
277935 TTAAGA
1 TTAAGA
277941 AAGCAATTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 25
0.65 0.05 0.30
Matches are distributed among these distances:
27 1 0.02
28 3 0.06
29 7 0.13
30 5 0.09
31 13 0.25
32 8 0.15
33 5 0.09
34 7 0.13
35 3 0.06
36 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (31 bp):
TTAAGAGAACCGTTTCAAGATCAGAGAGTGT
Found at i:279516 original size:24 final size:24
Alignment explanation
Indices: 279489--279583 Score: 118
Period size: 24 Copynumber: 4.0 Consensus size: 24
279479 ATTTCCGACT
** *
279489 TGAATTCTGTTCTGATAAATGACC
1 TGAATTCTGTTCTGATATCTGATC
*
279513 TGAATTCTGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATATCTGATC
* *
279537 TGGATTCTGTTCTGATATCTGTTC
1 TGAATTCTGTTCTGATATCTGATC
* *
279561 TGAATTCTGTTTTGATTTCTGAT
1 TGAATTCTGTTCTGATATCTGAT
279584 ATCTTCGTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.19, C:0.15, G:0.18, T:0.48
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATCTGATC
Found at i:279527 original size:12 final size:12
Alignment explanation
Indices: 279512--279581 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
279502 GATAAATGAC
279512 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
279524 CTGATTTCTGAT
1 CTGAATTCTGTT
*
279536 CTGGATTCTGTT
1 CTGAATTCTGTT
279548 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
279560 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
279572 TTGATTTCTG
1 CTGAATTCTG
279582 ATATCTTCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
11 2 0.04
12 45 0.92
13 2 0.04
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:279580 original size:48 final size:48
Alignment explanation
Indices: 279475--279583 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
279465 AAATATTTTA
* *
279475 TCTGATTTCCGA-CTTGAATTCTGTTCTGATAAATGACCTGAATTCTGT
1 TCTGATTTCTGATC-TGGATTCTGTTCTGATAAATGACCTGAATTCTGT
** **
279523 TCTGATTTCTGATCTGGATTCTGTTCTGATATCTGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGGATTCTGTTCTGATAAATGACCTGAATTCTGT
*
279571 TTTGATTTCTGAT
1 TCTGATTTCTGAT
279584 ATCTTCGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (48 bp):
TCTGATTTCTGATCTGGATTCTGTTCTGATAAATGACCTGAATTCTGT
Found at i:283228 original size:22 final size:22
Alignment explanation
Indices: 283203--283294 Score: 87
Period size: 22 Copynumber: 4.2 Consensus size: 22
283193 GAATCAATAT
*
283203 CCCCTTGAAGGGGAACCGATTC
1 CCCCTTGAAGGGGAACCGATAC
** *
283225 CCCCTTTGAAGATGAACCGATTC
1 CCCC-TTGAAGGGGAACCGATAC
* *
283248 CCCC-TGTAGGGGAATCGATAC
1 CCCCTTGAAGGGGAACCGATAC
* * *
283269 CCCCCTGCAGGGGAATCGATAC
1 CCCCTTGAAGGGGAACCGATAC
283291 CCCC
1 CCCC
283295 CTGGGATTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 16 0.27
22 24 0.40
23 20 0.33
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.18
Consensus pattern (22 bp):
CCCCTTGAAGGGGAACCGATAC
Found at i:283295 original size:22 final size:22
Alignment explanation
Indices: 283247--283297 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
283237 TGAACCGATT
*
283247 CCCCCTGTAGGGGAATCGATAC
1 CCCCCTGCAGGGGAATCGATAC
283269 CCCCCTGCAGGGGAATCGATAC
1 CCCCCTGCAGGGGAATCGATAC
283291 CCCCCTG
1 CCCCCTG
283298 GGATTCTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.39, G:0.25, T:0.16
Consensus pattern (22 bp):
CCCCCTGCAGGGGAATCGATAC
Found at i:284899 original size:18 final size:18
Alignment explanation
Indices: 284864--284902 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
284854 GGAGCAGCAC
*
284864 GAGGAACAAGCACCTCCA
1 GAGGAACAACCACCTCCA
* *
284882 GAGGAACAACCTCGTCCA
1 GAGGAACAACCACCTCCA
284900 GAG
1 GAG
284903 TATCAAATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.26, T:0.08
Consensus pattern (18 bp):
GAGGAACAACCACCTCCA
Found at i:285187 original size:17 final size:16
Alignment explanation
Indices: 285158--285223 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
285148 TTGTTTTAAC
*
285158 ATTTTGGAATGTTTGA
1 ATTTTGGATTGTTTGA
285174 ATTTGTGGATTGTTTG-
1 ATTT-TGGATTGTTTGA
* *
285190 ACTTTGAATTTGTTTGA
1 ATTTTGGA-TTGTTTGA
285207 ATTTATGGA-TGTTTGA
1 ATTT-TGGATTGTTTGA
285223 A
1 A
285224 CTTATATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 3 0.07
16 22 0.54
17 13 0.32
18 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.24, T:0.52
Consensus pattern (16 bp):
ATTTTGGATTGTTTGA
Found at i:285527 original size:42 final size:42
Alignment explanation
Indices: 285475--285559 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
285465 AGGGGGAGAA
*
285475 ATGTTAAAGTGTTTAAATGGGAGAAGTGTTAGAGTAAGGGGG
1 ATGTTAAAGTGTTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
285517 ATGTTAAAGTGTTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
1 ATGTTAAAGTGTTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
285559 A
1 A
285560 GTAATTTCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.34, C:0.00, G:0.39, T:0.27
Consensus pattern (42 bp):
ATGTTAAAGTGTTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
Found at i:285558 original size:21 final size:21
Alignment explanation
Indices: 285493--285560 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
285483 GTGTTTAAAT
285493 GGGAGAAGTGTTAGAGTAAGG
1 GGGAGAAGTGTTAGAGTAAGG
*
285514 GGGATGTTAAAGTGTT----TAAAG
1 GGGA-G---AAGTGTTAGAGTAAGG
285535 GGGAGAAGTGTTAGAGTAAGG
1 GGGAGAAGTGTTAGAGTAAGG
285556 GGGAG
1 GGGAG
285561 TAATTTCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 7 0.19
20 1 0.03
21 21 0.57
22 1 0.03
25 7 0.19
ACGTcount: A:0.32, C:0.00, G:0.46, T:0.22
Consensus pattern (21 bp):
GGGAGAAGTGTTAGAGTAAGG
Found at i:294258 original size:19 final size:19
Alignment explanation
Indices: 294223--294259 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
294213 ATGACCAACA
*
294223 AAATCGCAATGCAATCTCT
1 AAATCGCAACGCAATCTCT
*
294242 AAATCGCAACGCGATCTC
1 AAATCGCAACGCAATCTC
294260 CATTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCAATCTCT
Found at i:294350 original size:21 final size:21
Alignment explanation
Indices: 294304--294357 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
294294 GATTTTGACT
*
294304 ATCGCATTGCGATTTTCCAAA
1 ATCGCATTGCGATTTTACAAA
* * *
294325 TTCGCGTTGCGATTTTAGAAA
1 ATCGCATTGCGATTTTACAAA
*
294346 ATCGCAATGCGA
1 ATCGCATTGCGA
294358 ATATGTAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (21 bp):
ATCGCATTGCGATTTTACAAA
Found at i:294413 original size:20 final size:20
Alignment explanation
Indices: 294366--294452 Score: 140
Period size: 20 Copynumber: 4.4 Consensus size: 20
294356 GAATATGTAA
294366 ATCGCAACGCGATTCTGAC-
1 ATCGCAACGCGATTCTGACT
* *
294385 ATCGCAACGTGATTTTGACT
1 ATCGCAACGCGATTCTGACT
*
294405 ATTGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
294425 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
294445 ATCGCAAC
1 ATCGCAAC
294453 ACTGAATTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
19 17 0.28
20 44 0.72
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:295283 original size:22 final size:22
Alignment explanation
Indices: 295256--295297 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
295246 AGATAGACGG
295256 ATTTCGCCGGAGATGGGGACAT
1 ATTTCGCCGGAGATGGGGACAT
*
295278 ATTTCGTCGGAGATGGGGAC
1 ATTTCGCCGGAGATGGGGAC
295298 GGATGTCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.17, G:0.38, T:0.24
Consensus pattern (22 bp):
ATTTCGCCGGAGATGGGGACAT
Found at i:295537 original size:20 final size:19
Alignment explanation
Indices: 295514--295559 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
295504 GGAAACTGAT
* *
295514 TTGCGATAATGGAGATCGCG
1 TTGCGAT-ATAGAGATCGCA
*
295534 TTGCGATTTAGAGATCGCA
1 TTGCGATATAGAGATCGCA
295553 TTGCGAT
1 TTGCGAT
295560 TTCGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (19 bp):
TTGCGATATAGAGATCGCA
Found at i:295549 original size:19 final size:19
Alignment explanation
Indices: 295525--295561 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
295515 TGCGATAATG
*
295525 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
295544 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
295562 CGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:296673 original size:28 final size:28
Alignment explanation
Indices: 296648--296704 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
296638 TGAAAATTGT
*
296648 TTTCACCCTATAAAATTTTATGAATTTG
1 TTTCACCCCATAAAATTTTATGAATTTG
296676 TTTCACCCCATAAAATTTTATGAATTTG
1 TTTCACCCCATAAAATTTTATGAATTTG
296704 T
1 T
296705 CATCCTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.46
Consensus pattern (28 bp):
TTTCACCCCATAAAATTTTATGAATTTG
Found at i:296917 original size:15 final size:15
Alignment explanation
Indices: 296897--296926 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
296887 AAAAATAGAT
296897 TTAACTATACAAGAC
1 TTAACTATACAAGAC
*
296912 TTAACTATACGAGAC
1 TTAACTATACAAGAC
296927 CGTCAACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTATACAAGAC
Found at i:300073 original size:19 final size:19
Alignment explanation
Indices: 300019--300076 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 19
300009 CCGGCCGATT
*
300019 ACCACCGGTCACTATTCCG
1 ACCATCGGTCACTATTCCG
300038 ACCATCGTCGATCACTATTCCG
1 ACCATCG--G-TCACTATTCCG
*
300060 GCCATCGGTCACTATTC
1 ACCATCGGTCACTATTC
300077 ACAGTGGCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 15 0.44
20 1 0.03
21 1 0.03
22 17 0.50
ACGTcount: A:0.21, C:0.38, G:0.16, T:0.26
Consensus pattern (19 bp):
ACCATCGGTCACTATTCCG
Found at i:300506 original size:23 final size:23
Alignment explanation
Indices: 300475--300574 Score: 173
Period size: 23 Copynumber: 4.3 Consensus size: 23
300465 GGGAACATGA
*
300475 CGGCGGAGCAGTTGAAGTAGAGG
1 CGGCGGAGCAGTTGGAGTAGAGG
*
300498 TGGCGGAGCAGTTGGAGTAGAGG
1 CGGCGGAGCAGTTGGAGTAGAGG
*
300521 CGGTGGAGCAGTTGGAGTAGAGG
1 CGGCGGAGCAGTTGGAGTAGAGG
300544 CGGCGGAGCAGTTGGAGTAGAGG
1 CGGCGGAGCAGTTGGAGTAGAGG
300567 CGGCGGAG
1 CGGCGGAG
300575 AAGATGCTAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 72 1.00
ACGTcount: A:0.22, C:0.12, G:0.52, T:0.14
Consensus pattern (23 bp):
CGGCGGAGCAGTTGGAGTAGAGG
Found at i:300640 original size:21 final size:21
Alignment explanation
Indices: 300607--300668 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
300597 GGTGTTGGGT
300607 CGGG-TCTAGATCTGGGCCTC
1 CGGGTTCTAGATCTGGGCCTC
* *
300627 CGGGTTCTGGATCTGGGCCTT
1 CGGGTTCTAGATCTGGGCCTC
300648 CGGGTTCTAGATCTGGGCCTC
1 CGGGTTCTAGATCTGGGCCTC
300669 ATTTTTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.08, C:0.27, G:0.35, T:0.29
Consensus pattern (21 bp):
CGGGTTCTAGATCTGGGCCTC
Found at i:300715 original size:3 final size:3
Alignment explanation
Indices: 300707--300796 Score: 108
Period size: 3 Copynumber: 30.0 Consensus size: 3
300697 ATTTGGCCTG
* * * *
300707 TAA TAA TAA TAT TAT TTA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
300755 TAA TAA TAA TAA TAT TTA TAA AAA TAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
300797 AATGAAAAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:301254 original size:45 final size:45
Alignment explanation
Indices: 301047--301581 Score: 827
Period size: 45 Copynumber: 11.7 Consensus size: 45
301037 TAAAATCTCA
* * *
301047 TTTGAAAACATCCTGCACTGAAGGTCTTACAGATAACCCGAAGGCTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG--T
* * *
301094 TTTGAAAACATCCTGCACTGAAGGTCTTACGGATGACCCGAAGGTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG---T
* * * *
301142 TTTGAAAACATCCTGCACTGAAGGTCTTACGGATGACCCTAAGGTTTTT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGG----T
301191 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
301236 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
301281 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
301326 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
*
301371 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGGT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
* *
301416 TTTGAAAACATCATGCACTAAAGGGCTTACAGATGACCCGAAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
* *
301461 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGAT
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
* * *
301506 TTTGAAAACATCATGCATTGAAGGGCTTACAGATGACCTGAAGGC
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
301551 TTTGAAAACATCATGCACTGAAGGGCTTACA
1 TTTGAAAACATCATGCACTGAAGGGCTTACA
301582 AATGTGGGAA
Statistics
Matches: 464, Mismatches: 22, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
45 333 0.72
47 42 0.09
48 45 0.10
49 44 0.09
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGT
Found at i:302275 original size:22 final size:22
Alignment explanation
Indices: 302250--302328 Score: 113
Period size: 22 Copynumber: 3.6 Consensus size: 22
302240 AATAAGGCTT
* *
302250 TCATCTTTGAAAAGATAATCTA
1 TCATCTTTGAAGAGAGAATCTA
*
302272 TCATCTTTGAAGAGAGAATGTA
1 TCATCTTTGAAGAGAGAATCTA
* *
302294 CCATATTTGAAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
302316 TCATCTTTGAAGA
1 TCATCTTTGAAGA
302329 ATTTAAATGT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATCTA
Found at i:310098 original size:43 final size:43
Alignment explanation
Indices: 310015--310099 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
310005 ACGTGCATCA
* *
310015 AACAAAACTTTACATGTAGGGGACAACTTTCAGTCCTAACTTT
1 AACAAAACTTTACATATAGGGGACAACTTTCACTCCTAACTTT
* * * *
310058 AACAAAACTTTATATATAGGGGATAACTTTCCCTCTTAACTT
1 AACAAAACTTTACATATAGGGGACAACTTTCACTCCTAACTT
310100 CTCTAAAACT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (43 bp):
AACAAAACTTTACATATAGGGGACAACTTTCACTCCTAACTTT
Found at i:311494 original size:17 final size:17
Alignment explanation
Indices: 311472--311504 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
311462 CTTGAAAAAA
311472 AATAAAATAAA-AATATT
1 AATAAAA-AAATAATATT
311489 AATAAAAAAATAATAT
1 AATAAAAAAATAATAT
311505 ACATATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AATAAAAAAATAATATT
Found at i:311515 original size:29 final size:29
Alignment explanation
Indices: 311466--311579 Score: 89
Period size: 29 Copynumber: 4.0 Consensus size: 29
311456 TTAATACTTG
311466 AAAAAA-AATA-AAATAAAAATATTAAT-A
1 AAAAAATAATATAAATAAAAATATT-ATGA
* *
311493 AAAAAATAATATACATATAAATATTATGA
1 AAAAAATAATATAAATAAAAATATTATGA
* *
311522 AAATAATAAGTATATATAAAAAT-TT-TGA
1 AAAAAATAA-TATAAATAAAAATATTATGA
* *
311550 AAAGAAAGAATTATAAAT-TAAATA-TATGA
1 AAA-AAATAA-TATAAATAAAAATATTATGA
311579 A
1 A
311580 TTTTTAATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
27 6 0.09
28 17 0.24
29 36 0.51
30 11 0.16
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.29
Consensus pattern (29 bp):
AAAAAATAATATAAATAAAAATATTATGA
Found at i:311524 original size:28 final size:27
Alignment explanation
Indices: 311464--311552 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 27
311454 ATTTAATACT
* *
311464 TGAAAAAA-AATAAAATAAAAATATTAA
1 TGAAAAAATAATATAATATAAATATT-A
*
311491 TAAAAAAATAATATACATATAAATATTA
1 TGAAAAAATAATATA-ATATAAATATTA
* *
311519 TGAAAATAATAAGTAT-ATATAAAAATTT
1 TGAAAA-AATAA-TATAATATAAATATTA
311547 TGAAAA
1 TGAAAA
311553 GAAAGAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 7 0.13
28 27 0.52
29 15 0.29
30 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (27 bp):
TGAAAAAATAATATAATATAAATATTA
Found at i:313643 original size:3 final size:3
Alignment explanation
Indices: 313637--313702 Score: 78
Period size: 3 Copynumber: 22.0 Consensus size: 3
313627 TTATTTATAG
* * ** *
313637 TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TAT TTT TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
313685 TAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
313703 AATGAAAAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:319984 original size:17 final size:18
Alignment explanation
Indices: 319941--319981 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
319931 AATTTATATT
319941 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
319958 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
319976 ATTAAA
1 AGTAAA
319982 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:320041 original size:10 final size:10
Alignment explanation
Indices: 320028--320052 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
320018 ACAAGAGAAT
320028 ATTTGAGAGA
1 ATTTGAGAGA
320038 ATTTGAGAGA
1 ATTTGAGAGA
320048 ATTTG
1 ATTTG
320053 GTGTGATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (10 bp):
ATTTGAGAGA
Found at i:320219 original size:17 final size:17
Alignment explanation
Indices: 320194--320228 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
320184 GGAGCAGAGG
320194 GCGCACTATAGCCACGT
1 GCGCACTATAGCCACGT
*
320211 GCGCGCTATAGCCACGT
1 GCGCACTATAGCCACGT
320228 G
1 G
320229 TAACCCAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (17 bp):
GCGCACTATAGCCACGT
Found at i:321605 original size:2 final size:2
Alignment explanation
Indices: 321598--321630 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
321588 TGTACAAATG
*
321598 TA TA TA TA TA TA TA TA TA TA TA T- TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
321631 CTTTTGGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:321757 original size:37 final size:37
Alignment explanation
Indices: 321704--321775 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
321694 TTTGGTTACA
*
321704 AAGATCCTTACTTTTTGTTTACATTTGATAGTTTATG
1 AAGATCCTTACCTTTTGTTTACATTTGATAGTTTATG
*
321741 AAGATCCTTACCTTTTGTTTATATTTGATAGTTTA
1 AAGATCCTTACCTTTTGTTTACATTTGATAGTTTA
321776 ATGAGTTCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.51
Consensus pattern (37 bp):
AAGATCCTTACCTTTTGTTTACATTTGATAGTTTATG
Found at i:325560 original size:19 final size:19
Alignment explanation
Indices: 325536--325585 Score: 55
Period size: 23 Copynumber: 2.4 Consensus size: 19
325526 CAATTTACTT
*
325536 ATAACTATGAATCTTATTA
1 ATAACTATGAATCTTATCA
325555 ATAACTATTTTTGAATCTTATCA
1 ATAACTA----TGAATCTTATCA
325578 ATAACTAT
1 ATAACTAT
325586 TTTGGAGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
19 8 0.31
23 18 0.69
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (19 bp):
ATAACTATGAATCTTATCA
Found at i:325573 original size:23 final size:23
Alignment explanation
Indices: 325543--325588 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
325533 CTTATAACTA
*
325543 TGAATCTTATTAATAACTATTTT
1 TGAATCTTATCAATAACTATTTT
325566 TGAATCTTATCAATAACTATTTT
1 TGAATCTTATCAATAACTATTTT
325589 GGAGAACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.50
Consensus pattern (23 bp):
TGAATCTTATCAATAACTATTTT
Found at i:332994 original size:3 final size:3
Alignment explanation
Indices: 332979--333022 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
332969 TACTGAAAAT
332979 TAA TAA GTAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
333023 TCTACTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:333333 original size:113 final size:113
Alignment explanation
Indices: 333196--333422 Score: 339
Period size: 113 Copynumber: 2.0 Consensus size: 113
333186 GTTAAGATCC
**
333196 TTAATAAGTCTTATCAAGATATCATT-TGAGTTGGAATGTATTCATAATCTTTCCAATGCCATCA
1 TTAATAAGTCTTATCAAGATATCATTCT-AGTTGGAATGTATTCATAATCTTTCCAACACCATCA
* * *
333260 TTAAGGCTCAAAGCACAACCATACCATAAACACTAGCCACTATAAGAAT
65 TTAACGCGCAAAACACAACCATACCATAAACACTAGCCACTATAAGAAT
* * *
333309 TTAATAAGTCTTATCAAGATATCATTCTAGTTGGAATGTGTTCATAGTCTTTCCAACATCATCAT
1 TTAATAAGTCTTATCAAGATATCATTCTAGTTGGAATGTATTCATAATCTTTCCAACACCATCAT
* * *
333374 TAACGCGCAAAACACAACCATACCATAAACGCTAGCCATTGTAAGAAT
66 TAACGCGCAAAACACAACCATACCATAAACACTAGCCACTATAAGAAT
333422 T
1 T
333423 CTTTCACGCC
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
113 101 0.99
114 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (113 bp):
TTAATAAGTCTTATCAAGATATCATTCTAGTTGGAATGTATTCATAATCTTTCCAACACCATCAT
TAACGCGCAAAACACAACCATACCATAAACACTAGCCACTATAAGAAT
Found at i:334893 original size:21 final size:21
Alignment explanation
Indices: 334845--334893 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
334835 GCTGCTTCTT
334845 CTTCT-TCCTCCACTTCTCTC
1 CTTCTCTCCTCCACTTCTCTC
*
334865 CTTTCTCTCCTCCGC-TCTACTC
1 C-TTCTCTCCTCCACTTCT-CTC
334887 CTTCTCT
1 CTTCTCT
334894 TTCTTTCTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 11 0.44
ACGTcount: A:0.04, C:0.49, G:0.02, T:0.45
Consensus pattern (21 bp):
CTTCTCTCCTCCACTTCTCTC
Found at i:337327 original size:20 final size:20
Alignment explanation
Indices: 337296--337333 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
337286 TAGATTTTAA
337296 AATATATATATTTTAAAATTC
1 AATATATATA-TTTAAAATTC
337317 AATAT-TATATTTAAAAT
1 AATATATATATTTAAAAT
337334 AATGAGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 4 0.24
21 5 0.29
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATATATATTTAAAATTC
Found at i:352490 original size:21 final size:21
Alignment explanation
Indices: 352466--352510 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
352456 ACAAAGCTCT
352466 GTTCTCAGCTCCGACAATTTC
1 GTTCTCAGCTCCGACAATTTC
*
352487 GTTCTCAGCTCTGACAATTTC
1 GTTCTCAGCTCCGACAATTTC
352508 GTT
1 GTT
352511 TCCATATCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.38
Consensus pattern (21 bp):
GTTCTCAGCTCCGACAATTTC
Found at i:355283 original size:17 final size:17
Alignment explanation
Indices: 355261--355303 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
355251 CACTCTCACT
*
355261 TCTTGTGCAATGTCTGG
1 TCTTGTGCAATGTCTGA
355278 TCTTGTGCAATGTCTGA
1 TCTTGTGCAATGTCTGA
355295 TCTTGTGCA
1 TCTTGTGCA
355304 TATCATAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.14, C:0.19, G:0.26, T:0.42
Consensus pattern (17 bp):
TCTTGTGCAATGTCTGA
Found at i:357683 original size:23 final size:23
Alignment explanation
Indices: 357665--357725 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
357655 CTCATATAAA
*
357665 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
* *
357688 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCACATAGAAT
357711 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
357726 TATAATAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGTAGTGCCACATAGAAT
Found at i:357859 original size:18 final size:18
Alignment explanation
Indices: 357836--357871 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
357826 GAATACATAT
357836 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
357854 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
357872 TATCATTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.11
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACA
Found at i:357946 original size:121 final size:121
Alignment explanation
Indices: 357732--358095 Score: 694
Period size: 121 Copynumber: 3.0 Consensus size: 121
357722 GCCATATAAT
357732 AATGT-CCATAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATG
1 AATGTCCCA-AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATG
*
357796 CGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
65 TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
*
357853 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
1 AATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
357918 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
357974 AATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
1 AATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
358039 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
358095 A
1 A
358096 TAGACCCTCA
Statistics
Matches: 239, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
121 237 0.99
122 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (121 bp):
AATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
Found at i:357980 original size:18 final size:18
Alignment explanation
Indices: 357957--357992 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
357947 GAATACATAT
*
357957 ATGTCCCGAAGGACCACA
1 ATGTCCCAAAGGACCACA
357975 ATGTCCCAAAGGACCACA
1 ATGTCCCAAAGGACCACA
357993 TATCATTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.33, G:0.19, T:0.11
Consensus pattern (18 bp):
ATGTCCCAAAGGACCACA
Found at i:359295 original size:21 final size:21
Alignment explanation
Indices: 359271--359314 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
359261 ATTTTATTCG
*
359271 CTTGAAGGGGTATCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
*
359292 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
359313 CT
1 CT
359315 AGCCCAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:360063 original size:23 final size:23
Alignment explanation
Indices: 360026--360093 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
360016 GATGTTACAT
360026 AAATGCACCGAAGTGCCATATAG
1 AAATGCACCGAAGTGCCATATAG
* * ***
360049 AATTGCACCGTAGTGCCGCGTAG
1 AAATGCACCGAAGTGCCATATAG
*
360072 AAATGCATCGAAGTGCCATATA
1 AAATGCACCGAAGTGCCATATA
360094 AGGTTGTCCC
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.21
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCATATAG
Found at i:362477 original size:23 final size:22
Alignment explanation
Indices: 362451--362514 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
362441 CAGCTCATAT
*
362451 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGAAG
* *
362474 AATTGCACCGGAGTGCCGCGAAG
1 AATTGCACC-TAGTGCCACGAAG
*
362497 AATTACACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
362515 TATAATAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.19
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGAAG
Found at i:362655 original size:103 final size:103
Alignment explanation
Indices: 362530--362747 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
362520 TAATGTCCAT
*
362530 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
362595 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
*
362633 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCT
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
362698 GACCTCACACATGTTCCAAAGAATACATATATGTCCTG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
362736 AAGGACCACATA
1 AAGGACCACATA
362748 GACCCTCTAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:363274 original size:19 final size:20
Alignment explanation
Indices: 363235--363273 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
363225 TTTTTTTTTA
*
363235 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
363255 TGGGGGTATCGATTCCCCC
1 TGGGGGAATCGATTCCCCC
363274 TAGCATTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.33, G:0.33, T:0.23
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:363323 original size:21 final size:21
Alignment explanation
Indices: 363299--363339 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
363289 TCATATTCGT
*
363299 TTGAGGGGGTATCAATTCCCA
1 TTGAAGGGGTATCAATTCCCA
* *
363320 TTGAATGGGTATCGATTCCC
1 TTGAAGGGGTATCAATTCCC
363340 CTAGCCCAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTATCAATTCCCA
Found at i:369409 original size:23 final size:22
Alignment explanation
Indices: 369383--369446 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
369373 CAGCTCATAT
369383 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* *
369406 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
369429 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
369447 TATAATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:369590 original size:103 final size:103
Alignment explanation
Indices: 369465--369679 Score: 403
Period size: 103 Copynumber: 2.1 Consensus size: 103
369455 TGTCCATAAG
*
369465 GACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
1 GACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
*
369530 TTCACACATGTTCCAAAGAATACATATATGTCCCGAAA
66 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAA
369568 GACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
1 GACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
*
369633 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAG
66 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAA
369671 GACCACATA
1 GACCACATA
369680 GACCCTCTAC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (103 bp):
GACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGAC
CTCACACATGTTCCAAAGAATACATATATGTCCCGAAA
Found at i:370208 original size:20 final size:19
Alignment explanation
Indices: 370171--370209 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
370161 TTTTTTGTTA
*
370171 TGGGGGAATCGGTTCCCCC
1 TGGGGGAATCGATTCCCCC
*
370190 TGGGGGTATCGATTCCCCC
1 TGGGGGAATCGATTCCCCC
370209 T
1 T
370210 AGCATTCTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.10, C:0.31, G:0.33, T:0.26
Consensus pattern (19 bp):
TGGGGGAATCGATTCCCCC
Found at i:370258 original size:21 final size:21
Alignment explanation
Indices: 370234--370274 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
370224 TCATATTCGT
*
370234 TTGAGGGGGTATCGATTCCCA
1 TTGAAGGGGTATCGATTCCCA
*
370255 TTGAATGGGTATCGATTCCC
1 TTGAAGGGGTATCGATTCCC
370275 CTAGCCCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCA
Found at i:376050 original size:15 final size:15
Alignment explanation
Indices: 376030--376062 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
376020 TAATCTTATA
376030 AATAACCTAAA-GTAC
1 AATAA-CTAAATGTAC
376045 AATAACTAAATGTAC
1 AATAACTAAATGTAC
376060 AAT
1 AAT
376063 TTTACCATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (15 bp):
AATAACTAAATGTAC
Found at i:377303 original size:60 final size:60
Alignment explanation
Indices: 377233--377366 Score: 173
Period size: 60 Copynumber: 2.2 Consensus size: 60
377223 TATTGGTAAA
* * * * *
377233 TTACACAAATGATCCTTCAATTATAGTA-TATTATTTTATTGAGTCACTC-GACTATTAAAAG
1 TTACA-AAATGATCCCTCAACTATAG-AGCATCATTTTATTCAGTC-CTCAGACTATTAAAAG
*
377294 TTACAAAATGATCCCTCAACTATAGAGCATCATTTTATTCAGTCCTCATACTATTAAAAG
1 TTACAAAATGATCCCTCAACTATAGAGCATCATTTTATTCAGTCCTCAGACTATTAAAAG
377354 TTACAAAATGATC
1 TTACAAAATGATC
377367 ACCTGACTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
59 4 0.06
60 56 0.86
61 5 0.08
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (60 bp):
TTACAAAATGATCCCTCAACTATAGAGCATCATTTTATTCAGTCCTCAGACTATTAAAAG
Found at i:381117 original size:23 final size:25
Alignment explanation
Indices: 381085--381150 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
381075 TTGGGTTTTC
*
381085 TTTTTGAAAT-TAA-AAAATA-AGTT
1 TTTTTAAAATATAATAAAATACA-TT
*
381108 TTTTTAAAATAATAATATAATACATT
1 TTTTTAAAAT-ATAATAAAATACATT
381134 TTTTTAAAATAT-ATAAA
1 TTTTTAAAATATAATAAA
381151 CATATCACGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
23 9 0.25
24 4 0.11
25 5 0.14
26 17 0.47
27 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (25 bp):
TTTTTAAAATATAATAAAATACATT
Found at i:382555 original size:2 final size:2
Alignment explanation
Indices: 382548--382591 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
382538 ACGTAATTTA
382548 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
382590 AT
1 AT
382592 TAGCGGAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:383669 original size:2 final size:2
Alignment explanation
Indices: 383664--383695 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
383654 TTTCTTTCTC
383664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
383696 GTTATCCAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:384204 original size:34 final size:34
Alignment explanation
Indices: 384161--384261 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
384151 TGTTGGAATG
*
384161 TAGTTTTCATTTACTTTTAGTTGGGTAACTGATC
1 TAGTTTTCATTTACTTTTAGTTGGCTAACTGATC
*
384195 TAGTTTTCATTTACTTTTAGTTGGCTAACTGATG
1 TAGTTTTCATTTACTTTTAGTTGGCTAACTGATC
384229 TAGTTTTCATTTACTTTTAGTTGGCTAACTGAT
1 TAGTTTTCATTTACTTTTAGTTGGCTAACTGAT
384262 AAAGAACCTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (34 bp):
TAGTTTTCATTTACTTTTAGTTGGCTAACTGATC
Found at i:389534 original size:36 final size:36
Alignment explanation
Indices: 389487--389598 Score: 206
Period size: 36 Copynumber: 3.1 Consensus size: 36
389477 TTATATCGAT
389487 TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
1 TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
389523 TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
1 TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
* *
389559 TATTAATGTTGGTGTTAGACTTAGTATCATGACGAC
1 TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
389595 TATT
1 TATT
389599 TATAGGCTGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 74 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (36 bp):
TATTAATGTTGGTGTTAGACTTGGTATCATTACGAC
Found at i:390892 original size:21 final size:19
Alignment explanation
Indices: 390868--390911 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
390858 TTTTATTTGG
*
390868 ATTTAGTATTCAATTAATATT
1 ATTTAGTAATCAATT--TATT
*
390889 ATTTATTAATCAATTTATT
1 ATTTAGTAATCAATTTATT
390908 ATTT
1 ATTT
390912 TTCTAGGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
21 13 0.62
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (19 bp):
ATTTAGTAATCAATTTATT
Found at i:395005 original size:24 final size:24
Alignment explanation
Indices: 394978--395029 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
394968 AACGGATATA
*
394978 TCAAAAATCAAAACATAATCCAGG
1 TCAAAAATCAAAACAAAATCCAGG
** * *
395002 TCAAGTATCAGATCAAAATCCAGG
1 TCAAAAATCAAAACAAAATCCAGG
395026 TCAA
1 TCAA
395030 GTATTCGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.21, G:0.12, T:0.19
Consensus pattern (24 bp):
TCAAAAATCAAAACAAAATCCAGG
Found at i:395029 original size:12 final size:13
Alignment explanation
Indices: 394994--395076 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 13
394984 ATCAAAACAT
394994 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* *
395007 TAT-CAGATCAA-
1 AATCCAGGTCAAG
395018 AATCCAGGTCAAG
1 AATCCAGGTCAAG
* * *
395031 TATTC-GATC-AG
1 AATCCAGGTCAAG
*
395042 AATCCAGGTCACG
1 AATCCAGGTCAAG
* *
395055 TATCCA-ATC-AG
1 AATCCAGGTCAAG
395066 AATCCAGGTCA
1 AATCCAGGTCA
395077 GGTATTATAA
Statistics
Matches: 48, Mismatches: 16, Indels: 12
0.63 0.21 0.16
Matches are distributed among these distances:
11 13 0.27
12 24 0.50
13 11 0.23
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (13 bp):
AATCCAGGTCAAG
Found at i:395091 original size:24 final size:24
Alignment explanation
Indices: 394994--395082 Score: 117
Period size: 24 Copynumber: 3.7 Consensus size: 24
394984 ATCAAAACAT
*
394994 AATCCAGGTCAAGTA-TCAGATCAA
1 AATCCAGGTCAAGTATTCA-ATCAG
*
395018 AATCCAGGTCAAGTATTCGATCAG
1 AATCCAGGTCAAGTATTCAATCAG
* *
395042 AATCCAGGTCACGTATCCAATCAG
1 AATCCAGGTCAAGTATTCAATCAG
*
395066 AATCCAGGTCAGGTATT
1 AATCCAGGTCAAGTATT
395083 ATAATAGAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
24 55 0.96
25 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (24 bp):
AATCCAGGTCAAGTATTCAATCAG
Found at i:399588 original size:15 final size:16
Alignment explanation
Indices: 399568--399606 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
399558 CGTTAACCCT
399568 CTTCTTCTTC-CTCTC
1 CTTCTTCTTCTCTCTC
*
399583 CTTCTTC-TCTTTCTC
1 CTTCTTCTTCTCTCTC
399598 CTTCTTCTT
1 CTTCTTCTT
399607 AACCAACGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 18 0.86
16 1 0.05
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (16 bp):
CTTCTTCTTCTCTCTC
Found at i:400320 original size:26 final size:28
Alignment explanation
Indices: 400277--400328 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
400267 ATATTTTCCA
*
400277 ATTTTCATAAAACTAAAAATA-AAAATT
1 ATTTTCATAAAAATAAAAATAGAAAATT
400304 ATTTTC-TAAAAATAAAAATAGAAAA
1 ATTTTCATAAAAATAAAAATAGAAAA
400329 CAAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.31
Consensus pattern (28 bp):
ATTTTCATAAAAATAAAAATAGAAAATT
Found at i:416797 original size:59 final size:60
Alignment explanation
Indices: 416667--416805 Score: 176
Period size: 59 Copynumber: 2.3 Consensus size: 60
416657 ACTATGAAGT
* * *
416667 CAAGTTTAGGTACCAATTTGAACCTAAAAGCCAAGTTCAAGTACCTAATTAGACAAAAAA
1 CAAGTTTAGGTGCCAAATTGAACCTAAAAGCCAAATTCAAGTACCTAATTAGACAAAAAA
* * *
416727 AAAGTTTAGGTGCCAAATTGAACCTTAAAG-CAAATTC-AGATACCTAATT-GAACCAAAAA
1 CAAGTTTAGGTGCCAAATTGAACCTAAAAGCCAAATTCAAG-TACCTAATTAG-ACAAAAAA
*
416786 CAAGTTTAGGTGCCGAATTG
1 CAAGTTTAGGTGCCAAATTG
416806 CACTTTGAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
58 3 0.04
59 40 0.58
60 26 0.38
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.24
Consensus pattern (60 bp):
CAAGTTTAGGTGCCAAATTGAACCTAAAAGCCAAATTCAAGTACCTAATTAGACAAAAAA
Found at i:428267 original size:54 final size:55
Alignment explanation
Indices: 428194--428327 Score: 200
Period size: 54 Copynumber: 2.5 Consensus size: 55
428184 CCAGAATTTA
* * * *
428194 GATTGAAGCACAGAGGTGCTCAGTCA-TAGTTGGCTGCACTGAGGTGTCAGTTCTC
1 GATTGAAGCACAGAGGTGCTCAATCACT-GTTGGCTACACAGAGGTGTCAGCTCTC
*
428249 GATTGAAGCACA-AGGTGCTCAATCACTTTTGGCTACACAGAGGTGTCAGCTCTC
1 GATTGAAGCACAGAGGTGCTCAATCACTGTTGGCTACACAGAGGTGTCAGCTCTC
428303 GATTGAAGCACAGAGGTGCTCAATC
1 GATTGAAGCACAGAGGTGCTCAATC
428328 GTTAATTCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
54 47 0.65
55 25 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (55 bp):
GATTGAAGCACAGAGGTGCTCAATCACTGTTGGCTACACAGAGGTGTCAGCTCTC
Found at i:428315 original size:27 final size:27
Alignment explanation
Indices: 428194--428324 Score: 92
Period size: 27 Copynumber: 4.8 Consensus size: 27
428184 CCAGAATTTA
*
428194 GATTGAAGCACAGAGGTGCTCAGTCATA
1 GATTGAAGCACAGAGGTGCTCAGTC-TC
** *
428222 G-TTGGCTGCACTGAGGTG-TCAGTTCTC
1 GATT-GAAGCACAGAGGTGCTCAG-TCTC
* *
428249 GATTGAAGCACA-AGGTGCTCAATCAC
1 GATTGAAGCACAGAGGTGCTCAGTCTC
** *
428275 TTTTGGCTA-CACAGAGGTG-TCAGCTCTC
1 GATT-G-AAGCACAGAGGTGCTCAG-TCTC
428303 GATTGAAGCACAGAGGTGCTCA
1 GATTGAAGCACAGAGGTGCTCA
428325 ATCGTTAATT
Statistics
Matches: 76, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
26 11 0.14
27 35 0.46
28 30 0.39
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (27 bp):
GATTGAAGCACAGAGGTGCTCAGTCTC
Found at i:428577 original size:81 final size:81
Alignment explanation
Indices: 428442--428598 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
428432 AGCGATACAA
*
428442 AGAATGGTTCGCACACAAAATGGCGGAGCAACAAGCTCTCACAAAGGTGTAGAGCAGGAAGTTAC
1 AGAATGGTTCGCACACAAAATGGCGGAGCAACAAGCTCTCACAAAGGTGTAGAGCAGGAAGCTAC
* *
428507 TGAGCCGGTTGCACCG
66 CGAGCCAGTTGCACCG
* * * * *
428523 AGAATGGTTCGCACACGAAATGGCGGATCGACAAGCTCTCACAGAGGTGTAGAGCATGAAGCTAC
1 AGAATGGTTCGCACACAAAATGGCGGAGCAACAAGCTCTCACAAAGGTGTAGAGCAGGAAGCTAC
428588 CGAGCCAGTTG
66 CGAGCCAGTTG
428599 TGCAAGAGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.31, C:0.22, G:0.30, T:0.17
Consensus pattern (81 bp):
AGAATGGTTCGCACACAAAATGGCGGAGCAACAAGCTCTCACAAAGGTGTAGAGCAGGAAGCTAC
CGAGCCAGTTGCACCG
Found at i:441861 original size:3 final size:3
Alignment explanation
Indices: 441853--441878 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
441843 CCAAAGAGAG
441853 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
441879 CAATTTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:442487 original size:17 final size:18
Alignment explanation
Indices: 442465--442503 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
442455 TCCTTTAAAT
442465 TTTAAAT-TTTTATATAA
1 TTTAAATCTTTTATATAA
* *
442482 TTTAAATCTTTTTTATAT
1 TTTAAATCTTTTATATAA
442500 TTTA
1 TTTA
442504 TTAATAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTAAATCTTTTATATAA
Found at i:445811 original size:923 final size:914
Alignment explanation
Indices: 442858--446794 Score: 6158
Period size: 913 Copynumber: 4.3 Consensus size: 914
442848 AAGAAGCAGC
** **
442858 CTGGTTGCAGTTGGATAGAACTAGAGAATAAGGTATATGTGTTTTGTGGCTGGTGCCAAATCTCA
1 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGT-GCTGGTGCCAAATCTCA
* * * *
442923 TTCTCATACCGAACTTATTTACCTTGTACTACATGAACTTCATGCAAAAATTAGGAAGGCTGGAA
65 TTCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTGGAA
* *
442988 ATATATCCAATACTAATTAATTGTAGGAGGAATATTTGGCTAATTTTGTAGACGCAACTGCTCTA
130 ATATATCCAATACTAATTACTTGTAGGAGGAAAATTTGGCTAATTTTGTAGACGCAACTGCTCTA
*
443053 ATCCAAGTCCTCTAGATAAAACAACA-TTATAAATATAAGATACTCAGTTATATTAATGAGGATA
195 ATCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
*
443117 AAATATCATATTCTTGTTATATATGAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGAA
260 AAATATCATATTCTTGTTATAGATGAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGAA
*
443182 GATGAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACGCAAATC
325 GATGAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAATC
* * *
443247 TTTGCACAAGCTAAAACGGGTTGCAAGTTCTGAAAACATACAATTTGGTCCCTAAATTTATTAAA
390 TTTGCACATGCTAAAACGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAAA
*
443312 TAAATTTATATTTTATATTTTATTTTATTTTTATTATTTGTATCTTAAATTAGGGTTGTGACAAA
455 TAAA-TT-TA---TA-A-TTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAA
** * * * **
443377 AATAAAGGGATACTACAAAGGTAAGGTTGAAAATAAATGATAAGGGATTAAAGAATAAGCCTAGT
513 AATGGAGGGATGCTACAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGT
* * *
443442 TGCAGTTGGATTTTTTTTGAAAATAATGTGGCCCTCATTAAAAACCCATTCTAATCTTAATAAGG
578 TGCAGTTGGATTTTTTTT--AAATAATGCGGGCCTCATTAAAAACCCCTTCTAATCTTAATAAGG
* *
443507 GGAAAAGAGTGCCCAAAATTTCATTAATCAATAAGTAATTACATCTTTTTGAATGTCTCTAGCAA
641 GGAAAAGAGTGCCCAAAATTTCATTAATCAAGAAGTAATTACATCTTTGTGAATGTCTCTAGCAA
* ** * * * *
443572 TGATAACGGGACAAAATGAATCAAAGAACAACGCACTATAAGAAACAACTGGCCCAGCTAGCGAG
706 TGATATCGGGACAAACCGAATCAAAGAACAATGCACTATCAGAAACAACTGACCCAACTAGCGAG
*
443637 AGCATGAGCTACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTTTGAA
771 AGCATGAGCCACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTTTGAA
* * *
443702 AAACAACATGTGCTTCCTGAATGAAAATTCCCAACGTCGAGATGTCATCCGAGTCCTGTGTAATT
836 AAACAACACGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCGTGTAATT
443767 TTGTTCACAAGTAT
901 TTGTTCACAAGTAT
443781 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
1 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
* * *
443846 TCTCATGCCAAACTTAATTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGACTGGAAA
66 TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTGGAAA
*
443911 TATATCCAAAACTAATTACTTGTAGGA-GAAAATTTTGGCTAATTTTGTAGACGCAACTGCTCTA
131 TATATCCAATACTAATTACTTGTAGGAGGAAAA-TTTGGCTAATTTTGTAGACGCAACTGCTCTA
*
443975 ATCTAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
195 ATCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
*
444040 AAATATCATATTCTTGTTATAGATGAGCCA-AT-TATTAATGATAATAGCCAAATCTTGATTGAA
260 AAATATCATATTCTTGTTATAGATGAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGAA
**
444103 GACAAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAATC
325 GATGAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAATC
* *
444168 TTTGCACATGTTAAAACGGGCTGCAAGTTCCGAAAACTTACAATTTGGTCCCTAAATTTATTAAA
390 TTTGCACATGCTAAAACGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAAA
* *
444233 TAAATTTATAATTTATATTA-TTTTATTATTTTTATCTTAAATTAAGGTTGTGACAAAAATGGAG
455 TAAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGAG
* * *
444297 GGATGCTACAAAGGTAAGGTTGAATATAAAGGATAAGGGATTAAAGAATCAGCCTAGTTGCAGTT
520 GGATGCTACAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGTTGCAGTT
* **
444362 GGATTTTTTTTTTAAATAATGCGGGCCTCATTAAAAACCCTTTCTAATCTTAATAAGGGGAACTG
585 GGA--TTTTTTTTAAATAATGCGGGCCTCATTAAAAACCCCTTCTAATCTTAATAAGGGGAAAAG
* * *
444427 AGAGCCCAAAATTTCATTAATCAAGAAGTAACTACATCTTTCTGAATGTCTCTAGCAATGATATC
648 AGTGCCCAAAATTTCATTAATCAAGAAGTAATTACATCTTTGTGAATGTCTCTAGCAATGATATC
* * * *
444492 GGGACAAACCGAATCAAAGAACAATGCACTATCAAAAACAACTGGCCCAGCTAGCTAGAGCATGA
713 GGGACAAACCGAATCAAAGAACAATGCACTATCAGAAACAACTGACCCAACTAGCGAGAGCATGA
* *
444557 GCCACATGATTACAATCACGATTAATATAACTAATGTGGAATTTAGGATTAGTTTGAAAAACAAC
778 GCCACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTTTGAAAAACAAC
* *
444622 ATGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCATGTAATTTTGTTCA
843 ACGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCGTGTAATTTTGTTCA
444687 CAAGTAT
908 CAAGTAT
* * * *
444694 CTGGTTGCAACTGGATAGAAGTAGAGAATAAGGTCCATGTGTTCTGTGTTGGTGCCAAAACTCAT
1 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
*
444759 TCTCATGCCGAACTTATTTACCATGTACTGCATGAACTTCATGCAAAAAATGAGGAAGGCTGGAA
66 TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGC-AAAAATGAGGAAGGCTGGAA
* * * **
444824 ATATATCCAATACTAATTACTTGTAGAAGGAAATTTTGGATAATTTTGTAGACGCAGTTGCTCTA
130 ATATATCCAATACTAATTACTTGTAGGAGGAAAATTTGGCTAATTTTGTAGACGCAACTGCTCTA
*
444889 ATCCAAGTCCTATAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
195 ATCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
*
444954 AAATATCATATTCTTGTTATAGATAAAGCCAGTTATA-TAATGATAATAGCC-AATCTTGATT-A
260 AAATATCATATTCTTGTTATAGAT-GAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGA
* *
445016 AGATGAAAGTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACACAT
324 AGATGAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAAT
* * *
445081 CTTCGCGCATGCTAAAATGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAA
389 CTTTGCACATGCTAAAACGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAA
445146 ATAAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGA
454 ATAAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGA
* **
445211 GGGATGCTATAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGTTATAGT
519 GGGATGCTACAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGTTGCAGT
* *
445276 TGGATTTTTTTTTTGGAAAGAATGTGGGCCTCATTAAAAAAATAAAAACCCCTTCTAATCTTAAT
584 TGGA--TTTTTTTT--AAATAATGCGGGCCTCA-T-------TAAAAACCCCTTCTAATCTTAAT
* *
445341 AAGGGG-AAA-AGTGCCAAAAATTTCATTAATCAAGAAGTGATTACATCTTTGTGAATGTCTCTA
637 AAGGGGAAAAGAGTGCCCAAAATTTCATTAATCAAGAAGTAATTACATCTTTGTGAATGTCTCTA
* * *
445404 GCACTGATATCAGGACAAACCGAATCAAATAACAATGCACTATCAGAAACAACTGACCCAACTAG
702 GCAATGATATCGGGACAAACCGAATCAAAGAACAATGCACTATCAGAAACAACTGACCCAACTAG
* *
445469 CGAGAGCATGAGCCACATGATTACAATCACGACTGATATAACTAATATGGAATCTAGGATTAGTT
767 CGAGAGCATGAGCCACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTT
* * *
445534 TGAAAAAACAATACGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCTGAATCCCGTG
832 TG-AAAAACAACACGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCGTG
445599 TAATTTTGTTCACAAGTAT
896 TAATTTTGTTCACAAGTAT
* * * * *
445618 CTGGTTGCAACTGTATATAACTAGAGAATAAGTTACATATGTTTTGTGCTGGTGCCAAATCTCAT
1 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
*
445683 TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTTGAAA
66 TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTGGAAA
* *
445748 TATATCCAATACTTATTACTTGTAGGAGGAAAATTTGGCTAATTTTATAGACGCAACTGCTCTAA
131 TATATCCAATACTAATTACTTGTAGGAGGAAAATTTGGCTAATTTTGTAGACGCAACTGCTCTAA
*
445813 TCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTTAGTTATATTAATGAGGATAA
196 TCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATAA
* * *
445878 AATATTATATTCTTGTTATACATAGAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTAAA
261 AATATCATATTCTTGTTATAGAT-GAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGAA
*
445943 G-TCGAAATTATACATTCAAATTAATTAAAGTCTACATAAGAAGCTAGTAATTAATTACACAAAT
325 GAT-GAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAAT
*
446007 CTTTGCACATGCTAAAACGGGATGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAA
389 CTTTGCACATGCTAAAACGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAA
446072 ATAAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGA
454 ATAAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGA
* *
446137 GGGATGCTACAAAGATAAGGTTAAAAATAAAGGATAAGGGATTAAAGAAGCAACCTAGTTGCAGT
519 GGGATGCTACAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGTTGCAGT
* * *
446202 TGGATTTTTTTTAAATAATACGGGCCTCATTAAAAACCCCTTATAATCTTAATAAGGGGAAAATA
584 TGGATTTTTTTTAAATAATGCGGGCCTCATTAAAAACCCCTTCTAATCTTAATAAGGGGAAAAGA
* *
446267 GTGCCCAAAATTTCATTAATCAAGAAATAATTACATCTTTGTGAATGTCTCTAACAATGATATCG
649 GTGCCCAAAATTTCATTAATCAAGAAGTAATTACATCTTTGTGAATGTCTCTAGCAATGATATCG
*
446332 GGACAAACCGAATCAAAGAACAATGCACTATCAG-AACAACTGACCCAACTAGCGTGAGCATGAG
714 GGACAAACCGAATCAAAGAACAATGCACTATCAGAAACAACTGACCCAACTAGCGAGAGCATGAG
*
446396 CCACATGATTACAATCACGATTGATATAACTAATGTGGAATCTTGGATTAGTTTGAAAAACAACA
779 CCACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTTTGAAAAACAACA
* *
446461 CGTGCTTCCTGAATGAAAATTCCCAATGTCGAAATGTCATCCGAGTCCCGTGTAATTTTGCTCAC
844 CGTGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCGTGTAATTTTGTTCAC
446526 AAGTA-
909 AAGTAT
** * * *
446531 -----T----CTGGATAGAACTAGAGAATAACTTCCATGTGTTTTGTGTTAGTGCCAAATATCAT
1 CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
* * *
446587 TCTCATGCCAAACTTATTTACCCTGTACTGCATGAACTTCATGTAAAAATGAGGAAGACTGGAAA
66 TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTGGAAA
* * *
446652 TATATCCAATATTAATTAC-TGATAGGAGGAAAACTTGGCTAATTTTGTAGACGCAACTGCTTTA
131 TATATCCAATACTAATTACTTG-TAGGAGGAAAATTTGGCTAATTTTGTAGACGCAACTGCTCTA
* * * *
446716 ATCCAAGTCCTCTGGGTAAAATAACATTTACAAATATAAGGTACTCA-TTATATTAATGAGGATA
195 ATCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATA
446780 AAATATCATATTCTT
260 AAATATCATATTCTT
446795 TGTTGAATTA
Statistics
Matches: 2790, Mismatches: 196, Indels: 76
0.91 0.06 0.02
Matches are distributed among these distances:
903 33 0.01
904 206 0.07
908 1 0.00
913 503 0.18
914 413 0.15
915 227 0.08
916 110 0.04
917 17 0.01
918 1 0.00
919 2 0.00
920 2 0.00
921 162 0.06
922 171 0.06
923 454 0.16
924 198 0.07
925 39 0.01
926 251 0.09
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (914 bp):
CTGGTTGCAACTGGATAGAACTAGAGAATAAGGTCCATGTGTTTTGTGCTGGTGCCAAATCTCAT
TCTCATGCCGAACTTATTTACCCTGTACTGCATGAACTTCATGCAAAAATGAGGAAGGCTGGAAA
TATATCCAATACTAATTACTTGTAGGAGGAAAATTTGGCTAATTTTGTAGACGCAACTGCTCTAA
TCCAAGTCCTCTAGGTAAAACAACATTTATAAATATAAGATACTCAGTTATATTAATGAGGATAA
AATATCATATTCTTGTTATAGATGAGCCAGTTATATTAATGATAATAGCCAAATCTTGATTGAAG
ATGAAATTATACATTCAAATTAATTAAAGTCTACATCAGAAGCTAGTAATTAATTACACAAATCT
TTGCACATGCTAAAACGGGCTGCAAGTTCTGAAAACTTACAATTTGGTCCCTAAATTTATTAAAT
AAATTTATAATTTATTTTATTTTTATTATTTTTATCTTAAATTAGGGTTGTGACAAAAATGGAGG
GATGCTACAAAGATAAGGTTGAAAATAAAGGATAAGGGATTAAAGAAGCAGCCTAGTTGCAGTTG
GATTTTTTTTAAATAATGCGGGCCTCATTAAAAACCCCTTCTAATCTTAATAAGGGGAAAAGAGT
GCCCAAAATTTCATTAATCAAGAAGTAATTACATCTTTGTGAATGTCTCTAGCAATGATATCGGG
ACAAACCGAATCAAAGAACAATGCACTATCAGAAACAACTGACCCAACTAGCGAGAGCATGAGCC
ACATGATTACAATCACGATTGATATAACTAATGTGGAATCTAGGATTAGTTTGAAAAACAACACG
TGCTTCCTGAATGAAAATTCCCAATGTCGAGATGTCATCCGAGTCCCGTGTAATTTTGTTCACAA
GTAT
Found at i:446991 original size:20 final size:19
Alignment explanation
Indices: 446939--446992 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
446929 AGGGTGTCAA
*
446939 AGTGTATCCATGCACCTGC
1 AGTGCATCCATGCACCTGC
* *
446958 AGTGCATCGATGCACCATGT
1 AGTGCATCCATGCACC-TGC
*
446978 AGTGCATCCTTGCAC
1 AGTGCATCCATGCAC
446993 TCAAACACCG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (19 bp):
AGTGCATCCATGCACCTGC
Found at i:449955 original size:55 final size:55
Alignment explanation
Indices: 449882--450318 Score: 303
Period size: 51 Copynumber: 8.2 Consensus size: 55
449872 AATGACGAGC
**
449882 CTGCTCCCTATTCCTTCAGGAAGTATAAGACTCGAACAATCCTT-GGCAAACGTGT
1 CTGCTCCCTATTCCTTCAGGAAGTATAAGACTCGAACAAT-CTTCAACAAACGTGT
* * *
449937 CTTCTCCCTATTCATTCAGGGAA-TATAAGACTCAAACAATCTTCAACAAACGTGT
1 CTGCTCCCTATTCCTTCA-GGAAGTATAAGACTCGAACAATCTTCAACAAACGTGT
* * * * *
449992 CTGCTCCCTATTCGTTCAGGGAGTATAAGGCTCGAATAATCTTCAACAAACGGGT
1 CTGCTCCCTATTCCTTCAGGAAGTATAAGACTCGAACAATCTTCAACAAACGTGT
* * *
450047 CCGCTCCCTATTCCTTCA-GAGAGTATAAGACTCG----ATCTTCAATAAACGTAT
1 CTGCTCCCTATTCCTTCAGGA-AGTATAAGACTCGAACAATCTTCAACAAACGTGT
* * * * * *
450098 CCGCTCCCTATTCCTTCA-G-AG-AGTAGGACTCAAAACAATCTTCACCGAACTTGT
1 CTGCTCCCTATTCCTTCAGGAAGTA-TAAGACTC-GAACAATCTTCAACAAACGTGT
* * ** *
450152 CCGCTCCCTATTCCTTCA-GAGAGTATAGGACT----CAATCTTCAATGAACTTGT
1 CTGCTCCCTATTCCTTCAGGA-AGTATAAGACTCGAACAATCTTCAACAAACGTGT
* * * * *
450203 CCGCTCCCTATTCATTCA-GAGAGTATAGGACT----CAATCTTCAACGAACTTGT
1 CTGCTCCCTATTCCTTCAGGA-AGTATAAGACTCGAACAATCTTCAACAAACGTGT
* * * * *
450254 CCGCTCCCTATTCATTCA-GAGAGTATAGGACT----CAATCTTCAACGAACTTGT
1 CTGCTCCCTATTCCTTCAGGA-AGTATAAGACTCGAACAATCTTCAACAAACGTGT
*
450305 CCGCTCCCTCATTC
1 CTGCTCCCT-ATTC
450319 AGAGAGTATA
Statistics
Matches: 338, Mismatches: 30, Indels: 31
0.85 0.08 0.08
Matches are distributed among these distances:
48 1 0.00
49 9 0.03
51 159 0.47
52 4 0.01
54 38 0.11
55 113 0.33
56 13 0.04
57 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
CTGCTCCCTATTCCTTCAGGAAGTATAAGACTCGAACAATCTTCAACAAACGTGT
Found at i:450106 original size:51 final size:51
Alignment explanation
Indices: 449928--450349 Score: 433
Period size: 51 Copynumber: 8.1 Consensus size: 51
449918 CAATCCTTGG
** * * *
449928 CAAACGTGTCTTCTCCCTATTCATTCAGGGAATATAAGACTCAAACAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACT----CAATCTTCAA
* * *
449983 CAAACGTGTCTGCTCCCTATTCGTTCAGGGAGTATAAGG-CTCGAATAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTAT-AGGACTC----AATCTTCAA
* * * *
450038 CAAACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAAGACTCGATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
* * * *
450089 TAAACGTATCCGCTCCCTATTCCTTCAGAGAG--TAGGACTCAAAACAATCTTCAC
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACT-----CAATCTTCAA
* * *
450143 CGAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
** *
450194 TGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
* *
450245 CGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
* * *
450296 CGAACTTGTCCGCTCCC---TCATTCAGAGAGTATAGGACTTAATCTTCAA
1 CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
450344 CAAACG
1 CAAACG
450350 AATTTACTTC
Statistics
Matches: 327, Mismatches: 27, Indels: 33
0.84 0.07 0.09
Matches are distributed among these distances:
48 34 0.10
49 6 0.02
51 163 0.50
54 38 0.12
55 77 0.24
56 9 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (51 bp):
CAAACGTGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAA
Found at i:450223 original size:156 final size:156
Alignment explanation
Indices: 449940--450349 Score: 478
Period size: 156 Copynumber: 2.6 Consensus size: 156
449930 AACGTGTCTT
* * * * * *
449940 CTCCCTATTCATTCAGGGAATATAAGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTATTC
1 CTCCCTATTCATTCAGAG-AGATAGGACTCAAACAATCTTCAACGAACTTGTCCGCTCCCTATTC
* * *
450005 GTTCAGGGAGTATAAGG-CTCGAATAATCTTCAACAAACGGGTCCGCTCCCTATTCCTTCAGAGA
65 ATTCAGAGAGTAT-AGGACTC----AATCTTCAACAAACGGGTCCGCTCCCTATTCATTCAGAGA
* *
450069 GTATAAGACTCGATCTTCAATAAACGTATCCG
125 GTATAAGACTCAATCTTCAACAAACGTATCCG
* *
450101 CTCCCTATTCCTTCAGAGAG-TAGGACTCAAAACAATCTTCACCGAACTTGTCCGCTCCCTATTC
1 CTCCCTATTCATTCAGAGAGATAGGACTC-AAACAATCTTCAACGAACTTGTCCGCTCCCTATTC
* ** **
450165 CTTCAGAGAGTATAGGACTCAATCTTCAATGAACTTGTCCGCTCCCTATTCATTCAGAGAGTATA
65 ATTCAGAGAGTATAGGACTCAATCTTCAACAAACGGGTCCGCTCCCTATTCATTCAGAGAGTATA
* * * *
450230 GGACTCAATCTTCAACGAACTTGTCCG
130 AGACTCAATCTTCAACAAACGTATCCG
450257 CTCCCTATTCATTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTCCC---TC
1 CTCCCTATTCATTCAGAGAG-ATAGGACTCAAACAATCTTCAACGAACTTGTCCGCTCCCTATTC
*
450315 ATTCAGAGAGTATAGGACTTAATCTTCAACAAACG
65 ATTCAGAGAGTATAGGACTCAATCTTCAACAAACG
450350 AATTTACTTC
Statistics
Matches: 217, Mismatches: 28, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
150 32 0.15
153 26 0.12
156 80 0.37
158 7 0.03
159 10 0.05
160 46 0.21
161 16 0.07
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (156 bp):
CTCCCTATTCATTCAGAGAGATAGGACTCAAACAATCTTCAACGAACTTGTCCGCTCCCTATTCA
TTCAGAGAGTATAGGACTCAATCTTCAACAAACGGGTCCGCTCCCTATTCATTCAGAGAGTATAA
GACTCAATCTTCAACAAACGTATCCG
Found at i:450283 original size:102 final size:102
Alignment explanation
Indices: 449940--450344 Score: 435
Period size: 105 Copynumber: 3.9 Consensus size: 102
449930 AACGTGTCTT
* * *
449940 CTCCCTATTCATTCAGGGAATATAAGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTATTC
1 CTCCCTATTCATTCAGAGAGTATAAGACT----CAATCTTCAACAAACGTGTCCGCTCCCTATTC
* * * **
450005 GTTCAGGGAGTATAAGG-CTCGAATAATCTTCAACAAACGGGTCCG
62 ATTCAGAGAGTAT-AGGACTC----AATCTTCAACGAACTTGTCCG
* * * * *
450050 CTCCCTATTCCTTCAGAGAGTATAAGACTCGATCTTCAATAAACGTATCCGCTCCCTATTCCTTC
1 CTCCCTATTCATTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCCGCTCCCTATTCATTC
*
450115 AGAGAG--TAGGACTCAAAACAATCTTCACCGAACTTGTCCG
66 AGAGAGTATAGGACT-----CAATCTTCAACGAACTTGTCCG
* * ** *
450155 CTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATGAACTTGTCCGCTCCCTATTCATTC
1 CTCCCTATTCATTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCCGCTCCCTATTCATTC
450220 AGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCG
66 AGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCG
* * *
450257 CTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCGCTCCC---TCATTC
1 CTCCCTATTCATTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCCGCTCCCTATTCATTC
*
450319 AGAGAGTATAGGACTTAATCTTCAAC
66 AGAGAGTATAGGACTCAATCTTCAAC
450345 AAACGAATTT
Statistics
Matches: 264, Mismatches: 23, Indels: 27
0.84 0.07 0.09
Matches are distributed among these distances:
99 31 0.12
102 75 0.28
103 3 0.01
104 3 0.01
105 82 0.31
106 36 0.14
107 7 0.03
109 1 0.00
110 26 0.10
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (102 bp):
CTCCCTATTCATTCAGAGAGTATAAGACTCAATCTTCAACAAACGTGTCCGCTCCCTATTCATTC
AGAGAGTATAGGACTCAATCTTCAACGAACTTGTCCG
Found at i:451693 original size:12 final size:11
Alignment explanation
Indices: 451664--451731 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 11
451654 TTGAACCCTC
451664 CTTTTATTTCTCT
1 CTTTT-TTTCT-T
451677 CTTTTTTTCTT
1 CTTTTTTTCTT
*
451688 C-ATTTTTC-T
1 CTTTTTTTCTT
*
451697 CTTTTTTCATTTT
1 CTTTTTT--TCTT
451710 CTATTTTTTCTT
1 CT-TTTTTTCTT
451722 -TTTTTTTCTT
1 CTTTTTTTCTT
451732 TTCGTTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
9 2 0.04
10 19 0.41
11 3 0.07
12 9 0.20
13 8 0.17
14 5 0.11
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (11 bp):
CTTTTTTTCTT
Found at i:451695 original size:22 final size:22
Alignment explanation
Indices: 451670--451727 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
451660 CCTCCTTTTA
451670 TTTCTCTCTTTTTTTCTTC-ATT
1 TTTCTCT-TTTTTTTCTTCTATT
451692 TTTCTCTTTTTTCATT-TTCTATT
1 TTTCTCTTTTTT--TTCTTCTATT
451715 TTT-TCTTTTTTTT
1 TTTCTCTTTTTTTT
451728 TCTTTTCGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
20 2 0.06
21 5 0.15
22 18 0.55
23 8 0.24
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTCTCTTTTTTTTCTTCTATT
Found at i:451711 original size:15 final size:15
Alignment explanation
Indices: 451681--451723 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
451671 TTCTCTCTTT
*
451681 TTTTCTTCATTTTTCTC
1 TTTT-TTCA-TTTTCTA
451698 TTTTTTCATTTTCTA
1 TTTTTTCATTTTCTA
451713 TTTTTTC-TTTT
1 TTTTTTCATTTT
451724 TTTTTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 4 0.16
15 13 0.52
16 4 0.16
17 4 0.16
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTCATTTTCTA
Found at i:451751 original size:26 final size:25
Alignment explanation
Indices: 451676--451794 Score: 76
Period size: 28 Copynumber: 4.8 Consensus size: 25
451666 TTTATTTCTC
451676 TCTTTTTTTC--TTCA-TTTTT-C-
1 TCTTTTTTTCTTTTCATTTTTTCCA
451696 TC-TTTTTTCATTTTCTATTTTTT-C-
1 TCTTTTTTTC-TTTTC-ATTTTTTCCA
* *
451720 TTTTTTTTTCTTTTCGTTTTTTCCA
1 TCTTTTTTTCTTTTCATTTTTTCCA
*
451745 TCATTTTCCTTT-TTTCTCATTTTTTCCT
1 TC-TTTT--TTTCTTT-TCATTTTTTCCA
*
451773 TCTTTTTCTTCTTCTCATTTTT
1 TCTTTTT-TTCTTTTCATTTTT
451795 ATTATTATTT
Statistics
Matches: 79, Mismatches: 6, Indels: 22
0.74 0.06 0.21
Matches are distributed among these distances:
19 7 0.09
20 2 0.03
22 3 0.04
23 7 0.09
24 13 0.16
25 9 0.11
26 14 0.18
27 9 0.11
28 15 0.19
ACGTcount: A:0.06, C:0.20, G:0.01, T:0.73
Consensus pattern (25 bp):
TCTTTTTTTCTTTTCATTTTTTCCA
Found at i:451805 original size:54 final size:54
Alignment explanation
Indices: 451698--451840 Score: 131
Period size: 54 Copynumber: 2.7 Consensus size: 54
451688 CATTTTTCTC
* * *
451698 TTTTTTCA-TTTTCT-ATTTTTT-CTTTTTTT-TTCTTTTCGTTTTTTCCATCA
1 TTTTTCCATTTTTCTCATTTTTTCCTTTTTTTCTTCTTCTCATTTTTTCCATCA
* * *
451748 -TTTTCCTTTTTTCTCATTTTTTCCTTCTTTTTCTTCTTCTCATTTTTAT-TATTA
1 TTTTTCCATTTTTCTCATTTTTTCCTT-TTTTTCTTCTTCTCATTTTT-TCCATCA
*
451802 TTTTTTCATTTTT-TC-TTTTTTCTCTTTTATTTCTTCTTC
1 TTTTTCCATTTTTCTCATTTTTTC-CTTTT-TTTCTTCTTC
451841 AAGCGAAATA
Statistics
Matches: 76, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
49 5 0.07
50 6 0.08
51 7 0.09
52 3 0.04
53 14 0.18
54 30 0.39
55 11 0.14
ACGTcount: A:0.08, C:0.18, G:0.01, T:0.73
Consensus pattern (54 bp):
TTTTTCCATTTTTCTCATTTTTTCCTTTTTTTCTTCTTCTCATTTTTTCCATCA
Found at i:451823 original size:15 final size:15
Alignment explanation
Indices: 451681--451742 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
451671 TTCTCTCTTT
451681 TTTTCTTCATTTTTCTC
1 TTTT-TTCATTTTT-TC
* *
451698 TTTTTTCATTTTCTA
1 TTTTTTCATTTTTTC
*
451713 TTTTTTC-TTTTTTT
1 TTTTTTCATTTTTTC
*
451727 TTCTTTTCGTTTTTTC
1 TT-TTTTCATTTTTTC
451743 CATCATTTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
14 7 0.18
15 13 0.34
16 14 0.37
17 4 0.11
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTCATTTTTTC
Found at i:451836 original size:9 final size:8
Alignment explanation
Indices: 451676--451836 Score: 67
Period size: 9 Copynumber: 18.5 Consensus size: 8
451666 TTTATTTCTC
451676 TCTTTTTT
1 TCTTTTTT
451684 TCTTCATTTT
1 TCTT--TTTT
451694 TCTCTTTTT
1 TCT-TTTTT
*
451703 TC--ATTT
1 TCTTTTTT
451709 TCTATTTTT
1 TCT-TTTTT
451718 TCTTTTTT
1 TCTTTTTT
*
451726 T-TTCTTT
1 TCTTTTTT
451733 TCGTTTTTT
1 TC-TTTTTT
* *
451742 CCATCATTTT
1 TC-T-TTTTT
*
451752 CCTTTTTT
1 TCTTTTTT
451760 CTCATTTTTT
1 -TC-TTTTTT
*
451770 CCTTCTTTT
1 TCTT-TTTT
* *
451779 TCTTCTTC
1 TCTTTTTT
451787 TCATTTTTAT
1 TC-TTTTT-T
*
451797 TATTATTTTT
1 T-CT-TTTTT
*
451807 TCATTTTT
1 TCTTTTTT
451815 TCTTTTTT
1 TCTTTTTT
451823 CTCTTTTATT
1 -TCTTTT-TT
451833 TCTT
1 TCTT
451837 CTTCAAGCGA
Statistics
Matches: 116, Mismatches: 19, Indels: 35
0.68 0.11 0.21
Matches are distributed among these distances:
6 5 0.04
7 6 0.05
8 32 0.28
9 43 0.37
10 25 0.22
11 5 0.04
ACGTcount: A:0.07, C:0.18, G:0.01, T:0.74
Consensus pattern (8 bp):
TCTTTTTT
Found at i:489497 original size:25 final size:24
Alignment explanation
Indices: 489469--489515 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
489459 AACTCAAAAA
* *
489469 AAAATTTGAAGTTCGATTGAAGCCT
1 AAAATTTG-AGCTCAATTGAAGCCT
489494 AAAATTTGAGCTCAATTGAAGC
1 AAAATTTGAGCTCAATTGAAGC
489516 GAAAGAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (24 bp):
AAAATTTGAGCTCAATTGAAGCCT
Found at i:499089 original size:36 final size:36
Alignment explanation
Indices: 499049--499187 Score: 224
Period size: 36 Copynumber: 3.9 Consensus size: 36
499039 ACGATGCTGG
*
499049 ACATTGATACACGAATGTACCAAAGCTAATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
* **
499085 ACATTAATACACGAATGTGTCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
499121 ACATTGATACGCGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
499157 ACATTGATACACGAATGTATCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
499188 ATGGATAAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 93 1.00
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.26
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATATGATA
Found at i:501312 original size:30 final size:29
Alignment explanation
Indices: 501278--501348 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 29
501268 TAAAATATAT
501278 AACTTTTAAAAATTAAAATTTTAG-GTCTTA
1 AACTTTTAAAAATTAAAATTTTAGCG-C-TA
* * * *
501308 AACTTTTCAAAGTTTATATTTTAGCCGCTA
1 AACTTTTAAAAATTAAAATTTTAG-CGCTA
501338 AACTTTTAAAA
1 AACTTTTAAAA
501349 CTTACATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
30 32 0.94
31 1 0.03
32 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.42
Consensus pattern (29 bp):
AACTTTTAAAAATTAAAATTTTAGCGCTA
Found at i:511550 original size:18 final size:18
Alignment explanation
Indices: 511527--511577 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
511517 TATAAATTTG
511527 TCCCGAAGGACCACTATA
1 TCCCGAAGGACCACTATA
* *
511545 TCCCGAAAGACCACTATG
1 TCCCGAAGGACCACTATA
511563 TCCCGAAGGACCACT
1 TCCCGAAGGACCACT
511578 CCTTAAGAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.31, C:0.35, G:0.18, T:0.16
Consensus pattern (18 bp):
TCCCGAAGGACCACTATA
Found at i:518112 original size:36 final size:36
Alignment explanation
Indices: 518072--518219 Score: 233
Period size: 36 Copynumber: 4.1 Consensus size: 36
518062 ACAGTGCTGG
*
518072 ACATTGATACACAAATATACCAAAGCTGATATGATA
1 ACATTGATACACGAATATACCAAAGCTGATATGATA
* *
518108 ACATTGATACACGAATGTATCAAAGCTGATATGATA
1 ACATTGATACACGAATATACCAAAGCTGATATGATA
518144 ACATTGATACACGAATATACCAAAGCTGATATGATA
1 ACATTGATACACGAATATACCAAAGCTGATATGATA
* *
518180 ACATTGATACACGAATGTATCAAAGCTGATAATGGATA
1 ACATTGATACACGAATATACCAAAGCTGAT-AT-GATA
518218 AC
1 AC
518220 TACTCAATTA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 95 0.92
37 2 0.02
38 6 0.06
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (36 bp):
ACATTGATACACGAATATACCAAAGCTGATATGATA
Found at i:518189 original size:72 final size:74
Alignment explanation
Indices: 518072--518219 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 74
518062 ACAGTGCTGG
518072 ACATTGATACACAAATATACCAAAGCTGATATGATAACATTGATACACGAATGTATCAAAGCTGA
1 ACATTGATACACAAATATACCAAAGCTGATATGATAACATTGATACACGAATGTATCAAAGCTGA
518137 T-AT-GATA
66 TAATGGATA
*
518144 ACATTGATACACGAATATACCAAAGCTGATATGATAACATTGATACACGAATGTATCAAAGCTGA
1 ACATTGATACACAAATATACCAAAGCTGATATGATAACATTGATACACGAATGTATCAAAGCTGA
518209 TAATGGATA
66 TAATGGATA
518218 AC
1 AC
518220 TACTCAATTA
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
72 65 0.89
73 2 0.03
74 6 0.08
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (74 bp):
ACATTGATACACAAATATACCAAAGCTGATATGATAACATTGATACACGAATGTATCAAAGCTGA
TAATGGATA
Done.