Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008179.1 Hibiscus syriacus cultivar Beakdansim tig00110776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 726026
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
File 3 of 3
Found at i:522025 original size:76 final size:78
Alignment explanation
Indices: 521929--522081 Score: 220
Period size: 77 Copynumber: 2.0 Consensus size: 78
521919 AATATTTTAA
* * *
521929 AAATAAAAGAATTTCTATATTTACACAATAAAA-AACTCTTAAGAATAATAAAAAATATGTACAA
1 AAATAAAAGAAGTTCAATATTTACACAATAAAAGAACTCTTAAGAATAATAAAAAATATGGACAA
521993 TATTAA-AAAATT
66 TATTAAGAAAATT
* * * **
522005 AAATAAAAGAAGTTCAATATTTGCACAATAAAAGAATTCTTAAGAATAATAGAACTTATGGACAA
1 AAATAAAAGAAGTTCAATATTTACACAATAAAAGAACTCTTAAGAATAATAAAAAATATGGACAA
522070 TATTAAGAAAAT
66 TATTAAGAAAAT
522082 AAAAGAATTC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
76 30 0.45
77 32 0.48
78 5 0.07
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.29
Consensus pattern (78 bp):
AAATAAAAGAAGTTCAATATTTACACAATAAAAGAACTCTTAAGAATAATAAAAAATATGGACAA
TATTAAGAAAATT
Found at i:523716 original size:22 final size:24
Alignment explanation
Indices: 523673--523717 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
523663 TTTTAAATTC
*
523673 TATTTTAATTTTAATTATTATTAA
1 TATTTTAATTTTAATTAGTATTAA
*
523697 TATTTT-A-TTTATTTAGTATTA
1 TATTTTAATTTTAATTAGTATTA
523718 GTTTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (24 bp):
TATTTTAATTTTAATTAGTATTAA
Found at i:524495 original size:21 final size:21
Alignment explanation
Indices: 524471--524510 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
524461 TACAATACTG
* * *
524471 ATTTCGTATATTAATAATTTT
1 ATTTAGTATAATAAAAATTTT
524492 ATTTAGTATAATAAAAATT
1 ATTTAGTATAATAAAAATT
524511 ATTTCATTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTTAGTATAATAAAAATTTT
Found at i:525283 original size:21 final size:21
Alignment explanation
Indices: 525250--525290 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
525240 CACAGCCGTT
** *
525250 TCAGATGGTACCGCAGCCATA
1 TCAGATGACACCGCAACCATA
525271 TCAGATGACACCGCAACCAT
1 TCAGATGACACCGCAACCAT
525291 TTAATATGCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.17
Consensus pattern (21 bp):
TCAGATGACACCGCAACCATA
Found at i:525696 original size:6 final size:6
Alignment explanation
Indices: 525625--525695 Score: 106
Period size: 6 Copynumber: 11.8 Consensus size: 6
525615 TTGCTCCTGA
* *
525625 TGATGA TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGA
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
* *
525673 TGATGA TGATGG TGATGA TGATG
1 TGATGG TGATGG TGATGG TGATG
525696 AGTGGAGGAC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.23, C:0.00, G:0.44, T:0.34
Consensus pattern (6 bp):
TGATGG
Found at i:529104 original size:199 final size:198
Alignment explanation
Indices: 528723--529113 Score: 716
Period size: 199 Copynumber: 2.0 Consensus size: 198
528713 AAACATGAAC
*
528723 CTTCCTTGAAATCTTCGTTATCAGCTCCTCAAGTTATGTTTCTCTTGAAGGATATTTGACATAAT
1 CTTCCTTGAAATCTTCGTTATCAGCTCCTAAAGTTATGTTTCTCTTGAAGGATATTTGACATAAT
528788 GATTTGATGCGAACACGACGCTGATTCCATCTTCCCAAATTTCTCCATATAGTAAACAATAACTG
66 GATTTGATGCGAACACGACGCTGATTCCATCTTCCCAAATTTCTCCATATAGTAAACAATAACTG
528853 AAATAACGTCATTCTGATAGTTGAAAGATTGAGAGTCTTATATATGCAAAAACAATAGCTGAAAT
131 AAATAACGTCATTCTGATAGTTGAAAGATTGAGAGTCTTATATATGCAAAAACAATAGCTGAAAT
528918 ACA
196 ACA
528921 CTTCCTTGAAATCTTCGTTATCAGCTCC-AAGAGTTATGTTTCTCTTGAAGGATATTTTGACATA
1 CTTCCTTGAAATCTTCGTTATCAGCTCCTAA-AGTTATGTTTCTCTTGAAGGATA-TTTGACATA
528985 ATGATTTGATGCGAACACGACGCTGATTCC-TCTTCCC-AATTTCTCCATCATAGTAAACAATAA
64 ATGATTTGATGCGAACACGACGCTGATTCCATCTTCCCAAATTTCTCCAT-ATAGTAAACAATAA
529048 CTGAAATAAGCGTCATTCTGATAGTTGAAAGATTGAGAGTCTTATATATGCAAAAACAATAGCTG
128 CTGAAATAA-CGTCATTCTGATAGTTGAAAGATTGAGAGTCTTATATATGCAAAAACAATAGCTG
529113 A
192 A
529114 CACCTAATTA
Statistics
Matches: 188, Mismatches: 1, Indels: 7
0.96 0.01 0.04
Matches are distributed among these distances:
197 12 0.06
198 81 0.43
199 95 0.51
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (198 bp):
CTTCCTTGAAATCTTCGTTATCAGCTCCTAAAGTTATGTTTCTCTTGAAGGATATTTGACATAAT
GATTTGATGCGAACACGACGCTGATTCCATCTTCCCAAATTTCTCCATATAGTAAACAATAACTG
AAATAACGTCATTCTGATAGTTGAAAGATTGAGAGTCTTATATATGCAAAAACAATAGCTGAAAT
ACA
Found at i:530218 original size:2 final size:2
Alignment explanation
Indices: 530211--530239 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
530201 AGTAATATTA
530211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
530240 ACATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:530889 original size:30 final size:30
Alignment explanation
Indices: 530849--530907 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
530839 GAATCAATAG
*
530849 TTCACACCGGTTTTGCCGGTTTTCAGCCGA
1 TTCACACCGGTTTTGCCGGTTCTCAGCCGA
*
530879 TTCACCCCGGTTTTGCCGGTTCTCAGCCG
1 TTCACACCGGTTTTGCCGGTTCTCAGCCG
530908 GTTCTACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.10, C:0.34, G:0.24, T:0.32
Consensus pattern (30 bp):
TTCACACCGGTTTTGCCGGTTCTCAGCCGA
Found at i:531818 original size:21 final size:21
Alignment explanation
Indices: 531792--531840 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
531782 AGCCAAGTCG
531792 AACTCGAGTATTGTTAAGCTC
1 AACTCGAGTATTGTTAAGCTC
*
531813 AACTCGAGTATTGTTGAGCTC
1 AACTCGAGTATTGTTAAGCTC
531834 AACTCGA
1 AACTCGA
531841 ACTTGAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (21 bp):
AACTCGAGTATTGTTAAGCTC
Found at i:531964 original size:17 final size:16
Alignment explanation
Indices: 531933--531963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
531923 AATATTGAAA
*
531933 CTTGAACTCAAAAAAG
1 CTTGAACTAAAAAAAG
531949 CTTGAACTAAAAAAA
1 CTTGAACTAAAAAAA
531964 ATTTAGAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.10, T:0.19
Consensus pattern (16 bp):
CTTGAACTAAAAAAAG
Found at i:532400 original size:16 final size:16
Alignment explanation
Indices: 532381--532421 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
532371 TTATATATGT
532381 TATGACTTGCTTTGAA
1 TATGACTTGCTTTGAA
532397 TATGACTTGCTTTGAA
1 TATGACTTGCTTTGAA
532413 TATGACTTG
1 TATGACTTG
532422 TAATATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.44
Consensus pattern (16 bp):
TATGACTTGCTTTGAA
Found at i:536224 original size:48 final size:49
Alignment explanation
Indices: 536164--536260 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
536154 ATCAACATGT
536164 CCCAAACAATATCAA-TTTAGCCATATAATTATATTGACGAAACTATCA
1 CCCAAACAATATCAATTTTAGCCATATAATTATATTGACGAAACTATCA
* * * *
536212 CCCAAACGATATCAATTTTAGTCATGTCATTATATTGACGAAACTATCA
1 CCCAAACAATATCAATTTTAGCCATATAATTATATTGACGAAACTATCA
536261 ACTGTATCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 14 0.32
49 30 0.68
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (49 bp):
CCCAAACAATATCAATTTTAGCCATATAATTATATTGACGAAACTATCA
Found at i:537631 original size:16 final size:17
Alignment explanation
Indices: 537610--537642 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
537600 AAGGACATAG
*
537610 CAACGAC-CTTCAATTC
1 CAACGACTCATCAATTC
537626 CAACGACTCATCAATTC
1 CAACGACTCATCAATTC
537643 TCACATGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.36, G:0.06, T:0.24
Consensus pattern (17 bp):
CAACGACTCATCAATTC
Found at i:543746 original size:16 final size:17
Alignment explanation
Indices: 543725--543757 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
543715 AAGGACATAG
*
543725 CAACGAC-CTTCAATTC
1 CAACGACTCATCAATTC
543741 CAACGACTCATCAATTC
1 CAACGACTCATCAATTC
543758 TCACATGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.36, G:0.06, T:0.24
Consensus pattern (17 bp):
CAACGACTCATCAATTC
Found at i:550215 original size:27 final size:27
Alignment explanation
Indices: 550184--550238 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
550174 GAATCCGCTG
550184 CTAGAATATTAACTATTTTATCAGCTC
1 CTAGAATATTAACTATTTTATCAGCTC
550211 CTAGAATATTAACTATTTTATCAGCTC
1 CTAGAATATTAACTATTTTATCAGCTC
550238 C
1 C
550239 ATTATCAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (27 bp):
CTAGAATATTAACTATTTTATCAGCTC
Found at i:552129 original size:11 final size:11
Alignment explanation
Indices: 552099--552130 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
552089 GCCGTTGCAG
*
552099 AGCCACCAACA
1 AGCCACCACCA
552110 AGCCACCACCA
1 AGCCACCACCA
552121 AGCCACCACC
1 AGCCACCACC
552131 GACAGTCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.53, G:0.09, T:0.00
Consensus pattern (11 bp):
AGCCACCACCA
Found at i:558693 original size:64 final size:64
Alignment explanation
Indices: 558577--558719 Score: 175
Period size: 64 Copynumber: 2.2 Consensus size: 64
558567 TTTCAAAGTG
* *
558577 ATGCACCGATGCACCA-ATCCATGCATCGATGCACCATGGATTAAATTGAACATCGAATGCATTT
1 ATGCATCGATGCA-CATA-CCATGCATCGATGCACCATGGACTAAATTGAACATCGAATGCATTT
558641 A
64 A
* **
558642 ATGCATTGATGCACATACCATGCATCGATGCACTC-T-GACTATTTTGAAACATCGAATGCATTT
1 ATGCATCGATGCACATACCATGCATCGATGCAC-CATGGACTAAATTG-AACATCGAATGCATTT
*
558705 T
64 A
558706 ATGCATCGATGCAC
1 ATGCATCGATGCAC
558720 TCTTAGTGCA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
63 7 0.10
64 48 0.71
65 13 0.19
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (64 bp):
ATGCATCGATGCACATACCATGCATCGATGCACCATGGACTAAATTGAACATCGAATGCATTTA
Found at i:561552 original size:21 final size:22
Alignment explanation
Indices: 561526--561582 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 22
561516 ACCCCCTTGC
*
561526 TATGTATTGATACA-CCTTGAA
1 TATGTATCGATACATCCTTGAA
*
561547 TGTGTATCGATACATTCCTTGAA
1 TATGTATCGATACA-TCCTTGAA
561570 TATGTATCGATAC
1 TATGTATCGATAC
561583 CCCTCGATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 12 0.39
23 19 0.61
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (22 bp):
TATGTATCGATACATCCTTGAA
Found at i:562032 original size:19 final size:20
Alignment explanation
Indices: 562004--562048 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
561994 ATAAAAAATG
*
562004 TTTTGTTTTAAAT-TGATGT
1 TTTTGATTTAAATATGATGT
* *
562023 TTTTGATTTAATTATGTTGT
1 TTTTGATTTAAATATGATGT
562043 TTTTGA
1 TTTTGA
562049 AAACTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.20, C:0.00, G:0.16, T:0.64
Consensus pattern (20 bp):
TTTTGATTTAAATATGATGT
Found at i:563520 original size:21 final size:21
Alignment explanation
Indices: 563487--563526 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
563477 TTTGGATGTT
* *
563487 TGTTTGTTTTTGAATGTTTAA
1 TGTTTGGTATTGAATGTTTAA
*
563508 TGTTTGGTATTGATTGTTT
1 TGTTTGGTATTGAATGTTT
563527 GACTTTTCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (21 bp):
TGTTTGGTATTGAATGTTTAA
Found at i:564371 original size:15 final size:15
Alignment explanation
Indices: 564351--564407 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
564341 CCGGATGTTA
*
564351 CGGGTACTCGGTAAT
1 CGGGTACCCGGTAAT
**
564366 CGGGTACCCGGATTTT
1 CGGGTACCCGG-TAAT
*
564382 GTGGGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
564398 CGGGTACCCG
1 CGGGTACCCG
564408 ATACCCGATT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 19 0.58
16 4 0.12
17 10 0.30
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.25
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:564375 original size:32 final size:32
Alignment explanation
Indices: 564339--564407 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
564329 CCGTGTCCCG
*
564339 ACCCGGATGTTACGGGTACTCGGTAATCGGGT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGGT
* **
564371 ACCCGGATTTTGTGGGTACCCGGTAATCGGGT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGGT
564403 ACCCG
1 ACCCG
564408 ATACCCGATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (32 bp):
ACCCGGATGTTACGGGTACCCGGTAATCGGGT
Found at i:570394 original size:67 final size:67
Alignment explanation
Indices: 570253--570395 Score: 180
Period size: 67 Copynumber: 2.1 Consensus size: 67
570243 TGTTTTCTAA
* * * ***
570253 AAACAAAATTTTGTCTCTTTTGAGATAATTTCTTTTTAAGAAGAAATCTTTGAGTTTTTTTCTTT
1 AAACAAAATTTTGTCTCTTTTGAGATAACTTCTTTTGAAGAAGAAATCTCTGAGTCGGTTTCTTT
570318 GG
66 GG
* **
570320 AAACAAAATTTTGTCTCTTTTGAGATAACTTCTTTTGAAGCA-TCATCTCTGAGTCGGTTTCTTT
1 AAACAAAATTTTGTCTCTTTTGAGATAACTTCTTTTGAAGAAGAAATCTCTGAGTCGGTTTCTTT
*
570384 TG
66 GG
570386 AAACCAAAAT
1 AAA-CAAAAT
570396 CCTTAGATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
66 20 0.31
67 45 0.69
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (67 bp):
AAACAAAATTTTGTCTCTTTTGAGATAACTTCTTTTGAAGAAGAAATCTCTGAGTCGGTTTCTTT
GG
Found at i:570623 original size:125 final size:125
Alignment explanation
Indices: 570396--570820 Score: 591
Period size: 125 Copynumber: 3.4 Consensus size: 125
570386 AAACCAAAAT
* * * * *
570396 CCTTAGATGACCAAGATTCATCATAGTATGAGCAATGTCATCCCTGACCGGATCTCCTCATCACG
1 CCTTAAATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCCGACCAGATCTCCTCATCACG
* * * * *
570461 TAGGACCCGTGTCAACCCAGATAAGCA-ACCGTCCTCATCACGTAGGAACCTTATTATCAC
66 TAGGAGCTGTGTCAACCCAGATAACCAGA-CGTCCTCATCACGTAGGAACCGTGTTATCAC
* * * *
570521 CCTTAAATGGACAAAATTCATCATAGTATGAGCAGTGTCATCCCCGACCAGATCTCTTCATCGCG
1 CCTTAAATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCCGACCAGATCTCCTCATCACG
* *
570586 TAGGAGCTGTGTTAACCCAGATAACCAGACGTACTCATCACGTAGGAACCGTGTTATCAC
66 TAGGAGCTGTGTCAACCCAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCAC
* * *
570646 CCTTAGATGGCCAAGATTCATCATAGTATGAGTAGTGTCATCCCCGACCAGATATCCTCATCACG
1 CCTTAAATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCCGACCAGATCTCCTCATCACG
* * *
570711 TAGGAGCTGTGTCAACCCAGATAATCAGCCGTCCTCATCACGTAGGAACCGTGTTATCGC
66 TAGGAGCTGTGTCAACCCAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCAC
570771 CCTTCCTAAAGATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCC
1 CC-T--T-AA-ATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCC
570821 AAATCAAACA
Statistics
Matches: 264, Mismatches: 30, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
125 222 0.84
126 2 0.01
128 1 0.00
129 1 0.00
130 38 0.14
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (125 bp):
CCTTAAATGGCCAAGATTCATCATAGTATGAGCAGTGTCATCCCCGACCAGATCTCCTCATCACG
TAGGAGCTGTGTCAACCCAGATAACCAGACGTCCTCATCACGTAGGAACCGTGTTATCAC
Found at i:570971 original size:3 final size:3
Alignment explanation
Indices: 570963--571045 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
570953 GGTTTAAAAA
570963 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
571011 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
571046 CATGTTTACA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:578387 original size:2 final size:2
Alignment explanation
Indices: 578376--578423 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
578366 TATCTTATGT
*
578376 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
578417 AA TA TA T
1 TA TA TA T
578424 TAAAAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:585910 original size:7 final size:7
Alignment explanation
Indices: 585898--585922 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
585888 TAGCAAGTGT
585898 CAGGTGC
1 CAGGTGC
585905 CAGGTGC
1 CAGGTGC
585912 CAGGTGC
1 CAGGTGC
585919 CAGG
1 CAGG
585923 AATAGGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.28, G:0.44, T:0.12
Consensus pattern (7 bp):
CAGGTGC
Found at i:593642 original size:22 final size:22
Alignment explanation
Indices: 593614--593660 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
593604 GACCTAAAAT
593614 AATGAAGGTATAGTTTGTAGAG
1 AATGAAGGTATAGTTTGTAGAG
593636 AATGAAGGTATAGTTTGTAGAG
1 AATGAAGGTATAGTTTGTAGAG
593658 AAT
1 AAT
593661 TTTTGGAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32
Consensus pattern (22 bp):
AATGAAGGTATAGTTTGTAGAG
Found at i:608627 original size:14 final size:14
Alignment explanation
Indices: 608610--608636 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
608600 ATATTAAATA
608610 ATAAATATAATTAT
1 ATAAATATAATTAT
608624 ATAAATATAATTA
1 ATAAATATAATTA
608637 AAAAATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATATAATTAT
Found at i:612330 original size:19 final size:19
Alignment explanation
Indices: 612306--612342 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
612296 ATGACCAACA
*
612306 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
612325 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
612343 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:612414 original size:20 final size:20
Alignment explanation
Indices: 612368--612414 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
612358 GTTTCCAGAT
* *
612368 TCGCAAAGCGATTTTGACTA
1 TCGCAACGCGATTCTGACTA
*
612388 TTGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTA
612408 TCGCAAC
1 TCGCAAC
612415 ACAAAATTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTA
Found at i:612586 original size:17 final size:17
Alignment explanation
Indices: 612564--612598 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
612554 TATCCATTCC
612564 TATATCCAACGACATCT
1 TATATCCAACGACATCT
612581 TATATCCAACGACATCT
1 TATATCCAACGACATCT
612598 T
1 T
612599 TCCCCATCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (17 bp):
TATATCCAACGACATCT
Found at i:613303 original size:24 final size:24
Alignment explanation
Indices: 613256--613305 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
613246 TCGAAATTTA
*
613256 ATCTTGCTCAATACCCTGACTTTG
1 ATCTTGCTCAATACCCGGACTTTG
* * *
613280 ATCTTGGTCAATACTCGGATTTTG
1 ATCTTGCTCAATACCCGGACTTTG
613304 AT
1 AT
613306 GATGTTTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (24 bp):
ATCTTGCTCAATACCCGGACTTTG
Found at i:613521 original size:14 final size:14
Alignment explanation
Indices: 613492--613528 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
613482 AGAAGAAAAA
613492 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
613507 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
613521 GAAGAAAA
1 GAAGAAAA
613529 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:615587 original size:18 final size:18
Alignment explanation
Indices: 615564--615598 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
615554 AGCAAAAGGC
*
615564 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
615582 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
615599 CAACCAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:615825 original size:34 final size:34
Alignment explanation
Indices: 615777--615914 Score: 134
Period size: 34 Copynumber: 3.9 Consensus size: 34
615767 TCATTTGAAT
*
615777 ATCGCAACGTGAATTTGACTATCGCAACGCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCAAAA
* * *
615811 ATCGCAACGCGAATTTGATTATCGCAACGTGAATTTGATT
1 ATCGCAACGCGAATTTGACTATCGCAACG-CAA----A-A
*
615851 ATCGCAACGAGAATTTGACTATCGCAACG-AGAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCA-AAA
* * *
615885 ATCGCAAAGCGTATTAGACTATCGCAACGC
1 ATCGCAACGCGAATTTGACTATCGCAACGC
615915 GAATTAACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 15
0.77 0.10 0.14
Matches are distributed among these distances:
34 52 0.61
35 3 0.04
38 1 0.01
39 2 0.02
40 27 0.32
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (34 bp):
ATCGCAACGCGAATTTGACTATCGCAACGCAAAA
Found at i:615859 original size:74 final size:74
Alignment explanation
Indices: 615769--615919 Score: 223
Period size: 74 Copynumber: 2.0 Consensus size: 74
615759 TTACACATTC
* * * *
615769 ATTTGAATATCGCAACGTGAATTTGACTATCGCAACGCA-AAAATCGCAACGCGAATTTGATTAT
1 ATTTGAATATCGCAACGAGAATTTGACTATCGCAACG-AGAAAATCGCAAAGCGAATTAGACTAT
*
615833 CGCAACGTGA
65 CGCAACGCGA
* *
615843 ATTTGATTATCGCAACGAGAATTTGACTATCGCAACGAGAAAATCGCAAAGCGTATTAGACTATC
1 ATTTGAATATCGCAACGAGAATTTGACTATCGCAACGAGAAAATCGCAAAGCGAATTAGACTATC
615908 GCAACGCGA
66 GCAACGCGA
615917 ATT
1 ATT
615920 AACTTTCGCA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 1 0.01
74 68 0.99
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (74 bp):
ATTTGAATATCGCAACGAGAATTTGACTATCGCAACGAGAAAATCGCAAAGCGAATTAGACTATC
GCAACGCGA
Found at i:615880 original size:20 final size:20
Alignment explanation
Indices: 615769--615883 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
615759 TTACACATTC
* *
615769 ATTTGAATATCGCAACGTGA
1 ATTTGACTATCGCAACGAGA
615789 ATTTGACTATCGCAACGCA-A
1 ATTTGACTATCGCAACG-AGA
*
615809 A----A--ATCGCAACGCGA
1 ATTTGACTATCGCAACGAGA
* *
615823 ATTTGATTATCGCAACGTGA
1 ATTTGACTATCGCAACGAGA
*
615843 ATTTGATTATCGCAACGAGA
1 ATTTGACTATCGCAACGAGA
615863 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGAGA
615883 A
1 A
615884 AATCGCAAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 16
0.79 0.06 0.16
Matches are distributed among these distances:
14 11 0.14
16 1 0.01
18 1 0.01
20 68 0.84
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGAGA
Found at i:615889 original size:54 final size:53
Alignment explanation
Indices: 615831--615932 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
615821 GAATTTGATT
* * * * *
615831 ATCGCAACGTGAATTTGATTATCGCAACGAGAATTTGACTATCGCAACGAGAAA
1 ATCGCAAAGCGAATTAGACTATCGCAACGAGAA-TTAACTATCGCAACGAGAAA
* * *
615885 ATCGCAAAGCGTATTAGACTATCGCAACGCGAATTAACTTTCGCAACG
1 ATCGCAAAGCGAATTAGACTATCGCAACGAGAATTAACTATCGCAACG
615933 CGAATTGACT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 13 0.32
54 27 0.68
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (53 bp):
ATCGCAAAGCGAATTAGACTATCGCAACGAGAATTAACTATCGCAACGAGAAA
Found at i:615930 original size:19 final size:19
Alignment explanation
Indices: 615886--615947 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
615876 AACGAGAAAA
* * *
615886 TCGCAAAGCGTATTAGACTA
1 TCGCAACGCGAATTA-ACTT
615906 TCGCAACGCGAATTAACTT
1 TCGCAACGCGAATTAACTT
*
615925 TCGCAACGCGAATTGACTT
1 TCGCAACGCGAATTAACTT
615944 TCGC
1 TCGC
615948 GTTGCGATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
19 25 0.66
20 13 0.34
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (19 bp):
TCGCAACGCGAATTAACTT
Found at i:615954 original size:19 final size:19
Alignment explanation
Indices: 615932--616014 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 19
615922 CTTTCGCAAC
615932 GCGA-ATTGACTTTCGCGTT
1 GCGATATTGA-TTTCGCGTT
*
615951 GCGATTTTGGATTTCGCGTT
1 GCGATATT-GATTTCGCGTT
* *
615971 GCGATTTTGGATTTCGCATT
1 GCGATATT-GATTTCGCGTT
* *
615991 GCGATTTTGAGTTTAGCGTT
1 GCGATATTGA-TTTCGCGTT
616011 GCGA
1 GCGA
616015 AAGTGTACCT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
19 6 0.11
20 49 0.86
21 2 0.04
ACGTcount: A:0.14, C:0.16, G:0.29, T:0.41
Consensus pattern (19 bp):
GCGATATTGATTTCGCGTT
Found at i:615967 original size:20 final size:20
Alignment explanation
Indices: 615942--616014 Score: 112
Period size: 20 Copynumber: 3.6 Consensus size: 20
615932 GCGAATTGAC
615942 TTTCGCGTTGCGATTTTGGA
1 TTTCGCGTTGCGATTTTGGA
615962 TTTCGCGTTGCGATTTTGGA
1 TTTCGCGTTGCGATTTTGGA
*
615982 TTTCGCATTGCGATTTT-GA
1 TTTCGCGTTGCGATTTTGGA
*
616001 GTTTAGCGTTGCGA
1 -TTTCGCGTTGCGA
616015 AAGTGTACCT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
19 2 0.04
20 47 0.96
ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTGGA
Found at i:617308 original size:20 final size:20
Alignment explanation
Indices: 617285--617340 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
617275 TCTGAAACTT
617285 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
*
617305 AAAATCACAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
617325 ACTATCGCAACGCGAA
1 AAAATCGCAACACGAA
617341 TTTGACTATC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.52, C:0.23, G:0.14, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:617398 original size:14 final size:14
Alignment explanation
Indices: 617379--617408 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
617369 CGCGAAATGC
617379 AAATCGCAACGAGA
1 AAATCGCAACGAGA
*
617393 AAATCGCAACGCGA
1 AAATCGCAACGAGA
617407 AA
1 AA
617409 CTAAAATCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.23, G:0.20, T:0.07
Consensus pattern (14 bp):
AAATCGCAACGAGA
Found at i:617416 original size:33 final size:33
Alignment explanation
Indices: 617328--617418 Score: 103
Period size: 33 Copynumber: 2.7 Consensus size: 33
617318 GAAAATGACT
* ** * *
617328 ATCGCAACGCGAATTTGACTATCACAACGAGATA
1 ATCGCAACGCGAA-ATGAAAATCGCAACGAGAAA
*
617362 ATCGCAACGCGAAATGCAAATCGCAACGAGAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGAGAAA
617395 ATCGCAACGCGAAACT-AAAATCGC
1 ATCGCAACGCGAAA-TGAAAATCGC
617419 GTTGCGATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 35 0.71
34 14 0.29
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGAGAAA
Found at i:617840 original size:22 final size:22
Alignment explanation
Indices: 617813--617857 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
617803 GGAGATAGAT
617813 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCGCCGGAGATGGGGAC
*
617835 GGATTTCGTCGGAGATGGGGAC
1 GGATTTCGCCGGAGATGGGGAC
617857 G
1 G
617858 AATGTTGCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.16, G:0.47, T:0.20
Consensus pattern (22 bp):
GGATTTCGCCGGAGATGGGGAC
Found at i:618116 original size:20 final size:19
Alignment explanation
Indices: 618093--618138 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
618083 AGAAACTGAT
* *
618093 TTGCGATACTGGAGATCGCG
1 TTGCGAT-CTAGAGATCGCA
*
618113 TTGCGATTTAGAGATCGCA
1 TTGCGATCTAGAGATCGCA
618132 TTGCGAT
1 TTGCGAT
618139 TTTGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (19 bp):
TTGCGATCTAGAGATCGCA
Found at i:618128 original size:19 final size:19
Alignment explanation
Indices: 618104--618140 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
618094 TGCGATACTG
*
618104 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
618123 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
618141 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:624492 original size:25 final size:25
Alignment explanation
Indices: 624436--624492 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
624426 TATACTTAAA
* ** *
624436 TAATTTTCCACCGATCTTATTTCCC
1 TAATTTTCCACCCATAATATCTCCC
**
624461 TTTTTTTCCACCCATAATATCTCCC
1 TAATTTTCCACCCATAATATCTCCC
624486 TAATTTT
1 TAATTTT
624493 GTCTAAAATA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (25 bp):
TAATTTTCCACCCATAATATCTCCC
Found at i:625514 original size:36 final size:36
Alignment explanation
Indices: 625465--625534 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
625455 TAGGTTTATA
* **
625465 AGGAATTATCAGCTTGATCGGTGCTGAACCTGCATG
1 AGGAATTACCAGCTTGATCGAAGCTGAACCTGCATG
625501 AGGAATTACCAGCTTGATCGAAGCTGAACCTGCA
1 AGGAATTACCAGCTTGATCGAAGCTGAACCTGCA
625535 GAGACTTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (36 bp):
AGGAATTACCAGCTTGATCGAAGCTGAACCTGCATG
Found at i:626266 original size:17 final size:17
Alignment explanation
Indices: 626240--626273 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
626230 CGAAAAACAT
626240 AAAATATGACTTTTTGG
1 AAAATATGACTTTTTGG
*
626257 AAAATTTGACTTTTTGG
1 AAAATATGACTTTTTGG
626274 TCAAAGTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (17 bp):
AAAATATGACTTTTTGG
Found at i:627069 original size:47 final size:47
Alignment explanation
Indices: 627000--627285 Score: 484
Period size: 47 Copynumber: 6.1 Consensus size: 47
626990 AATATATATA
* * *
627000 TATGGAATCCTTTCATGCCTTAATGAATCCTTTCATGCATTTTCAAT
1 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
627047 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
1 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
* *
627094 TATGCCAAT-CTTTCATGCCTTAATGCATCCTTTCATGCATTTTCAAT
1 TATGGC-ATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
627141 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
1 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
* *
627188 TATGTCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTCAAT
1 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
*
627235 TATGGCATCCTTGCATGCCTTAATGCATCATTTCATGCATTTTCAAT
1 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
627282 TATG
1 TATG
627286 AATTCGATTT
Statistics
Matches: 225, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 221 0.98
48 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.43
Consensus pattern (47 bp):
TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTCAAT
Found at i:627788 original size:20 final size:21
Alignment explanation
Indices: 627763--627818 Score: 78
Period size: 22 Copynumber: 2.7 Consensus size: 21
627753 TGATGTTGCC
627763 TGGTATCGATACCCT-TACCA
1 TGGTATCGATACCCTATACCA
* *
627783 TGGTATCGATACTACTATACTA
1 TGGTATCGATAC-CCTATACCA
627805 TGGTATCGATACCC
1 TGGTATCGATACCC
627819 CCTTAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.39
21 3 0.10
22 16 0.52
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (21 bp):
TGGTATCGATACCCTATACCA
Found at i:632313 original size:36 final size:36
Alignment explanation
Indices: 632245--632315 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
632235 GCTTTAGGTC
** *
632245 CATAAGGAATTACCAACTTGATCAGTGCTGAACCTA
1 CATAAGGAATTACCAACTTGATCAAAGATGAACCTA
632281 CATAAGGAATTACCAGA-TTGATCAAAGATGAACCT
1 CATAAGGAATTACCA-ACTTGATCAAAGATGAACCT
632316 GAAGAGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 30 0.97
37 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (36 bp):
CATAAGGAATTACCAACTTGATCAAAGATGAACCTA
Found at i:632912 original size:13 final size:14
Alignment explanation
Indices: 632893--632933 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
632883 AATTAGTTGC
632893 ACTTAAATTAATAT
1 ACTTAAATTAATAT
*
632907 -CTTAAATGAAT-T
1 ACTTAAATTAATAT
632919 ACTTAAATTACATAT
1 ACTTAAATTA-ATAT
632934 GTATATTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 1 0.05
13 18 0.82
14 2 0.09
15 1 0.05
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (14 bp):
ACTTAAATTAATAT
Found at i:646828 original size:18 final size:18
Alignment explanation
Indices: 646798--646835 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
646788 TGAAAAAAGG
*
646798 ATCTTAGATTCTCTTTCC
1 ATCTTAGATTCTCTCTCC
646816 ATCTT-GATCTCTCTCTCC
1 ATCTTAGAT-TCTCTCTCC
646834 AT
1 AT
646836 AAAGTAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.16, C:0.32, G:0.05, T:0.47
Consensus pattern (18 bp):
ATCTTAGATTCTCTCTCC
Found at i:649219 original size:2 final size:2
Alignment explanation
Indices: 649212--649288 Score: 154
Period size: 2 Copynumber: 38.5 Consensus size: 2
649202 TTACCTTCTT
649212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
649254 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
649289 CCCCCTTAAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 75 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:654031 original size:30 final size:31
Alignment explanation
Indices: 653974--654043 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
653964 CAATCATTCA
* * *
653974 CAACTTTTCCAAAATTGCTAAATTGGTCCCC
1 CAACTTTTCAAAAATTACTAAAATGGTCCCC
654005 CAACTTTTCAAAAATTAC-AAAATGGTCCCC
1 CAACTTTTCAAAAATTACTAAAATGGTCCCC
* *
654035 AAAATTTTC
1 CAACTTTTC
654044 TAAGGCTTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (31 bp):
CAACTTTTCAAAAATTACTAAAATGGTCCCC
Found at i:654174 original size:10 final size:10
Alignment explanation
Indices: 654159--654186 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
654149 TATGTTTTTA
654159 TGATTTTGCT
1 TGATTTTGCT
654169 TGATTTTGCT
1 TGATTTTGCT
654179 TGATTTTG
1 TGATTTTG
654187 ATTTGATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.07, G:0.21, T:0.61
Consensus pattern (10 bp):
TGATTTTGCT
Found at i:656689 original size:10 final size:10
Alignment explanation
Indices: 656674--656750 Score: 63
Period size: 10 Copynumber: 7.8 Consensus size: 10
656664 GCATCACTCA
656674 TCTTTTTTTC
1 TCTTTTTTTC
656684 TCTTTTTTT-
1 TCTTTTTTTC
656693 TCATTTTTTT-
1 TC-TTTTTTTC
*
656703 TCATTTTTTC
1 TCTTTTTTTC
*
656713 TTCTTTTCTTTT
1 -TCTTTT-TTTC
*
656725 TCTTTTTTTT
1 TCTTTTTTTC
*
656735 TC-TTCTTTC
1 TCTTTTTTTC
656744 T-TTTTTT
1 TCTTTTTT
656751 CTTAGCTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
9 18 0.32
10 24 0.43
11 11 0.20
12 3 0.05
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (10 bp):
TCTTTTTTTC
Found at i:656692 original size:11 final size:10
Alignment explanation
Indices: 656676--656738 Score: 81
Period size: 11 Copynumber: 6.0 Consensus size: 10
656666 ATCACTCATC
656676 TTTTTTTCTCT
1 TTTTTTTCT-T
*
656687 TTTTTTTCAT
1 TTTTTTTCTT
656697 TTTTTTTCATT
1 TTTTTTTC-TT
*
656708 TTTTCTTCTT
1 TTTTTTTCTT
656718 TTCTTTTTCTT
1 TT-TTTTTCTT
656729 TTTTTTTCTT
1 TTTTTTTCTT
656739 CTTTCTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
10 21 0.46
11 25 0.54
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:656699 original size:8 final size:7
Alignment explanation
Indices: 656677--656749 Score: 51
Period size: 8 Copynumber: 9.9 Consensus size: 7
656667 TCACTCATCT
656677 TTTTTTC
1 TTTTTTC
656684 TCTTTTT-
1 T-TTTTTC
*
656691 TTTCATT-
1 TTT-TTTC
656698 TTTTTTC
1 TTTTTTC
656705 ATTTTTTC
1 -TTTTTTC
656713 TTCTTTTC
1 TT-TTTTC
*
656721 TTTTTCTTT
1 -TTTT-TTC
656730 TTTTTTC
1 TTTTTTC
*
656737 TTCTTTC
1 TTTTTTC
656744 TTTTTT
1 TTTTTT
656750 TCTTAGCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
6 4 0.08
7 22 0.42
8 23 0.43
9 4 0.08
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:656724 original size:24 final size:23
Alignment explanation
Indices: 656697--656751 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
656687 TTTTTTTCAT
656697 TTTTTTTCATTTTTTCTTCTTTTC
1 TTTTTTTCATTTTTTCTTC-TTTC
*
656721 TTTTTCTT-TTTTTTTCTTCTTTC
1 TTTTT-TTCATTTTTTCTTCTTTC
656744 TTTTTTTC
1 TTTTTTTC
656752 TTAGCTCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 2 0.07
23 9 0.32
24 15 0.54
25 2 0.07
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTTTTCATTTTTTCTTCTTTC
Found at i:656732 original size:32 final size:32
Alignment explanation
Indices: 656671--656753 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 32
656661 TAAGCATCAC
656671 TCATCTTTTT-TTCTCTTT-TTTTTCATTTTTTT
1 TCAT-TTTTTCTTCT-TTTCTTTTTCATTTTTTT
*
656703 TCATTTTTTCTTCTTTTCTTTTTCTTTTTTTT
1 TCATTTTTTCTTCTTTTCTTTTTCATTTTTTT
* *
656735 TC-TTCTTTCTTTTTTTCTT
1 TCATTTTTTCTTCTTTTCTT
656754 AGCTCTTATG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
31 23 0.50
32 23 0.50
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (32 bp):
TCATTTTTTCTTCTTTTCTTTTTCATTTTTTT
Found at i:656737 original size:21 final size:21
Alignment explanation
Indices: 656678--656748 Score: 81
Period size: 21 Copynumber: 3.2 Consensus size: 21
656668 CACTCATCTT
*
656678 TTTTTCTCTTTTTTTTCATTT-
1 TTTTTCT-TTTTTTTTCTTTTC
*
656699 TTTTTCATTTTTTCTTCTTTTC
1 TTTTTC-TTTTTTTTTCTTTTC
656721 TTTTTCTTTTTTTTTCTTCTTTC
1 TTTTTCTTTTTTTTTC-T-TTTC
656744 TTTTT
1 TTTTT
656749 TTCTTAGCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
21 26 0.60
22 8 0.19
23 9 0.21
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTTTTTTCTTTTC
Found at i:659795 original size:61 final size:61
Alignment explanation
Indices: 659688--659809 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 61
659678 GTAGTGCTAA
* * *
659688 ACCTACACTAAGCTTATGCCATAGTGCTAATCCAGATATGACACATAAGGTCGTGCCCACC
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCCAGACATGACACATAAGGTCGTACCCACC
* *
659749 ACCTACACTAAGCTTACGCCATAGTGCTAATCCGGACATGATACATAAGGTCGTACCCACC
1 ACCTACACTAAGCTTACGCCATAGTGCTAATCCAGACATGACACATAAGGTCGTACCCACC
659810 TTCCCGCACT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (61 bp):
ACCTACACTAAGCTTACGCCATAGTGCTAATCCAGACATGACACATAAGGTCGTACCCACC
Found at i:660167 original size:24 final size:24
Alignment explanation
Indices: 660135--660183 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
660125 AGTCGTCCTG
660135 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
*
660159 ATGATGTATAAAACTTCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
660183 A
1 A
660184 ATGTCATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (24 bp):
ATGATGTATAAAACATCTATGTAC
Found at i:660754 original size:30 final size:30
Alignment explanation
Indices: 660720--660790 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
660710 AGCCATTTAC
* * *
660720 AACTTTTCTAAAATTGTTGAATTGG-CCCCT
1 AACTTTTCTAAAATT-ATGAAATGGTCCCCA
*
660750 AACTTTTCAAAAATTATGAAATGGTCCCCA
1 AACTTTTCTAAAATTATGAAATGGTCCCCA
*
660780 AAATTTTCTAA
1 AACTTTTCTAA
660791 GGCTTGTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (30 bp):
AACTTTTCTAAAATTATGAAATGGTCCCCA
Found at i:661812 original size:29 final size:29
Alignment explanation
Indices: 661776--661849 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
661766 GAACTTTTTC
*
661776 AAAATTTATACTTTGGTCACCAAACTTTA
1 AAAATTTATAATTTGGTCACCAAACTTTA
661805 AAAATTTATAATTTGGTCACCAAACTTTA
1 AAAATTTATAATTTGGTCACCAAACTTTA
661834 AAAATTTATAATTTGG
1 AAAATTTATAATTTGG
661850 CCACTCACTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (29 bp):
AAAATTTATAATTTGGTCACCAAACTTTA
Found at i:666266 original size:32 final size:32
Alignment explanation
Indices: 666229--666294 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
666219 CTACAATCGT
*
666229 TGTTGTCGGTTTCTTCCAATTTTTCTATTTTA
1 TGTTGTCGGTTTCTTCCAATTTTTCTAATTTA
666261 TGTTGTCGGTTTCTTCCAATTTTTCTAATTTA
1 TGTTGTCGGTTTCTTCCAATTTTTCTAATTTA
666293 TG
1 TG
666295 AATAAAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.14, C:0.15, G:0.14, T:0.58
Consensus pattern (32 bp):
TGTTGTCGGTTTCTTCCAATTTTTCTAATTTA
Found at i:668942 original size:28 final size:27
Alignment explanation
Indices: 668911--668966 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
668901 ATTCCAGGGC
*
668911 TTAGAGGTACTTTAGATCATTTTACACT
1 TTAGAGGCA-TTTAGATCATTTTACACT
* * *
668939 TTAGGGGCATTTTGGTCATTTTACACT
1 TTAGAGGCATTTAGATCATTTTACACT
668966 T
1 T
668967 AAGGGATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (27 bp):
TTAGAGGCATTTAGATCATTTTACACT
Found at i:670300 original size:45 final size:45
Alignment explanation
Indices: 670244--670500 Score: 414
Period size: 45 Copynumber: 5.8 Consensus size: 45
670234 TATAAAATTT
*
670244 CTTATCATTTA-TCCTATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTATTCC-ATAAGCTCGTAAGCTTATTTTACCAATATA
670289 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAA-ATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
670333 CTTACCA-TTATTCCATAAGCTCGTAAGTTTATTTTACCAATATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
670377 CTTACCATTTATTCTATAAGCTCGTAAGCTTATTTTACCAATACA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
670422 CTTACCATTTATTCCATAAGCTTGTAAGCTTATTTTACCAATATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
670467 CTTGCCA-TTATTCCATAAGTTCGTAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
670501 GCGTGATTAC
Statistics
Matches: 198, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
43 32 0.16
44 45 0.23
45 118 0.60
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.41
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:670408 original size:88 final size:90
Alignment explanation
Indices: 670244--670500 Score: 414
Period size: 88 Copynumber: 2.9 Consensus size: 90
670234 TATAAAATTT
*
670244 CTTATCATTTA-TCCTATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCCATAA
1 CTTACCATTTATTCC-ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCCATAA
*
670308 GCTCGTAAGCTTATTTTACCAA-ATA
65 GCTCGTAAGCTTATTTTACCAATACA
* *
670333 CTTACCA-TTATTCCATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCTATAAG
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCCATAAG
670397 CTCGTAAGCTTATTTTACCAATACA
66 CTCGTAAGCTTATTTTACCAATACA
* *
670422 CTTACCATTTATTCCATAAGCTTGTAAGCTTATTTTACCAATATACTTGCCA-TTATTCCATAAG
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCCATAAG
*
670486 TTCGTAAGCTTATTT
66 CTCGTAAGCTTATTT
670501 GCGTGATTAC
Statistics
Matches: 156, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
88 72 0.46
89 43 0.28
90 41 0.26
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.41
Consensus pattern (90 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCCATAAG
CTCGTAAGCTTATTTTACCAATACA
Found at i:670738 original size:61 final size:61
Alignment explanation
Indices: 670617--670738 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
670607 GTAGTGCTAA
* * ** * * *
670617 ACCTGCACTAAGCTTACGCCATAGTGCTAATCCGGATATGACACATAAGGTCGTGCCCACC
1 ACCTACACTAAGCTTACACCATAGTGCTAATCCAAACATGACACATAAGGCCGTACCCACC
* * *
670678 ACCTACACTAAGCTTACACTATAGTGCTAATCCAAACATGATACATAAGGCCGTATCCACC
1 ACCTACACTAAGCTTACACCATAGTGCTAATCCAAACATGACACATAAGGCCGTACCCACC
670739 TTCCCGCACT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (61 bp):
ACCTACACTAAGCTTACACCATAGTGCTAATCCAAACATGACACATAAGGCCGTACCCACC
Found at i:672427 original size:37 final size:37
Alignment explanation
Indices: 672386--672483 Score: 144
Period size: 37 Copynumber: 2.6 Consensus size: 37
672376 AACTAACATA
*
672386 CTTATCCTTATCATCATTCAAATCATATCATATGAAC
1 CTTATCCTTATCATCATTCAAATCATATCACATGAAC
*
672423 CTTATCCTTATCATCATTCAAATCATATCACCTGAAC
1 CTTATCCTTATCATCATTCAAATCATATCACATGAAC
*
672460 CTTAT-CTTCATCCATAATTCAAAT
1 CTTATCCTT-AT-CATCATTCAAAT
672484 ATGAACAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
36 3 0.05
37 42 0.75
38 11 0.20
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.38
Consensus pattern (37 bp):
CTTATCCTTATCATCATTCAAATCATATCACATGAAC
Found at i:672716 original size:30 final size:29
Alignment explanation
Indices: 672682--672755 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 29
672672 AAAATTACAT
** *
672682 TTTGGTCCCTAAATTTTTCAAAGTTTATAC
1 TTTGGTCCCTAAATTTAACAAA-TTTATAA
672712 TTTGGTCACC-AAACTTTAACAAATTTATAA
1 TTTGGTC-CCTAAA-TTTAACAAATTTATAA
*
672742 TTTGGTCACTAAAT
1 TTTGGTCCCTAAAT
672756 AAATCCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
29 2 0.05
30 26 0.70
31 9 0.24
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.42
Consensus pattern (29 bp):
TTTGGTCCCTAAATTTAACAAATTTATAA
Found at i:674411 original size:6 final size:6
Alignment explanation
Indices: 674395--674474 Score: 60
Period size: 6 Copynumber: 13.2 Consensus size: 6
674385 TTTTTCATTC
* * *
674395 TTTTC- TTTTCT TTTTCTAT ATTTTCT CTTT-A TTTTCT TTTTCT TTATCT
1 TTTTCT TTTTCT TTTTC--T -TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
674444 TTTTCT TTTTCT TCTTT-T TTTT-T GTTTTCT T
1 TTTTCT TTTTCT T-TTTCT TTTTCT -TTTTCT T
674475 CTTTTCTGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
5 12 0.20
6 38 0.62
7 5 0.08
8 1 0.02
9 5 0.08
ACGTcount: A:0.05, C:0.15, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:674438 original size:15 final size:15
Alignment explanation
Indices: 674400--674488 Score: 59
Period size: 15 Copynumber: 6.3 Consensus size: 15
674390 CATTCTTTTC
*
674400 TTTTCTTTTTCTATA
1 TTTTCTTTTTCTTTA
674415 TTTTC----TCTTTA
1 TTTTCTTTTTCTTTA
674426 TTTTCTTTTTCTTTA
1 TTTTCTTTTTCTTTA
674441 ---TCTTTTTCTTT-
1 TTTTCTTTTTCTTTA
* *
674452 TTCTTCTTTTTTTTTG
1 TT-TTCTTTTTCTTTA
*
674468 TTTTCTTCTTTTCTGTA
1 TTTTC-T-TTTTCTTTA
674485 TTTT
1 TTTT
674489 TCATATATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
11 10 0.17
12 11 0.19
15 24 0.41
16 3 0.05
17 10 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTTCTTTTTCTTTA
Found at i:674464 original size:18 final size:18
Alignment explanation
Indices: 674415--674479 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
674405 TTTTTCTATA
*
674415 TTTTC-TCTTTATTTTCT
1 TTTTCTTCTTTTTTTTCT
*
674432 TTTTCTT-TATCTTTTTCT
1 TTTTCTTCT-TTTTTTTCT
674450 TTTTCTTCTTTTTTTT-T
1 TTTTCTTCTTTTTTTTCT
674467 GTTTTCTTCTTTT
1 -TTTTCTTCTTTT
674480 CTGTATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 7 0.17
18 33 0.80
19 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTCTTCTTTTTTTTCT
Found at i:674476 original size:27 final size:26
Alignment explanation
Indices: 674386--674479 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 26
674376 TTTATCATTT
*
674386 TTTTCATTCTTTTCTTTTCTTTTTCTATA
1 TTTTC-TTC-TTT-TTTTCTTTTTCTTTA
674415 TTTTC-TCTTTATTTTCTTTTTCTTTA
1 TTTTCTTCTTT-TTTTCTTTTTCTTTA
* *
674441 TCTTT-TTCTTTTTCTTCTTTTTTTTTG
1 T-TTTCTTCTTTTT-TTCTTTTTCTTTA
674468 TTTTCTTCTTTT
1 TTTTCTTCTTTT
674480 CTGTATTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
26 23 0.40
27 29 0.51
29 5 0.09
ACGTcount: A:0.05, C:0.16, G:0.01, T:0.78
Consensus pattern (26 bp):
TTTTCTTCTTTTTTTCTTTTTCTTTA
Found at i:674990 original size:179 final size:179
Alignment explanation
Indices: 674690--675033 Score: 652
Period size: 179 Copynumber: 1.9 Consensus size: 179
674680 TACAAACCAC
674690 CTCCAATTAATCATTGTAAAATTGAAATACTCGATTCATCAAGTCTATGAATGCTGCCAGAGCAT
1 CTCCAATTAATCATTGTAAAATTGAAATACTCGATTCATCAAGTCTATGAATGCTGCCAGAGCAT
674755 TTGTCAAACCAAACAGCATTACTACGAACTCATAGTATTCATACCGTTTTCTGAAAACTATCTTT
66 TTGTCAAACCAAACAGCATTACTACGAACTCATAGTATTCATACCGTTTTCTGAAAACTATCTTT
674820 AGAACATCTTCCTTAAGTTAATCAAACAAGTCATCTTCCTTGATAGTTA
131 AGAACATCTTCCTTAAGTTAATCAAACAAGTCATCTTCCTTGATAGTTA
* *
674869 CTCCAATTAATCATTGTAAAATTGAAATACTCGATTCATCAAGTCTATTAATGCTGTCAGAGCAT
1 CTCCAATTAATCATTGTAAAATTGAAATACTCGATTCATCAAGTCTATGAATGCTGCCAGAGCAT
* *
674934 TTGTCAAACCAAACAGCATTACTACGAACTCGTAGTATTCATATCGTTTTCTGAAAACTATCTTT
66 TTGTCAAACCAAACAGCATTACTACGAACTCATAGTATTCATACCGTTTTCTGAAAACTATCTTT
674999 AGAACATCTTCCTTAAGTTAATCAAACAAGTCATC
131 AGAACATCTTCCTTAAGTTAATCAAACAAGTCATC
675034 AATCATCGGA
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
179 161 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (179 bp):
CTCCAATTAATCATTGTAAAATTGAAATACTCGATTCATCAAGTCTATGAATGCTGCCAGAGCAT
TTGTCAAACCAAACAGCATTACTACGAACTCATAGTATTCATACCGTTTTCTGAAAACTATCTTT
AGAACATCTTCCTTAAGTTAATCAAACAAGTCATCTTCCTTGATAGTTA
Found at i:677353 original size:45 final size:45
Alignment explanation
Indices: 677297--677553 Score: 405
Period size: 45 Copynumber: 5.8 Consensus size: 45
677287 TATAAAATTT
* * *
677297 CTTATCATTTA-TCCTATAAGCTAGTAAGTTTATTTTACCAATATA
1 CTTACCATTTATTCC-ATAAGCTCGTAAGCTTATTTTACCAATATA
677342 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAA-ATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
677386 CTTATCA-TTATTCCATAAGCTCGTAAGTTTATTTTACCAATATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
677430 CTTACCATTTATTCCATAAGCTAGTAAGTTTATTTTACCAATACA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
677475 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
677520 CTTACCA-TTATTCCATAAGCTCGTAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
677554 GCATGGTTAC
Statistics
Matches: 198, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
43 32 0.16
44 45 0.23
45 118 0.60
46 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:677463 original size:88 final size:89
Alignment explanation
Indices: 677297--677553 Score: 412
Period size: 88 Copynumber: 2.9 Consensus size: 89
677287 TATAAAATTT
*
677297 CTTATCATT-TATCCTATAAGCTAGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAA
1 CTTATCATTAT-TCC-ATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAA
*
677361 GCTCGTAAGCTTATTTTACCAA-ATA
64 GCTCGTAAGCTTATTTTACCAATACA
677386 CTTATCATTATTCCATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAAGC
1 CTTATCATTATTCCATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAAGC
* *
677451 TAGTAAGTTTATTTTACCAATACA
66 TCGTAAGCTTATTTTACCAATACA
* *
677475 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA-TTATTCCATAAG
1 CTTATCA-TTATTCCATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAAG
677539 CTCGTAAGCTTATTT
65 CTCGTAAGCTTATTT
677554 GCATGGTTAC
Statistics
Matches: 157, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
88 68 0.43
89 45 0.29
90 44 0.28
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (89 bp):
CTTATCATTATTCCATAAGCTCGTAAGTTTATTTTACCAATATACTTACCATTTATTCCATAAGC
TCGTAAGCTTATTTTACCAATACA
Found at i:677777 original size:61 final size:61
Alignment explanation
Indices: 677670--677784 Score: 167
Period size: 61 Copynumber: 1.9 Consensus size: 61
677660 GTAGTGCTAA
* * * * *
677670 ACCTCCACTAAGCTTACGCCATAGTGCTAATCCGGATATGACACATAAGGTCGTGCCCACC
1 ACCTACACTAAGCTTACACCATAGTACTAATCCAGACATGACACATAAGGTCGTGCCCACC
* *
677731 ACCTACACTAAGCTTACACTATAGTACTAATCCAGACATGATACATAAGGTCGT
1 ACCTACACTAAGCTTACACCATAGTACTAATCCAGACATGACACATAAGGTCGT
677785 ATCCACCTTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (61 bp):
ACCTACACTAAGCTTACACCATAGTACTAATCCAGACATGACACATAAGGTCGTGCCCACC
Found at i:679722 original size:30 final size:30
Alignment explanation
Indices: 679682--679760 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 30
679672 CTTTTTAAAA
* *
679682 TTATATTTTGGTC-CTTAAACTTT-TCAAAGT
1 TTATAATTTGGTCAC-TAAACTTTAACAAA-T
*
679712 TTATACTTTGGTCACTAAACTTTAACAAAT
1 TTATAATTTGGTCACTAAACTTTAACAAAT
679742 TTATAATTTGGTCACTAAA
1 TTATAATTTGGTCACTAAA
679761 TAAATCCATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 39 0.89
31 5 0.11
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (30 bp):
TTATAATTTGGTCACTAAACTTTAACAAAT
Found at i:685896 original size:19 final size:16
Alignment explanation
Indices: 685863--685941 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 16
685853 TATCTTATAA
685863 TTATTATTTATTTATT
1 TTATTATTTATTTATT
685879 TTATTATTTTATCCTTATCT
1 TTATTA-TTTAT--TTAT-T
* * *
685899 TTCATT-TTAAATGATT
1 TT-ATTATTTATTTATT
*
685915 TATATTTAATTATTTATT
1 T-TA-TTATTTATTTATT
685933 TTATTATTT
1 TTATTATTT
685942 TATTCTTATC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
16 14 0.30
17 13 0.28
18 7 0.15
19 7 0.15
20 3 0.06
21 3 0.06
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (16 bp):
TTATTATTTATTTATT
Found at i:685931 original size:41 final size:41
Alignment explanation
Indices: 685845--685929 Score: 102
Period size: 41 Copynumber: 2.0 Consensus size: 41
685835 TATCTTTACC
* *
685845 TTTATCCTTATCTTATAATTATTATTTATTTATTTTATTAT
1 TTTATCCTTATCTTATAATTATTAATGATTTATTTTATTAT
*
685886 TTTATCCTTATCTT-TCATT-TTAAATGATTTATATTTAATTAT
1 TTTATCCTTATCTTATAATTATT-AATGATTTAT-TTT-ATTAT
685928 TT
1 TT
685930 ATTTTATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
39 2 0.05
40 12 0.32
41 17 0.45
42 7 0.18
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (41 bp):
TTTATCCTTATCTTATAATTATTAATGATTTATTTTATTAT
Found at i:685956 original size:14 final size:13
Alignment explanation
Indices: 685873--685964 Score: 55
Period size: 14 Copynumber: 6.8 Consensus size: 13
685863 TTATTATTTA
685873 TTTATTTTATTAT
1 TTTATTTTATTAT
* *
685886 TTTATCCTTA-TCT
1 TTTAT-TTTATTAT
* *
685899 TTCATTTTAAATGAT
1 TTTATTTT--ATTAT
*
685914 TTATATTTAATTA-
1 TT-TATTTTATTAT
685927 TTTATTTTATTAT
1 TTTATTTTATTAT
685940 TTTATTCTTATCT-T
1 TTTATT-TTAT-TAT
685954 TTTATCTTTAT
1 TTTAT-TTTAT
685965 CTGAAATTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
12 11 0.18
13 19 0.32
14 21 0.35
15 5 0.08
16 4 0.07
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.67
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:690289 original size:6 final size:6
Alignment explanation
Indices: 690280--690323 Score: 79
Period size: 6 Copynumber: 7.3 Consensus size: 6
690270 GAGTGATTCT
*
690280 GATGAA GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC GA
1 GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC GA
690324 AGAAATGGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.36, C:0.14, G:0.34, T:0.16
Consensus pattern (6 bp):
GATGAC
Found at i:696337 original size:24 final size:24
Alignment explanation
Indices: 696310--696359 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
696300 ATAAAAAACC
696310 AAAATAAA-CTTAAACATACCATTA
1 AAAATAAAGCTTAAACAT-CCATTA
*
696334 AAAATAAAGTTTAAACATCCATTA
1 AAAATAAAGCTTAAACATCCATTA
696358 AA
1 AA
696360 CCAACCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAAGCTTAAACATCCATTA
Found at i:697536 original size:22 final size:22
Alignment explanation
Indices: 697495--697538 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
697485 TCATTTAGTA
697495 CACTCTTTTCTTTTCTTTTTTT
1 CACTCTTTTCTTTTCTTTTTTT
697517 CACT-TTTTCCTTCTTCTTTTTT
1 CACTCTTTT-CTT-TTCTTTTTT
697539 AAGCTGCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 7 0.35
23 9 0.45
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (22 bp):
CACTCTTTTCTTTTCTTTTTTT
Found at i:701906 original size:24 final size:24
Alignment explanation
Indices: 701879--701928 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
701869 ATAAAGAACC
701879 AAAATAAA-CTTAAACATACCATTA
1 AAAATAAAGCTTAAACAT-CCATTA
*
701903 AAAATAAAGTTTAAACATCCATTA
1 AAAATAAAGCTTAAACATCCATTA
701927 AA
1 AA
701929 CCAACCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAAGCTTAAACATCCATTA
Found at i:703171 original size:22 final size:22
Alignment explanation
Indices: 703145--703186 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
703135 ACTTTTCGGA
* *
703145 TATTTTCTTTTATTAAATTTCT
1 TATTTTATTTCATTAAATTTCT
*
703167 TATTTTATTTCATTTAATTT
1 TATTTTATTTCATTAAATTT
703187 TCAGTATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (22 bp):
TATTTTATTTCATTAAATTTCT
Found at i:706265 original size:31 final size:30
Alignment explanation
Indices: 706227--706294 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 30
706217 AAAAAAGTAA
* *
706227 AAAAAAAATTGTTCTTTGTTTCG-AATAGCAG
1 AAAAAAAA-TGTTCATTGTTTCGAAACAGC-G
706258 AAAAAAAATGTTCATTGTTTCGAAACAGCG
1 AAAAAAAATGTTCATTGTTTCGAAACAGCG
706288 AAAAAAA
1 AAAAAAA
706295 GAAAAAAGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
30 21 0.62
31 13 0.38
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.28
Consensus pattern (30 bp):
AAAAAAAATGTTCATTGTTTCGAAACAGCG
Found at i:708026 original size:4 final size:4
Alignment explanation
Indices: 708019--708052 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
708009 TTTTATCTCA
*
708019 ATTT ATTTT ATTT ATTT ATTT ATTT GTTT ATTT A
1 ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT A
708053 ATCTTTATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:708787 original size:20 final size:20
Alignment explanation
Indices: 708762--708800 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
708752 AAGATGGTAC
708762 ATGTGATTAGCATGAGTATT
1 ATGTGATTAGCATGAGTATT
*
708782 ATGTGATTGGCATGAGTAT
1 ATGTGATTAGCATGAGTAT
708801 AATATATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.38
Consensus pattern (20 bp):
ATGTGATTAGCATGAGTATT
Found at i:712846 original size:13 final size:13
Alignment explanation
Indices: 712828--712854 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
712818 ATTGCTCGTG
712828 GTGAAACATTTGT
1 GTGAAACATTTGT
712841 GTGAAACATTTGT
1 GTGAAACATTTGT
712854 G
1 G
712855 AGCAAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (13 bp):
GTGAAACATTTGT
Found at i:719965 original size:14 final size:14
Alignment explanation
Indices: 719948--719974 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
719938 AAATCAAGTT
719948 TTGAAATTAGAAAA
1 TTGAAATTAGAAAA
719962 TTGAAATTAGAAA
1 TTGAAATTAGAAA
719975 TTACTCCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.30
Consensus pattern (14 bp):
TTGAAATTAGAAAA
Found at i:722291 original size:19 final size:20
Alignment explanation
Indices: 722244--722304 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 20
722234 ATTCCCCTGT
722244 GGGGTGAATCGGTTCCCCTTCAAA
1 GGGG-GAATCGGTT-CCC-TC-AA
722268 GGGGGAATCGGTTCCCTC-A
1 GGGGGAATCGGTTCCCTCAA
* *
722287 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
722305 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 17 0.49
21 2 0.06
22 3 0.09
23 9 0.26
24 4 0.11
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.23
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAA
Done.