Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008182.1 Hibiscus syriacus cultivar Beakdansim tig00110782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1042344
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 6
Found at i:659428 original size:21 final size:20
Alignment explanation
Indices: 659399--659437 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
659389 TTTATAACAT
659399 ATATATTTATAAATAATTTTA
1 ATATATTTAT-AATAATTTTA
* *
659420 ATATTTTTATTATAATTT
1 ATATATTTATAATAATTT
659438 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATTTATAATAATTTTA
Found at i:669529 original size:33 final size:33
Alignment explanation
Indices: 669487--669549 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
669477 GGCGACATCG
*
669487 AAGGTCTGCTGCAACAGACGTGGTGGATGCTCC
1 AAGGTCTGCTGCAACAGACGCGGTGGATGCTCC
* *
669520 AAGGTCTGCTGCATCAGATGCGGTGGATGC
1 AAGGTCTGCTGCAACAGACGCGGTGGATGC
669550 ATCCTTTGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.21, C:0.22, G:0.35, T:0.22
Consensus pattern (33 bp):
AAGGTCTGCTGCAACAGACGCGGTGGATGCTCC
Found at i:681356 original size:191 final size:191
Alignment explanation
Indices: 681026--681388 Score: 609
Period size: 191 Copynumber: 1.9 Consensus size: 191
681016 CTCATCTAAG
* *
681026 AAACAATTTTAAGGCTAGCTACTCTTAATTGCATTTGGGACCCTTCATATTTTTATTTTTGACAT
1 AAACAATTTTAAGGCTAGCTACTCTTAATTGCATTTGGGACCCTTCATAGTTTTATTTTGGACAT
681091 ATTAAACATGTAATAGATATGTAATGTTGAAACTCATATGTTTTATAAAAATAAGTAACAAAGAA
66 ATTAAACATGTAATAGATATGTAATGTTGAAACTCATATGTTTTATAAAAATAAGTAACAAAGAA
681156 AGCGATTTAGAAGTTTGTCGTAAATTTAATATTTTGGAATTCGTAGGAACAGTTTATTTAA
131 AGCGATTTAGAAGTTTGTCGTAAATTTAATATTTTGGAATTCGTAGGAACAGTTTATTTAA
* *
681217 AAACAATTTTAAGGCTTGCTACTCTTAATTGCATTTGGGACCCTTCATAGTTTTATTTTGGACGT
1 AAACAATTTTAAGGCTAGCTACTCTTAATTGCATTTGGGACCCTTCATAGTTTTATTTTGGACAT
* * * * * *
681282 ATTAGACATGTAATAGATATGTATTGTTGAAACTCATCTGTTTTATAAAATTAAGTTATAAAGAA
66 ATTAAACATGTAATAGATATGTAATGTTGAAACTCATATGTTTTATAAAAATAAGTAACAAAGAA
** *
681347 ATTGATTTAGAAGTTTGTTGTAAATTTAATATTTTGGAATTC
131 AGCGATTTAGAAGTTTGTCGTAAATTTAATATTTTGGAATTC
681389 AAAATCATAT
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
191 159 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (191 bp):
AAACAATTTTAAGGCTAGCTACTCTTAATTGCATTTGGGACCCTTCATAGTTTTATTTTGGACAT
ATTAAACATGTAATAGATATGTAATGTTGAAACTCATATGTTTTATAAAAATAAGTAACAAAGAA
AGCGATTTAGAAGTTTGTCGTAAATTTAATATTTTGGAATTCGTAGGAACAGTTTATTTAA
Found at i:682360 original size:24 final size:24
Alignment explanation
Indices: 682323--682391 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
682313 GCGGAGATAT
*
682323 CAGAAATCAAAACAGAATTCAAAA
1 CAGAAATCAGAACAGAATTCAAAA
* * * * * *
682347 CATATATCAGAACAAAATCCAGAT
1 CAGAAATCAGAACAGAATTCAAAA
682371 CAGAAATCAGAACAGAATTCA
1 CAGAAATCAGAACAGAATTCA
682392 GGTCATGTGT
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.55, C:0.19, G:0.10, T:0.16
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAAAA
Found at i:682392 original size:12 final size:12
Alignment explanation
Indices: 682323--682392 Score: 52
Period size: 12 Copynumber: 5.8 Consensus size: 12
682313 GCGGAGATAT
* *
682323 CAGAAATCAAAA
1 CAGAATTCAGAA
*
682335 CAGAATTCAAAA
1 CAGAATTCAGAA
*
682347 CA-TATATCAGAA
1 CAGAAT-TCAGAA
* * *
682359 CAAAATCCAGAT
1 CAGAATTCAGAA
*
682371 CAGAAATCAGAA
1 CAGAATTCAGAA
682383 CAGAATTCAG
1 CAGAATTCAG
682393 GTCATGTGTC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
11 2 0.04
12 41 0.91
13 2 0.04
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:704221 original size:30 final size:30
Alignment explanation
Indices: 704140--704222 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
704130 TAAGTCTTAC
704140 GTGT-TAAAAGTACTGACGTGATATTATCAT
1 GTGTCTAAAA-TACTGACGTGATATTATCAT
*
704170 ATGTCTAAACA-ACTGACGTGATATTATCAT
1 GTGTCTAAA-ATACTGACGTGATATTATCAT
* *
704200 GTGTCTAAAATATTGATGTGATA
1 GTGTCTAAAATACTGACGTGATA
704223 GTAACATATC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 1 0.02
30 40 0.87
31 4 0.09
32 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (30 bp):
GTGTCTAAAATACTGACGTGATATTATCAT
Found at i:709796 original size:28 final size:26
Alignment explanation
Indices: 709754--709807 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 26
709744 ACTAAATGTG
709754 TAGTTTACCTAAAATGTAATAGCTCATA
1 TAGTTTACCTAAAATGT--TAGCTCATA
*
709782 TAGTTTACCTCAAATGTTAGCTCATA
1 TAGTTTACCTAAAATGTTAGCTCATA
709808 AAATTATGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.36
28 16 0.64
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (26 bp):
TAGTTTACCTAAAATGTTAGCTCATA
Found at i:713286 original size:19 final size:19
Alignment explanation
Indices: 713262--713300 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
713252 TACTCAACTT
*
713262 TTTTTCACTCCTATTTTAG
1 TTTTTCACTCATATTTTAG
713281 TTTTTCACTCATATTTTAG
1 TTTTTCACTCATATTTTAG
713300 T
1 T
713301 AATTGAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTCACTCATATTTTAG
Found at i:714926 original size:5 final size:5
Alignment explanation
Indices: 714916--714968 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
714906 AACAGTCAAC
* *
714916 GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG
714965 GGTC
1 GGTC
714969 AGACCGGTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 32 0.80
7 8 0.20
ACGTcount: A:0.08, C:0.23, G:0.51, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:714930 original size:17 final size:17
Alignment explanation
Indices: 714910--714969 Score: 75
Period size: 17 Copynumber: 3.2 Consensus size: 17
714900 AAAGTCAACA
714910 GTCAACGGTCGGGTCGG
1 GTCAACGGTCGGGTCGG
714927 GTCAACGGTCGGGTCGGGTCGG
1 GTCAA----C-GGTCGGGTCGG
714949 GTCAACGGTCGGGTCGG
1 GTCAACGGTCGGGTCGG
714966 GTCA
1 GTCA
714970 GACCGGTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
17 20 0.53
18 1 0.03
21 1 0.03
22 16 0.42
ACGTcount: A:0.12, C:0.23, G:0.47, T:0.18
Consensus pattern (17 bp):
GTCAACGGTCGGGTCGG
Found at i:714943 original size:22 final size:22
Alignment explanation
Indices: 714916--714968 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
714906 AACAGTCAAC
714916 GGTCGGGTCGGGTCAACGGTCG
1 GGTCGGGTCGGGTCAACGGTCG
714938 GGTCGGGTCGGGTCAACGGTCG
1 GGTCGGGTCGGGTCAACGGTCG
714960 GGTCGGGTC
1 GGTCGGGTC
714969 AGACCGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.08, C:0.23, G:0.51, T:0.19
Consensus pattern (22 bp):
GGTCGGGTCGGGTCAACGGTCG
Found at i:714983 original size:9 final size:9
Alignment explanation
Indices: 714965--715042 Score: 75
Period size: 9 Copynumber: 8.3 Consensus size: 9
714955 GGTCGGGTCG
*
714965 GGTCAGACC
1 GGTCAAACC
714974 GGTCAAACC
1 GGTCAAACC
*
714983 GGTTCAGACC
1 GG-TCAAACC
*
714993 GATCAAACC
1 GGTCAAACC
*
715002 GGTTCGAACC
1 GG-TCAAACC
*
715012 GGTTGAAACC
1 GG-TCAAACC
715022 GGTCAAACC
1 GGTCAAACC
*
715031 GGTTAAACC
1 GGTCAAACC
715040 GGT
1 GGT
715043 TTCCAGCAGC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
9 34 0.60
10 23 0.40
ACGTcount: A:0.28, C:0.28, G:0.27, T:0.17
Consensus pattern (9 bp):
GGTCAAACC
Found at i:714989 original size:19 final size:19
Alignment explanation
Indices: 714967--715043 Score: 86
Period size: 19 Copynumber: 4.1 Consensus size: 19
714957 TCGGGTCGGG
714967 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
714986 TCAGACCGATCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
715005 TC-GAACCGGTTGAAACCGG-
1 TCAG-ACCGG-TCAAACCGGT
* *
715024 TCAAACCGGTTAAACCGGT
1 TCAGACCGGTCAAACCGGT
715043 T
1 T
715044 TCCAGCAGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
18 9 0.18
19 32 0.65
20 8 0.16
ACGTcount: A:0.29, C:0.29, G:0.25, T:0.18
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:722175 original size:7 final size:7
Alignment explanation
Indices: 722163--722192 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
722153 GTCAAAGAAA
722163 GTCAACG
1 GTCAACG
722170 GTCAACG
1 GTCAACG
722177 GTCAAC-
1 GTCAACG
722183 GTCAACG
1 GTCAACG
722190 GTC
1 GTC
722193 GGGTCGAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:722188 original size:13 final size:14
Alignment explanation
Indices: 722163--722192 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
722153 GTCAAAGAAA
722163 GTCAACGGTCAACG
1 GTCAACGGTCAACG
722177 GTCAAC-GTCAACG
1 GTCAACGGTCAACG
722190 GTC
1 GTC
722193 GGGTCGAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:722211 original size:22 final size:22
Alignment explanation
Indices: 722183--722238 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
722173 AACGGTCAAC
*
722183 GTCAACGGTCGGGTCGAGTCGT
1 GTCAACGGTCGGGTCGAGTCGG
*
722205 GTCAACGGTCGGGTCGGGTCGG
1 GTCAACGGTCGGGTCGAGTCGG
722227 GTCAACGGTCGG
1 GTCAACGGTCGG
722239 TCGGGTCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.12, C:0.23, G:0.45, T:0.20
Consensus pattern (22 bp):
GTCAACGGTCGGGTCGAGTCGG
Found at i:722254 original size:9 final size:9
Alignment explanation
Indices: 722242--722340 Score: 74
Period size: 9 Copynumber: 10.3 Consensus size: 9
722232 CGGTCGGTCG
*
722242 GGTCAGACC
1 GGTCAAACC
722251 GGTCAAACC
1 GGTCAAACC
*
722260 GGGTTCAGACC
1 -GG-TCAAACC
722271 GGTCAAACC
1 GGTCAAACC
*
722280 GGTTCGAACC
1 GG-TCAAACC
*
722290 GGTTGAAACC
1 GG-TCAAACC
722300 GGTCAAACC
1 GGTCAAACC
722309 GGTCAGAA-C
1 GGTCA-AACC
*
722318 GGTTGAAAACC
1 GG-T-CAAACC
*
722329 GGTTAAACC
1 GGTCAAACC
722338 GGT
1 GGT
722341 TTCCGCAGCC
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
9 38 0.51
10 26 0.35
11 10 0.14
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:722269 original size:20 final size:19
Alignment explanation
Indices: 722240--722313 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
722230 AACGGTCGGT
722240 CGGGTCAGACCGGTCAAAC
1 CGGGTCAGACCGGTCAAAC
722259 CGGGTTCAGACCGGTCAAAC
1 CGGG-TCAGACCGGTCAAAC
* *
722279 CGGTTC-GAACCGGTTGAAAC
1 CGGGTCAG-ACCGG-TCAAAC
*
722299 C-GGTCAAACCGGTCA
1 CGGGTCAGACCGGTCA
722314 GAACGGTTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 3 0.07
19 19 0.41
20 24 0.52
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (19 bp):
CGGGTCAGACCGGTCAAAC
Found at i:722293 original size:29 final size:28
Alignment explanation
Indices: 722243--722340 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 28
722233 GGTCGGTCGG
* *
722243 GTCAGACCGGTCAAACCGGGTTCAGACCG
1 GTCAAACCGGTCAAACC-GGTTAAGACCG
*
722272 GTCAAACCGGTTCGAACCGGTTGAA-ACCG
1 GTCAAACCGG-TCAAACCGGTT-AAGACCG
*
722301 GTCAAACCGGTCAGAA-CGGTTGAAAACCG
1 GTCAAACCGGTCA-AACCGGTT-AAGACCG
*
722330 GTTAAACCGGT
1 GTCAAACCGGT
722341 TTCCGCAGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
28 10 0.17
29 43 0.72
30 7 0.12
ACGTcount: A:0.29, C:0.27, G:0.29, T:0.16
Consensus pattern (28 bp):
GTCAAACCGGTCAAACCGGTTAAGACCG
Found at i:722310 original size:38 final size:37
Alignment explanation
Indices: 722248--722340 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 37
722238 GTCGGGTCAG
* *
722248 ACCGGTCAAACCGGGTTCAGACCGGTCA-AACCGGTTCG-A
1 ACCGGTTAAACC-GG-TCAAACCGGTCAGAA-CGGTT-GAA
722287 ACCGGTTGAAACCGGTCAAACCGGTCAGAACGGTTGAAA
1 ACCGGTT-AAACCGGTCAAACCGGTCAGAACGGTTG-AA
722326 ACCGGTTAAACCGGT
1 ACCGGTTAAACCGGT
722341 TTCCGCAGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
37 1 0.02
38 24 0.50
39 18 0.38
40 5 0.10
ACGTcount: A:0.29, C:0.27, G:0.28, T:0.16
Consensus pattern (37 bp):
ACCGGTTAAACCGGTCAAACCGGTCAGAACGGTTGAA
Found at i:723577 original size:21 final size:21
Alignment explanation
Indices: 723551--723591 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
723541 TTTACCGTGA
*
723551 TTGCGGTCGTCGCGGGCGCTG
1 TTGCGGTCGTCGCGGACGCTG
723572 TTGCGGTCGTCGCGGACGCT
1 TTGCGGTCGTCGCGGACGCT
723592 ATTACGGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.29, G:0.44, T:0.24
Consensus pattern (21 bp):
TTGCGGTCGTCGCGGACGCTG
Found at i:724215 original size:18 final size:18
Alignment explanation
Indices: 724192--724227 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
724182 TATGATTGAG
724192 GCAATAGTAAAATTTTCA
1 GCAATAGTAAAATTTTCA
724210 GCAATAGTAAAATTTTCA
1 GCAATAGTAAAATTTTCA
724228 ATGTATACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (18 bp):
GCAATAGTAAAATTTTCA
Found at i:724750 original size:64 final size:64
Alignment explanation
Indices: 724671--724803 Score: 266
Period size: 64 Copynumber: 2.1 Consensus size: 64
724661 TCCATAGTAG
724671 TTGTTATCATGATTATTGCAAAATAAGAGTATTTTCTATAAAAGAACTTCCCAACCATTATATC
1 TTGTTATCATGATTATTGCAAAATAAGAGTATTTTCTATAAAAGAACTTCCCAACCATTATATC
724735 TTGTTATCATGATTATTGCAAAATAAGAGTATTTTCTATAAAAGAACTTCCCAACCATTATATC
1 TTGTTATCATGATTATTGCAAAATAAGAGTATTTTCTATAAAAGAACTTCCCAACCATTATATC
724799 TTGTT
1 TTGTT
724804 TTAGTGGGAG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 69 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (64 bp):
TTGTTATCATGATTATTGCAAAATAAGAGTATTTTCTATAAAAGAACTTCCCAACCATTATATC
Found at i:725997 original size:27 final size:25
Alignment explanation
Indices: 725967--726017 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
725957 TTTATTATGC
725967 ATGTGTTTGATTCAAGTATTATTTTTG
1 ATGTGTTTGATT-AAGT-TTATTTTTG
* *
725994 ATGTGTTTTATTACGTTTATTTTT
1 ATGTGTTTGATTAAGTTTATTTTT
726018 TTATGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.20, C:0.04, G:0.16, T:0.61
Consensus pattern (25 bp):
ATGTGTTTGATTAAGTTTATTTTTG
Found at i:729989 original size:57 final size:57
Alignment explanation
Indices: 729928--730036 Score: 200
Period size: 57 Copynumber: 1.9 Consensus size: 57
729918 GGCCCTCTTC
*
729928 ATTCCTTTATGTTGTTGGTTTATATCTCCATATAGGTAGTAGGTCACGATCCTGTGT
1 ATTCCTTTATGTTGTTGGTTCATATCTCCATATAGGTAGTAGGTCACGATCCTGTGT
*
729985 ATTCCTTTATGTTGTTGGTTCCTATCTCCATATAGGTAGTAGGTCACGATCC
1 ATTCCTTTATGTTGTTGGTTCATATCTCCATATAGGTAGTAGGTCACGATCC
730037 ATCCTTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.42
Consensus pattern (57 bp):
ATTCCTTTATGTTGTTGGTTCATATCTCCATATAGGTAGTAGGTCACGATCCTGTGT
Found at i:732093 original size:45 final size:45
Alignment explanation
Indices: 732044--732136 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
732034 GTAAGCACCC
732044 GATCCATATTTTCTTTTTCCCCTTGAATTCGTTGGTCGATTGGTT
1 GATCCATATTTTCTTTTTCCCCTTGAATTCGTTGGTCGATTGGTT
732089 GATCCATATTTTCTTTTTCCCCTTGAATTCGTTGGTCGATTGGTT
1 GATCCATATTTTCTTTTTCCCCTTGAATTCGTTGGTCGATTGGTT
732134 GAT
1 GAT
732137 GTTGAGTTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.14, C:0.19, G:0.18, T:0.48
Consensus pattern (45 bp):
GATCCATATTTTCTTTTTCCCCTTGAATTCGTTGGTCGATTGGTT
Found at i:732572 original size:13 final size:14
Alignment explanation
Indices: 732554--732582 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
732544 CAAATGTAAT
732554 TTAAGTA-ATTTAA
1 TTAAGTATATTTAA
732567 TTAAGTATATTTAA
1 TTAAGTATATTTAA
732581 TT
1 TT
732583 TAAGGTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTAAGTATATTTAA
Found at i:738287 original size:52 final size:53
Alignment explanation
Indices: 738228--738348 Score: 145
Period size: 53 Copynumber: 2.3 Consensus size: 53
738218 TAACAAATGA
* * *
738228 TCATTATGAGCACCATCAATGCATACA-TGTGCCAAAATGGTAATTCAAAAAC
1 TCATTATGAACACCATCAATGCACACACAGTGCCAAAATGGTAATTCAAAAAC
* ** ** *
738280 TTATTATGAATTCCATGGATGCACACACAGTGCCAAAATGGTAATTCACAAAC
1 TCATTATGAACACCATCAATGCACACACAGTGCCAAAATGGTAATTCAAAAAC
*
738333 TCATTATGAATACCAT
1 TCATTATGAACACCAT
738349 GGTTGCACAT
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
52 20 0.35
53 37 0.65
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (53 bp):
TCATTATGAACACCATCAATGCACACACAGTGCCAAAATGGTAATTCAAAAAC
Found at i:738320 original size:53 final size:53
Alignment explanation
Indices: 738256--738370 Score: 176
Period size: 53 Copynumber: 2.2 Consensus size: 53
738246 ATGCATACAT
* *
738256 GTGCCAAAATGGTAATTCAAAAACTTATTATGAATTCCATGGATGCACACACA
1 GTGCCAAAATGGTAATTCAAAAACTCATTATGAATACCATGGATGCACACACA
* * * *
738309 GTGCCAAAATGGTAATTCACAAACTCATTATGAATACCATGGTTGCACATATA
1 GTGCCAAAATGGTAATTCAAAAACTCATTATGAATACCATGGATGCACACACA
738362 GTGCCAAAA
1 GTGCCAAAA
738371 GTACACATAG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (53 bp):
GTGCCAAAATGGTAATTCAAAAACTCATTATGAATACCATGGATGCACACACA
Found at i:744683 original size:52 final size:53
Alignment explanation
Indices: 744602--744705 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 53
744592 TAAGGTAACA
744602 AAATGGTAATTCACAAACTAATTATGAATACCATGGGTGCACATATAATGCCG
1 AAATGGTAATTCACAAACTAATTATGAATACCATGGGTGCACATATAATGCCG
* *
744655 AAATGGTAATTCA-AAACTCAA-TATGAATACCATGGTTGCACATATAGTGCC
1 AAATGGTAATTCACAAACT-AATTATGAATACCATGGGTGCACATATAATGCC
744706 TAAAGTATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
52 33 0.69
53 15 0.31
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (53 bp):
AAATGGTAATTCACAAACTAATTATGAATACCATGGGTGCACATATAATGCCG
Found at i:744867 original size:156 final size:153
Alignment explanation
Indices: 744639--744922 Score: 397
Period size: 156 Copynumber: 1.8 Consensus size: 153
744629 ATACCATGGG
* * *
744639 TGCACATATAATGCCGAAATGGTAATTCAAAACTCAATATGAATACCATGGTTGCACATATAGTG
1 TGCACACATAATGCCGAAATGGTAATTCAAAACTCAATATGAATACCATGGATGCACACATAGTG
* * * * * *
744704 CCTAAAGTATACATATTATTGATATGAAAATGCAACATGTGCATTAAACAAAATCGATCAATAAC
66 CCGAAAGTACACATAGTACTG--ACGAAAATGCAACATATGCATTAAACAAAATCGATCAATAAC
744769 AAGTGCTCATTATTAACACAATTAA
129 AAGTGCTCATTATTAACACAATTAA
* * * *
744794 TGCACACATAGTGCCGAAATGGTAATTCACAAACTCATTGTGAATTCCATGGATGCACACATAGT
1 TGCACACATAATGCCGAAATGGTAATTCA-AAACTCAATATGAATACCATGGATGCACACATAGT
* * *
744859 GCCGAAAGTACACGTAGTACTGACGAAAATGCAACATATGCATTAAATAAAATCGATCGATAAC
65 GCCGAAAGTACACATAGTACTGACGAAAATGCAACATATGCATTAAACAAAATCGATCAATAAC
744923 CATCATACAC
Statistics
Matches: 112, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
154 38 0.34
155 27 0.24
156 47 0.42
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (153 bp):
TGCACACATAATGCCGAAATGGTAATTCAAAACTCAATATGAATACCATGGATGCACACATAGTG
CCGAAAGTACACATAGTACTGACGAAAATGCAACATATGCATTAAACAAAATCGATCAATAACAA
GTGCTCATTATTAACACAATTAA
Found at i:745915 original size:12 final size:12
Alignment explanation
Indices: 745893--745941 Score: 59
Period size: 11 Copynumber: 4.2 Consensus size: 12
745883 ATTATGTTTC
745893 AAAGTAAAAGAAA
1 AAAG-AAAAGAAA
745906 AAAGAAAAG-AA
1 AAAGAAAAGAAA
745917 AAAGAAAA-AAGA
1 AAAGAAAAGAA-A
745929 AAAG-AAAGAAA
1 AAAGAAAAGAAA
745940 AA
1 AA
745942 CACAATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 17 0.52
12 12 0.36
13 4 0.12
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:745919 original size:18 final size:18
Alignment explanation
Indices: 745893--745935 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
745883 ATTATGTTTC
*
745893 AAAGTAAAAGAAAAAAGA
1 AAAGAAAAAGAAAAAAGA
745911 AAAGAAAAAGAAAAAAGA
1 AAAGAAAAAGAAAAAAGA
745929 AAAGAAA
1 AAAGAAA
745936 GAAAAACACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAAGA
Found at i:750366 original size:20 final size:20
Alignment explanation
Indices: 750328--750366 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
750318 AAAGGTGAAC
* * *
750328 CAAATGAAAAGTACGAAGAT
1 CAAATCAAAAGCACAAAGAT
750348 CAAATCAAAAGCACAAAGA
1 CAAATCAAAAGCACAAAGA
750367 AAAAAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.10
Consensus pattern (20 bp):
CAAATCAAAAGCACAAAGAT
Found at i:750377 original size:12 final size:11
Alignment explanation
Indices: 750362--750437 Score: 71
Period size: 12 Copynumber: 6.5 Consensus size: 11
750352 TCAAAAGCAC
750362 AAAGAAAAAAA
1 AAAGAAAAAAA
*
750373 TAAAGAGAAAAA
1 -AAAGAAAAAAA
*
750385 AAAGAAAAAAGC
1 AAAGAAAAAA-A
*
750397 AAAGAAATAAA
1 AAAGAAAAAAA
*
750408 AAAGCAAAACAA
1 AAAG-AAAAAAA
750420 AAAGCAAAGAAAA
1 AAAG-AAA-AAAA
750433 AAAGA
1 AAAGA
750438 CAAGAAGCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
11 13 0.25
12 33 0.62
13 7 0.13
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:750388 original size:23 final size:23
Alignment explanation
Indices: 750362--750434 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
750352 TCAAAAGCAC
*
750362 AAAGAAAAAAATAAAGAGAA-AAA
1 AAAGAAAAAAACAAAGA-AATAAA
*
750385 AAAGAAAAAAGCAAAGAAATAAA
1 AAAGAAAAAAACAAAGAAATAAA
* *
750408 AAAGCAAAACAA-AAAGCAAAGAAA
1 AAAG-AAAAAAACAAAG-AAATAAA
750432 AAA
1 AAA
750435 AGACAAGAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.05
23 26 0.62
24 14 0.33
ACGTcount: A:0.79, C:0.05, G:0.12, T:0.03
Consensus pattern (23 bp):
AAAGAAAAAAACAAAGAAATAAA
Found at i:750432 original size:16 final size:15
Alignment explanation
Indices: 750389--750435 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
750379 GAAAAAAAAG
750389 AAAAAAGCAAAGAAA
1 AAAAAAGCAAAGAAA
750404 TAAAAAAGC--A-AAA
1 -AAAAAAGCAAAGAAA
*
750417 CAAAAAGCAAAGAAA
1 AAAAAAGCAAAGAAA
750432 AAAA
1 AAAA
750436 GACAAGAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 7 0.27
13 3 0.12
14 2 0.08
15 6 0.23
16 8 0.31
ACGTcount: A:0.79, C:0.09, G:0.11, T:0.02
Consensus pattern (15 bp):
AAAAAAGCAAAGAAA
Found at i:751605 original size:37 final size:36
Alignment explanation
Indices: 751550--751621 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 36
751540 AAATAAAGAA
*
751550 TTTTGTCTCACTTTAGACAATTTTTACTCAAAACAAG
1 TTTTGTCTCACTTTAGACAATTTCT-CTCAAAACAAG
* *
751587 TTTTGTCTC-TTTTGAGACAGTTTCTCTCAAAACAA
1 TTTTGTCTCACTTT-AGACAATTTCTCTCAAAACAA
751622 AAGCCTGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 13 0.42
37 18 0.58
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (36 bp):
TTTTGTCTCACTTTAGACAATTTCTCTCAAAACAAG
Found at i:751694 original size:50 final size:51
Alignment explanation
Indices: 751634--751732 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 51
751624 GCCTGAGATT
* *
751634 GTTTCTCTTGAAACAAATTTTGGCTCCCTTGAGATAGTTTCT-TTGAAAAC
1 GTTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAGTTTCTCTTGAAAAC
** * *
751684 GTTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAA
1 GTTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAGTTTCTCTTGAAA
751733 CATAAACTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 36 0.86
51 6 0.14
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.41
Consensus pattern (51 bp):
GTTTCCCTTGAAACAAATTTTGGCTCCCTTGAGACAGTTTCTCTTGAAAAC
Found at i:751824 original size:37 final size:37
Alignment explanation
Indices: 751741--751870 Score: 167
Period size: 36 Copynumber: 3.6 Consensus size: 37
751731 AACATAAACT
* * * *
751741 TTGAAACA-TTTCCCTTGAAACGAA-TTTCGTCTCCC
1 TTGAGACAGTTTCCCTTGAAACCAAGTTTTGTCTCTC
* *
751776 TCGAGAGAGTTTCCCTTGAAACCAAGTTTTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACCAAGTTTTGTCTCTC
* *
751813 TTGAGATAGTTTCCCTTGAAA-TAAGTTTTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACCAAGTTTTGTCTCTC
751849 TTGAGACAGTTTCCCTTGAAAC
1 TTGAGACAGTTTCCCTTGAAAC
751871 ATAAACTTTG
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
35 5 0.06
36 49 0.60
37 28 0.34
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (37 bp):
TTGAGACAGTTTCCCTTGAAACCAAGTTTTGTCTCTC
Found at i:751953 original size:137 final size:137
Alignment explanation
Indices: 751684--752009 Score: 386
Period size: 137 Copynumber: 2.4 Consensus size: 137
751674 CTTTGAAAAC
*
751684 GTTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACTTTGAAACA
1 GTTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACATAAACTTTGAAACA
* * ** * * *
751749 TTTCCCTTGAAACGAATTTCGTCTCCCTCGAGAGAGTTTCCCTTGAAACCAAGTTTTGTCTCTCT
66 TTTCCCTTGAAACAAATTTCGTCTCCCTCGAGACAGTTTCCCTTGAAACCAAAATGTATCTCACT
751814 TGAGATA
131 TGAGATA
751821 GTTTCCCTTGAAAT-AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACATAAACTTTGAAAA
1 GTTTCCCTTGAAATGAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACATAAACTTTG-AAA
* * * ** * *
751885 CGTTTCCCTTGAAACAAATTTTGTCTCTCTTTAGTCAGTTTCCTTTGAAA-CAAAATGTATCTCA
64 CATTTCCCTTGAAACAAATTTCGTCTCCCTCGAGACAGTTTCCCTTGAAACCAAAATGTATCTCA
*
751949 CTTGAGATG
129 CTTGAGATA
** * ** * * * *
751958 GTTTTTCTTAAAACCAACTTTGTCTCGCTTGAGAAAGTTTTACCTTGAAACA
1 GTTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAG-TTTCCCTTGAAACA
752010 AAATTTTTCT
Statistics
Matches: 161, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
136 2 0.01
137 100 0.62
138 59 0.37
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (137 bp):
GTTTCCCTTGAAATGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACATAAACTTTGAAACA
TTTCCCTTGAAACAAATTTCGTCTCCCTCGAGACAGTTTCCCTTGAAACCAAAATGTATCTCACT
TGAGATA
Found at i:751998 original size:36 final size:36
Alignment explanation
Indices: 751944--752070 Score: 128
Period size: 36 Copynumber: 3.5 Consensus size: 36
751934 ACAAAATGTA
* *
751944 TCTCACTTGAGATGGTTTTTCTTAAAACCAACTTTG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACCAACTTTG
* * * * * *
751980 TCTCGCTTGAGAAAGTTTTACCTTGAAACAAAATTTT
1 TCTCGCTTGAGATAGTTTT-TCTTAAAACCAACTTTG
* * * *
752017 TCTAGCTCGAGATTGTTTTTCTTAAAACCAACTTCG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACCAACTTTG
*
752053 TCTCGCTTGAGACAGTTT
1 TCTCGCTTGAGATAGTTT
752071 GTTGAAACAA
Statistics
Matches: 68, Mismatches: 22, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
36 41 0.60
37 27 0.40
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (36 bp):
TCTCGCTTGAGATAGTTTTTCTTAAAACCAACTTTG
Found at i:752029 original size:73 final size:73
Alignment explanation
Indices: 751929--752070 Score: 214
Period size: 73 Copynumber: 1.9 Consensus size: 73
751919 TCAGTTTCCT
* *
751929 TTGAAACAAAATGTATCTCACTTGAGATGGTTTTTCTTAAAACCAACTTTGTCTCGCTTGAGAAA
1 TTGAAACAAAATGTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGAAA
751994 GTTTTACC
66 GTTTTACC
* * * *
752002 TTGAAACAAAATTTTTCT-AGCTCGAGATTGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGAC
1 TTGAAACAAAATGTATCTCA-CTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGAA
752066 AGTTT
65 AGTTT
752071 GTTGAAACAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
72 1 0.02
73 61 0.98
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (73 bp):
TTGAAACAAAATGTATCTCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGAAA
GTTTTACC
Found at i:752113 original size:73 final size:72
Alignment explanation
Indices: 751963--752117 Score: 172
Period size: 73 Copynumber: 2.1 Consensus size: 72
751953 AGATGGTTTT
* *
751963 TCTTAAAACCAACTTTGTCTCGCTTGAGAAAGTTTTACCTTGAAACAAAATTTTTCTAGCTCGAG
1 TCTTAAAACCAACTTCGTCTCGCTTGAGAAAGTTTTA-CTTGAAACAAAATTTTTCTAGCTCAAG
** * *
752028 ATTGTTTT
65 AGAGATTC
* *
752036 TCTTAAAACCAACTTCGTCTCGCTTGAGACAG-TTT-GTTGAAACAATAAATTTTATCTCA-CTC
1 TCTTAAAACCAACTTCGTCTCGCTTGAGAAAGTTTTACTTGAAAC-A-AAATTTT-TCT-AGCTC
752098 AAGAGAGATTC
62 AAGAGAGATTC
752109 TCTTAAAAC
1 TCTTAAAAC
752118 ATGTTTCTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
70 7 0.10
71 1 0.01
72 10 0.14
73 51 0.73
74 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (72 bp):
TCTTAAAACCAACTTCGTCTCGCTTGAGAAAGTTTTACTTGAAACAAAATTTTTCTAGCTCAAGA
GAGATTC
Found at i:752530 original size:91 final size:91
Alignment explanation
Indices: 752377--752931 Score: 733
Period size: 91 Copynumber: 6.0 Consensus size: 91
752367 GATAAACCGA
* * *
752377 TCAACATTTCCAGTAGAGAGTTCATAATGAGAA-AACTCATCCAACGAGGGAGAAAAAGTTCATA
1 TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
* *
752441 ATGAGAAGGACTTGTTCAAGCTT-GC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* *
752466 ATCAACATTTTCGGTGGAGAGTTCATAATGTGAAGAACTCATCCAACGAGGGAGAAGAAGTTCAT
1 -TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCAT
752531 AATGAGAAGAACTTGTTCAACCTTGGC
65 AATGAGAAGAACTTGTTCAACCTTGGC
* * *
752558 TCAACATTTACAATGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGTGAGAAGAAGTTCATA
1 TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
* *
752623 ATGAGAAGAAATTGTTCAATCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
*
752649 TCAACA-ATTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCAT
1 TCAACATTTTC-AGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCAT
*
752713 AATGAGAAAAACTTGTTCAACCTTGGC
65 AATGAGAAGAACTTGTTCAACCTTGGC
* * **
752740 TCAATA-TTTCTAGTGAAGAGTTCATAATGAGAAGAACTCATCCAATGAATCATCCAACGAGAAA
1 TCAACATTTTC-AGTGGAGAGTTCATAATGAGAAG-A---A--C------TCATCCAACGAGGGA
*
752804 GAAGAAGTTCATAATGAGAAGAACATGTTCAACCTT-GC
53 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGC
* *
752842 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGAAAGAGGGAGAAGAAGTTCA
1 -TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCC-AACGAGGGAGAAGAAGTTCA
752907 TAATGAGAAGAACTTGTTCAACCTT
64 TAATGAGAAGAACTTGTTCAACCTT
752932 AGCTTGATTC
Statistics
Matches: 412, Mismatches: 35, Indels: 34
0.86 0.07 0.07
Matches are distributed among these distances:
90 31 0.08
91 253 0.61
92 44 0.11
95 1 0.00
97 2 0.00
99 1 0.00
102 3 0.01
103 74 0.18
104 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (91 bp):
TCAACATTTTCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTGGC
Found at i:752865 original size:103 final size:103
Alignment explanation
Indices: 752686--752885 Score: 321
Period size: 103 Copynumber: 1.9 Consensus size: 103
752676 TGAGAAGAAC
** * * *
752686 TCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAAAACTTGTTCAACCTTGGCTCAATATTTCT
1 TCATCCAACGAGAAAGAAGAAGTTCATAATGAGAAAAACATGTTCAACCTTGGCTCAACATTTCC
752751 AGTGAAGAGTTCATAATGAGAAGAACTCATCCAATGAA
66 AGTGAAGAGTTCATAATGAGAAGAACTCATCCAATGAA
*
752789 TCATCCAACGAGAAAGAAGAAGTTCATAATGAGAAGAACATGTTCAACCTT-GCATCAACATTTC
1 TCATCCAACGAGAAAGAAGAAGTTCATAATGAGAAAAACATGTTCAACCTTGGC-TCAACATTTC
*
752853 CAGTGGAGAGTTCATAATGAGAAGAACTCATCC
65 CAGTGAAGAGTTCATAATGAGAAGAACTCATCC
752886 GAAAGAGGGA
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 2 0.02
103 87 0.98
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (103 bp):
TCATCCAACGAGAAAGAAGAAGTTCATAATGAGAAAAACATGTTCAACCTTGGCTCAACATTTCC
AGTGAAGAGTTCATAATGAGAAGAACTCATCCAATGAA
Found at i:753124 original size:44 final size:44
Alignment explanation
Indices: 753074--753397 Score: 150
Period size: 44 Copynumber: 7.4 Consensus size: 44
753064 AACTTTTTGC
* *
753074 TCGATTCTATCACAGAAAGAGGAAGATCAACATCGACATCTCGT
1 TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
* * * * **** * *
753118 TCGATTCCATCAGAGAATGAGGTGGATCAATATTTTTATTTCGC
1 TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
* * * * * * * * * *
753162 TCAAATCCATCACAGAAGGAGTTGGATCAATATCAACTTTTTGT
1 TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
* *
753206 TCGATTCTATCACA-AAAGGAGGTAGATCAAC-CCGACATCTCGT
1 TCGATTCCATCACAGAAA-GAGGTAGATCAACATCGACATCTCGT
* ** **** * *
753249 TCGATTCCATCACAG-AAGAAGGTGGATCGGCATTTTTATTTCGC
1 TCGATTCCATCACAGAAAG-AGGTAGATCAACATCGACATCTCGT
* * * * ** * * * * * * *
753293 TCAAATCCATCATAGAAGGAATTGGATCAGCATCAACTTTTTGC
1 TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
* * * *
753337 TCGATTCTATCACAGAAAGAGGTAGATCAGCACCGACATCTTGT
1 TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
*
753381 TCGATGCCATCACAGAA
1 TCGATTCCATCACAGAA
753398 GAAGGTGGAT
Statistics
Matches: 200, Mismatches: 75, Indels: 10
0.70 0.26 0.04
Matches are distributed among these distances:
42 1 0.00
43 33 0.17
44 164 0.82
45 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (44 bp):
TCGATTCCATCACAGAAAGAGGTAGATCAACATCGACATCTCGT
Found at i:753297 original size:131 final size:132
Alignment explanation
Indices: 753062--753421 Score: 555
Period size: 131 Copynumber: 2.7 Consensus size: 132
753052 AAGAACTTGT
* *
753062 TCAACTTTTTGCTCGATTCTATCACAGAAAGAGGAAGATCAACATCGACATCTCGTTCGATTCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAACACCGACATCTCGTTCGATTCCA
* * * *
753127 TCAGAGAATG-AGGTGGATCAATATTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCA
66 TCACAGAA-GAAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCACAGAAGGAATTGGATCA
*
753191 ATA
130 ACA
*
753194 TCAACTTTTTGTTCGATTCTATCACA-AAAGGAGGTAGATCAAC-CCGACATCTCGTTCGATTCC
1 TCAACTTTTTGCTCGATTCTATCACAGAAA-GAGGTAGATCAACACCGACATCTCGTTCGATTCC
* *
753257 ATCACAGAAGAAGGTGGATCGGCATTTTTATTTCGCTCAAATCCATCATAGAAGGAATTGGATCA
65 ATCACAGAAGAAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCACAGAAGGAATTGGATCA
*
753322 GCA
130 ACA
* * *
753325 TCAACTTTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAGCACCGACATCTTGTTCGATGCCA
1 TCAACTTTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAACACCGACATCTCGTTCGATTCCA
753390 TCACAGAAGAAGGTGGATCGACATTTTTATTT
66 TCACAGAAGAAGGTGGATCGACATTTTTATTT
753422 GGCATATCCA
Statistics
Matches: 208, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
130 1 0.00
131 117 0.56
132 90 0.43
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (132 bp):
TCAACTTTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAACACCGACATCTCGTTCGATTCCA
TCACAGAAGAAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCACAGAAGGAATTGGATCAA
CA
Found at i:759121 original size:20 final size:20
Alignment explanation
Indices: 759093--759131 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
759083 CTTTACTTTC
* *
759093 TCATGTGGATTCAAACCCAA
1 TCATATGGATCCAAACCCAA
759113 TCATATGGATCCAAACCCA
1 TCATATGGATCCAAACCCA
759132 GTCTCCTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (20 bp):
TCATATGGATCCAAACCCAA
Found at i:775491 original size:12 final size:13
Alignment explanation
Indices: 775462--775496 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
775452 GAAAAGAGAA
*
775462 GAAAGAGAAAAAT
1 GAAAAAGAAAAAT
775475 GAAAAAGAAAAAT
1 GAAAAAGAAAAAT
775488 -AAAAAGAAA
1 GAAAAAGAAA
775497 CCGGAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (13 bp):
GAAAAAGAAAAAT
Found at i:776398 original size:43 final size:42
Alignment explanation
Indices: 776307--776390 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
776297 TTACTGAATT
**
776307 CTTCACAGAAGAAGTTGGATCAGTGAAAACCTTTCCTTGATC
1 CTTCACAGAAGAAGTTGGATCAGTGAAAACCGCTCCTTGATC
*
776349 CTTCACAGAAAGAA-TTGGATCAGTGAAAATCGCTCACTTGAT
1 CTTCACAG-AAGAAGTTGGATCAGTGAAAACCGCTC-CTTGAT
776391 TTTTCACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 26 0.70
43 11 0.30
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (42 bp):
CTTCACAGAAGAAGTTGGATCAGTGAAAACCGCTCCTTGATC
Found at i:776968 original size:7 final size:7
Alignment explanation
Indices: 776956--776989 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
776946 AATATGTGGG
776956 CATATAT
1 CATATAT
776963 CATATAT
1 CATATAT
776970 CATATAT
1 CATATAT
* *
776977 CATGTAA
1 CATATAT
776984 CATATA
1 CATATA
776990 ATTTTTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (7 bp):
CATATAT
Found at i:777031 original size:19 final size:19
Alignment explanation
Indices: 777007--777061 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
776997 CTAAGTGATT
777007 GCATATTAAATAATAGTTA
1 GCATATTAAATAATAGTTA
777026 GCATATT--AT-ATAG-TA
1 GCATATTAAATAATAGTTA
777041 -CATATTAAATAATAGTT-
1 GCATATTAAATAATAGTTA
777058 GCAT
1 GCAT
777062 TGCATATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
14 6 0.19
15 2 0.06
16 6 0.19
17 6 0.19
18 4 0.13
19 7 0.23
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (19 bp):
GCATATTAAATAATAGTTA
Found at i:777125 original size:18 final size:19
Alignment explanation
Indices: 777102--777140 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
777092 TATTAAATAA
777102 TTAGTATAT-TATATAGTT
1 TTAGTATATATATATAGTT
777120 TTAGTATATACTATATAGTT
1 TTAGTATATA-TATATAGTT
777140 T
1 T
777141 ACATGTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (19 bp):
TTAGTATATATATATAGTT
Found at i:778951 original size:20 final size:20
Alignment explanation
Indices: 778926--778964 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
778916 CTAACATTAA
*
778926 AATT-AAGCCTTAGACTTTTT
1 AATTAAAGCATTAGA-TTTTT
778946 AATTAAAGCATTAGATTTT
1 AATTAAAGCATTAGATTTT
778965 AAGTTCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (20 bp):
AATTAAAGCATTAGATTTTT
Found at i:780565 original size:186 final size:186
Alignment explanation
Indices: 779841--780971 Score: 916
Period size: 185 Copynumber: 6.1 Consensus size: 186
779831 TCATGACAGA
* * * * * * *
779841 GTTGAAATGTCTTAAGTAAACATTTTAATTTTTA-TGAACTA-AAAAGGTTAACTTATACAAGTT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAG-ACTATAAGA-GTTAACTTATCCAAGTT
* * * * * * * * * *
779904 -TTAACATTAATGAATGGAAGTTTAAATAGCGTTGAGATGTCTGAACTGAAGACTTTGAT-TTTT
64 GCT-ACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTA
** * * * * * * *
779967 TTGACTAAAGATGTTAACTTATCCAAGTTTTTACGTTAATGGATGGGAGTTTGATTAAC
128 CGGACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
* ** * * * * * * *
780026 ATTTCAATGACTAAAGTCAACATTTTGATGTTTACAGACTA-AAAAGATTAAATTAT-CAA--TG
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTATAAGAG-TTAACTTATCCAAGTTG
* * * * * * * * *
780087 TTACAATAACGGATGGAAGTTTGAATAACTTTGAATTGTGTTAACTAAACACTTTGATGTTTATG
65 CTACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTACG
* * * * * *
780152 GTCTAAAAAGGTTAACTTATCCAAGTTGTTATATTAATGGATGAAAGTTGGAATGGC
130 GACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
* ** * * ** * *
780209 ATTGAAATACCTTAACTAAACATTTTCAT-TTTATGGAGTATATAGA-ATAACTTATCCAAGTTG
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTATA-AGAGTTAACTTATCCAAGTTG
* * * * * * * *
780272 TTAAATTAATGGATGAAATTTTGAATAGCACTGAAATATTTTAACTAAGCGA-TTTGATGTTAAC
65 CTACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAAC-ACTTTGATGTTTAC
* * *
780336 -GA--AAAGAGGTTAACATATCCAAGTTGTTACATTAGTGGATGGAAGTTTGAATAGC
129 GGACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
* **
780391 GTTGAAATGTCTTAACTAAAAACTTTGATGTTTACAGACTA-AAGATGTTAACTTGCCCAAGTTG
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTATAAGA-GTTAACTTATCCAAGTTG
* * * ** *
780455 CTACATTATTGGATAGAAGTTTAAATAGCATTGAAATGCCTTATCTAAACACTTTGATGTTTACG
65 CTACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTACG
* * * * * ***
780520 GTCGAAATAGGATAACTTATCCAAGTTGTTACTTTAATGGATGGAAATAAAAATAGC
130 GACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
* * * * * *
780577 GTTGAACTATCTTGACTAAACACTTTAATGTTTAC-GA-AATAAGAAGTTTACTTATCCAAGTT-
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTATAAG-AGTTAACTTATCCAAGTTG
*** *** * * *
780639 CTTACATTAACAAATGGAAGTTTGAATATTGTTGAAATGTATTAATTAAACACTTTGATGTTTAC
65 C-TACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTAC
* * * **
780704 GGACCAAATAGTTTAACTTATCCAAGTTGTTACATTAATGTATATAAGTTTGAATAGC
129 GGACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
* * * *
780762 GTTTAAATGTCTTAAATAAACACTTTGATGTTTA-ATGACTA-AAGAGGTTTATTTATCCAAGTT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACA-GACTATAAGA-GTTAACTTATCCAAGTT
* **
780825 GTTACATTAATGGATGGAAGTTTGAATAGGGTTGAAATATCTTAACTAAACACTTTGATGTTTAC
64 GCTACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTAC
* * * * *
780890 AGACTAAAAAGATTAACTTATCCAAGTTGTTACATTAATGGCTGGAAGTTTGAATATC
129 GGACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
** *
780948 ACTGATATGTCTTAACTAAACACT
1 GTTGAAATGTCTTAACTAAACACT
780972 CAAACATTTA
Statistics
Matches: 748, Mismatches: 173, Indels: 49
0.77 0.18 0.05
Matches are distributed among these distances:
181 3 0.00
182 131 0.18
183 146 0.20
184 10 0.01
185 236 0.32
186 221 0.30
187 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (186 bp):
GTTGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTATAAGAGTTAACTTATCCAAGTTGC
TACATTAATGGATGGAAGTTTGAATAGCATTGAAATATCTTAACTAAACACTTTGATGTTTACGG
ACTAAATAGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGC
Found at i:780696 original size:278 final size:276
Alignment explanation
Indices: 779841--780971 Score: 958
Period size: 275 Copynumber: 4.1 Consensus size: 276
779831 TCATGACAGA
* * * * * * * *
779841 GTTGAAATGTCTTAAGTAAACATTTTAATTTTTATGAACTAAAAAGGTTAACTTATACAAGTT-T
1 GTTGAAATGTATTAACTAAACACTTTGATGTTTACGGACTAAAAA-GTTAACTTATCCAAGTTGT
* * * * * * * * * * **
779905 TAACATTAATGAATGGAAGTTTAAATAGCGTTGAGATGTCTGAACTGAAGACTTTGATTTTTTTG
65 T-ACATTAATGGATAGAAGTTTGAATAGCATTGAAATGCCTTAACTAAACACTTTGATGTTTAAG
* * * * * * * * * * * * **
779970 ACTAAAGATGTTAACTTATCCAAGTTTTTACGTTAATGGATGGGAGTTTGATTAACATTTCAATG
129 GCGAAATAGGATAACTTATCCAAGTTGTTACATTAATGGATGGAAATTTGAATAGCGTTGAAAT-
* * * * * * * *
780035 A-CTAAAGTCAACATTTTGATGTTTAC-AGACTAAAAAGATTAAATTAT-CAA--TGTTACAATA
193 ATCTTAACTAAACACTTTGATGTTTACGA-AATAAGAAG-TTAACTTATCCAAGTTGTTACATTA
* *
780095 ACGGATGGAAGTTTGAATAACT
256 ATGGATGGAAGTTTGAAT-ATT
* * * *
780117 -TTGAATTGTGTTAACTAAACACTTTGATGTTTATGGTCTAAAAAGGTTAACTTATCCAAGTTGT
1 GTTGAAATGTATTAACTAAACACTTTGATGTTTACGGACTAAAAA-GTTAACTTATCCAAGTTGT
* * * * * * *
780181 TATATTAATGGAT-GAAAGTTGGAATGGCATTGAAATACCTTAACTAAACATTTTCAT-TTTATG
65 TACATTAATGGATAG-AAGTTTGAATAGCATTGAAATGCCTTAACTAAACACTTTGATGTTTAAG
* * * * **
780244 GAGTATATAGAATAACTTATCCAAGTTGTTAAATTAATGGAT-GAAATTTTGAATAGCACTGAAA
129 GCG-AAATAGGATAACTTATCCAAGTTGTTACATTAATGGATGGAAA-TTTGAATAGCGTTGAAA
* * * * *
780308 TATTTTAACTAAGCGA-TTTGATGTTAACG-AA-AAGAGGTTAACATATCCAAGTTGTTACATTA
192 TATCTTAACTAAAC-ACTTTGATGTTTACGAAATAAGAAGTTAACTTATCCAAGTTGTTACATTA
* **
780370 GTGGATGGAAGTTTGAATAGC
256 ATGGATGGAAGTTTGAATATT
* * * * ** *
780391 GTTGAAATGTCTTAACTAAAAACTTTGATGTTTACAGACTAAAGATGTTAACTTGCCCAAGTTGC
1 GTTGAAATGTATTAACTAAACACTTTGATGTTTACGGACTAAA-AAGTTAACTTATCCAAGTTGT
* * * *
780456 TACATTATTGGATAGAAGTTTAAATAGCATTGAAATGCCTTATCTAAACACTTTGATGTTTACGG
65 TACATTAATGGATAGAAGTTTGAATAGCATTGAAATGCCTTAACTAAACACTTTGATGTTTAAGG
* *** *
780521 TCGAAATAGGATAACTTATCCAAGTTGTTACTTTAATGGATGGAAATAAAAATAGCGTTGAACTA
130 -CGAAATAGGATAACTTATCCAAGTTGTTACATTAATGGATGGAAATTTGAATAGCGTTGAAATA
* * * * **
780586 TCTTGACTAAACACTTTAATGTTTACGAAATAAGAAGTTTACTTATCCAAGTTCTTACATTAACA
194 TCTTAACTAAACACTTTGATGTTTACGAAATAAGAAGTTAACTTATCCAAGTTGTTACATTAATG
*
780651 AATGGAAGTTTGAATATT
259 GATGGAAGTTTGAATATT
* * *
780669 GTTGAAATGTATTAATTAAACACTTTGATGTTTACGGACCAAATAGTTTAACTTATCCAAGTTGT
1 GTTGAAATGTATTAACTAAACACTTTGATGTTTACGGACTAAAAAG-TTAACTTATCCAAGTTGT
* * * * * *
780734 TACATTAATGTATATAAGTTTGAATAGCGTTTAAATGTCTTAAATAAACACTTTGATGTTTAATG
65 TACATTAATGGATAGAAGTTTGAATAGCATTGAAATGCCTTAACTAAACACTTTGATGTTTAA-G
* * * * * * * *
780799 ACTAAAGAGGTTTATTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGGGTTGAAATA
129 GCGAAATAGGATAACTTATCCAAGTTGTTACATTAATGGATGGAAATTTGAATAGCGTTGAAATA
* *
780864 TCTTAACTAAACACTTTGATGTTTAC-AGACTAAAAAGATTAACTTATCCAAGTTGTTACATTAA
194 TCTTAACTAAACACTTTGATGTTTACGA-AATAAGAAG-TTAACTTATCCAAGTTGTTACATTAA
* *
780928 TGGCTGGAAGTTTGAATATC
257 TGGATGGAAGTTTGAATATT
** * *
780948 ACTGATATGTCTTAACTAAACACT
1 GTTGAAATGTATTAACTAAACACT
780972 CAAACATTTA
Statistics
Matches: 679, Mismatches: 153, Indels: 43
0.78 0.17 0.05
Matches are distributed among these distances:
272 7 0.01
273 7 0.01
274 11 0.02
275 277 0.41
276 78 0.11
277 9 0.01
278 231 0.34
279 59 0.09
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (276 bp):
GTTGAAATGTATTAACTAAACACTTTGATGTTTACGGACTAAAAAGTTAACTTATCCAAGTTGTT
ACATTAATGGATAGAAGTTTGAATAGCATTGAAATGCCTTAACTAAACACTTTGATGTTTAAGGC
GAAATAGGATAACTTATCCAAGTTGTTACATTAATGGATGGAAATTTGAATAGCGTTGAAATATC
TTAACTAAACACTTTGATGTTTACGAAATAAGAAGTTAACTTATCCAAGTTGTTACATTAATGGA
TGGAAGTTTGAATATT
Found at i:780990 original size:93 final size:93
Alignment explanation
Indices: 779841--780971 Score: 976
Period size: 93 Copynumber: 12.3 Consensus size: 93
779831 TCATGACAGA
* * * * * * * *
779841 GTTGAAATGTCTTAAGTAAACATTTTAATTTTTATGAACTAAAAAGGTTAACTTATACAAGTT-T
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* *
779905 TAACATTAATGAATGGAAGTTTAAATAGC
66 T-ACATTAATGGATGGAAGTTTGAATAGC
* * * * *** * *
779934 GTTGAGATGTCTGAACTGAAGACTTTGAT-TTTTTTGACTAAAGATG-TTAACTTATCCAAGTTT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAA-AAGATTAACTTATCCAAGTTG
* * * *
779997 TTACGTTAATGGATGGGAGTTTGATTAAC
65 TTACATTAATGGATGGAAGTTTGAATAGC
* ** * * * * * * *
780026 ATTTCAATGACTAAAGTCAACATTTTGATGTTTACAGACTAAAAAGATTAAATTAT-CAA--TGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* * *
780088 TACAATAACGGATGGAAGTTTGAATAAC
66 TACATTAATGGATGGAAGTTTGAATAGC
* * * * * *
780116 TTTGAATTGTGTTAACTAAACACTTTGATGTTTATGGTCTAAAAAGGTTAACTTATCCAAGTTGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* * * *
780181 TATATTAATGGATGAAAGTTGGAATGGC
66 TACATTAATGGATGGAAGTTTGAATAGC
* ** * * * * * * *
780209 ATTGAAATACCTTAACTAAACATTTTCAT-TTTATGGAGTATATAGAATAACTTATCCAAGTTGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* * *
780273 TAAATTAATGGATGAAATTTTGAATAGC
66 TACATTAATGGATGGAAGTTTGAATAGC
** * * * * * * *
780301 ACTGAAATATTTTAACTAAGCGA-TTTGATGTTAAC-GA--AAAGAGGTTAACATATCCAAGTTG
1 GTTGAAATGTCTTAACTAAAC-ACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTG
*
780362 TTACATTAGTGGATGGAAGTTTGAATAGC
65 TTACATTAATGGATGGAAGTTTGAATAGC
* * * **
780391 GTTGAAATGTCTTAACTAAAAACTTTGATGTTTACAGACTAAAGATG-TTAACTTGCCCAAGTTG
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAA-AAGATTAACTTATCCAAGTTG
* * * *
780455 CTACATTATTGGATAGAAGTTTAAATAGC
65 TTACATTAATGGATGGAAGTTTGAATAGC
* * * * * *
780484 ATTGAAATGCCTTATCTAAACACTTTGATGTTTACGGTCGAAATAGGA-TAACTTATCCAAGTTG
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAA-AAGATTAACTTATCCAAGTTG
* * ***
780548 TTACTTTAATGGATGGAAATAAAAATAGC
65 TTACATTAATGGATGGAAGTTTGAATAGC
* * * * * * * * *
780577 GTTGAACTATCTTGACTAAACACTTTAATGTTTACGAAATAAGAAG-TTTACTTATCCAAGTTCT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
*** **
780641 TACATTAACAAATGGAAGTTTGAATATT
66 TACATTAATGGATGGAAGTTTGAATAGC
* * * * *
780669 GTTGAAATGTATTAATTAAACACTTTGATGTTTACGGACCAAATAGTTTAACTTATCCAAGTTGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* **
780734 TACATTAATGTATATAAGTTTGAATAGC
66 TACATTAATGGATGGAAGTTTGAATAGC
* * ** * * * *
780762 GTTTAAATGTCTTAAATAAACACTTTGATGTTTAATGACTAAAGAGGTTTATTTATCCAAGTTGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
*
780827 TACATTAATGGATGGAAGTTTGAATAGG
66 TACATTAATGGATGGAAGTTTGAATAGC
* *
780855 GTTGAAATATCTTAACTAAACACTTTGATGTTTACAGACTAAAAAGATTAACTTATCCAAGTTGT
1 GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
* *
780920 TACATTAATGGCTGGAAGTTTGAATATC
66 TACATTAATGGATGGAAGTTTGAATAGC
** *
780948 ACTGATATGTCTTAACTAAACACT
1 GTTGAAATGTCTTAACTAAACACT
780972 CAAACATTTA
Statistics
Matches: 818, Mismatches: 203, Indels: 34
0.78 0.19 0.03
Matches are distributed among these distances:
89 1 0.00
90 136 0.17
91 5 0.01
92 217 0.27
93 458 0.56
94 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (93 bp):
GTTGAAATGTCTTAACTAAACACTTTGATGTTTACGGACTAAAAAGATTAACTTATCCAAGTTGT
TACATTAATGGATGGAAGTTTGAATAGC
Found at i:781120 original size:93 final size:92
Alignment explanation
Indices: 781007--782517 Score: 1052
Period size: 93 Copynumber: 16.3 Consensus size: 92
780997 AACATATCGC
* * *
781007 TGAAATGTCTTAACTAAACACCTTGATGTTGACGAACTAAAGAGGTTAACTTATCCAATATGTGA
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAAT-TGTTA
*
781072 CATTAATTGATGGAAGTTTGAATAGCGT
65 CATTAATGGATGGAAGTTTGAATAGCGT
* * * ** *
781100 TGAAATGTATTAACAAAACACTTTGATATTTACGAACTATAA-AAATTAACATATCCAAGTTGTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTA-AAGAGGTTAACTTATCCAA-TTGTT
* ***
781164 ACATTAATGGATGAAAGTTTGAATATAAT
64 ACATTAATGGATGGAAGTTTGAATAGCGT
* ** * * *
781193 T-AAAGTCTCTTAGGTAAACACTTTTATGTTTAC-AGGCTAAAGAGGTCAACTTATCCAAATTGT
1 TGAAA-TGTCTTAACTAAACACTTTGATGTTTACGA-ACTAAAGAGGTTAACTTATCC-AATTGT
* * *
781256 TACAATAATTGATGGAAGTTTGAATAGAGT
63 TACATTAATGGATGGAAGTTTGAATAGCGT
* * * *
781286 TAAAATGTCTAAACTAAACACTTTGATGTTTACAAACTAGAGAGGTTAACTTATCCAAGTTGTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAA-TTGTTA
* * *
781351 CATTAATGGAT-GAAATTTGAATTGCAT
65 CATTAATGGATGGAAGTTTGAATAGCGT
** * * * * * ** *
781378 TGAAACATCTTAACTAAACACTTTGATATTTA-TAGGCTATAGAGATTAACACATCCAAGTTTTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGA-ACTAAAGAGGTTAACTTATCCAA-TTGTT
* * * * ***
781442 ACATTAATGGAAGGAAATATAAATAATAT
64 ACATTAATGGATGGAAGTTTGAATAGCGT
* * * * * * * * * *
781471 TGAAATGTGTGAACTAAAAAATTTGATCTTTACAAACAACAACA-ATTAACTTATCAAAGTTGTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTA-AAGAGGTTAACTTATCCAA-TTGTT
* * *
781535 ACATTAATGGATGCAAGTTTGAATAACAT
64 ACATTAATGGATGGAAGTTTGAATAGCGT
* * * *
781564 TGAAATGTCATAACTAAAC-CGTTTGATGTATATGAAAT-AAGAGGTTGAA-TTATCCAAGTAT-
1 TGAAATGTCTTAACTAAACAC-TTTGATGTTTACGAACTAAAGAGGTT-AACTTATCCAA-T-TG
* * * *
781625 TTACAATAATGTATAGAAGTTTGAATAGTGT
62 TTACATTAATGGATGGAAGTTTGAATAGCGT
* * ** * * * *
781656 TGCAATGTCTTATCTGCACACTTTGATGTTTA-TAGACTAAATATGTTAACTTATCCATGTTGTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGA-ACTAAAGAGGTTAACTTATCCA-ATTGTT
* *
781720 ACATTAATGCATGGAAGTTTGAATAGTGT
64 ACATTAATGGATGGAAGTTTGAATAGCGT
* * * * * * *
781749 TGAAATGTCTTTACTGAACACTTTGATGTTTATTG-ATTAAAAAGGTTAA-TTATCTGAGTTGTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTA-CGAACTAAAGAGGTTAACTTATC-CAATTGTT
* * *
781812 ACATTAATGGATGCAATTTTGAATAGCAT
64 ACATTAATGGATGGAAGTTTGAATAGCGT
* * * ** * * *
781841 TGAAATGTTTTAACTAAATACTTTGATGTTTATGGGCTAAAGTGGTTAACATATCCAAGTTCTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAA-TTGTTA
* * * *
781906 CATTAATGGATGGAAGTTTCAAAAGAGA
65 CATTAATGGATGGAAGTTTGAATAGCGT
* * *
781934 TGAAATGTCTTAACTAAACACTTTGATGTTTAC-AGACTAAAAAGGTTAAATCATCCAAATTGTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGA-ACTAAAGAGGTTAACTTATCC-AATTGTT
* * * * *
781998 AAATTACTGGATGGATGCTTAAATAAG-GT
64 ACATTAATGGATGGAAGTTTGAAT-AGCGT
* * * * * *
782027 TGAAATGTATTAACTAAATAGTTTGATGTTTATGGAGTAAAGAGGTTAACTTATCCAATTTGTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAA-TTGTTA
* ** *
782092 TATTAATGGATACAAGTTTGAACAGCGT
65 CATTAATGGATGGAAGTTTGAATAGCGT
* * ** *
782120 TCAAAATGTCTTTACTAGTCACTTTGAAT-TTTAC-AGACTAAA-AGGTTAACTTATCCAAATGT
1 T-GAAATGTCTTAACTAAACACTTTG-ATGTTTACGA-ACTAAAGAGGTTAACTTATCCAATTGT
* * *
782182 TACAGTAATGGATGAAAGTTTGAATAGTGT
63 TACATTAATGGATGGAAGTTTGAATAGCGT
* * * * * *
782212 TGAAATTTCTCAAGTAAACATTTTGATGTTTACGAACTAAAGAGATTAACTTATCTAATTTGTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAA-TTGTTA
* * * * * *
782277 CATAAATAGTTGGACGTTTGAATATCAT
65 CATTAATGGATGGAAGTTTGAATAGCGT
* * * * ** * * * * *
782305 TGAAA--TCTTAAATAAATA-TTTACATATTTTTTG-ACTAAAAATGATATCTTCTCCAAATTGT
1 TGAAATGTCTTAACTAAACACTTT-GAT-GTTTACGAACTAAAGAGGTTAACTTATCC-AATTGT
* * *
782366 TACATTATTGGATGGAGGTTTGAATAGCAT
63 TACATTAATGGATGGAAGTTTGAATAGCGT
* * * * * ** *
782396 TGAAATGTATTAAGTAAACACTTTGACGTTTACTGGA-TAAAAATATTAACTTATCCAAGTTTTT
1 TGAAATGTCTTAACTAAACACTTTGATGTTTAC-GAACTAAAGAGGTTAACTTATCCAA--TTGT
* * * * *
782460 TAAAATAATGGATGGAATTTTTAATAGTGT
63 TACATTAATGGATGGAAGTTTGAATAGCGT
* *
782490 TGAAATGTCTTTACTATACACTTTGATG
1 TGAAATGTCTTAACTAAACACTTTGATG
782518 CTTATAAAAC
Statistics
Matches: 1095, Mismatches: 271, Indels: 103
0.75 0.18 0.07
Matches are distributed among these distances:
90 5 0.00
91 93 0.08
92 277 0.25
93 624 0.57
94 94 0.09
95 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (92 bp):
TGAAATGTCTTAACTAAACACTTTGATGTTTACGAACTAAAGAGGTTAACTTATCCAATTGTTAC
ATTAATGGATGGAAGTTTGAATAGCGT
Found at i:781213 original size:243 final size:243
Alignment explanation
Indices: 780766--781214 Score: 620
Period size: 243 Copynumber: 1.8 Consensus size: 243
780756 AATAGCGTTT
* * * * *
780766 AAATGTCTTAAATAAACACTTTGATGTTTAATGACTAAAGAGGTTTATTTATCCAAGTTGTTACA
1 AAATGTCTTAAATAAACACCTTGATGTTTAACGACTAAAGAGGTTAACTTATCCAAGTTGTGACA
* * * *
780831 TTAATGGATGGAAGTTTGAATAGGGTTGAAATATCTTAACTAAACACTTTGATGTTTACAGACTA
66 TTAATGGATGGAAGTTTGAATAGCGTTGAAATATATTAACAAAACACTTTGATATTTACAGACTA
* * * * * *
780896 AAAAGATTAACTTATCCAAGTTGTTACATTAATGGCTGGAAGTTTGAATATCACTGATATGTCTT
131 AAAAGATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATATCAATGAAATCTCTT
780961 AACTAAACACTCAAACATTTATGGACTAAAGAGGATAACATATCGCTG
196 AACTAAACACTCAAACATTTATGGACTAAAGAGGATAACATATCGCTG
* *
781009 AAATGTCTTAACTAAACACCTTGATG-TTGACGAACTAAAGAGGTTAACTTATCCAA-TATGTGA
1 AAATGTCTTAAATAAACACCTTGATGTTTAACG-ACTAAAGAGGTTAACTTATCCAAGT-TGTGA
* *
781072 CATTAATTGATGGAAGTTTGAATAGCGTTGAAATGTATTAACAAAACACTTTGATATTTAC-GAA
64 CATTAATGGATGGAAGTTTGAATAGCGTTGAAATATATTAACAAAACACTTTGATATTTACAG-A
*
781136 CTATAAAA-ATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAT-AATTAAAGT
128 CTA-AAAAGATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATATCAATGAAA-T
**
781199 CTCTTAGGTAAACACT
191 CTCTTAACTAAACACT
781215 TTTATGTTTA
Statistics
Matches: 179, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
242 10 0.06
243 165 0.92
244 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (243 bp):
AAATGTCTTAAATAAACACCTTGATGTTTAACGACTAAAGAGGTTAACTTATCCAAGTTGTGACA
TTAATGGATGGAAGTTTGAATAGCGTTGAAATATATTAACAAAACACTTTGATATTTACAGACTA
AAAAGATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATATCAATGAAATCTCTT
AACTAAACACTCAAACATTTATGGACTAAAGAGGATAACATATCGCTG
Found at i:781303 original size:336 final size:336
Alignment explanation
Indices: 780671--781307 Score: 793
Period size: 336 Copynumber: 1.9 Consensus size: 336
780661 TGAATATTGT
* * * * * * *
780671 TGAAATGTATTAATTAAACACTTTGATGTTTACGGACCAAATAGTTTAACTTATCCAAGTTGTTA
1 TGAAATGTATTAACTAAACACCTTGATGTTGACGAACCAAAGAGGTTAACTTATCCAAGTTGTGA
* * * * *
780736 CATTAATGTATATAAGTTTGAATAGCGTTTAAATGTCTTAAATAAACACTTTGATGTTTAATGAC
66 CATTAATGTATAGAAGTTTGAATAGCGTTGAAATGTATTAAATAAACACTTTGATATTTAACGAC
** * ** * **
780801 TAAAGAGGTTTATTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAGGGTTGAAATATC
131 TAAAGAAATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGAATTGAAATATC
* * *
780866 TTAACTAAACACTTTGATGTTTACAGACTAAAAAGATTAACTTATCCAAGTTGTTACATTAATGG
196 TTAACTAAACACTTTGATGTTTACAGACTAAAAAGATCAACTTATCCAAATTGTTACAATAATGG
* * * *
780931 CTGGAAGTTTGAATATCACTGATATGTCTTAACTAAACACTCAAACATTTATGGACTAAAGAGGA
261 ATGGAAGTTTGAATATCACTAAAATGTCTAAACTAAACACTCAAACATTTATGGACTAAAGAGGA
780996 TAACATATCGC
326 TAACATATCGC
* *
781007 TGAAATGTCTTAACTAAACACCTTGATGTTGACGAACTAAAGAGGTTAACTTATCCAA-TATGTG
1 TGAAATGTATTAACTAAACACCTTGATGTTGACGAACCAAAGAGGTTAACTTATCCAAGT-TGTG
*
781071 ACATTAAT-TGATGGAAGTTTGAATAGCGTTGAAATGTATTAACA-AAACACTTTGATATTT-AC
65 ACATTAATGT-ATAGAAGTTTGAATAGCGTTGAAATGTATTAA-ATAAACACTTTGATATTTAAC
*
781133 GAACTATAA-AAATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATATAATT-AA
128 G-ACTA-AAGAAATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGAATTGAA
* ** * * * *
781196 AGTCTCTTAGGTAAACACTTTTATGTTTACAGGCTAAAGAGGTCAACTTATCCAAATTGTTACAA
191 A-TATCTTAACTAAACACTTTGATGTTTACAGACTAAAAAGATCAACTTATCCAAATTGTTACAA
* * *
781261 TAATTGATGGAAGTTTGAATA-GAGTTAAAATGTCTAAACTAAACACT
255 TAATGGATGGAAGTTTGAATATCA-CTAAAATGTCTAAACTAAACACT
781308 TTGATGTTTA
Statistics
Matches: 253, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
335 8 0.03
336 242 0.96
337 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35
Consensus pattern (336 bp):
TGAAATGTATTAACTAAACACCTTGATGTTGACGAACCAAAGAGGTTAACTTATCCAAGTTGTGA
CATTAATGTATAGAAGTTTGAATAGCGTTGAAATGTATTAAATAAACACTTTGATATTTAACGAC
TAAAGAAATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATAGAATTGAAATATC
TTAACTAAACACTTTGATGTTTACAGACTAAAAAGATCAACTTATCCAAATTGTTACAATAATGG
ATGGAAGTTTGAATATCACTAAAATGTCTAAACTAAACACTCAAACATTTATGGACTAAAGAGGA
TAACATATCGC
Found at i:781707 original size:185 final size:184
Alignment explanation
Indices: 781007--782517 Score: 828
Period size: 185 Copynumber: 8.2 Consensus size: 184
780997 AACATATCGC
* * *
781007 TGAAATGTCTTAACTAAACACCTTGATGT-TGA-CGAACTAAAGAGGTTAACTTATCCAA-TATG
1 TGAAATGTCTTAACTAAACACTTTGATGTAT-ATTG-A-TAAAAAGGTTAA-TTATCCAAGT-TG
* * * * * * * * *
781069 TGACATTAATTGATGGAAGTTTGAATAGCGTTGAAATGTATTAACAAAACACTTTGATATTTA-C
61 TTACAATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATA
*** * *
781133 GAACTATAA-AAATTAACATATCCAAGTTGTTACATTAATGGATGAAAGTTTGAATATA-AT
126 G-ACTA-AAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATA-ACAT
* ** * * ** * * * *
781193 T-AAAGTCTCTTAGGTAAACACTTTTATGTTTACAGGCTAAAGAGGTCAACTTATCCAAATTGTT
1 TGAAA-TGTCTTAACTAAACACTTTGATGTATA-TTGATAAAAAGGTTAA-TTATCCAAGTTGTT
* * * * * *
781257 ACAATAATTGATGGAAGTTTGAATAG-AGTTAAAATGTCTAAACTAAACACTTTGATGTTTACAA
63 ACAATAATGGATGCAAGTTTGAATAGCA-TTGAAATGTCTTAACTAAACACTTTGATGTTTATAG
* * * **
781321 ACTAGAGAGGTTAACTTATCCAAGTTGTTACATTAATGGAT-GAAATTTGAATTGCAT
127 ACTAAAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
** * * * * * * * ** *
781378 TGAAACATCTTAACTAAACACTTTGATATTTATAGGCTATAGAGATTAACACATCCAAGTTTTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTATAT-TGATAAAAAGGTTAA-TTATCCAAGTTGTTA
* * * * * * ** * * * * * * *
781443 CATTAATGGAAGGAAATATAAATAATATTGAAATGTGTGAACTAAAAAATTTGATCTTTACAAAC
64 CAATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATAGAC
**** * *
781508 -AACAACAATTAACTTATCAAAGTTGTTACATTAATGGATGCAAGTTTGAATAACAT
129 TAA-AGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
*
781564 TGAAATGTCATAACTAAAC-CGTTTGATGTATA-TGA-AATAAGAGGTTGAATTATCCAAGTAT-
1 TGAAATGTCTTAACTAAACAC-TTTGATGTATATTGATAA-AA-AGGTT-AATTATCCAAGT-TG
* ** * * **
781625 TTACAATAATGTATAG-AAGTTTGAATAGTGTTGCAATGTCTTATCTGCACACTTTGATGTTTAT
61 TTACAATAATGGAT-GCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTAT
* * * ***
781689 AGACTAAA-TATGTTAACTTATCCATGTTGTTACATTAATGCATGGAAGTTTGAATAGTGT
125 AGACTAAAGT-GGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
* * * **
781749 TGAAATGTCTTTACTGAACACTTTGATGTTTATTGATTAAAAAGGTTAATTATCTGAGTTGTTAC
1 TGAAATGTCTTAACTAAACACTTTGATGTATATTGA-TAAAAAGGTTAATTATCCAAGTTGTTAC
* * * * * *
781814 ATTAATGGATGCAATTTTGAATAGCATTGAAATGTTTTAACTAAATACTTTGATGTTTATGGGCT
65 AATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATAGACT
* * * * *
781879 AAAGTGGTTAACATATCCAAGTTCTTACATTAATGGATGGAAGTTTCAA-AAGAGA
130 AAAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACA-T
* ** * *
781934 TGAAATGTCTTAACTAAACACTTTGATGTTTACAGACTAAAAAGGTTAAATCATCCAAATTGTTA
1 TGAAATGTCTTAACTAAACACTTTGATGTATATTGA-TAAAAAGGTT-AATTATCCAAGTTGTTA
* * * * * * * * * *
781999 -AATTACTGGATGGATGCTTAAATAAG-GTTGAAATGTATTAACTAAATAGTTTGATGTTTATGG
64 CAA-TAATGGATGCAAGTTTGAAT-AGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATAG
* * * * ** * * *
782062 AGTAAAGAGGTTAACTTATCCAATTTGTTATATTAATGGATACAAGTTTGAACAGCGT
127 ACTAAAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
* * ** * ** *
782120 TCAAAATGTCTTTACTAGTCACTTTGAAT-TTTACAGACT-AAAAGGTTAACTTATCCAA-ATGT
1 T-GAAATGTCTTAACTAAACACTTTG-ATGTATATTGA-TAAAAAGGTTAA-TTATCCAAGTTGT
* * ** * * * * *
782182 TACAGTAATGGATGAAAGTTTGAATAGTGTTGAAATTTCTCAAGTAAACATTTTGATGTTTA-CG
62 TACAATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATAG
* * * * * * * * *
782246 AACTAAAGAGATTAACTTATCTAATTTGTTACATAAATAGTTGGACGTTTGAATATCAT
127 -ACTAAAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
* * * * * * * * * * *
782305 TGAAA--TCTTAAATAAATA-TTTACATATTTTTTGACTAAAAATGATATCTTCTCCAAATTGTT
1 TGAAATGTCTTAACTAAACACTTT-GATGTATATTGA-TAAAAAGGTTA-ATTATCCAAGTTGTT
* * * * * * * *
782367 ACATTATTGGATGGAGGTTTGAATAGCATTGAAATGTATTAAGTAAACACTTTGACGTTTACTGG
63 ACAATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTA-TAG
* * * * * * * ***
782432 A-TAAAAAT-ATTAACTTATCCAAGTTTTTTAAAATAATGGATGGAATTTTTAATAGTGT
127 ACT-AAAGTGGTTAACTTATCCAAG-TTGTTACATTAATGGATGGAAGTTTGAATAACAT
* *
782490 TGAAATGTCTTTACTATACACTTTGATG
1 TGAAATGTCTTAACTAAACACTTTGATG
782518 CTTATAAAAC
Statistics
Matches: 1026, Mismatches: 247, Indels: 103
0.75 0.18 0.07
Matches are distributed among these distances:
181 5 0.00
182 15 0.01
183 15 0.01
184 80 0.08
185 545 0.53
186 310 0.30
187 48 0.05
188 8 0.01
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (184 bp):
TGAAATGTCTTAACTAAACACTTTGATGTATATTGATAAAAAGGTTAATTATCCAAGTTGTTACA
ATAATGGATGCAAGTTTGAATAGCATTGAAATGTCTTAACTAAACACTTTGATGTTTATAGACTA
AAGTGGTTAACTTATCCAAGTTGTTACATTAATGGATGGAAGTTTGAATAACAT
Found at i:781724 original size:278 final size:275
Alignment explanation
Indices: 781007--782279 Score: 765
Period size: 278 Copynumber: 4.6 Consensus size: 275
780997 AACATATCGC
* * * * * *
781007 TGAAATGTCTTAACTAAACACCTTGATGTTGACGAACTAAAGAGGTTAACTTATCCAA-TATGTG
1 TGAAATGTC-TAACTAAAC-CTTTGATGTTTATGAAAT-AAGAGGTTAACTTATCCAAGT-TCTT
* * * * * *
781071 ACATTAATTGATGGAAGTTTGAATAGCGTTGAAATGTATTAACAAAACACTTTGATATTTA-CGA
62 ACATTAATGGAT-GAAGTTTGAATAGAGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAG-
* * * * * *
781135 ACTATAA-AAATTAACATATCCAAGTTGTTACATTAATG-GATGAAAGTTTGAAT-ATAATT-AA
125 ACTA-AAGAGATTAACACATCCAAGTTGTTACATTAATGCAAGGAAA-TATAAATAAT-ATTGAA
* * ** * * * * ** * * *
781196 AGTCTCTTAGGTAAACACTTTTATGTTTA-CAGGCTAAAGAGGTCAACTTATCCAAA-TTGTTAC
187 A-TGTCTGAACTAAAAAATTTGATCTTTATCAAAC-AAAAAGATTAACTTAT-CAAAGTTGTTAC
* * * *
781259 AATAATTGATGGAAGTTTGAATAGA-GT
249 ATTAATGGATGCAAGTTTGAATA-ACAT
* * *
781286 TAAAATGTCTAAACTAAACACTTTGATGTTTA-CAAACTAGAGAGGTTAACTTATCCAAGTTGTT
1 TGAAATGTCT-AACTAAAC-CTTTGATGTTTATGAAA-TA-AGAGGTTAACTTATCCAAGTTCTT
* * ** * *
781350 ACATTAATGGATGAAATTTGAATTGCA-TTGAAACATCTTAACTAAACACTTTGATATTTATAGG
62 ACATTAATGGATGAAGTTTGAATAG-AGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAGA
* * *
781414 CTATAGAGATTAACACATCCAAGTTTTTACATTAATGGAAGGAAATATAAATAATATTGAAATGT
126 CTAAAGAGATTAACACATCCAAGTTGTTACATTAATGCAAGGAAATATAAATAATATTGAAATGT
*
781479 GTGAACTAAAAAATTTGATCTTTA-CAAACAACAACA-ATTAACTTATCAAAGTTGTTACATTAA
191 CTGAACTAAAAAATTTGATCTTTATCAAACAA-AA-AGATTAACTTATCAAAGTTGTTACATTAA
781542 TGGATGCAAGTTTGAATAACAT
254 TGGATGCAAGTTTGAATAACAT
*
781564 TGAAATGTCATAACTAAACCGTTTGATGTATATGAAATAAGAGGTTGAA-TTATCCAAGTAT-TT
1 TGAAATGTC-TAACTAAACC-TTTGATGTTTATGAAATAAGAGGTT-AACTTATCCAAGT-TCTT
* * * * * **
781627 ACAATAATGTATAGAAGTTTGAATAGTGTTGCAATGTCTTATCTGCACACTTTGATGTTTATAGA
62 ACATTAATGGAT-GAAGTTTGAATAGAGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAGA
* ** * * * * * * *
781692 CTAAATATG-TTAACTTATCCATGTTGTTACATTAATGCATGGAAGTTTGAATAGTGTTGAAATG
126 CTAAAGA-GATTAACACATCCAAGTTGTTACATTAATGCAAGGAAATATAAATAATATTGAAATG
** * * * * ** ** * **
781756 TCTTTACTGAACACTTTGATGTTTATTGATTAAAAAGGTTAA-TTATCTGAGTTGTTACATTAAT
190 TCTGAACTAAAAAATTTGATCTTTATCAAACAAAAAGATTAACTTATCAAAGTTGTTACATTAAT
* *
781820 GGATGCAATTTTGAATAGCAT
255 GGATGCAAGTTTGAATAACAT
* * *** * *
781841 TGAAATGTTTTAACTAAATACTTTGATGTTTATGGGCTAAAGTGGTTAACATATCCAAGTTCTTA
1 TGAAATG-TCTAACTAAA-CCTTTGATGTTTATGAAAT-AAGAGGTTAACTTATCCAAGTTCTTA
* * * *
781906 CATTAATGGATGGAAGTTTCAAAAGAGATGAAATGTCTTAACTAAACACTTTGATGTTTACAGAC
63 CATTAATGGAT-GAAGTTTGAATAGAGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAGAC
* * * * * * * ** **
781971 TAAAAAGGTTAA-ATCATCCAAATTGTTAAATTACTGGATGGATGCT-TAAATAAGGTTGAAATG
127 TAAAGAGATTAACA-CATCCAAGTTGTTACATTAATGCAAGGA-AATATAAATAATATTGAAATG
* * * * * ** ** * * * * *
782034 TATTAACTAAATAGTTTGATGTTTATGGAGTAAAGAGGTTAACTTATCCAATTTGTTATATTAAT
190 TCTGAACTAAAAAATTTGATCTTTATCAAACAAAAAGATTAACTTATCAAAGTTGTTACATTAAT
* * * *
782099 GGATACAAGTTTGAACAGCGT
255 GGATGCAAGTTTGAATAACAT
* * ** * * * * *
782120 TCAAAATGTCTTTACTAGTCACTTTGAAT-TTTA-CAGACTAAAAGGTTAACTTATCCAA-ATGT
1 T-GAAATGTC-TAACTAAAC-CTTTG-ATGTTTATGA-AATAAGAGGTTAACTTATCCAAGTTCT
* * * * * * *
782182 TACAGTAATGGATGAAAGTTTGAATAGTGTTGAAATTTCTCAAGTAAACATTTTGATGTTTA-CG
61 TACATTAATGGATG-AAGTTTGAATAGAGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAG
** * *
782246 AACTAAAGAGATTAACTTATCTAATTTGTTACAT
125 -ACTAAAGAGATTAACACATCCAAGTTGTTACAT
782280 AAATAGTTGG
Statistics
Matches: 786, Mismatches: 167, Indels: 83
0.76 0.16 0.08
Matches are distributed among these distances:
277 112 0.14
278 516 0.66
279 134 0.17
280 22 0.03
281 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (275 bp):
TGAAATGTCTAACTAAACCTTTGATGTTTATGAAATAAGAGGTTAACTTATCCAAGTTCTTACAT
TAATGGATGAAGTTTGAATAGAGTTGAAATGTCTTAACTAAACACTTTGATGTTTATAGACTAAA
GAGATTAACACATCCAAGTTGTTACATTAATGCAAGGAAATATAAATAATATTGAAATGTCTGAA
CTAAAAAATTTGATCTTTATCAAACAAAAAGATTAACTTATCAAAGTTGTTACATTAATGGATGC
AAGTTTGAATAACAT
Found at i:782845 original size:93 final size:91
Alignment explanation
Indices: 782525--783260 Score: 455
Period size: 93 Copynumber: 8.0 Consensus size: 91
782515 ATGCTTATAA
* * * * * * * * * *
782525 AACTAAACACTTTGATATTTATGGACTTTAAAGATTAACTTATCTAATTTGTCAAATTAAAGGAT
1 AACTAAACACTTTGATGTTTATGGTC-TAAAAGGTTAAGTTATCCAAGTTGTTACATTAATGGAT
**
782590 GGAAGTTTGAATATCATTG-AATGCCTT
65 GGAAGTTTGAATA-CATTGAAATATCTT
* * ** * * * *
782617 AACTAAACACATTGATGATTATGAACTAAAGAAGTTAACTTATACAAGTTGTTATATTAATGGAT
1 AACTAAACACTTTGATGTTTATGGTCTAAA-AGGTTAAGTTATCCAAGTTGTTACATTAATGGAT
* * * *
782682 AGAAG-TTCAAT-CGTGTTGAAATGTCTT
65 GGAAGTTTGAATAC--ATTGAAATATCTT
* * * ** * * * * * * *
782709 TATTGAACACTTTGATGTTTA-CATATTAAAGAATTCAACTTATCCAAATGGTTACTTTAATGGA
1 AACTAAACACTTTGATGTTTATGGTCTAAAAG-GTT-AAGTTATCCAAGTTGTTACATTAATGGA
*
782773 TGGAAGTTTGAATAAAGTTGAAATATCTT
64 TGGAAGTTTGAATACA-TTGAAATATCTT
* ** * * *
782802 AACTAAACACTTTAAAATTTATGGTCTTAATAGGTGAAGTTATCCATGTTGTTACATTAATGGAT
1 AACTAAACACTTTGATGTTTATGGTC-TAAAAGGTTAAGTTATCCAAGTTGTTACATTAATGGAT
* * ** *
782867 GCAAGTTTGAATTGCATTGAAACGTATT
65 GGAAGTTTGAA-TACATTGAAATATCTT
* * * * * *
782895 AACTAAACACTTTGATGTTTATGGACTAAAAGGGTTAACTCATCCCATTTGTTACATTAGTGGAT
1 AACTAAACACTTTGATGTTTATGGTCTAAAA-GGTTAAGTTATCCAAGTTGTTACATTAATGGAT
*
782960 GGAAGTTTGAATAGCATTGGAATATCTT
65 GGAAGTTTGAATA-CATTGAAATATCTT
* * * * * *
782988 AACTAAATACTTTGATGTTTATGGTATAAGAGGTTAAGTTATGCAAGTTTTTACATTAATGGATA
1 AACTAAACACTTTGATGTTTATGGTCTAAAAGGTTAAGTTATCCAAGTTGTTACATTAATGGATG
* * *
783053 GAAGTTTGAGTAGAGTTGAAATTTCTT
66 GAAGTTTGAATACA-TTGAAATATCTT
* * *** * * * * *
783080 AATTAAACATTTTGATGTTTACCAAT-T-AAAGAATTTAGCTAATCCAATTTGTTTCATTAATGG
1 AACTAAACACTTTGATGTTTA-TGGTCTAAAAG-GTTAAG-TTATCCAAGTTGTTACATTAATGG
* * *
783143 ATGGAAG-TTGAATAGAATTTAAAATGTCTTT
63 ATGGAAGTTTGAATA-CA-TTGAAATATC-TT
** * * **
783174 AA-TAAACACTTTGATGTTTAAAGACTAAATAAGTTAACATATCCAAGTTGTTAC-TTAATGGAT
1 AACTAAACACTTTGATGTTTATGGTCTAAA-AGGTTAAGTTATCCAAGTTGTTACATTAATGGAT
* *
783237 GTAAGTTTGAATATCCTTGAAATA
65 GGAAGTTTGAATA-CATTGAAATA
783261 CAATAGGAGA
Statistics
Matches: 486, Mismatches: 134, Indels: 48
0.73 0.20 0.07
Matches are distributed among these distances:
89 1 0.00
90 1 0.00
91 21 0.04
92 204 0.42
93 241 0.50
94 13 0.03
95 5 0.01
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (91 bp):
AACTAAACACTTTGATGTTTATGGTCTAAAAGGTTAAGTTATCCAAGTTGTTACATTAATGGATG
GAAGTTTGAATACATTGAAATATCTT
Found at i:783259 original size:185 final size:184
Alignment explanation
Indices: 782552--783259 Score: 598
Period size: 185 Copynumber: 3.8 Consensus size: 184
782542 TTTATGGACT
* * * * * ** **
782552 TTAAAG-A-TTAACTTATCTAATTTGTCAAATTAAAGGATGGAAGTTTGAATATCATTG-AATGC
1 TTAAAGAATTTAACTAATCCAATTTGTTACATTAATGGATGGAAGTTTGAATAGAATTGAAATAT
* * * *
782614 CTTAACTAAACACATTGATGATTATGAACTAAAGAAGTTAACTTATACAAGTTGTTATATTAATG
66 CTTAACTAAACACTTTGATGTTTATG-ACTAAAGAAGTTAACTTATCCAAGTTGTTACATTAATG
* * * *
782679 GATAGAAG-TTCAATCGT-GTTGAAATGTCTTTATTGAACACTTTGATGTTTACATA
130 GATAGAAGTTTGAAT-ATCGTTGAAATGTCTTAATTAAACACTTTGATGTTTACA-A
* * * * *
782734 TTAAAGAATTCAACTTATCCAAATGGTTACTTTAATGGATGGAAGTTTGAATA-AAGTTGAAATA
1 TTAAAGAATTTAACTAATCCAATTTGTTACATTAATGGATGGAAGTTTGAATAGAA-TTGAAATA
* ** * * * * * * *
782798 TCTTAACTAAACACTTTAAAATTTATGGTCTTAATAGGTGAAGTTATCCATGTTGTTACATTAAT
65 TCTTAACTAAACACTTTGATGTTTAT-GACTAAAGAAGTTAACTTATCCAAGTTGTTACATTAAT
* * * * **
782863 GGAT-GCAAGTTTGAAT-TGCATTGAAACGTATTAACTAAACACTTTGATGTTTATGGA
129 GGATAG-AAGTTTGAATAT-CGTTGAAATGTCTTAATTAAACACTTTGATGTTTA-CAA
* ** * * * * *
782920 CTAAA-AGGGTTAACTCATCCCATTTGTTACATTAGTGGATGGAAGTTTGAATAGCATTGGAATA
1 TTAAAGA-ATTTAACTAATCCAATTTGTTACATTAATGGATGGAAGTTTGAATAGAATTGAAATA
* * * * * *
782984 TCTTAACTAAATACTTTGATGTTTATG-GTATAAGAGGTTAAGTTATGCAAGTTTTTACATTAAT
65 TCTTAACTAAACACTTTGATGTTTATGACTA-AAGAAGTTAACTTATCCAAGTTGTTACATTAAT
* ** * *
783048 GGATAGAAGTTTGAGTAGAGTTGAAATTTCTTAATTAAACATTTTGATGTTTACCAA
129 GGATAGAAGTTTGAATATCGTTGAAATGTCTTAATTAAACACTTTGATGTTTA-CAA
* * * *
783105 TTAAAGAATTTAGCTAATCCAATTTGTTTCATTAATGGATGGAAG-TTGAATAGAATTTAAAATG
1 TTAAAGAATTTAACTAATCCAATTTGTTACATTAATGGATGGAAGTTTGAATAGAA-TTGAAATA
* * *
783169 TCTTTAA-TAAACACTTTGATGTTTAAAGACTAAATAAGTTAACATATCCAAGTTGTTAC-TTAA
65 TC-TTAACTAAACACTTTGATGTTT-ATGACTAAAGAAGTTAACTTATCCAAGTTGTTACATTAA
*
783232 TGGAT-GTAAGTTTGAATATCCTTGAAAT
128 TGGATAG-AAGTTTGAATATCGTTGAAAT
783260 ACAATAGGAG
Statistics
Matches: 411, Mismatches: 94, Indels: 39
0.76 0.17 0.07
Matches are distributed among these distances:
182 6 0.01
183 2 0.00
184 52 0.13
185 214 0.52
186 134 0.33
187 3 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (184 bp):
TTAAAGAATTTAACTAATCCAATTTGTTACATTAATGGATGGAAGTTTGAATAGAATTGAAATAT
CTTAACTAAACACTTTGATGTTTATGACTAAAGAAGTTAACTTATCCAAGTTGTTACATTAATGG
ATAGAAGTTTGAATATCGTTGAAATGTCTTAATTAAACACTTTGATGTTTACAA
Found at i:789482 original size:20 final size:20
Alignment explanation
Indices: 789457--789506 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
789447 TTGGTCCAGA
*
789457 AGTATCGATATTGTTCTTAC
1 AGTATCGATATTGTTCATAC
*
789477 AGTATCGATATTGTTCATAT
1 AGTATCGATATTGTTCATAC
*
789497 AGTACCGATA
1 AGTATCGATA
789507 CTAAAGGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (20 bp):
AGTATCGATATTGTTCATAC
Found at i:789631 original size:20 final size:21
Alignment explanation
Indices: 789606--789645 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
789596 CTTTGTATAG
789606 TAGTATCGATACCAT-AGGCA
1 TAGTATCGATACCATCAGGCA
789626 TAGTATCGATACCATCAGGC
1 TAGTATCGATACCATCAGGC
789646 CCCACTGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (21 bp):
TAGTATCGATACCATCAGGCA
Found at i:795000 original size:24 final size:24
Alignment explanation
Indices: 794939--795040 Score: 84
Period size: 24 Copynumber: 4.3 Consensus size: 24
794929 TTTATCTTAT
*
794939 TTTC-GATTTGAATTCTGTTCTGA
1 TTTCTGATCTGAATTCTGTTCTGA
* * *
794962 TATATGACCT-AGATTCTGTTCTGA
1 TTTCTGATCTGA-ATTCTGTTCTGA
* * *
794986 TTTCTGATTTGGATTATGTTCTGA
1 TTTCTGATCTGAATTCTGTTCTGA
* *
795010 TATT-TAATCTGAATTCTGTTTTGA
1 T-TTCTGATCTGAATTCTGTTCTGA
795034 TTTCTGA
1 TTTCTGA
795041 CATCTCCGTT
Statistics
Matches: 58, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
23 5 0.09
24 51 0.88
25 2 0.03
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.51
Consensus pattern (24 bp):
TTTCTGATCTGAATTCTGTTCTGA
Found at i:795026 original size:48 final size:48
Alignment explanation
Indices: 794939--795040 Score: 127
Period size: 48 Copynumber: 2.1 Consensus size: 48
794929 TTTATCTTAT
* *
794939 TTTC-GATTTGAATTCTGTTCTGATATATGACCTAGATTCTGTTCTGA
1 TTTCTGATTTGAATTATGTTCTGATATATAACCTAGATTCTGTTCTGA
* * * *
794986 TTTCTGATTTGGATTATGTTCTGATATTTAATCT-GAATTCTGTTTTGA
1 TTTCTGATTTGAATTATGTTCTGATATATAACCTAG-ATTCTGTTCTGA
795034 TTTCTGA
1 TTTCTGA
795041 CATCTCCGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 5 0.11
48 42 0.89
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.51
Consensus pattern (48 bp):
TTTCTGATTTGAATTATGTTCTGATATATAACCTAGATTCTGTTCTGA
Found at i:798193 original size:39 final size:39
Alignment explanation
Indices: 798145--798297 Score: 155
Period size: 39 Copynumber: 3.9 Consensus size: 39
798135 GGGTAAGTCC
* *
798145 TTACCGTATGTTCCTTTGCTTTGTGCATAGGGGAAAACT
1 TTACTGTATGCTCCTTTGCTTTGTGCATAGGGGAAAACT
* * *
798184 TTAATGTATGCTCCTTTGCTTGGTGCATAGGGGAAGACT
1 TTACTGTATGCTCCTTTGCTTTGTGCATAGGGGAAAACT
* * * **
798223 TTACTTTCTGCTCCTTTACTTCT-TGCATACAGGAAAACT
1 TTACTGTATGCTCCTTTGCTT-TGTGCATAGGGGAAAACT
* * * * *
798262 TTACTGTTTTCTCTTTTGCTTTGTGCGTAGGAGAAA
1 TTACTGTATGCTCCTTTGCTTTGTGCATAGGGGAAA
798298 TATGTATGGA
Statistics
Matches: 90, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 89 0.99
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (39 bp):
TTACTGTATGCTCCTTTGCTTTGTGCATAGGGGAAAACT
Found at i:801543 original size:16 final size:16
Alignment explanation
Indices: 801501--801543 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
801491 CCGACAAAAT
*
801501 TTCACTATTCATGAAA
1 TTCACTATTCACGAAA
* *
801517 TTCAATGTTCACGAAA
1 TTCACTATTCACGAAA
801533 TTCACTATTCA
1 TTCACTATTCA
801544 TGTGAATAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (16 bp):
TTCACTATTCACGAAA
Found at i:809362 original size:27 final size:27
Alignment explanation
Indices: 809321--809377 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
809311 GGATCAACAT
* *
809321 TTTTGCATCTTCATTTGCATCTTTACA
1 TTTTGCATCTGCATTTGCATCATTACA
* *
809348 TTTTGCGTCTGCATTTGCATCATTGCA
1 TTTTGCATCTGCATTTGCATCATTACA
809375 TTT
1 TTT
809378 GTATTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.16, C:0.21, G:0.12, T:0.51
Consensus pattern (27 bp):
TTTTGCATCTGCATTTGCATCATTACA
Found at i:814912 original size:91 final size:90
Alignment explanation
Indices: 814700--815063 Score: 584
Period size: 90 Copynumber: 4.0 Consensus size: 90
814690 GCTAATGTGT
* *
814700 TTTTAAAAACTAAGCCTTCGTGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
1 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
* *
814765 CATTGCAGGATATTTTCAAATGAGA
66 CAGTGCAGGATGTTTTCAAATGAGA
*
814790 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCAGGCCATCCATAAGACCTT
1 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
*
814855 CAGTGCATGATGGTTTTCAAATGAGA
66 CAGTGCAGGAT-GTTTTCAAATGAGA
*
814881 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCGTAAGACCTT
1 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
* *
814946 CAGTGCATGATGTTTTCAAATTAGA
66 CAGTGCAGGATGTTTTCAAATGAGA
* * * ** *
814971 TTTTAGAAACTAAGCCTTCGGGTGTTTTTTGATTTATAAGTCCTTCGGATCATCCAAAAGACCTT
1 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
815036 CAGTGCAGGATGTTTTCAAATGAGA
66 CAGTGCAGGATGTTTTCAAATGAGA
815061 TTT
1 TTT
815064 AAGTCTTCAG
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
90 168 0.66
91 87 0.34
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (90 bp):
TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
CAGTGCAGGATGTTTTCAAATGAGA
Found at i:815013 original size:181 final size:180
Alignment explanation
Indices: 814700--815063 Score: 586
Period size: 181 Copynumber: 2.0 Consensus size: 180
814690 GCTAATGTGT
*
814700 TTTTAAAAACTAAGCCTTCGTGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
1 TTTTAAAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
* *
814765 CATTGCAGGATATTTTCAAATGAGATTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAG
66 CAGTGCAGGATATTTTCAAATGAGATTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTATAAG
* *
814830 TCCTTCAGG-CCATCCATAAGACCTTCAGTGCATGATGGTTTTCAAATGAGA
131 TCCTTC-GGACCATCCAAAAGACCTTCAGTGCAGGAT-GTTTTCAAATGAGA
* *
814881 TTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCGTAAGACCTT
1 TTTTAAAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
* * * * *
814946 CAGTGCATGATGTTTTCAAATTAGATTTTAGAAACTAAGCCTTCGGGTGTTTTTTGATTTATAAG
66 CAGTGCAGGATATTTTCAAATGAGATTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTATAAG
*
815011 TCCTTCGGATCATCCAAAAGACCTTCAGTGCAGGATGTTTTCAAATGAGA
131 TCCTTCGGACCATCCAAAAGACCTTCAGTGCAGGATGTTTTCAAATGAGA
815061 TTT
1 TTT
815064 AAGTCTTCAG
Statistics
Matches: 169, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
180 19 0.11
181 150 0.89
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (180 bp):
TTTTAAAAACTAAGCCTTCGGGGGTTTCTTGATTTGTAAGTCCTTCGGGCCATCCATAAGACCTT
CAGTGCAGGATATTTTCAAATGAGATTTTAGAAACTAAGCCTTCGGGGGTTTCTTGATTTATAAG
TCCTTCGGACCATCCAAAAGACCTTCAGTGCAGGATGTTTTCAAATGAGA
Found at i:815390 original size:137 final size:135
Alignment explanation
Indices: 815200--815776 Score: 879
Period size: 137 Copynumber: 4.2 Consensus size: 135
815190 AATGTTTTCA
*
815200 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCTGACAGATGGAGAAGAAGTTCATAAT
1 ACATTTCCAAATGAGAGTTCATAATGAGAAGAACTCATCTGACAGA-GGAGAAGAAGTTCATAAT
*
815265 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTTGAG
65 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCTTGAG
815330 GGATTG
130 GGATTG
* * *
815336 ACATTTCCAAATGAAGAGTTCATAATGAGAAGAACTCATCTGATAGAGGCAGAAGAATTTAATAA
1 ACATTTCCAAATG-AGAGTTCATAATGAGAAGAACTCATCTGACAGAGG-AGAAGAAGTTCATAA
* *
815401 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAATGACACCTCGCTTGA
64 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCTTGA
815466 GGGATTG
129 GGGATTG
** * *
815473 GTATTTCCAAATGAAGAGTTCACAATGAGAAGAACTCAT-TCGATAGAGGGAGAAGAAGTTCATA
1 ACATTTCCAAATG-AGAGTTCATAATGAGAAGAACTCATCT-GACAGA-GGAGAAGAAGTTCATA
* * *
815537 ATAAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACATCGCTTG
63 ATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCTTG
815602 AGGGATTG
128 AGGGATTG
* *
815610 ACATTTACAAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAAGGAGAAGAAGTTCATAA
1 ACATTTCCAAA-TGAGAGTTCATAATGAGAAGAACTCATCTGACAG-AGGAGAAGAAGTTCATAA
* * *
815675 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCGAATCAGTGACGCCTCGTTTGA
64 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCTTGA
815740 GGGATTG
129 GGGATTG
*
815747 ACATTT-CTAATGGAGAGTTCATAATGAGAA
1 ACATTTCCAAAT-GAGAGTTCATAATGAGAA
815777 CTCGTCCTAA
Statistics
Matches: 403, Mismatches: 30, Indels: 16
0.90 0.07 0.04
Matches are distributed among these distances:
135 1 0.00
136 36 0.09
137 361 0.90
138 5 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (135 bp):
ACATTTCCAAATGAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGAGAAGAAGTTCATAATG
AGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCGCTTGAGG
GATTG
Found at i:815797 original size:32 final size:32
Alignment explanation
Indices: 815759--815840 Score: 155
Period size: 32 Copynumber: 2.6 Consensus size: 32
815749 ATTTCTAATG
815759 GAGAGTTCATAATGAGAACTCGTCCTAAAGGA
1 GAGAGTTCATAATGAGAACTCGTCCTAAAGGA
815791 GAGAGTTCATAATGAGAACTCGTCCTAAAGGA
1 GAGAGTTCATAATGAGAACTCGTCCTAAAGGA
*
815823 GAAAGTTCATAATGAGAA
1 GAGAGTTCATAATGAGAA
815841 GAACTTGTTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.22
Consensus pattern (32 bp):
GAGAGTTCATAATGAGAACTCGTCCTAAAGGA
Found at i:815993 original size:91 final size:90
Alignment explanation
Indices: 815886--816053 Score: 266
Period size: 91 Copynumber: 1.9 Consensus size: 90
815876 TGGATCAACA
* *
815886 TTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCC-TACGATGAAGAAGAAGTTCATAATGAG
1 TTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATCCATAAGA-G-AGAAGAAGTTCATAATGAG
815950 AAAAACTTGTTCAACCTTGCATCAGTG
64 AAAAACTTGTTCAACCTTGCATCAGTG
*
815977 TTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATCCATAAGAGAGAAGAAGTTTATAATGAGAA
1 TTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATCCATAAGAGAGAAGAAGTTCATAATGAGAA
* *
816042 GAGCTTGTTCAA
66 AAACTTGTTCAA
816054 TCCAACAACG
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 30 0.42
91 37 0.52
92 4 0.06
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (90 bp):
TTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATCCATAAGAGAGAAGAAGTTCATAATGAGAA
AAACTTGTTCAACCTTGCATCAGTG
Found at i:816270 original size:23 final size:23
Alignment explanation
Indices: 816228--816276 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
816218 TTAGTATTAT
* **
816228 TATTATTATTATTATTATTATCA
1 TATTATTATTAATAAAATTATCA
*
816251 TATTATTATTAATAAAATTATTA
1 TATTATTATTAATAAAATTATCA
816274 TAT
1 TAT
816277 ATTTGCAGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATTATTAATAAAATTATCA
Found at i:816274 original size:3 final size:3
Alignment explanation
Indices: 816202--816261 Score: 79
Period size: 3 Copynumber: 20.7 Consensus size: 3
816192 TCGAAAAAAA
* *
816202 TAT TAT TA- AAT TAT TAT TAG TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
816249 CA- TAT TAT TAT TA
1 TAT TAT TAT TAT TA
816262 ATAAAATTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:816531 original size:8 final size:8
Alignment explanation
Indices: 816520--816546 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
816510 GCCAGTCGAA
816520 CACCAAGC
1 CACCAAGC
816528 CACCAAGC
1 CACCAAGC
816536 CACCAAGC
1 CACCAAGC
816544 CAC
1 CAC
816547 TGAACATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.52, G:0.11, T:0.00
Consensus pattern (8 bp):
CACCAAGC
Found at i:817048 original size:2 final size:2
Alignment explanation
Indices: 817043--817072 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
817033 GAGTTTATAA
*
817043 CT CT CT CT CT CT CT CT CC CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
817073 TTGGGTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:820489 original size:26 final size:27
Alignment explanation
Indices: 820460--820510 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
820450 GGACTAAATG
*
820460 AAATAACCAAAATAC-CCTGAACTCCA
1 AAATAACCAAAATACACCTAAACTCCA
*
820486 AAATAACCAAATTACACCTAAACTC
1 AAATAACCAAAATACACCTAAACTC
820511 TAGAGTGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.51, C:0.29, G:0.02, T:0.18
Consensus pattern (27 bp):
AAATAACCAAAATACACCTAAACTCCA
Found at i:821629 original size:39 final size:39
Alignment explanation
Indices: 821586--821699 Score: 115
Period size: 39 Copynumber: 2.9 Consensus size: 39
821576 CAGGGTAAGT
* *
821586 CTTTACCGTATGTTCCTTTGCTTCGTCCATAGGGGAAAA
1 CTTTACTGTATGTTCCTTTGCTTCGTGCATAGGGGAAAA
* * * * *
821625 CTTTATTGTAT-TCTACTTTTCTTCGTGCATAGAGGAAGA
1 CTTTACTGTATGT-TCCTTTGCTTCGTGCATAGGGGAAAA
* *
821664 CTTTACTATCTGTTCCTTTG-TATCGTGCATAGGGGA
1 CTTTACTGTATGTTCCTTTGCT-TCGTGCATAGGGGA
821700 GCAATTTATC
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
38 2 0.03
39 56 0.95
40 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (39 bp):
CTTTACTGTATGTTCCTTTGCTTCGTGCATAGGGGAAAA
Found at i:824004 original size:185 final size:184
Alignment explanation
Indices: 823722--824093 Score: 620
Period size: 185 Copynumber: 2.0 Consensus size: 184
823712 ATTAAATTTT
* *
823722 AAATTTTAAATATATTATATATAACATATGGGTTCAGCCCAAACCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGTTAAGCCCAAACCATTTAAAACCCAATTAATAA
* *
823787 TTTAAGATCTAATAACGTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
66 TTTAAGATCCAATAACGTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
*
823852 TTATTTTATAATTATATATTATTTAAATTAATTGTAAACTGTTTTTTT-AATTAAA
131 TT-TTTTATAATTATATATTATTTAAATTAATTATAAACT-TTTTTTTGAATTAAA
* * *
823907 AAATATTAAATATATTATATATTACATATGGTTTAAGCCCAAACCATTTAAAACTCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGTTAAGCCCAAACCATTTAAAACCCAATTAATAA
* * *
823972 TTTAAGATCCAATAACTTTTAAACATAAATCAATATTAATTAATTAAAAAATTTATCTAAAATTT
66 TTTAAGATCCAATAACGTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
824037 TTTTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTTGAATTAAA
131 TTTTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTTGAATTAAA
824091 AAA
1 AAA
824094 CATTTAATTT
Statistics
Matches: 175, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
183 7 0.04
184 46 0.26
185 122 0.70
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (184 bp):
AAATATTAAATATATTATATATAACATATGGGTTAAGCCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACGTTTAAACATAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
TTTTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTTGAATTAAA
Found at i:827120 original size:39 final size:39
Alignment explanation
Indices: 827034--827185 Score: 151
Period size: 39 Copynumber: 3.9 Consensus size: 39
827024 CACACAAGGT
* *
827034 AAGTCTTTACTGTATGTTCCTTTGCTTTGTGCAAAGGGG
1 AAGTCTTTACTGTATGTTCCTTTGCTTAGTGCATAGGGG
** * * *
827073 AAAACTTTATTGTATTTTACTTTGCTTAGTGCATAGGGG
1 AAGTCTTTACTGTATGTTCCTTTGCTTAGTGCATAGGGG
* * * *
827112 TAGTCTTTACTGTCTGCTCCTTTGCTTCGTGCATAGGGG
1 AAGTCTTTACTGTATGTTCCTTTGCTTAGTGCATAGGGG
*** * * *
827151 AACAATTTACCGTATGCTCCTTTGCTTTGTGCATA
1 AAGTCTTTACTGTATGTTCCTTTGCTTAGTGCATA
827186 TGAAAAATCT
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (39 bp):
AAGTCTTTACTGTATGTTCCTTTGCTTAGTGCATAGGGG
Found at i:827174 original size:78 final size:78
Alignment explanation
Indices: 827035--827185 Score: 196
Period size: 78 Copynumber: 1.9 Consensus size: 78
827025 ACACAAGGTA
* * ** **
827035 AGTCTTTACTGTATGTTCCTTTGCTTTGTGCAAAGGGGAAAACTTTATTGTATTTTACTTTGCTT
1 AGTCTTTACTGTATGCTCCTTTGCTTCGTGCAAAGGGGAAAACTTTACCGTATGCTACTTTGCTT
827100 AGTGCATAGGGGT
66 AGTGCATAGGGGT
* * *
827113 AGTCTTTACTGTCTGCTCCTTTGCTTCGTGCATAGGGGAACAA-TTTACCGTATGCTCCTTTGCT
1 AGTCTTTACTGTATGCTCCTTTGCTTCGTGCAAAGGGGAA-AACTTTACCGTATGCTACTTTGCT
*
827177 TTGTGCATA
65 TAGTGCATA
827186 TGAAAAATCT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (78 bp):
AGTCTTTACTGTATGCTCCTTTGCTTCGTGCAAAGGGGAAAACTTTACCGTATGCTACTTTGCTT
AGTGCATAGGGGT
Found at i:829430 original size:20 final size:20
Alignment explanation
Indices: 829405--829447 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
829395 TCAAAATCAT
*
829405 TTTTCAAAATTTC-ATTTTGC
1 TTTTCAAAA-TCCAATTTTGC
829425 TTTTCAAAATCCAATTTTGC
1 TTTTCAAAATCCAATTTTGC
829445 TTT
1 TTT
829448 CAAGAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTCAAAATCCAATTTTGC
Found at i:829868 original size:6 final size:6
Alignment explanation
Indices: 829853--829890 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
829843 CTTGGCCATC
*
829853 TCTTCT TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TC
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TC
829891 CACCTCTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.13, C:0.34, G:0.00, T:0.53
Consensus pattern (6 bp):
TCTTCA
Found at i:829898 original size:18 final size:18
Alignment explanation
Indices: 829859--829900 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
829849 CATCTCTTCT
**
829859 TCTTCATCTTCATCTTCA
1 TCTTCATCTTCATCCACA
*
829877 TCTTCATCTTCATCCACC
1 TCTTCATCTTCATCCACA
829895 TCTTCA
1 TCTTCA
829901 CTTGAGTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45
Consensus pattern (18 bp):
TCTTCATCTTCATCCACA
Found at i:837804 original size:20 final size:20
Alignment explanation
Indices: 837779--837819 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
837769 CTTTCTATTG
837779 ATTCGAGGATGAATCCTTTT
1 ATTCGAGGATGAATCCTTTT
837799 ATTCGAGGATGAATCCTTTT
1 ATTCGAGGATGAATCCTTTT
837819 A
1 A
837820 GGAGTGGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (20 bp):
ATTCGAGGATGAATCCTTTT
Found at i:841453 original size:29 final size:31
Alignment explanation
Indices: 841418--841476 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
841408 ATATCCTTCC
841418 ACTTTTAT-CCC-GACATTAATGGTCCTCCT
1 ACTTTTATCCCCTGACATTAATGGTCCTCCT
841447 ACTTTTATCCCCTGACATTAATGGTCCTCC
1 ACTTTTATCCCCTGACATTAATGGTCCTCC
841477 ATCTCCACGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 8 0.29
30 3 0.11
31 17 0.61
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.37
Consensus pattern (31 bp):
ACTTTTATCCCCTGACATTAATGGTCCTCCT
Found at i:850711 original size:15 final size:14
Alignment explanation
Indices: 850676--850713 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
850666 ATATATTACT
850676 TTTATAAATAAATA
1 TTTATAAATAAATA
850690 TTTATAAAGT-AATA
1 TTTATAAA-TAAATA
850704 TATTATAAAT
1 T-TTATAAAT
850714 TTTATACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
TTTATAAATAAATA
Found at i:850729 original size:23 final size:25
Alignment explanation
Indices: 850683--850729 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
850673 ACTTTTATAA
*
850683 ATAAATATTTATAAAGTAATATATT
1 ATAAATATTTATAAAGTAAAATATT
*
850708 ATAAAT-TTTATACA-TAAAATAT
1 ATAAATATTTATAAAGTAAAATAT
850730 ATTTATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 7 0.35
25 6 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
ATAAATATTTATAAAGTAAAATATT
Found at i:851504 original size:17 final size:18
Alignment explanation
Indices: 851475--851514 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
851465 ATAAATAATA
851475 TATAAATATATTTTATAT
1 TATAAATATATTTTATAT
851493 TATAAATA-ATTTTATAT
1 TATAAATATATTTTATAT
851510 T-TAAA
1 TATAAA
851515 AATAAAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 4 0.18
17 10 0.45
18 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATAAATATATTTTATAT
Found at i:851517 original size:18 final size:17
Alignment explanation
Indices: 851478--851519 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
851468 AATAATATAT
*
851478 AAATATATTTTATATTAT
1 AAATA-ATTTTATATTAA
851496 AAATAATTTTATATTTAA
1 AAATAATTTTATA-TTAA
851514 AAATAA
1 AAATAA
851520 AGTATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AAATAATTTTATATTAA
Found at i:851971 original size:24 final size:25
Alignment explanation
Indices: 851907--851976 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
851897 ATCATATAAT
*
851907 TTATTTTAAATATAATATAATTATA
1 TTATTTAAAATATAATATAATTATA
* * *
851932 TCACATAAAAATATAATATAA-TATA
1 TTA-TTTAAAATATAATATAATTATA
851957 TTATTTAAAATATAATATAA
1 TTATTTAAAATATAATATAA
851977 ATAAATATAA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 15 0.41
25 8 0.22
26 14 0.38
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (25 bp):
TTATTTAAAATATAATATAATTATA
Found at i:851987 original size:10 final size:11
Alignment explanation
Indices: 851913--851989 Score: 66
Period size: 12 Copynumber: 6.5 Consensus size: 11
851903 TAATTTATTT
851913 TAAATATAATA
1 TAAATATAATA
851924 TAATTATATCACATA
1 TAA--ATAT-A-ATA
*
851939 AAAATATAATA
1 TAAATATAATA
* *
851950 TAATATATTATT
1 TAA-ATATAATA
851962 TAAAATATAATA
1 T-AAATATAATA
851974 TAAATA-AATA
1 TAAATATAATA
851984 TAAATA
1 TAAATA
851990 CTTAAACATT
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
10 10 0.19
11 13 0.24
12 15 0.28
13 10 0.19
14 1 0.02
15 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAATATAATA
Found at i:853690 original size:19 final size:18
Alignment explanation
Indices: 853662--853703 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
853652 AAAATAAAAC
853662 AAAAAGAAAGTAAA-AGCAA
1 AAAAAGAAAG-AAATAG-AA
*
853681 AAAAATAAAGAAATAGAA
1 AAAAAGAAAGAAATAGAA
853699 AAAAA
1 AAAAA
853704 CACAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (18 bp):
AAAAAGAAAGAAATAGAA
Found at i:859914 original size:32 final size:32
Alignment explanation
Indices: 859878--859938 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
859868 CAAGAAACGA
859878 TGAATGAT-GGGGCATCTTTGAAGATTCAATTT
1 TGAATG-TCGGGGCATCTTTGAAGATTCAATTT
**
859910 TGAATGTCGGGGCATCTTTGGGGATTCAA
1 TGAATGTCGGGGCATCTTTGAAGATTCAA
859939 CATCCTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (32 bp):
TGAATGTCGGGGCATCTTTGAAGATTCAATTT
Found at i:860147 original size:39 final size:39
Alignment explanation
Indices: 860104--860188 Score: 102
Period size: 38 Copynumber: 2.2 Consensus size: 39
860094 TATTCAAACC
* * *
860104 AGATTTTATATCGCTTGAGATGGTTTC-ACTCGAAATAGA
1 AGATTTTATATCGCTTGAGATAGTTTCGA-TCGAAACAAA
* *
860143 AGA-TTTATTTCGGTTGAGATAGTTTCGATCGAAACAAA
1 AGATTTTATATCGCTTGAGATAGTTTCGATCGAAACAAA
860181 AGATTTTA
1 AGATTTTA
860189 AGAAACTAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
38 31 0.79
39 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (39 bp):
AGATTTTATATCGCTTGAGATAGTTTCGATCGAAACAAA
Found at i:860300 original size:97 final size:98
Alignment explanation
Indices: 860188--860405 Score: 332
Period size: 97 Copynumber: 2.2 Consensus size: 98
860178 AAAAGATTTT
* * * *
860188 AAGAAACTAAGCCTGATTTTTAAGGGTTTCTTGATGAAGATTTTCAATGAGTTTTT-AAATGAAG
1 AAGAAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAAGAAA
*
860252 CTAAGCCTAATTTTT-AGGGATTCCTTGACAACC
66 CTAAGCCTAATTTTTAAGGG-TTCCTTAACAACC
*
860285 AAGAAACTAAGCCTGATTTTCAGGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAAGAAA
1 AAGAAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAAGAAA
*
860350 CTAAGCCTAATTTTTAAGGGTTCCTTAACAACT
66 CTAAGCCTAATTTTTAAGGGTTCCTTAACAACC
* *
860383 AAAAAACTAAGCTTGATTTTCAA
1 AAGAAACTAAGCCTGATTTTCAA
860406 CTTGATGAGT
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
97 53 0.49
98 52 0.48
99 4 0.04
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (98 bp):
AAGAAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAAGAAA
CTAAGCCTAATTTTTAAGGGTTCCTTAACAACC
Found at i:860401 original size:98 final size:97
Alignment explanation
Indices: 860191--860405 Score: 324
Period size: 98 Copynumber: 2.2 Consensus size: 97
860181 AGATTTTAAG
* * * *
860191 AAACTAAGCCTGATTTTTAAGGGTTTCTTGATGAAGATTTTCAATGAGTTTTTAAATGAAGCTAA
1 AAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAGAAACTAA
* *
860256 GCCTAATTTTTAGGGATTCCTTGACAACCAAG
66 GCCTAATTTTTAGGGATTCCTTAACAACCAAA
*
860288 AAACTAAGCCTGATTTTCAGGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAAGAAACTA
1 AAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTT-AAAAGAAACTA
*
860353 AGCCTAATTTTTAAGGG-TTCCTTAACAACTAAA
65 AGCCTAATTTTT-AGGGATTCCTTAACAACCAAA
*
860386 AAACTAAGCTTGATTTTCAA
1 AAACTAAGCCTGATTTTCAA
860406 CTTGATGAGT
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
97 50 0.47
98 52 0.49
99 4 0.04
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (97 bp):
AAACTAAGCCTGATTTTCAAGGGTTTATTGATGAAGATTTTCAATGAGTTTTTAAAAGAAACTAA
GCCTAATTTTTAGGGATTCCTTAACAACCAAA
Found at i:860467 original size:42 final size:41
Alignment explanation
Indices: 860400--860521 Score: 158
Period size: 42 Copynumber: 3.0 Consensus size: 41
860390 TAAGCTTGAT
*
860400 TTTCAA-CTTGATGAGTAAGTCCTTCGGGCCATC-AGTAAGTC
1 TTTCAAGCATGATG-GTAAGTCCTTCGGGCCATCTA-TAAGTC
*
860441 TTTCGAGCATGATGTGTAAGTCCTTCGGGCCATCTATAAGTC
1 TTTCAAGCATGATG-GTAAGTCCTTCGGGCCATCTATAAGTC
* * *
860483 TTTCAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAG
1 TTTCAAGCATGATGGTAAGTCCTTCGGGCCATCTATAAG
860522 ACCTTCAGGT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 28 0.39
42 43 0.60
43 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (41 bp):
TTTCAAGCATGATGGTAAGTCCTTCGGGCCATCTATAAGTC
Found at i:860482 original size:20 final size:20
Alignment explanation
Indices: 860415--860527 Score: 66
Period size: 20 Copynumber: 5.5 Consensus size: 20
860405 ACTTGATGAG
860415 TAAGTCCTTCGGGCCATC-A
1 TAAGTCCTTCGGGCCATCTA
* * * * *
860434 GTAAGTCTTTCGAGCATGATGTG
1 -TAAGTCCTTCGGGC--CATCTA
860457 TAAGTCCTTCGGGCCATCTA
1 TAAGTCCTTCGGGCCATCTA
* ** * **
860477 TAAGTCTTTCAAGCAAGATGA
1 TAAGTCCTTCGGGCCATCT-A
*
860498 TAAGTCCTTCGGGCCATCCA
1 TAAGTCCTTCGGGCCATCTA
*
860518 TAAGACCTTC
1 TAAGTCCTTC
860528 AGGTAGGATG
Statistics
Matches: 65, Mismatches: 24, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
20 38 0.58
21 13 0.20
22 14 0.22
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (20 bp):
TAAGTCCTTCGGGCCATCTA
Found at i:860891 original size:31 final size:31
Alignment explanation
Indices: 860856--860961 Score: 99
Period size: 31 Copynumber: 3.3 Consensus size: 31
860846 GATTGTTTCC
*
860856 CTTGAAAACAAATTTGTCTGTTAGACAGTTT
1 CTTGAAAACAAATTTGTCTCTTAGACAGTTT
*
860887 CTTG-AAACAAAGTTTGTCTCCTTA-AGAGTTTT
1 CTTGAAAACAAA-TTTGTCT-CTTAGACAG-TTT
* *
860919 CTTATAAAAAAAATTTGTCTCTTAAGACAGTTT
1 CTT-GAAAACAAATTTGTCTCTT-AGACAGTTT
860952 CCCTTGAAAA
1 --CTTGAAAA
860962 AGTTTTATCT
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
30 7 0.12
31 14 0.23
32 12 0.20
33 11 0.18
34 13 0.22
35 3 0.05
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (31 bp):
CTTGAAAACAAATTTGTCTCTTAGACAGTTT
Found at i:860962 original size:32 final size:33
Alignment explanation
Indices: 860791--860960 Score: 113
Period size: 33 Copynumber: 5.2 Consensus size: 33
860781 AATTGTTTGT
* * *
860791 CTTGAAACAATTTTGTCTCCCTTGAGACAGTTTCT
1 CTTGAAACAAATTTGTCT--CTTAAGACAGTTTCC
** * **
860826 CTTGAAACAAA--AATCT-TTGAGATTGTTTCC
1 CTTGAAACAAATTTGTCTCTTAAGACAGTTTCC
*
860856 CTTGAAAACAAATTTGTCTGTT-AGACAGTTT--
1 CTTG-AAACAAATTTGTCTCTTAAGACAGTTTCC
*
860887 CTTGAAACAAAGTTTGTCTCCTTAAG--AGTTTTC
1 CTTGAAACAAA-TTTGTCT-CTTAAGACAGTTTCC
* * *
860920 TTATAAAAAAAATTTGTCTCTTAAGACAGTTTCC
1 CT-TGAAACAAATTTGTCTCTTAAGACAGTTTCC
860954 CTTGAAA
1 CTTGAAA
860961 AAGTTTTATC
Statistics
Matches: 106, Mismatches: 17, Indels: 26
0.71 0.11 0.17
Matches are distributed among these distances:
30 22 0.21
31 23 0.22
32 8 0.08
33 27 0.25
34 16 0.15
35 10 0.09
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (33 bp):
CTTGAAACAAATTTGTCTCTTAAGACAGTTTCC
Found at i:860983 original size:32 final size:32
Alignment explanation
Indices: 860895--860983 Score: 83
Period size: 33 Copynumber: 2.7 Consensus size: 32
860885 TTCTTGAAAC
* *
860895 AAAGTTTGTCTCCTTAAGAGTTTTCTTATAAAA
1 AAAGTTTGTCTCCTTAAGAGTTTCCCTAT-AAA
* *
860928 AAAATTTGTCT-CTTAAGACAGTTTCCCT-TGAA
1 AAAGTTTGTCTCCTTAAG--AGTTTCCCTATAAA
*
860960 AAAGTTTTATCTCCTTAAGAGTTT
1 AAAG-TTTGTCTCCTTAAGAGTTT
860984 TGATCTTACT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
32 16 0.35
33 17 0.37
34 13 0.28
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (32 bp):
AAAGTTTGTCTCCTTAAGAGTTTCCCTATAAA
Found at i:861055 original size:20 final size:20
Alignment explanation
Indices: 861032--861092 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
861022 CTTGAAACAA
861032 AGTTTTGTCTCTCTTGAGAC
1 AGTTTTGTCTCTCTTGAGAC
* *
861052 AG--TT-TC-C-CTTGAAATA
1 AGTTTTGTCTCTCTTGAGA-C
*
861068 AGTTTTGTCTCTCTTGAGGC
1 AGTTTTGTCTCTCTTGAGAC
861088 AGTTT
1 AGTTT
861093 CCCTTGAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 12
0.64 0.11 0.26
Matches are distributed among these distances:
15 6 0.20
16 3 0.10
17 2 0.07
18 4 0.13
19 2 0.07
20 8 0.27
21 5 0.17
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (20 bp):
AGTTTTGTCTCTCTTGAGAC
Found at i:861073 original size:36 final size:37
Alignment explanation
Indices: 861017--861103 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 37
861007 CTTCTGACTA
*
861017 TTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
* *
861054 TTTCCCTTGAAA-TAAGTTTTGTCTCTCTTGAGGCAG
1 TTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
861090 TTTCCCTTGAAACA
1 TTTCCCTTGAAACA
861104 TAAACTTTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 34 0.76
37 11 0.24
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
Found at i:861297 original size:73 final size:71
Alignment explanation
Indices: 861146--861331 Score: 237
Period size: 73 Copynumber: 2.5 Consensus size: 71
861136 TTTGTCTCTA
* * * *
861146 TTGAGACAGTTTCCCTTGAAACAAAATGTATCTCACTTGAGATGGTTTTCTTAAAACCAACTTCA
1 TTGAGACAGTTTCCCTTGAAACGAAATTTATCTCACTCGAGATGGTTTTCTTAAAACCAAATTCA
861211 TCTCGC
66 TCTCGC
* * *
861217 TTAAGACAGTTTTCCTTTGAAACGAAATTTATCTAACTCGAGATGGTTTTTCTTAAAACCAAATT
1 TTGAGACAG-TTTCCCTTGAAACGAAATTTATCTCACTCGAGATGG-TTTTCTTAAAACCAAATT
*
861282 CGTCTCGC
64 CATCTCGC
*
861290 TTGAGACAACTTTCCCTTGAAACAAGAAATTTTATCTCACTC
1 TTGAGAC-AGTTTCCCTTGAAAC--GAAA-TTTATCTCACTC
861332 AAGAGAGCTT
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
71 8 0.08
72 31 0.32
73 42 0.43
74 1 0.01
75 4 0.04
76 11 0.11
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (71 bp):
TTGAGACAGTTTCCCTTGAAACGAAATTTATCTCACTCGAGATGGTTTTCTTAAAACCAAATTCA
TCTCGC
Found at i:861756 original size:91 final size:91
Alignment explanation
Indices: 861599--862153 Score: 767
Period size: 91 Copynumber: 6.0 Consensus size: 91
861589 GATTAACCGA
* * *
861599 TCAACATTTCCAGTGGAGAGTTCATAATAAGAAGAACTCATCCAATGAGGGAGAAGAAATTTATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
861664 ATGAGAAGAACTTGTTCAACCTT-GC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* *
861689 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAATAACTCATCCAATGAGGGAGAGGAAGTTCAT
1 -TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCAT
*
861754 AATGA-AAGAACTTGTTCAAACTTGGC
65 AATGAGAAGAACTTGTTCAACCTTGGC
* * *
861780 TCAGCATTTCCAGTGGAGATTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
*
861845 ATGAGAAAAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* * *
861871 TCAACATTTCCAGTGGAGTGTTCATAATGAGAAGAACTCATCTAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
*
861936 ATGAGAAGAACTTGTTCAATCTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGC
* * *
861962 TCAACAATTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACGAATCATCCAATGAGGGAA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAG-----A----AC---TCATCCAATGAGGGAG
*
862027 AAGAATTTCATAATGAGAAGAACTTGTTCAACCTT-GC
54 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGC
*
862064 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGACA-GAGGGAGAAGAAGTTC
1 -TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATC-CA-ATGAGGGAGAAGAAGTTC
862128 ATAATGAGAAGAACTTGTTCAACCTT
63 ATAATGAGAAGAACTTGTTCAACCTT
862154 AGCTGGATTC
Statistics
Matches: 415, Mismatches: 32, Indels: 33
0.86 0.07 0.07
Matches are distributed among these distances:
90 81 0.20
91 206 0.50
92 41 0.10
93 1 0.00
94 2 0.00
96 1 0.00
98 1 0.00
100 2 0.00
102 2 0.00
103 78 0.19
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (91 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTGGC
Found at i:861911 original size:181 final size:181
Alignment explanation
Indices: 861599--862149 Score: 782
Period size: 181 Copynumber: 3.0 Consensus size: 181
861589 GATTAACCGA
* * *
861599 TCAACATTTCCAGTGGAGAGTTCATAATAAGAAGAACTCATCCAATGAGGGAGAAGAAATTTATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATTCATA
*
861664 ATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCCAGTGGAGAGTTCATAATGAGAATAACTC
66 ATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTC
*
861729 ATCCAATGAGGGAGAGGAAGTTCATAATGA-AAGAACTTGTTCAAACTTGGC
131 ATCCAA-GAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACTTGGC
* * *
861780 TCAGCATTTCCAGTGGAGATTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATTCATA
* *
861845 ATGAGAAAAACTTGTTCAACCTTGGC-TCAACATTTCCAGTGGAGTGTTCATAATGAGAAGAACT
66 ATGAGAAGAACTTGTTCAACCTT-GCATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACT
* *
861909 CATCTAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTGGC
130 CATCCAA-GAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACTTGGC
* * *
861962 TCAACAATTCTAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACGAATCATCCAATGAGGGAA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCAT-C--C--A--A--C---GAGGGAG
*
862027 AAGAATTTCATAATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCCAGTGGAGAGTTCATAA
54 AAGAAATTCATAATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCCAGTGGAGAGTTCATAA
*
862092 TGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
119 TGAGAAGAACTCATC-CA-AGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
862150 CCTTAGCTGG
Statistics
Matches: 331, Mismatches: 22, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
181 145 0.44
182 59 0.18
183 1 0.00
185 1 0.00
187 1 0.00
189 1 0.00
191 1 0.00
193 2 0.01
194 80 0.24
195 39 0.12
196 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (181 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATTCATA
ATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTC
ATCCAAGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACTTGGC
Found at i:862038 original size:103 final size:103
Alignment explanation
Indices: 861908--862106 Score: 319
Period size: 103 Copynumber: 1.9 Consensus size: 103
861898 TGAGAAGAAC
* * *
861908 TCATCTAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTGGC-TCAACAATTC
1 TCATCCAACGAGGGAAAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT-GCATCAACAATTC
*
861972 TAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACGAA
65 CAGTGGAGAGTTCATAATGAGAAGAACTCATCCGACGAA
* * *
862011 TCATCCAATGAGGGAAAAGAATTTCATAATGAGAAGAACTTGTTCAACCTTGCATCAACATTTCC
1 TCATCCAACGAGGGAAAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGCATCAACAATTCC
862076 AGTGGAGAGTTCATAATGAGAAGAACTCATC
66 AGTGGAGAGTTCATAATGAGAAGAACTCATC
862107 TGACAGAGGG
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 2 0.02
103 86 0.98
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (103 bp):
TCATCCAACGAGGGAAAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGCATCAACAATTCC
AGTGGAGAGTTCATAATGAGAAGAACTCATCCGACGAA
Found at i:862452 original size:44 final size:44
Alignment explanation
Indices: 862404--862759 Score: 267
Period size: 44 Copynumber: 8.1 Consensus size: 44
862394 AAAAGAGTCG
* *
862404 GATCAGCATCAACTTTTTACTCGATTCTATCACAGAAGGAGGTA
1 GATCAGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
* * * * *
862448 GATCAGCACCGACATCTTGTTCGATTCCATCACAGAAGGAGGT-
1 GATCAGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
** * * * *
862491 GAATC-G-A-CATTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTG
1 G-ATCAGCATCA-ACTT-TTT-GCTCGATTCCATCACAGAAGGAGGTA
* *
862536 GA-CTAGCATCAACCTTTTGCTCGATTCTATCACAGAAGGAGGTA
1 GATC-AGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
* * * * * *
862580 GATCATCACCGAA-ATCTTGTTCGATTCCATCACAGAAGGAGGTG
1 GATCAGCATC-AACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
** *** * * *
862624 GATCAAAAT-TTTTATTTTGCTCAAATCCATCACAGAAGGAGTTA
1 GATCAGCATCAACT-TTTTGCTCGATTCCATCACAGAAGGAGGTA
* *
862668 GATCAACATCAACTTTTTGCTCGATTCTATCACAGAAGGAGGTA
1 GATCAGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
* * * * * *
862712 GATCAACACCAACATCTTGTTCGATTCCATCACAGAAGGAGGTG
1 GATCAGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
862756 GATC
1 GATC
862760 GACTTTTTTA
Statistics
Matches: 241, Mismatches: 57, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.00
42 2 0.01
43 5 0.02
44 220 0.91
45 9 0.04
46 2 0.01
47 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
GATCAGCATCAACTTTTTGCTCGATTCCATCACAGAAGGAGGTA
Found at i:862583 original size:132 final size:132
Alignment explanation
Indices: 862293--862778 Score: 715
Period size: 132 Copynumber: 3.7 Consensus size: 132
862283 AACTTTGTTT
* * * * *
862293 TCGATTCTATCACAGAAGGAGGTAGATCAACATCGATATCTTGTTTGATTCCATCACATAAAGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATCTTGTTCGATTCCATCACAGAAGGAG
* * * * * *
862358 GTGGATAGATATTTTT-TTTAACTCAAATCCATCACAAAAAGAGTCGGATCAGCATCAACTTTTT
66 GTGGATCGACATTTTTATTTAGCTCAAATCCATCACAGAAGGAGTTGGATCAGCATCAACTTTTT
*
862422 AC
131 GC
*
862424 TCGATTCTATCACAGAAGGAGGTAGATCAGCACCGACATCTTGTTCGATTCCATCACAGAAGGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATCTTGTTCGATTCCATCACAGAAGGAG
* * *
862489 GTGAATCGACATTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGA-CTAGCATCAACCTTT
66 GTGGATCGACATTTTTATTTAGCTCAAATCCATCACAGAAGGAGTTGGATC-AGCATCAACTTTT
862553 TGC
130 TGC
* *
862556 TCGATTCTATCACAGAAGGAGGTAGATCATCACCGAAATCTTGTTCGATTCCATCACAGAAGGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATCTTGTTCGATTCCATCACAGAAGGAG
* * * * *
862621 GTGGATCAAAATTTTTATTTTGCTCAAATCCATCACAGAAGGAGTTAGATCAACATCAACTTTTT
66 GTGGATCGACATTTTTATTTAGCTCAAATCCATCACAGAAGGAGTTGGATCAGCATCAACTTTTT
862686 GC
131 GC
*
862688 TCGATTCTATCACAGAAGGAGGTAGATCAACACCAACATCTTGTTCGATTCCATCACAGAAGGAG
1 TCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATCTTGTTCGATTCCATCACAGAAGGAG
* *
862753 GTGGATCGACTTTTTTATTTGGCTCA
66 GTGGATCGACATTTTTATTTAGCTCA
862779 TCTATTACAT
Statistics
Matches: 320, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
131 73 0.23
132 246 0.77
133 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (132 bp):
TCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATCTTGTTCGATTCCATCACAGAAGGAG
GTGGATCGACATTTTTATTTAGCTCAAATCCATCACAGAAGGAGTTGGATCAGCATCAACTTTTT
GC
Found at i:863298 original size:17 final size:17
Alignment explanation
Indices: 863267--863304 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
863257 ATTATGTTTC
863267 AAAATAAAAGCAAAAAG
1 AAAATAAAAGCAAAAAG
863284 AAAAGTAAAAG-AAAAAG
1 AAAA-TAAAAGCAAAAAG
863301 AAAA
1 AAAA
863305 AACACAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (17 bp):
AAAATAAAAGCAAAAAG
Found at i:866253 original size:6 final size:6
Alignment explanation
Indices: 866242--866281 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
866232 CCCCCTTTTA
866242 TTTTCT TTTTCT TTTTCT TTTT-T CTTTTCTT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT -TTTTC-T TTTTCT TTT
866282 ATTCTCTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 1 0.03
6 24 0.77
7 5 0.16
8 1 0.03
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:866266 original size:19 final size:20
Alignment explanation
Indices: 866242--866286 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
866232 CCCCCTTTTA
866242 TTTTCTTTTTC-TTTTTCTT
1 TTTTCTTTTTCTTTTTTCTT
866261 TTTTC-TTTTCTTTTTTCTT
1 TTTTCTTTTTCTTTTTTCTT
866280 TTATTCT
1 TT-TTCT
866287 CTTCAGGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.22
19 15 0.65
20 3 0.13
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTCTTTTTCTTTTTTCTT
Found at i:878090 original size:2 final size:2
Alignment explanation
Indices: 878083--878166 Score: 125
Period size: 2 Copynumber: 42.0 Consensus size: 2
878073 AAATTTACTA
* * *
878083 AT AT AT AT AT AT AT AT AT -T AA ACT AA AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
878125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
878167 TAAACTAAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
1 1 0.01
2 73 0.97
3 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:878185 original size:17 final size:17
Alignment explanation
Indices: 878163--878199 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
878153 ATATATATAT
878163 ATATTAAACTAAACCTA
1 ATATTAAACTAAACCTA
878180 ATATTAAACTAAACCTA
1 ATATTAAACTAAACCTA
878197 ATA
1 ATA
878200 GCCGTTCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (17 bp):
ATATTAAACTAAACCTA
Done.