Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008183.1 Hibiscus syriacus cultivar Beakdansim tig00110783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2364390
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 11
Found at i:652200 original size:65 final size:65
Alignment explanation
Indices: 652097--652253 Score: 208
Period size: 65 Copynumber: 2.4 Consensus size: 65
652087 ATGCTAAGAT
* * *
652097 TCGATGCAATTTCCATGTTCATGGCCTCAAGCTGAGATACCAGAACAGACTACAAATGCGACCAC
1 TCGATGCAATTTCCATGTTCATGGCCTCAAGCTAAGATACAAGAACAGACAACAAATGCGACCAC
* * * * * *
652162 TCGATGCAACTTCCATGTTCATGGCTTCAA-CATAAGATACAATAACAGACAACAGATGCTACGA
1 TCGATGCAATTTCCATGTTCATGGCCTCAAGC-TAAGATACAAGAACAGACAACAAATGCGACCA
*
652226 T
65 C
652227 TCGATGCAATTTCCATGTTCATGGCCT
1 TCGATGCAATTTCCATGTTCATGGCCT
652254 TGACTTGATG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 1 0.01
65 78 0.99
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (65 bp):
TCGATGCAATTTCCATGTTCATGGCCTCAAGCTAAGATACAAGAACAGACAACAAATGCGACCAC
Found at i:653610 original size:19 final size:19
Alignment explanation
Indices: 653575--653613 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
653565 TATTAAAAAG
*
653575 TTATAAAATAATCTTTTAT
1 TTATAAAATAATATTTTAT
653594 TTAT-AAATAATTATTTTAT
1 TTATAAAATAA-TATTTTAT
653613 T
1 T
653614 AAATTTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATAAAATAATATTTTAT
Found at i:656089 original size:24 final size:24
Alignment explanation
Indices: 656061--656155 Score: 100
Period size: 24 Copynumber: 4.0 Consensus size: 24
656051 AAACGGAGAT
*
656061 ATCAGAAATCAAAACAGAATTCAG
1 ATCAGAAATCATAACAGAATTCAG
* * *
656085 ATCAGATATCATAACAGAATCCCG
1 ATCAGAAATCATAACAGAATTCAG
* * *
656109 ATCAGAAATCAGAACATAATTCTG
1 ATCAGAAATCATAACAGAATTCAG
* * *
656133 ATAAAAAATCATAACATAATTCA
1 ATCAGAAATCATAACAGAATTCA
656156 AATAAAAAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.51, C:0.18, G:0.09, T:0.22
Consensus pattern (24 bp):
ATCAGAAATCATAACAGAATTCAG
Found at i:656160 original size:24 final size:24
Alignment explanation
Indices: 656114--656169 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
656104 TCCCGATCAG
**
656114 AAATCAGAACATAATTCTGATAAA
1 AAATCAGAACATAATTCAAATAAA
*
656138 AAATCATAACATAATTCAAATAAA
1 AAATCAGAACATAATTCAAATAAA
656162 AAATCAGA
1 AAATCAGA
656170 TAAAACATTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.23
Consensus pattern (24 bp):
AAATCAGAACATAATTCAAATAAA
Found at i:656544 original size:27 final size:27
Alignment explanation
Indices: 656506--656558 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
656496 TTATCCATAG
*
656506 ATCATCTTCGGAATCATCACTGAATAT
1 ATCATATTCGGAATCATCACTGAATAT
656533 ATCATATTCGGAATCATCACTGAATA
1 ATCATATTCGGAATCATCACTGAATA
656559 AATCTTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (27 bp):
ATCATATTCGGAATCATCACTGAATAT
Found at i:665807 original size:24 final size:24
Alignment explanation
Indices: 665775--665823 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
665765 TTTCTATTAT
665775 CAGAAAAAGAAATGGAAAAAAAGG
1 CAGAAAAAGAAATGGAAAAAAAGG
665799 CAGAAAAAGAAATGGAAAAAAAGG
1 CAGAAAAAGAAATGGAAAAAAAGG
665823 C
1 C
665824 CTGCTTGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.65, C:0.06, G:0.24, T:0.04
Consensus pattern (24 bp):
CAGAAAAAGAAATGGAAAAAAAGG
Found at i:665973 original size:14 final size:15
Alignment explanation
Indices: 665950--665979 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
665940 TAGAAAAGGA
665950 AAAGACAAAAAAATG
1 AAAGACAAAAAAATG
665965 AAAGA-AAAAAAATG
1 AAAGACAAAAAAATG
665979 A
1 A
665980 TCTGCTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07
Consensus pattern (15 bp):
AAAGACAAAAAAATG
Found at i:668843 original size:20 final size:20
Alignment explanation
Indices: 668793--668856 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
668783 TATATATATC
*
668793 TAATAGCACTATAGATAAAA
1 TAATAGCACTATAAATAAAA
**
668813 TAATAAGCACTATAAATATTA
1 TAAT-AGCACTATAAATAAAA
*
668834 TAATAGCACTATGAATAAAA
1 TAATAGCACTATAAATAAAA
668854 TAA
1 TAA
668857 AATGAAGTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 20 0.54
21 17 0.46
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (20 bp):
TAATAGCACTATAAATAAAA
Found at i:669629 original size:29 final size:29
Alignment explanation
Indices: 669378--669626 Score: 268
Period size: 29 Copynumber: 8.4 Consensus size: 29
669368 GTTATGGTGT
* * ** *
669378 TATTTTCGTAATTATTTTTAAAAGTGTGT
1 TATTTTGGTAATTATTGTTAAAACAGTGA
* * * *
669407 TATTTTCGTATTTATTTTTAAAA-AGGGTGT
1 TATTTTGGTAATTATTGTTAAAACA--GTGA
* *
669437 TATTTTCGTAATTAATT-TTAAAACGGTGA
1 TATTTTGGTAATT-ATTGTTAAAACAGTGA
* *
669466 TATTCTGGCAATTATTGTTAAAACAGTGA
1 TATTTTGGTAATTATTGTTAAAACAGTGA
* *
669495 TATTTTGGTAATTATTGTTAAAACTGTGC
1 TATTTTGGTAATTATTGTTAAAACAGTGA
* *
669524 TATTTTGGTAATTATTGTTAAAACGGTGC
1 TATTTTGGTAATTATTGTTAAAACAGTGA
*
669553 TATTTTGGTAATTATTGTTAAAACGGTGA
1 TATTTTGGTAATTATTGTTAAAACAGTGA
669582 TATTTTGGTAATTATTGTTAAAAAAACAGTGA
1 TATTTTGGTAATTATTGTT---AAAACAGTGA
669614 TATTTTGGTAATT
1 TATTTTGGTAATT
669627 GTTTAAAAAA
Statistics
Matches: 196, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
28 3 0.02
29 146 0.74
30 22 0.11
31 3 0.02
32 22 0.11
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.47
Consensus pattern (29 bp):
TATTTTGGTAATTATTGTTAAAACAGTGA
Found at i:676146 original size:21 final size:21
Alignment explanation
Indices: 676118--676223 Score: 137
Period size: 21 Copynumber: 5.1 Consensus size: 21
676108 TATATATATC
*
676118 TAAT-AGCACTATAGATAAAA
1 TAATAAGCACTATAAATAAAA
676138 TAATAAGCACTATAAATAAAA
1 TAATAAGCACTATAAATAAAA
676159 TAATAAGCACTATAAATAAAA
1 TAATAAGCACTATAAATAAAA
* * **
676180 TAATAAACACAATAAATATTA
1 TAATAAGCACTATAAATAAAA
676201 TAAT-AGCACTA-AGAATAAAA
1 TAATAAGCACTATA-AATAAAA
676221 TAA
1 TAA
676224 AATGAAGTGG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
19 1 0.01
20 17 0.23
21 57 0.76
ACGTcount: A:0.60, C:0.09, G:0.06, T:0.25
Consensus pattern (21 bp):
TAATAAGCACTATAAATAAAA
Found at i:676770 original size:29 final size:29
Alignment explanation
Indices: 676742--677021 Score: 253
Period size: 29 Copynumber: 9.6 Consensus size: 29
676732 GTTATGGTGT
* * *
676742 TATTTTCGTAATTATTTTTAAAAGTGTGT
1 TATTTTGGTAATTATTTTTAAAAGAGTGA
* * * *
676771 TATTTTCGTATTTATTTTTAAAAAGGGTGT
1 TATTTTGGTAATTATTTTT-AAAAGAGTGA
* *
676801 TATTTTCGTAATTAATTTTAAAACG-GTGA
1 TATTTTGGTAATTATTTTTAAAA-GAGTGA
* *
676830 TATTTTGGCAATTATTATTAAAACG-GTGA
1 TATTTTGGTAATTATTTTTAAAA-GAGTGA
* * *
676859 TATTTTGGTAATTATTGTTAAAACAGTGT
1 TATTTTGGTAATTATTTTTAAAAGAGTGA
* * * *
676888 TATTTTGGTAATTATTGTTAAAACAATGC
1 TATTTTGGTAATTATTTTTAAAAGAGTGA
* * *
676917 TATTTTGGTAATTATTGTTAAAACG-TTGC
1 TATTTTGGTAATTATTTTTAAAA-GAGTGA
* *
676946 TATTTTGGTAATTATTGTT-AAAGCGGTGA
1 TATTTTGGTAATTATTTTTAAAAG-AGTGA
* *
676975 TATTTTGGTAATTATTGTTAAAAACAGTGA
1 TATTTTGGTAATTATT-TTTAAAAGAGTGA
677005 TATTTTGGTAATTATTT
1 TATTTTGGTAATTATTT
677022 AAAAAAAAAT
Statistics
Matches: 220, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.00
28 3 0.01
29 165 0.75
30 48 0.22
31 3 0.01
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (29 bp):
TATTTTGGTAATTATTTTTAAAAGAGTGA
Found at i:676882 original size:58 final size:58
Alignment explanation
Indices: 676737--677020 Score: 329
Period size: 58 Copynumber: 4.9 Consensus size: 58
676727 TTTCGGTTAT
* * * * * * * *
676737 GGTGTTATTTTCGTAATTATTTTTAAAA-GTGTGTTATTTTCGTATTTATTTTTAAAAAG
1 GGTGATATTTTGGTAATTATTGTTAAAACG-GTGATATTTTGGTAATTATTGTT-AAAAC
* * * *
676796 GGTGTTATTTTCGTAATTAATT-TTAAAACGGTGATATTTTGGCAATTATTATTAAAAC
1 GGTGATATTTTGGTAATT-ATTGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAAC
* *
676854 GGTGATATTTTGGTAATTATTGTTAAAACAGTGTTATTTTGGTAATTATTGTTAAAAC
1 GGTGATATTTTGGTAATTATTGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAAC
** * * * *
676912 AATGCTATTTTGGTAATTATTGTTAAAACGTTGCTATTTTGGTAATTATTGTTAAAGC
1 GGTGATATTTTGGTAATTATTGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAAC
*
676970 GGTGATATTTTGGTAATTATTGTTAAAAACAGTGATATTTTGGTAATTATT
1 GGTGATATTTTGGTAATTATTGTT-AAAACGGTGATATTTTGGTAATTATT
677021 TAAAAAAAAA
Statistics
Matches: 196, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
57 3 0.02
58 124 0.63
59 65 0.33
60 4 0.02
ACGTcount: A:0.30, C:0.05, G:0.17, T:0.48
Consensus pattern (58 bp):
GGTGATATTTTGGTAATTATTGTTAAAACGGTGATATTTTGGTAATTATTGTTAAAAC
Found at i:676923 original size:87 final size:87
Alignment explanation
Indices: 676742--677020 Score: 339
Period size: 87 Copynumber: 3.2 Consensus size: 87
676732 GTTATGGTGT
* * * * * *
676742 TATTTTCGTAATTATTTTTAAAA-GTGTGTTATTTTCGTATTTATTTTTAAAA-AGGGTGTTATT
1 TATTTTGGTAATTATTATTAAAACG-GTGATATTTTGGTAATTATTGTTAAAACA--GTGTTATT
* *
676805 TTCGTAATTAATT-TTAAAACGGTGA
63 TTGGTAATT-ATTGTTAAAACAGTGA
*
676830 TATTTTGGCAATTATTATTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGTTATTTTG
1 TATTTTGGTAATTATTATTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGTTATTTTG
* *
676895 GTAATTATTGTTAAAACAATGC
66 GTAATTATTGTTAAAACAGTGA
* * * * * *
676917 TATTTTGGTAATTATTGTTAAAACGTTGCTATTTTGGTAATTATTGTTAAAGCGGTGATATTTTG
1 TATTTTGGTAATTATTATTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGTTATTTTG
676982 GTAATTATTGTTAAAAACAGTGA
66 GTAATTATTGTT-AAAACAGTGA
677005 TATTTTGGTAATTATT
1 TATTTTGGTAATTATT
677021 TAAAAAAAAA
Statistics
Matches: 167, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
86 3 0.02
87 95 0.57
88 67 0.40
89 2 0.01
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (87 bp):
TATTTTGGTAATTATTATTAAAACGGTGATATTTTGGTAATTATTGTTAAAACAGTGTTATTTTG
GTAATTATTGTTAAAACAGTGA
Found at i:707134 original size:11 final size:11
Alignment explanation
Indices: 707118--707144 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
707108 TCAACGAGGA
707118 AGGAAGAGTGG
1 AGGAAGAGTGG
707129 AGGAAGAGTGG
1 AGGAAGAGTGG
707140 AGGAA
1 AGGAA
707145 AAGGAAGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.52, T:0.07
Consensus pattern (11 bp):
AGGAAGAGTGG
Found at i:714058 original size:20 final size:21
Alignment explanation
Indices: 714020--714059 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
714010 TCTTATTGAT
* *
714020 AAAATTAAAAGATCGATAATC
1 AAAATTAAAAGAACAATAATC
714041 AAAA-TAAAAGAACAATAAT
1 AAAATTAAAAGAACAATAAT
714060 TAAATAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (21 bp):
AAAATTAAAAGAACAATAATC
Found at i:718662 original size:37 final size:37
Alignment explanation
Indices: 718612--718702 Score: 182
Period size: 37 Copynumber: 2.5 Consensus size: 37
718602 GCCACAGACT
718612 AGAAGAAGTATTTTACTCATAAGAATATTGTAGTAGG
1 AGAAGAAGTATTTTACTCATAAGAATATTGTAGTAGG
718649 AGAAGAAGTATTTTACTCATAAGAATATTGTAGTAGG
1 AGAAGAAGTATTTTACTCATAAGAATATTGTAGTAGG
718686 AGAAGAAGTATTTTACT
1 AGAAGAAGTATTTTACT
718703 AAAAGAGTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (37 bp):
AGAAGAAGTATTTTACTCATAAGAATATTGTAGTAGG
Found at i:727824 original size:28 final size:28
Alignment explanation
Indices: 727779--727836 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
727769 TGGGTCAAGG
*
727779 CAGTTCATTCCAGTCACAT-GAGACTTGT
1 CAGTTCATTCCAGCCACATAG-GACTTGT
*
727807 CAGTTCATTTCAGCCACATAGGACTTGT
1 CAGTTCATTCCAGCCACATAGGACTTGT
727835 CA
1 CA
727837 TGTTAGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CAGTTCATTCCAGCCACATAGGACTTGT
Found at i:747636 original size:38 final size:37
Alignment explanation
Indices: 747585--747694 Score: 168
Period size: 36 Copynumber: 3.0 Consensus size: 37
747575 ACTACTGAGG
*
747585 CAGTTGTTAATAAGACGTATACTTCCTTTTCTTTTTCT
1 CAGTTGTTAATAAGATGTATACTTCCTTTTCTTTTT-T
* *
747623 CAGTTGTTAATAAGATGTATAC-TCTTTTTCCTTTTT
1 CAGTTGTTAATAAGATGTATACTTCCTTTTCTTTTTT
*
747659 CAGTTGTTAATAAGATGTATACTTTCTTTTCTTTTT
1 CAGTTGTTAATAAGATGTATACTTCCTTTTCTTTTT
747695 GTTTTTATAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
36 23 0.35
37 21 0.32
38 21 0.32
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.53
Consensus pattern (37 bp):
CAGTTGTTAATAAGATGTATACTTCCTTTTCTTTTTT
Found at i:747989 original size:21 final size:21
Alignment explanation
Indices: 747963--748012 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
747953 GTTCTCCATA
747963 TTCTGCCCAGCTTCCTTCGTC
1 TTCTGCCCAGCTTCCTTCGTC
*
747984 TTCTGCCCAGCTTCCTTTGTC
1 TTCTGCCCAGCTTCCTTCGTC
748005 TTCTGCCC
1 TTCTGCCC
748013 CGCATACCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.04, C:0.42, G:0.14, T:0.40
Consensus pattern (21 bp):
TTCTGCCCAGCTTCCTTCGTC
Found at i:749500 original size:23 final size:23
Alignment explanation
Indices: 749474--749528 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
749464 ATGCGAAGGC
*
749474 ATCCGATGGCAGCCGAGCGAGCT
1 ATCCGAGGGCAGCCGAGCGAGCT
749497 ATCCGAGGGCAGCCGAGCGAGCT
1 ATCCGAGGGCAGCCGAGCGAGCT
*
749520 ATGCGAGGG
1 ATCCGAGGG
749529 AATTCGAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.40, T:0.11
Consensus pattern (23 bp):
ATCCGAGGGCAGCCGAGCGAGCT
Found at i:749587 original size:29 final size:29
Alignment explanation
Indices: 749554--749609 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
749544 GAGCGAGGGT
* *
749554 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGGGCATGACGACCTACA
749583 AGGTCGCCCGGAGGGCATGACGACCTA
1 AGGTCGCCCGGAGGGCATGACGACCTA
749610 TGTGTTGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.30, G:0.36, T:0.12
Consensus pattern (29 bp):
AGGTCGCCCGGAGGGCATGACGACCTACA
Found at i:750541 original size:20 final size:19
Alignment explanation
Indices: 750518--750564 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
750508 CGATATACCA
750518 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
750538 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
750558 GGTAAAA
1 GGTAAAA
750565 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:750720 original size:180 final size:186
Alignment explanation
Indices: 750308--750777 Score: 675
Period size: 180 Copynumber: 2.5 Consensus size: 186
750298 TAAAAATGTG
* * **
750308 TCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATAAAACCGGTA
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGGTA
* * * *
750373 AAGCGCTACCGGATACATTTAAAGTGTC-AGTACTTTAATATAAGGATCGACACTTCGTGAATTT
66 AAACGATACCGGATATATTGAAAGTGTCGA-TACTTTAATATAAGGATCGACACTTCGTGAATTT
* **
750437 AAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTGAAGTGTCGATACTTTTAAAAAATGTA
130 AAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGT-AA--GTCGATACTTTTAAAAAAAATA
* *
750497 TCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATAAAACCGGTA
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGGTA
* *
750562 AAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTTGTGAATTTA
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
**
750626 AAAGAGAAGCAGTTTTAGCGCCTAT-AA-TGT-A-TCGATAC-TTTAAAAAAAATA
131 AAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTAAGTCGATACTTTTAAAAAAAATA
* *
750677 TCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGATA
1 TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGGTA
*
750742 AAATGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACGATACCGGATATATTGAAAGTGTCGATACTTT
750778 CGTAAGTACG
Statistics
Matches: 258, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
180 106 0.41
181 7 0.03
184 1 0.00
186 3 0.01
187 2 0.01
188 49 0.19
189 89 0.34
190 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (186 bp):
TCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATAAAACCGGTA
AAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCGTGAATTTA
AAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTAAGTCGATACTTTTAAAAAAAATA
Found at i:750721 original size:20 final size:19
Alignment explanation
Indices: 750698--750744 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
750688 CGATATAACA
750698 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
750718 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
*
750738 GATAAAA
1 GGTAAAA
750745 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.11, G:0.15, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:750746 original size:17 final size:20
Alignment explanation
Indices: 750707--750749 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
750697 AGGTAAAAAT
750707 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGGTATCAAA
750727 ATGATAAAACC-G-AT-AAA
1 ATGATAAAACCGGTATCAAA
750744 ATGATA
1 ATGATA
750750 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 2 0.09
19 1 0.04
20 11 0.48
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (20 bp):
ATGATAAAACCGGTATCAAA
Found at i:752984 original size:21 final size:21
Alignment explanation
Indices: 752958--753022 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
752948 AAGATAATCA
*
752958 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
*
752979 AGAGTCGAAGAGAAATTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
753000 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
753021 AG
1 AG
753023 GCACAAGGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.42, C:0.09, G:0.31, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:753098 original size:33 final size:33
Alignment explanation
Indices: 753056--753121 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
753046 AAATAGATGG
*
753056 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
753089 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
753122 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:754937 original size:19 final size:19
Alignment explanation
Indices: 754913--754961 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
754903 AATGTAGGGT
754913 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
754932 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
754951 TAATTTTGTAT
1 TAATTTTGTAT
754962 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:756235 original size:31 final size:31
Alignment explanation
Indices: 756197--756381 Score: 327
Period size: 31 Copynumber: 6.0 Consensus size: 31
756187 CCCGAAGGAC
* *
756197 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
756228 CAGTCCATATGTCCCGAAGAGCATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
756259 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
756290 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
756321 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
756352 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
756382 CCCTCGACCC
Statistics
Matches: 149, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 148 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:757546 original size:13 final size:15
Alignment explanation
Indices: 757515--757550 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
757505 TTCACACGTG
757515 GAGAAGAGAAAATGA
1 GAGAAGAGAAAATGA
757530 -AGAAG-GAAAA-GA
1 GAGAAGAGAAAATGA
757542 GAGAAGAGA
1 GAGAAGAGA
757551 TTTTTCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.11
13 10 0.53
14 7 0.37
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (15 bp):
GAGAAGAGAAAATGA
Found at i:760706 original size:31 final size:31
Alignment explanation
Indices: 760668--760851 Score: 327
Period size: 31 Copynumber: 6.0 Consensus size: 31
760658 CCCGAAGGAC
* *
760668 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
760699 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
760730 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
760761 CAGTCCATATGTCCC-AAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
760791 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
760822 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
760852 CCCTCGACCC
Statistics
Matches: 149, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
30 30 0.20
31 118 0.79
32 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:760807 original size:61 final size:62
Alignment explanation
Indices: 760668--760851 Score: 327
Period size: 61 Copynumber: 3.0 Consensus size: 62
760658 CCCGAAGGAC
* *
760668 CAGTCCATA-GATTCCGAAGAACCTAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
760730 CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCC-AAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
760791 CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
760852 CCCTCGACCC
Statistics
Matches: 118, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
61 61 0.52
62 56 0.47
63 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.20
Consensus pattern (62 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:760841 original size:92 final size:92
Alignment explanation
Indices: 760684--760851 Score: 327
Period size: 92 Copynumber: 1.8 Consensus size: 92
760674 ATAGATTCCG
*
760684 AAGAACCTAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAG
1 AAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAG
760749 AACATAGGTAAACAGTCCATATGTCCC
66 AACATAGGTAAACAGTCCATATGTCCC
760776 AAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAG
1 AAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAG
760841 AACATAGGTAA
66 AACATAGGTAA
760852 CCCTCGACCC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (92 bp):
AAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAG
AACATAGGTAAACAGTCCATATGTCCC
Found at i:762541 original size:31 final size:31
Alignment explanation
Indices: 762503--762687 Score: 327
Period size: 31 Copynumber: 6.0 Consensus size: 31
762493 CCCGAAGGAC
* *
762503 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
762534 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
762565 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
762596 CAGTCCATATGTCCCAAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
762627 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
762658 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
762688 CCCTCGACCC
Statistics
Matches: 149, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 148 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:764379 original size:31 final size:31
Alignment explanation
Indices: 764341--764525 Score: 336
Period size: 31 Copynumber: 6.0 Consensus size: 31
764331 CCCGAAGGAC
* *
764341 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
764372 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
764403 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
764434 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
764465 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
764496 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
764526 CCCTCGACCC
Statistics
Matches: 151, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
31 150 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:766217 original size:31 final size:31
Alignment explanation
Indices: 766179--766332 Score: 274
Period size: 31 Copynumber: 5.0 Consensus size: 31
766169 CCCGAAGGAC
* *
766179 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
766210 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
766241 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
766272 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
766303 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
766333 CCCTCGACCC
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 119 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:768022 original size:31 final size:31
Alignment explanation
Indices: 767984--768168 Score: 327
Period size: 31 Copynumber: 6.0 Consensus size: 31
767974 CCCGAAGGAC
* *
767984 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
768015 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
768046 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
768077 CAGTCCATATGTCCCAAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
768108 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
768139 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
768169 CCCTCGACCC
Statistics
Matches: 149, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 148 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:769995 original size:201 final size:200
Alignment explanation
Indices: 769557--770090 Score: 962
Period size: 201 Copynumber: 2.7 Consensus size: 200
769547 GGATGTTACA
* * *
769557 CGATCCATATATAAAAAGTGTCGATCCCATAAACATTGAAACCCAAAAGTATAATGTAATATGTA
1 CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
*
769622 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGATCTAAATAATGTGTCG
66 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCG
769687 ACACTTTTGTAGTTTGTGTCGATATTTTTGGTACAGAATGAATGGCAAACAGGGTGCAACAATAA
131 ACACTTTTGTAGTTTGTGTCGATATTTTTGGTACAGAATGAATGGCAAACAGGGTGCAACAATAA
769752 AGTGT
196 AGTGT
769757 CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
1 CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
769822 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCG
66 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCG
* *
769887 ACACTTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATA
131 ACAC-TTTTGTAGTTTGTGTCGATATTTTTGGTACAGAATGAATGGCAAACAGGGTGCAACAATA
769952 AAGTGT
195 AAGTGT
769958 CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
1 CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
* * *
770023 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATTGGTATATAAT-ATGTATC
66 ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTA-AATAATGTGTC
770087 GACA
130 GACA
770091 TTGTTTAATG
Statistics
Matches: 323, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
200 130 0.40
201 190 0.59
202 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
CGATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTA
ATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCG
ACACTTTTGTAGTTTGTGTCGATATTTTTGGTACAGAATGAATGGCAAACAGGGTGCAACAATAA
AGTGT
Found at i:771557 original size:6 final size:6
Alignment explanation
Indices: 771546--771609 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
771536 CAAGCGGTCA
* * * * *
771546 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* *
771594 ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGA
771610 TGATCCAAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:771595 original size:3 final size:3
Alignment explanation
Indices: 771563--771613 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
771553 TGAAGCTGAC
* * * *
771563 GAT GAA GAT GAC GAT GAA GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
771611 GAT
1 GAT
771614 CCAAACAAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:771613 original size:12 final size:12
Alignment explanation
Indices: 771546--771609 Score: 83
Period size: 12 Copynumber: 5.3 Consensus size: 12
771536 CAAGCGGTCA
*
771546 ATGAAGATGAAG
1 ATGACGATGAAG
*
771558 CTGACGATGAAG
1 ATGACGATGAAG
771570 ATGACGATGAAG
1 ATGACGATGAAG
*
771582 ATGACGATGATG
1 ATGACGATGAAG
* *
771594 ATGATGATGATG
1 ATGACGATGAAG
771606 ATGA
1 ATGA
771610 TGATCCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:773131 original size:183 final size:183
Alignment explanation
Indices: 772823--773841 Score: 1867
Period size: 183 Copynumber: 5.6 Consensus size: 183
772813 CAAAGTTTTC
* *
772823 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
772888 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
772953 AACCGGTATAAATATATCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
773006 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGCCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
773071 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
**
773136 AACCGGTATAAATATACCGAATTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
773189 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
773254 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
773319 AACTGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
773372 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTTGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* ** *
773437 CAAAAAGTGTCGATATTTACACATTAGAACCCAGAATTATAATGTAATAGATAATTTTTTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
773502 AATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
773555 ACACTTTTTAATATTGTGTCGGTACTTTCTGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
*
773620 CAAAAAGTGTCGACATTTACACATCGAAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
* *
773685 AACCGGTATAAATATACCGTTTTTATGAGCGAATAGGTCTACAACCTATATCA
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
773738 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
773803 TAAAAAGTGTCGACATTTACACATCGGAACCCATAATTA
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTA
773842 AATAAATGTA
Statistics
Matches: 805, Mismatches: 31, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 805 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:782703 original size:29 final size:29
Alignment explanation
Indices: 782671--782747 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
782661 TCACCCATTT
*
782671 CGAATTAATTACTAGAATAGAACCAAAAC
1 CGAATTATTTACTAGAATAGAACCAAAAC
* * * *
782700 CGAATTATTTACCAAAATAGCACCAAATC
1 CGAATTATTTACTAGAATAGAACCAAAAC
**
782729 TAAATTATTTACTAGAATA
1 CGAATTATTTACTAGAATA
782748 ACACCGGTCA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (29 bp):
CGAATTATTTACTAGAATAGAACCAAAAC
Found at i:786333 original size:25 final size:25
Alignment explanation
Indices: 786305--786369 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
786295 TTATCATTAA
786305 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
786330 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
786355 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
786370 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:786748 original size:23 final size:23
Alignment explanation
Indices: 786717--786789 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
786707 ATAGGTAAAA
*
786717 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
786740 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
786763 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
786786 ATAT
1 ATAT
786790 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:787237 original size:23 final size:23
Alignment explanation
Indices: 787206--787278 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
787196 ATAGGTAAAA
* *
787206 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
787229 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
787252 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
787275 ATAT
1 ATAT
787279 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:787728 original size:23 final size:23
Alignment explanation
Indices: 787697--787769 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
787687 ATAGGTAAAA
*
787697 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
787720 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
787743 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
787766 ATAT
1 ATAT
787770 TGTAAAGTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:788031 original size:490 final size:490
Alignment explanation
Indices: 786369--791108 Score: 8647
Period size: 489 Copynumber: 9.7 Consensus size: 490
786359 AGGTATATAC
786369 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
786434 GTTACGGTATATAATATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
786499 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* *
786564 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTTTAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TTAAA
786629 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
786694 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
325 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
786759 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
*
786824 TACTTTTTTCACTGTCGAAAACATTAATTTAAGGTT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
786860 ATTTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
786925 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
786990 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* * *
787055 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAAAACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
787120 AAAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
*
787184 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAACGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
787249 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
787314 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
* * *
787349 ATCTTTTGAGTGAGTTTTAAGATATTAAATTAGTAATTATATGCGTCTAATAATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
787414 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
787479 TTTGGTTAATATTGTTAAATTT-AATTACTAAATAATATTTTATAAAATATCAAAACAATCAAAT
131 TTTGGTTAATATTGTTAAATTTAAATT-CTAAATATTATTTTATAAAATATCAAAACAATCAAAT
*
787543 AATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
*
787608 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAAGTATGG
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAAGTATGG
*
787673 ATACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
324 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
*
787738 CGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
389 CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
787803 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
454 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
787840 ATCTTTTGAGTGAGTTTTAA-ATATTAATTTAATAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
787904 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
787969 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
788034 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
788098 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
788163 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATG-
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA-GC
788227 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
* *
788292 TACTTTTTTCACTGTGGAAAATATTAATTTAGGGTT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
788328 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCTTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
788393 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* * *
788458 TTTGGTTAATATTGTTAAGTTTAAATTCTAAAAATTATTTTATAAAATATCACAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
788523 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
788588 AAAATTGAAACATAAATTACATAATTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
* *
788653 ACTTTCAATATAATAGGTAAAAATATGACGTAATAGGTAGCACTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
788718 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
* *
788783 ACTTATTTCACTGTAGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
* * ** *
788818 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
788883 GTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
788948 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTA-TTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
789012 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
789077 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTT-TAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
789141 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
789206 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
789271 ACTTTTTTCACTGTGGAAAACATTAATTTAAGTTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
789306 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATCTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
789371 GTTACGATATTTATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
789436 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
789501 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
789565 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
789630 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATG-
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA-GC
*
789694 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
*
789759 TACTTTTTTCACTGTGGAAAATATTAATTTAAGGTT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
789795 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
789860 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
789925 TTTGGTTAATATTGTTAAGTTTAAATTCTAAAAATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
789990 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
790055 AAAATTGAAACATAAATTAAATAATTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
*
790120 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
790185 TTTATATAATGTAATAGGTAGTGCTTTTATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
* * *
790250 ACTTATTTCACTGTAGAAAACATTAATTTAATGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
* * ** *
790285 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
790350 GTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
790415 TTTGGTTAATATTGTTATATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
*
790480 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
790545 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
790610 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
790675 TTTATATAAAGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
790740 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
790775 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
790840 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTTATTATTAT
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATA-TTTATTATTAT
*
790905 CTTTGGTTAATATTGTTATATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
130 CTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAAT
790970 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--A
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
* *
791033 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCTTTTTTATAAAAAAAGTATA
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT--AAAAAGTATG
791098 GACACTTTCAA
323 GACACTTTCAA
791109 CATATTATAA
Statistics
Matches: 4110, Mismatches: 123, Indels: 32
0.96 0.03 0.01
Matches are distributed among these distances:
488 577 0.14
489 1466 0.36
490 1462 0.36
491 605 0.15
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (490 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:788216 original size:23 final size:22
Alignment explanation
Indices: 788185--788257 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
788175 ATAGGTAAAA
*
788185 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAG-GCTT
*
788208 ATATAATGTAATAGGTATGGTTT
1 ATATAATGTAATAGGTA-GGCTT
788231 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAG-GCTT
788254 ATAT
1 ATAT
788258 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (22 bp):
ATATAATGTAATAGGTAGGCTT
Found at i:788273 original size:979 final size:980
Alignment explanation
Indices: 786369--791108 Score: 8640
Period size: 979 Copynumber: 4.8 Consensus size: 980
786359 AGGTATATAC
786369 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
786434 GTTACGGTATATAATATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
786499 TTTGGTTAATATTGTTAAATTTAAATACTAAATAATATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
* *
786564 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTTTAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TTAAA
786629 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
786694 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
325 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
786759 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
* *
786824 TACTTTTTTCACTGTCGAAAACATTAATTTAAGGTTATTTTTTGAGTGAGTTTTAAGATATTAAT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAAT
786889 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAA
520 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAA
*
786954 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATACT
585 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
* *
787019 AAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATT
650 AAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
* *
787084 AATATTATAGGTGGAAAACATGAAAAACTATTAAAAAAAATTGAAACATAAATTACATAACTTT-
715 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTA
787148 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
780 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
*
787213 GTAATAGGTAACGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
845 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
787278 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT
910 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT
787343 AAGGTT
975 AAGGTT
* * *
787349 ATCTTTTGAGTGAGTTTTAAGATATTAAATTAGTAATTATATGCGTCTAATAATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
787414 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
787479 TTTGGTTAATATTGTTAAATTT-AATTACTAAATAATATTTTATAAAATATCAAAACAATCAAAT
131 TTTGGTTAATATTGTTAAATTTAAATT-CTAAATAATATTTTATAAAATATCAAAACAATCAAAT
*
787543 AATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
*
787608 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAAGTATGG
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAAGTATGG
*
787673 ATACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
324 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
*
787738 CGCTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
389 CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
787803 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA-ATATTAA
454 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAA
*
787867 TTTAATAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAA
519 TTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAA
787932 AAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTC
584 AAACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTC
787997 TAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAAT
649 TAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAAT
*
788062 TAATATTATAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTT
714 TAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
* *
788126 AAAAAAAGTATCGATCTTTTTTATAAAAAGTATGAACACTTTCAATATAATAGGTAAAAATATGA
779 AAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
788191 TGTAATAGGTAGCGCTTATATAATGTAATAGGTATG-GTTTATATAATGTAATAGGTAGTGCTTA
844 TGTAATAGGTAGCGCTTATATAATGTAATAGGTA-GCGTTTATATAATGTAATAGGTAGTGCTTA
*
788255 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAATATTAAT
908 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAAT
*
788320 TTAGGGTT
973 TTAAGGTT
*
788328 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCTTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
788393 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
788458 TTTGGTTAATATTGTTAAGTTTAAATTCTAAA-AATTATTTTATAAAATATCACAACAATCAAAT
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAA-TATTTTATAAAATATCAAAACAATCAAAT
788522 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
195 AATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
* *
788587 AAAAATTGAAACATAAATTACATAATTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAA
260 AAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGA
* *
788652 CACTTTCAATATAATAGGTAAAAATATGACGTAATAGGTAGCACTTATATAATGTAATAGGTAGC
325 CACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGC
788717 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
* * *
788782 TACTTATTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAAT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAAT
* ** * * *
788847 TTAGTAATTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATCATTAAATTAAA
520 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAA
788912 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
585 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
788977 AAATATTA-TTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
650 AAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
789041 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTA
715 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTA
*
789106 AAAAAAGTATCGATCATTTTT-TAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
780 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
789170 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
845 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
789235 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT
910 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT
*
789300 AAGTTT
975 AAGGTT
*
789306 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATCTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
789371 GTTACGATATTTATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
*
789436 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
789501 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
789565 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
789630 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATG-
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTA-GC
*
789694 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCA
390 GTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCA
*
789759 TACTTTTTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAAT
455 TACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAAT
789824 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAA
520 TTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAA
*
789889 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAGTTTAAATTCT
585 AACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
*
789954 AAAAATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
650 AAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
* *
790019 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTAAATAATTTTA
715 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTA
790084 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
780 AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGAT
* *
790149 GTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTTTA
845 GTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATA
* *
790214 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTAGAAAACATTAATTT
910 TTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT
*
790279 AATGTT
975 AAGGTT
* * ** *
790285 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
* *
790350 GTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
* *
790415 TTTGGTTAATATTGTTATATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
*
790480 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
*
790545 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
790610 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
790675 TTTATATAAAGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
790740 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATT
790805 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAA
521 TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAA
*
790870 ACAATAAACATATATATTACATATTTTATTATTATCTTTGGTTAATATTGTTATATTTAAATTCT
586 ACAATAAACATATATATTACATA-TTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCT
790935 AAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
650 AAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATT
791000 AATATTGTAGGTGGAAAACATGAAACACTATT--AAAAAATTGAAACATAAATTACATAACTTTA
715 AATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTA
* *
791063 AAAAAAGTATCGATCTTTTTTATAAAAAAAGTATAGACACTTTCAA
780 AAAAAAGTATCGATCCTTTTTAT--AAAAAGTATGGACACTTTCAA
791109 CATATTATAA
Statistics
Matches: 3636, Mismatches: 106, Indels: 35
0.96 0.03 0.01
Matches are distributed among these distances:
977 382 0.11
978 871 0.24
979 1440 0.40
980 788 0.22
981 155 0.04
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.40
Consensus pattern (980 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATT
TAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAA
ACAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTA
AATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTA
ATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAA
AAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATG
TAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATAT
TGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTA
AGGTT
Found at i:788657 original size:22 final size:22
Alignment explanation
Indices: 788612--788657 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
788602 AATTACATAA
*
788612 TTTTAAAAAAAGTATCGATCCT
1 TTTTAAAAAAAGTATCGAACCT
*
788634 TTTTATAAAAAGTAT-GAACACT
1 TTTTAAAAAAAGTATCGAAC-CT
788656 TT
1 TT
788658 CAATATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (22 bp):
TTTTAAAAAAAGTATCGAACCT
Found at i:788708 original size:23 final size:23
Alignment explanation
Indices: 788682--788747 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
788672 AAAATATGAC
*
788682 GTAATAGGTAGCACTTATATAAT
1 GTAATAGGTAGCGCTTATATAAT
*
788705 GTAATAGGTAGCGTTTATATAAT
1 GTAATAGGTAGCGCTTATATAAT
*
788728 GTAATAGGTAGTGCTTATAT
1 GTAATAGGTAGCGCTTATAT
788748 TGTAAAGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (23 bp):
GTAATAGGTAGCGCTTATATAAT
Found at i:789194 original size:23 final size:23
Alignment explanation
Indices: 789163--789235 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
789153 ATAGGTAAAA
*
789163 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
789186 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
789209 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
789232 ATAT
1 ATAT
789236 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:789683 original size:23 final size:22
Alignment explanation
Indices: 789652--789724 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
789642 ATAGGTAAAA
*
789652 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAG-GCTT
*
789675 ATATAATGTAATAGGTATGGTTT
1 ATATAATGTAATAGGTA-GGCTT
789698 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAG-GCTT
789721 ATAT
1 ATAT
789725 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (22 bp):
ATATAATGTAATAGGTAGGCTT
Found at i:790214 original size:25 final size:23
Alignment explanation
Indices: 790142--790205 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
790132 ATAGGTAAAA
* *
790142 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCATTT
*
790165 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCATTT
790188 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
790206 TGCTTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCATTT
Found at i:790663 original size:23 final size:23
Alignment explanation
Indices: 790632--790704 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
790622 ATAGGTAAAA
*
790632 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
790655 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
790678 ATATAAAGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
790701 ATAT
1 ATAT
790705 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:793295 original size:30 final size:31
Alignment explanation
Indices: 793230--793327 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 31
793220 GATTAAATTT
* * * * *
793230 TAATGTAAACCTTGAATTTTAGACATAATAT
1 TAATTTAAACCTTGAAATTTAGATAAAATAA
*
793261 TAATTTAAACC-T-AAACTTTAGATAAAATAC
1 TAATTTAAACCTTGAAA-TTTAGATAAAATAA
* *
793291 TAATTTAACCCTTGAAAATTAGATAAAATAA
1 TAATTTAAACCTTGAAATTTAGATAAAATAA
793322 TAATTT
1 TAATTT
793328 TATCCCTAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
29 2 0.04
30 22 0.39
31 29 0.52
32 3 0.05
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (31 bp):
TAATTTAAACCTTGAAATTTAGATAAAATAA
Found at i:799727 original size:14 final size:14
Alignment explanation
Indices: 799688--799731 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
799678 TGAATGGGTG
799688 TTGGAATTTA-GGAT
1 TTGG-ATTTAGGGAT
* *
799702 TCGGAATTAGGGAT
1 TTGGATTTAGGGAT
799716 TTGGATTTAGGGAT
1 TTGGATTTAGGGAT
799730 TT
1 TT
799732 TGAAACCACG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.25, C:0.02, G:0.32, T:0.41
Consensus pattern (14 bp):
TTGGATTTAGGGAT
Found at i:800284 original size:31 final size:30
Alignment explanation
Indices: 800184--800284 Score: 78
Period size: 31 Copynumber: 3.3 Consensus size: 30
800174 ACAAAGTTAG
* * * *
800184 CATTAAATTTCTCAAACGATTATAAAATAGT
1 CATTAAATTTATTAAA-TATTATAAAATAAT
* ** * *
800215 CATTAAATTTTTTCGAT-TTATCATAATGAT
1 CATTAAATTTATTAAATATTAT-AAAATAAT
*
800245 TATTAAATTTATTAAATTATTATAAAATAAT
1 CATTAAATTTATTAAA-TATTATAAAATAAT
800276 CATTAAATT
1 CATTAAATT
800285 CATCAGTATT
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 4 0.08
30 17 0.33
31 27 0.52
32 4 0.08
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.45
Consensus pattern (30 bp):
CATTAAATTTATTAAATATTATAAAATAAT
Found at i:801554 original size:21 final size:22
Alignment explanation
Indices: 801530--801571 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
801520 TTTAATATAT
801530 ATTTTTTATA-ATATTCTCATA
1 ATTTTTTATATATATTCTCATA
*
801551 ATTTTTTATATATATTTTCAT
1 ATTTTTTATATATATTCTCAT
801572 TTGAGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTTTTATATATATTCTCATA
Found at i:803911 original size:3 final size:3
Alignment explanation
Indices: 803903--803972 Score: 104
Period size: 3 Copynumber: 22.7 Consensus size: 3
803893 TTATTTATTA
*
803903 AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
*
803950 AAT AAT AAT TAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
803973 ATTTAAATGA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
3 55 0.90
4 6 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:805072 original size:23 final size:23
Alignment explanation
Indices: 805046--805093 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
805036 ATAAAGTACA
*
805046 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
805069 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
805092 AT
1 AT
805094 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:805500 original size:21 final size:20
Alignment explanation
Indices: 805470--805521 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
805460 GATAGACACT
*
805470 TTACAATATAACCACTACCTA
1 TTACATTATAACCA-TACCTA
*
805491 TTACATTATAAACGATACCTA
1 TTACATTAT-AACCATACCTA
805512 TTACATTATA
1 TTACATTATA
805522 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.82
22 4 0.14
ACGTcount: A:0.42, C:0.21, G:0.02, T:0.35
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:805532 original size:23 final size:22
Alignment explanation
Indices: 805475--805545 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 22
805465 ACACTTTACA
*
805475 ATATAACCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
*
805498 ATA-AACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
* *
805519 ATATAAGGGCTACCTATTACATC
1 ATATAA-CGCTACCTATTACATT
805542 ATAT
1 ATAT
805546 GTTTACCTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 17 0.41
22 4 0.10
23 20 0.49
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.34
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:806002 original size:39 final size:39
Alignment explanation
Indices: 805948--806034 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
805938 TCAAGTTGTA
*
805948 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
805987 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
806026 GATTTTGAT
1 GATTTTGAT
806035 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:806317 original size:18 final size:18
Alignment explanation
Indices: 806294--806330 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
806284 CGAAATATAT
806294 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
806312 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
806330 A
1 A
806331 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:806659 original size:25 final size:25
Alignment explanation
Indices: 806625--806675 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
806615 TTTTTCCAAA
*
806625 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
806650 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
806675 T
1 T
806676 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:806967 original size:21 final size:22
Alignment explanation
Indices: 806942--806993 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
806932 ACACTTTACA
*
806942 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
806965 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
806988 ATATAA
1 ATATAA
806994 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:806978 original size:23 final size:23
Alignment explanation
Indices: 806952--807014 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
806942 ATATAACCAC
806952 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
806975 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
806998 TACCTATTACATCATAT
1 TACCTATTACATTATAT
807015 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:807357 original size:25 final size:25
Alignment explanation
Indices: 807300--807365 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
807290 CACTCAAAAG
*
807300 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
807325 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
807350 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
807366 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:810139 original size:184 final size:184
Alignment explanation
Indices: 809830--810173 Score: 589
Period size: 184 Copynumber: 1.9 Consensus size: 184
809820 TTCAAATTAC
* *
809830 CGACACTTTTTTAAATGGTATCGACACATTTTTATTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
* *
809895 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
809960 ATATTACAAAATTATCTATTACATTATAATTGTGGGTTCCGATGTGTAAAATGT
131 ATATTACAAAATTACCTATTACATTATAATTGTGGGTTCCGATGTGTAAAATGT
*
810014 CGACACTTTTTTAAATCGTATCGACACATTTTTTTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
*
810079 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * **
810144 ATATTGCAAATTTACCTATTTTATTATAAT
131 ATATTACAAAATTACCTATTACATTATAAT
810174 ATGTTGAAAG
Statistics
Matches: 149, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
184 149 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (184 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTACCTATTACATTATAATTGTGGGTTCCGATGTGTAAAATGT
Found at i:811647 original size:3 final size:3
Alignment explanation
Indices: 811639--811716 Score: 66
Period size: 3 Copynumber: 26.0 Consensus size: 3
811629 ACTTGTTTGG
* * * ** * *
811639 ATC ATC ATC TTC ATC ATC ATC GTC ATC ATC TTC ATC GCC AGC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
811687 GTC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
811717 GTCAGCTTCA
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:811699 original size:42 final size:42
Alignment explanation
Indices: 811640--811728 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
811630 CTTGTTTGGA
* *
811640 TCATCATCTTCATCATCATCGTCATCATCTTCATCGCCAGCT
1 TCATCATCATCATCATCATCATCATCATCTTCATCGCCAGCT
* * *
811682 TCATCGTCATCATCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCATCATCTTCATCGCCAGCT
811724 TCATC
1 TCATC
811729 TTCTGCGACC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.35, G:0.08, T:0.36
Consensus pattern (42 bp):
TCATCATCATCATCATCATCATCATCATCTTCATCGCCAGCT
Found at i:811715 original size:18 final size:18
Alignment explanation
Indices: 811639--811716 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
811629 ACTTGTTTGG
* *
811639 ATCATCATCTTCATCATC
1 ATCATCATCATCGTCATC
* *
811657 ATCGTCATCATCTTCATC
1 ATCATCATCATCGTCATC
** * *
811675 GCCAGCTTCATCGTCATC
1 ATCATCATCATCGTCATC
811693 ATCATCATCATCGTCATC
1 ATCATCATCATCGTCATC
*
811711 TTCATC
1 ATCATC
811717 GTCAGCTTCA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.36
Consensus pattern (18 bp):
ATCATCATCATCGTCATC
Found at i:811727 original size:18 final size:18
Alignment explanation
Indices: 811647--811731 Score: 59
Period size: 21 Copynumber: 4.6 Consensus size: 18
811637 GGATCATCAT
*
811647 CTTCATCATCATCGTCA-
1 CTTCATCTTCATCGTCAG
*
811664 --TCATCTTCATCGCCAG
1 CTTCATCTTCATCGTCAG
* *
811680 CTTCATCGTCATCATCATCAT
1 CTTCATC-T--TCATCGTCAG
811701 CATCGTCATCTTCATCGTCAG
1 C-T--TCATCTTCATCGTCAG
811722 CTTCATCTTC
1 CTTCATCTTC
811732 TGCGACCGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 17
0.68 0.09 0.22
Matches are distributed among these distances:
15 13 0.25
18 13 0.25
19 1 0.02
20 1 0.02
21 17 0.33
22 1 0.02
23 1 0.02
24 5 0.10
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.36
Consensus pattern (18 bp):
CTTCATCTTCATCGTCAG
Found at i:811731 original size:6 final size:6
Alignment explanation
Indices: 811643--811731 Score: 61
Period size: 6 Copynumber: 14.3 Consensus size: 6
811633 GTTTGGATCA
* * * * * *
811643 TCATCT TCATCA TCATCGT CATCATCT TCATCG CCAGCT TCATCG TCATCA
1 TCATCT TCATCT TCATC-T --TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
811694 TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
811732 TGCGACCGCT
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
6 58 0.91
8 1 0.02
9 5 0.08
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.37
Consensus pattern (6 bp):
TCATCT
Found at i:813524 original size:199 final size:199
Alignment explanation
Indices: 813184--813949 Score: 1413
Period size: 199 Copynumber: 3.9 Consensus size: 199
813174 TTTAAATTAG
813184 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
813249 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
813314 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
813379 AAAA
196 AAAA
*
813383 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGATATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
813448 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
813513 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGG-AA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
813577 AAAA
196 AAAA
813581 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGAC--ATTCTCTCAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
813643 ATTGTACCGGTTAGATTG-AAAATTATATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
813707 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
813770 AAAA
196 AAAA
813774 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
813839 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
* *
813904 TTGACACTTTTT-TATATGGATCGACACTTTATGGGTGCACCCTGTT
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTT
813950 GGCCATATGT
Statistics
Matches: 552, Mismatches: 8, Indels: 15
0.96 0.01 0.03
Matches are distributed among these distances:
192 2 0.00
193 99 0.18
194 51 0.09
195 38 0.07
196 39 0.07
197 27 0.05
198 101 0.18
199 195 0.35
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
AAAA
Found at i:814098 original size:19 final size:19
Alignment explanation
Indices: 814066--814113 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
814056 ATATATTCAC
814066 ATACAAAA-TATAAATCGT
1 ATACAAAATTATAAATCGT
*
814084 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
814103 ATACAAAATTA
1 ATACAAAATTA
814114 ACTCGACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:815939 original size:33 final size:33
Alignment explanation
Indices: 815902--815967 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
815892 CATCTTAATA
*
815902 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
815935 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
815968 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:816040 original size:21 final size:21
Alignment explanation
Indices: 816000--816064 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
815990 CCCCTTATGC
* *
816000 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
816021 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
816042 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
816063 CT
1 CT
816065 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:818325 original size:19 final size:20
Alignment explanation
Indices: 818293--818338 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
818283 TCCGGTATCA
818293 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
818312 TTGTTACC-GTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
818332 TTTTACC
1 TTTTACC
818339 TGTTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.17, C:0.17, G:0.09, T:0.57
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:818484 original size:20 final size:20
Alignment explanation
Indices: 818458--818503 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
818448 CACTTTTAAA
818458 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
818477 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
818498 TTTACC
1 TTTACC
818504 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:820866 original size:15 final size:17
Alignment explanation
Indices: 820832--820880 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
820822 AGATATTCAT
* *
820832 AAAAATTAAATATA-AA
1 AAAAAATAAATATATTA
*
820848 AAAAAAAAAAT-TATTA
1 AAAAAATAAATATATTA
820864 AAAAAATAAATATATTA
1 AAAAAATAAATATATTA
820881 TTAAAAAGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 2 0.07
16 20 0.74
17 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAAATAAATATATTA
Found at i:820903 original size:23 final size:20
Alignment explanation
Indices: 820844--820887 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
820834 AAATTAAATA
820844 TAAAAAAA-AAA-AAATTAT
1 TAAAAAAATAAATAAATTAT
*
820862 TAAAAAAATAAATATATTAT
1 TAAAAAAATAAATAAATTAT
820882 TAAAAA
1 TAAAAA
820888 GACTATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 12 0.52
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAAAATAAATAAATTAT
Found at i:826353 original size:2 final size:2
Alignment explanation
Indices: 826346--826385 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
826336 AACTATAAAT
*
826346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
826386 GTTTTTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:826421 original size:7 final size:7
Alignment explanation
Indices: 826399--826458 Score: 56
Period size: 7 Copynumber: 8.7 Consensus size: 7
826389 TTTAAAAAAT
*
826399 TTTTATG
1 TTTTATA
826406 TTTTAATA
1 TTTT-ATA
826414 TTTTATA
1 TTTTATA
826421 TTTTATCA
1 TTTTAT-A
826429 TTTTATA
1 TTTTATA
826436 -TTTATGA
1 TTTTAT-A
826443 TTTT-T-
1 TTTTATA
826448 TTTTAT-
1 TTTTATA
826454 TTTTA
1 TTTTA
826459 ATAATATTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
5 4 0.09
6 11 0.23
7 16 0.34
8 16 0.34
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (7 bp):
TTTTATA
Found at i:826447 original size:15 final size:15
Alignment explanation
Indices: 826399--826438 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
826389 TTTAAAAAAT
*
826399 TTTTATGTTTTAAT-A
1 TTTTATATTTT-ATCA
826414 TTTTATATTTTATCA
1 TTTTATATTTTATCA
826429 TTTTATATTT
1 TTTTATATTT
826439 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.09
15 21 0.91
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTATATTTTATCA
Found at i:826507 original size:30 final size:31
Alignment explanation
Indices: 826442--826507 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
826432 TATATTTATG
* *
826442 ATTTTTTTTTATTTTTAATAATATTTTTAGT
1 ATTTTTTTTTATTTTTAATAATATTTTGACT
*
826473 -TTTTTTTTTATTTTT-TTAA-ATATTTGACT
1 ATTTTTTTTTATTTTTAATAATAT-TTTGACT
826502 ATTTTT
1 ATTTTT
826508 ATATTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 2 0.07
29 8 0.27
30 20 0.67
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (31 bp):
ATTTTTTTTTATTTTTAATAATATTTTGACT
Found at i:826522 original size:15 final size:15
Alignment explanation
Indices: 826502--826533 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
826492 ATATTTGACT
*
826502 ATTTTTATATTTAAA
1 ATTTTTAAATTTAAA
826517 ATTTTTAAATTTAAA
1 ATTTTTAAATTTAAA
826532 AT
1 AT
826534 AAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTTAAATTTAAA
Found at i:828685 original size:28 final size:30
Alignment explanation
Indices: 828644--828702 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
828634 AGACAAAGCT
* *
828644 AGAATATTTATTTG-GGGTGTCAAATTTAG
1 AGAATATTTATTTGAAGGTATCAAATTTAG
*
828673 AGAA-ATTTTTTTGAAGGTATCAAATTTAG
1 AGAATATTTATTTGAAGGTATCAAATTTAG
828702 A
1 A
828703 AGTTGTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.36, C:0.03, G:0.20, T:0.41
Consensus pattern (30 bp):
AGAATATTTATTTGAAGGTATCAAATTTAG
Found at i:829493 original size:3 final size:3
Alignment explanation
Indices: 829479--829550 Score: 135
Period size: 3 Copynumber: 23.7 Consensus size: 3
829469 AATTAAAAAA
829479 TAT TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
829525 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
829551 AGTGTGTTTA
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 65 0.96
4 3 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:843551 original size:7 final size:7
Alignment explanation
Indices: 843520--843590 Score: 55
Period size: 7 Copynumber: 10.4 Consensus size: 7
843510 CTTGAAGAAA
*
843520 AAAAAAG
1 AAAAATG
843527 AACAAAT-
1 AA-AAATG
843534 AAAAGATG
1 AAAA-ATG
843542 AAAAATG
1 AAAAATG
843549 AAAAAAATG
1 --AAAAATG
843558 AAAAA-G
1 AAAAATG
843564 -AAAA--
1 AAAAATG
843568 AAAAATG
1 AAAAATG
843575 AAAAATG
1 AAAAATG
843582 AAAAA-G
1 AAAAATG
843588 AAA
1 AAA
843591 TGAAAAAATA
Statistics
Matches: 55, Mismatches: 1, Indels: 17
0.75 0.01 0.23
Matches are distributed among these distances:
5 8 0.15
6 7 0.13
7 26 0.47
8 7 0.13
9 7 0.13
ACGTcount: A:0.77, C:0.01, G:0.13, T:0.08
Consensus pattern (7 bp):
AAAAATG
Found at i:843570 original size:18 final size:18
Alignment explanation
Indices: 843534--843597 Score: 89
Period size: 18 Copynumber: 3.7 Consensus size: 18
843524 AAGAACAAAT
*
843534 AAAAGATGAAAAATG--A
1 AAAAAATGAAAAATGAAA
843550 AAAAAATGAAAAA-GAAA
1 AAAAAATGAAAAATGAAA
843567 AAAAAATGAAAAATGAAA
1 AAAAAATGAAAAATGAAA
*
843585 AAGAAATGAAAAA
1 AAAAAATGAAAAA
843598 ATAAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.02
16 12 0.28
17 14 0.33
18 16 0.37
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (18 bp):
AAAAAATGAAAAATGAAA
Found at i:843606 original size:18 final size:17
Alignment explanation
Indices: 843517--843604 Score: 78
Period size: 17 Copynumber: 5.3 Consensus size: 17
843507 ATGCTTGAAG
* *
843517 AAAAAAAAAGAACAAAT
1 AAAAAAAATGAAAAAAT
*
843534 --AAAAGATG-AAAAAT
1 AAAAAAAATGAAAAAAT
*
843548 GAAAAAAATGAAAAAGA-
1 AAAAAAAATGAAAAA-AT
843565 AAAAAAAATG-AAAAAT
1 AAAAAAAATGAAAAAAT
843581 GAAAAAGAAATGAAAAAAT
1 -AAAAA-AAATGAAAAAAT
843600 AAAAA
1 AAAAA
843605 GAGAAAAGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
14 5 0.09
15 7 0.12
16 11 0.19
17 18 0.31
18 11 0.19
19 6 0.10
ACGTcount: A:0.78, C:0.01, G:0.11, T:0.09
Consensus pattern (17 bp):
AAAAAAAATGAAAAAAT
Found at i:843611 original size:33 final size:33
Alignment explanation
Indices: 843516--843611 Score: 117
Period size: 33 Copynumber: 2.9 Consensus size: 33
843506 TATGCTTGAA
* *
843516 GAAAAAAAAAGAACAAAT-AAAAGATGAAAAAT
1 GAAAAAAAATGAAAAAATAAAAAGATGAAAAAT
* *
843548 G-AAAAAAATGAAAAAGAAAAAAAAATGAAAAAT
1 GAAAAAAAATGAAAAA-ATAAAAAGATGAAAAAT
843581 GAAAAAGAAATGAAAAAATAAAAAGA-GAAAA
1 GAAAAA-AAATGAAAAAATAAAAAGATGAAAA
843612 GGAGGGTTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
31 12 0.22
32 2 0.04
33 19 0.35
34 11 0.20
35 10 0.19
ACGTcount: A:0.77, C:0.01, G:0.14, T:0.08
Consensus pattern (33 bp):
GAAAAAAAATGAAAAAATAAAAAGATGAAAAAT
Found at i:845084 original size:105 final size:102
Alignment explanation
Indices: 844836--845087 Score: 288
Period size: 102 Copynumber: 2.4 Consensus size: 102
844826 CTCGCTTGAG
* *
844836 GGATCGACATTTCCAACGAAGAGTTCATAATGAGAAGAACTCATCATAAAGGAGAAAGTTCATAA
1 GGATCAACATTTCCAA--AAGAGTTCATAATGAGAAGAACTCATCATAAAGGAGAAAGGTCATAA
* * * *
844901 TGAGAAGAACTTCCTTTCAAATTCACCACAGATGGAGGT
64 TGAGAAAAACTTCCTTTCAAATCCACCACAAAAGGAGGT
* * ** * * *
844940 GAACCAACATTTCCTGAAGAGTTCATAATGAGAAGAACTCGTCCTAATGGAGAAAGGTCATAATG
1 GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATCATAAAGGAGAAAGGTCATAATG
* * * **
845005 AGAAAAACATGTTCTTTCTAAGTCCACCGCAAAAGGATTT
66 AGAAAAAC-T-TCCTTTC-AAATCCACCACAAAAGGAGGT
*
845045 GGATCAACATTTCCAAAAGAGTTCATAATGAGAATAACTCATC
1 GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATC
845088 CACGAGAAAA
Statistics
Matches: 121, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
102 52 0.43
103 1 0.01
104 17 0.14
105 51 0.42
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (102 bp):
GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATCATAAAGGAGAAAGGTCATAATG
AGAAAAACTTCCTTTCAAATCCACCACAAAAGGAGGT
Found at i:845106 original size:105 final size:101
Alignment explanation
Indices: 844836--845123 Score: 290
Period size: 105 Copynumber: 2.8 Consensus size: 101
844826 CTCGCTTGAG
* *
844836 GGATCGACATTTCCAACGAAGAGTTCATAATGAGAAGAACTCATCATAAAGGAGAAAGTTCATAA
1 GGATCAACATTTCCAA--AAGAGTTCATAATGAGAAGAACTCATC--CAAGGAGAAAGTTCATAA
* * * *
844901 TGAGAAGAACT-TCCTTTCAAATTCACCACAGATGGAGGT
62 TGAGAAGAACTGTTCTTTCAAATCCACCACAAAAGGAGGT
* * ** * *
844940 GAACCAACATTTCCTGAAGAGTTCATAATGAGAAGAACTCGTCCTAATGGAGAAAGGTCATAATG
1 GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATCC-AA-GGAGAAAGTTCATAATG
* * * **
845005 AGAAAAACATGTTCTTTCTAAGTCCACCGCAAAAGGATTT
64 AGAAGAAC-TGTTCTTTC-AAATCCACCACAAAAGGAGGT
* * *
845045 GGATCAACATTTCCAAAAGAGTTCATAATGAGAATAACTCATCCACGAGAAAAAAGTTCATAATG
1 GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATCCA--AGGAGAAAGTTCATAATG
845110 AGAAGAACTTGTTC
64 AGAAGAAC-TGTTC
845124 AATCTAACGA
Statistics
Matches: 149, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
101 2 0.01
102 49 0.33
103 1 0.01
104 18 0.12
105 78 0.52
106 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (101 bp):
GGATCAACATTTCCAAAAGAGTTCATAATGAGAAGAACTCATCCAAGGAGAAAGTTCATAATGAG
AAGAACTGTTCTTTCAAATCCACCACAAAAGGAGGT
Found at i:845267 original size:3 final size:3
Alignment explanation
Indices: 845252--845320 Score: 115
Period size: 3 Copynumber: 23.7 Consensus size: 3
845242 AATTAAAAAA
*
845252 TAT TAT TA- AAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
845298 TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
845321 AGTGTGTTTA
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 3 0.05
3 59 0.95
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:849157 original size:2 final size:2
Alignment explanation
Indices: 849150--849176 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
849140 AACCGCTTAT
849150 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
849177 GTTGTTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:852586 original size:98 final size:98
Alignment explanation
Indices: 852417--852612 Score: 374
Period size: 98 Copynumber: 2.0 Consensus size: 98
852407 ACATCTACAG
852417 AGATCATACGATAGAGGAGAATAATATTTCATGGACATGAAACCATGGACTGCATCAGTAGAAAT
1 AGATCATACGATAGAGGAGAATAATATTTCATGGACATGAAACCATGGACTGCATCAGTAGAAAT
852482 TATTCAGGCAGTAGGAAGTGGGAGGGAAGCATT
66 TATTCAGGCAGTAGGAAGTGGGAGGGAAGCATT
* *
852515 AGATCATACGATAGAGGAGAATAATATTTCATTGACATGAAACCATGGACTGCATCAGTAGATAT
1 AGATCATACGATAGAGGAGAATAATATTTCATGGACATGAAACCATGGACTGCATCAGTAGAAAT
852580 TATTCAGGCAGTAGGAAGTGGGAGGGAAGCATT
66 TATTCAGGCAGTAGGAAGTGGGAGGGAAGCATT
852613 GTACAAACAA
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.23
Consensus pattern (98 bp):
AGATCATACGATAGAGGAGAATAATATTTCATGGACATGAAACCATGGACTGCATCAGTAGAAAT
TATTCAGGCAGTAGGAAGTGGGAGGGAAGCATT
Found at i:865394 original size:14 final size:16
Alignment explanation
Indices: 865374--865417 Score: 74
Period size: 14 Copynumber: 2.9 Consensus size: 16
865364 TAACAGACTT
865374 GTCTGTTTTCTACA-A
1 GTCTGTTTTCTACACA
865389 -TCTGTTTTCTACACA
1 GTCTGTTTTCTACACA
865404 GTCTGTTTTCTACA
1 GTCTGTTTTCTACA
865418 TGGTATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.48
15 1 0.04
16 13 0.48
ACGTcount: A:0.18, C:0.23, G:0.11, T:0.48
Consensus pattern (16 bp):
GTCTGTTTTCTACACA
Found at i:869460 original size:14 final size:14
Alignment explanation
Indices: 869441--869468 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
869431 TAACAGACTT
869441 GTCTGTTTTCTACA
1 GTCTGTTTTCTACA
869455 GTCTGTTTTCTACA
1 GTCTGTTTTCTACA
869469 CCTATGAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (14 bp):
GTCTGTTTTCTACA
Found at i:871002 original size:20 final size:22
Alignment explanation
Indices: 870957--871014 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
870947 TGCATGGTAG
870957 TGCATCGATGCACCTGTTAAAGAA
1 TGCATCGATGCA-CTGTT-AAGAA
870981 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
*
871001 TGCACCGATGCACT
1 TGCATCGATGCACT
871015 TCAATGAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 3 0.09
24 12 0.36
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:871838 original size:28 final size:28
Alignment explanation
Indices: 871798--871868 Score: 142
Period size: 28 Copynumber: 2.5 Consensus size: 28
871788 GGACATAGTA
871798 GTCCTTCGGGACATATGTGTTATATGTG
1 GTCCTTCGGGACATATGTGTTATATGTG
871826 GTCCTTCGGGACATATGTGTTATATGTG
1 GTCCTTCGGGACATATGTGTTATATGTG
871854 GTCCTTCGGGACATA
1 GTCCTTCGGGACATA
871869 GTGGTCCTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (28 bp):
GTCCTTCGGGACATATGTGTTATATGTG
Found at i:871873 original size:46 final size:48
Alignment explanation
Indices: 871823--871933 Score: 199
Period size: 46 Copynumber: 2.3 Consensus size: 48
871813 TGTGTTATAT
871823 GTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA-TA-
1 GTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACACTAC
871869 GTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACATCTAC
1 GTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA-CTAC
871918 GTGGTCCTTCGGGACA
1 GTGGTCCTTCGGGACA
871934 AATTCTACGC
Statistics
Matches: 62, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
46 44 0.71
48 2 0.03
49 16 0.26
ACGTcount: A:0.16, C:0.20, G:0.31, T:0.33
Consensus pattern (48 bp):
GTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACACTAC
Found at i:871874 original size:18 final size:18
Alignment explanation
Indices: 871851--871886 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
871841 TGTGTTATAT
871851 GTGGTCCTTCGGGACATA
1 GTGGTCCTTCGGGACATA
871869 GTGGTCCTTCGGGACATA
1 GTGGTCCTTCGGGACATA
871887 TGTGTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (18 bp):
GTGGTCCTTCGGGACATA
Found at i:871900 original size:74 final size:74
Alignment explanation
Indices: 871774--871913 Score: 262
Period size: 74 Copynumber: 1.9 Consensus size: 74
871764 GTCGAGAGTC
871774 TATGCGGTCCTTCGGGACATAGTAGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA
1 TATGCGGTCCTTCGGGACATAGTAGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA
871839 TATGTGTTA
66 TATGTGTTA
* *
871848 TATGTGGTCCTTCGGGACATAGTGGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA
1 TATGCGGTCCTTCGGGACATAGTAGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA
871913 T
66 T
871914 CTACGTGGTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (74 bp):
TATGCGGTCCTTCGGGACATAGTAGTCCTTCGGGACATATGTGTTATATGTGGTCCTTCGGGACA
TATGTGTTA
Found at i:875980 original size:12 final size:12
Alignment explanation
Indices: 875963--875987 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
875953 ATCATTAACT
875963 GTAACATCAACC
1 GTAACATCAACC
875975 GTAACATCAACC
1 GTAACATCAACC
875987 G
1 G
875988 AAACCACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (12 bp):
GTAACATCAACC
Found at i:881193 original size:31 final size:32
Alignment explanation
Indices: 881120--881197 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 32
881110 GATACATTTG
* * *
881120 ATGAACATTTTATAATAGTTCGATAAAATTTA
1 ATGATCATCTTATAATAGTTCGATAAAATATA
* *
881152 ATGATAATCTTATAATTGTTCGAT-AAATATA
1 ATGATCATCTTATAATAGTTCGATAAAATATA
881183 ATGATCATCTTATAA
1 ATGATCATCTTATAA
881198 CTATTGAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 20 0.50
32 20 0.50
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (32 bp):
ATGATCATCTTATAATAGTTCGATAAAATATA
Found at i:883615 original size:23 final size:23
Alignment explanation
Indices: 883589--883657 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
883579 CACCACAGCT
* *
883589 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCAAAGTGCCA
* * * *
883612 CGTAGAATTGCACCAAAATGTCG
1 CGTAGAAATGCACCAAAGTGCCA
883635 CGTAGAAATGCACCAAAGTGCCA
1 CGTAGAAATGCACCAAAGTGCCA
883658 TATAAGGTTG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCAAAGTGCCA
Found at i:889292 original size:17 final size:17
Alignment explanation
Indices: 889265--889303 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
889255 AATTTACAAT
889265 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
889281 TAATTATAAATAATATC
1 TAATTATAAATAATATC
889298 TAATTA
1 TAATTA
889304 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:890698 original size:18 final size:18
Alignment explanation
Indices: 890675--890721 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
890665 TCCATAACAA
890675 TGTGGATTATAGTTTTTG
1 TGTGGATTATAGTTTTTG
890693 TGTGGATTATAGTTTTTG
1 TGTGGATTATAGTTTTTG
*
890711 TATGGATTATA
1 TGTGGATTATA
890722 TATGTGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (18 bp):
TGTGGATTATAGTTTTTG
Found at i:894790 original size:44 final size:44
Alignment explanation
Indices: 894699--894790 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 44
894689 TTTGTATTAA
* * * *
894699 TTTAGTTATTAAATTTTAAAATTTAAAATTTTAGCAATAATTTT
1 TTTAATTATTAAATTTTAAAATTTAAAATTTAAACAATAATTGT
* *
894743 TTTAATTATTAAATTTTAACATATTT-TAATTTAAACACTAA-TGT
1 TTTAATTATTAAATTTTAA-A-ATTTAAAATTTAAACAATAATTGT
894787 TTTA
1 TTTA
894791 CAATAACTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
44 24 0.60
45 12 0.30
46 4 0.10
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.52
Consensus pattern (44 bp):
TTTAATTATTAAATTTTAAAATTTAAAATTTAAACAATAATTGT
Found at i:894864 original size:30 final size:30
Alignment explanation
Indices: 894823--894917 Score: 131
Period size: 30 Copynumber: 3.2 Consensus size: 30
894813 TACTAACTCT
894823 TTGACATTTAAATGATGTAACAGTTTAATA
1 TTGACATTTAAATGATGTAACAGTTTAATA
* *
894853 TTGATATTTAAATAATGT--CAGTTTAATA
1 TTGACATTTAAATGATGTAACAGTTTAATA
* *
894881 TTGACATTCAAATGATGTAACAGTTTGATA
1 TTGACATTTAAATGATGTAACAGTTTAATA
*
894911 TTAACAT
1 TTGACAT
894918 AGAAAATAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.45
30 31 0.55
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (30 bp):
TTGACATTTAAATGATGTAACAGTTTAATA
Found at i:895157 original size:139 final size:138
Alignment explanation
Indices: 894908--895171 Score: 386
Period size: 139 Copynumber: 1.9 Consensus size: 138
894898 TAACAGTTTG
* *
894908 ATATTAACATAGAAAATAAAAATAGTTTTTAATTTATTATATTTTTCATGAATTTAAGTATACGA
1 ATATTAACAAAGAAAATAAAAATAGTTTTTAATTTATTATATTTTCCATGAATTTAAGTATACGA
** * * *
894973 TCATTTTTAATTATTATCAAAAGTCATTATTTATCAATGATTTTTACGATCACTCTACATATCAC
66 TCATCATTAATTATTATCAAAAGTCATCATCTATCAATGAGTTTTACGATCACTCTACATATCAC
895038 ACAATTTA
131 ACAATTTA
* * *
895046 ATATTAACAAAGAAACTAAAAATAGTTTTTTAATTTATTATATTTTCCATGAATTTGAA-TTTAT
1 ATATTAACAAAGAAAATAAAAATAG-TTTTTAATTTATTATATTTTCCATGAATTT-AAGTATAC
* * *
895110 GATCATCATTAATTATTGTCGAAAGTCATCATCTATCGATGAGTTTTACGATCACTCTACAT
64 GATCATCATTAATTATTATCAAAAGTCATCATCTATCAATGAGTTTTACGATCACTCTACAT
895172 GTCAATAAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
138 23 0.21
139 86 0.77
140 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (138 bp):
ATATTAACAAAGAAAATAAAAATAGTTTTTAATTTATTATATTTTCCATGAATTTAAGTATACGA
TCATCATTAATTATTATCAAAAGTCATCATCTATCAATGAGTTTTACGATCACTCTACATATCAC
ACAATTTA
Found at i:905219 original size:16 final size:17
Alignment explanation
Indices: 905198--905230 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
905188 TTAACGTGAC
905198 TAAAATATAAAT-AAAT
1 TAAAATATAAATGAAAT
905214 TAAAATATAAATGAAAT
1 TAAAATATAAATGAAAT
905231 CGTAAAAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
TAAAATATAAATGAAAT
Found at i:906648 original size:22 final size:22
Alignment explanation
Indices: 906618--906687 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
906608 GGACATACAT
*
906618 ATATTAATAATATTATAAATAA
1 ATATAAATAATATTATAAATAA
* *
906640 ATATAAATAAAATTTTAAAGTAA
1 ATATAAATAATATTATAAA-TAA
**
906663 ATA-AAATTAATAAAATAAATAA
1 ATATAAA-TAATATTATAAATAA
906685 ATA
1 ATA
906688 ATTATAAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 25 0.64
23 14 0.36
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (22 bp):
ATATAAATAATATTATAAATAA
Found at i:906665 original size:17 final size:18
Alignment explanation
Indices: 906635--906685 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
906625 TAATATTATA
906635 AATAAATATAAATAAAATT
1 AATAAA-ATAAATAAAATT
* *
906654 -TTAAAGTAAATAAAATT
1 AATAAAATAAATAAAATT
906671 AATAAAATAAATAAA
1 AATAAAATAAATAAA
906686 TAATTATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAAAATAAATAAAATT
Found at i:906674 original size:9 final size:9
Alignment explanation
Indices: 906632--906685 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
906622 TAATAATATT
906632 ATAAATAAA
1 ATAAATAAA
906641 TATAAATAAA
1 -ATAAATAAA
**
906651 AT-TTTAAA
1 ATAAATAAA
*
906659 GTAAATAAA
1 ATAAATAAA
*
906668 ATTAATAAA
1 ATAAATAAA
906677 ATAAATAAA
1 ATAAATAAA
906686 TAATTATAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
8 5 0.14
9 21 0.60
10 9 0.26
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
ATAAATAAA
Found at i:907027 original size:28 final size:29
Alignment explanation
Indices: 906995--907050 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
906985 GAACAAAGCT
*
906995 AGAAAAGTTA-ATTTGGTGTTAAATTTAA
1 AGAAAAGTTATATTTGGTGTCAAATTTAA
* *
907023 AGAAAATTTATTTTTGGTGTCAAATTTA
1 AGAAAAGTTATATTTGGTGTCAAATTTA
907051 GAAATTGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.43
Consensus pattern (29 bp):
AGAAAAGTTATATTTGGTGTCAAATTTAA
Done.