Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008187.1 Hibiscus syriacus cultivar Beakdansim tig00110794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1300289
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 5 of 5
Found at i:1149754 original size:29 final size:30
Alignment explanation
Indices: 1149676--1149763 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 30
1149666 ATATATATTA
* *
1149676 TTTCATTTATTTATTTATTTATTTATTTTTCC
1 TTTCATTTTTTTATTTA-TTATTT-TTATTCC
* *
1149708 TTTTATTTTATTTTTTTACTTATTTTTATT-C
1 TTTCATTTT-TTTATTTA-TTATTTTTATTCC
1149739 -TTCATTTTTTTATTTATTCATTTTT
1 TTTCATTTTTTTATTTATT-ATTTTT
1149764 TCCCTCTAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 13 0.28
30 7 0.15
31 1 0.02
32 11 0.23
33 13 0.28
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (30 bp):
TTTCATTTTTTTATTTATTATTTTTATTCC
Found at i:1152742 original size:23 final size:22
Alignment explanation
Indices: 1152686--1152752 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
1152676 GTGAAGATCC
*
1152686 AATCAAGAACAAAAAAGCAA-AG
1 AATCAAGAACAAAAAA-AAAGAG
* *
1152708 AAGCAAAAAACAAATAAAAAAGAG
1 AATC-AAGAACAAA-AAAAAAGAG
*
1152732 AATCAAGAACAAAAGAAAAGA
1 AATCAAGAACAAAAAAAAAGA
1152753 AGCAAAAATC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
22 10 0.28
23 18 0.50
24 8 0.22
ACGTcount: A:0.72, C:0.10, G:0.13, T:0.04
Consensus pattern (22 bp):
AATCAAGAACAAAAAAAAAGAG
Found at i:1152756 original size:44 final size:45
Alignment explanation
Indices: 1152686--1152773 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 45
1152676 GTGAAGATCC
*
1152686 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATA-AAAAAGAG
1 AATCAAGAAC-AAAAAGAAAAGAAGCAAAAAACAAA-AGAAAAAGAG
*
1152732 AATCAAGAAC-AAAAGAAAAGAAGCAAAAATCAAAAGAAAAAG
1 AATCAAGAACAAAAAGAAAAGAAGCAAAAAACAAAAGAAAAAG
1152774 GACAAAAAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 1 0.03
44 28 0.72
46 10 0.26
ACGTcount: A:0.72, C:0.10, G:0.14, T:0.05
Consensus pattern (45 bp):
AATCAAGAACAAAAAGAAAAGAAGCAAAAAACAAAAGAAAAAGAG
Found at i:1152772 original size:22 final size:21
Alignment explanation
Indices: 1152704--1152781 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
1152694 ACAAAAAAGC
*
1152704 AAAGAAGCAAAAAACAAATAAAA
1 AAAGAAGC-AAAAACAAA-AGAA
* *
1152727 AAGAGAATCAAGAACAAAAG-A
1 AA-AGAAGCAAAAACAAAAGAA
1152748 AAAGAAGCAAAAATCAAAAGAA
1 AAAGAAGCAAAAA-CAAAAGAA
*
1152770 AAAGGA-CAAAAA
1 AAAGAAGCAAAAA
1152782 GCACATGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 9 0.20
21 15 0.33
22 7 0.15
23 10 0.22
24 5 0.11
ACGTcount: A:0.73, C:0.09, G:0.14, T:0.04
Consensus pattern (21 bp):
AAAGAAGCAAAAACAAAAGAA
Found at i:1153450 original size:22 final size:22
Alignment explanation
Indices: 1153376--1153452 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
1153366 GCTACCCCAT
*
1153376 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
* *
1153398 CAAACCTATGAGCATCAAATGT
1 CAAACCTTTGAGCATCAAATGC
1153420 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
1153442 CAAACCTTTGA
1 CAAACCTTTGA
1153453 CCAAACATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:1153884 original size:18 final size:19
Alignment explanation
Indices: 1153861--1153897 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
1153851 TCAACATCAA
1153861 ATATTGGGGCATT-TTTGG
1 ATATTGGGGCATTATTTGG
1153879 ATATTGGGGCATTATTTGG
1 ATATTGGGGCATTATTTGG
1153898 GGATTTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (19 bp):
ATATTGGGGCATTATTTGG
Found at i:1154379 original size:106 final size:106
Alignment explanation
Indices: 1154191--1155762 Score: 2334
Period size: 106 Copynumber: 14.9 Consensus size: 106
1154181 TCTAGAATAG
* * **
1154191 AGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAACTTCTCAATTTCAGAGTAAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1154256 TTCAACTTCACATCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
1154297 AGTTCAACTTCACAACGAAGGGACCACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1154362 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
1154403 AGTTCAAATTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
1154468 TTCAACTTCACAGCGAATGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
1154509 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1154574 TTCAACTTCACAGCGAAGGATATTGGACTCCAAACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
1154615 AGTTCAACTTCATGACGAAAGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
1154680 TTCAACTTTACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
1154721 AGTTCAACTTCACGTCGAAGGAACCGCTGGTTGTCAATAAACAATTTCCCAATTTCATAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
1154786 TTCAACGTCACAGCGTAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
*
1154827 AGTTCAACTTC-CAACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
1154891 TTCAACTTCACAGCGAAGGTTATTGGACTCCAGATAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * **
1154932 AGTTCAACTTCACAACGAAGGAACCGCTGGTTGTCAACAAACAACTTATCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1154997 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * *
1155038 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCATAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1155103 TTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
1155144 AGTTCAACTTCACGACGAAGGGAACACTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1155209 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * * *
1155250 TGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTTAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1155315 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
1155356 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * *
1155421 TTTAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
*
1155462 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* * * *
1155527 TTCAACTTCTCAGTGAAGGATCTTGGAC-CCAAGACAACACA
66 TTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCA
* * * * * * * *
1155568 AGCTCAACTTCACGACAAAGGGGCTGCTGATTGTCAA-CAA-AA-TT-TC-A-TTCAGAGTCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
1155627 TTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* ** * * * ** * *
1155668 AGTTCAACTTCACAACGAAGGGAATGCTGATTGTCAACAAACAATTTCCCGGTTCCAGAGTCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
*
1155733 TTCAACTTCAC-GACGGAGGATATTGGACTC
66 TTCAACTTCACAG-CGAAGGATATTGGACTC
1155763 GGAACAATGC
Statistics
Matches: 1333, Mismatches: 123, Indels: 20
0.90 0.08 0.01
Matches are distributed among these distances:
100 78 0.06
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 99 0.07
106 1142 0.86
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
Found at i:1156546 original size:37 final size:37
Alignment explanation
Indices: 1156489--1156593 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
1156479 CATTTTCGTC
*
1156489 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTATGATTCAAACTCCTAAAAATAGGATAAAATT
* ** * * *
1156526 TTGGTATGATTCAAACTCCTAAAAATATGATAGAGTT
1 CTACTATGATTCAAACTCCTAAAAATAGGATAAAATT
* *
1156563 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTATGATTCAAACTCCTAAAAATAGGAT
1156594 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (37 bp):
CTACTATGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:1157148 original size:2 final size:2
Alignment explanation
Indices: 1157132--1157164 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
1157122 TTTTTAATAC
*
1157132 TA TA TT TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1157165 CTTTTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:1157163 original size:68 final size:65
Alignment explanation
Indices: 1157006--1157163 Score: 149
Period size: 65 Copynumber: 2.4 Consensus size: 65
1156996 CATTATTGTC
* ** * *
1157006 ATTATATAAATATATATACGTATGTTTTTTTAAATGATTTTCAATTGATTTTTTTTACACTATAT
1 ATTATATATATATATATATATATATTTTTTTAAATGATATTCAATTGATTTTTTTTACACTATAT
* * * * * * *
1157071 ATTAT-TATTATATGTACATATATATTTTTTT-ATTTATATTCATTTGGTTATTTTTTAATACTA
1 ATTATATA-TATATATATATATATATTTTTTTAAATGATATTCAATTGATT-TTTTTT-ACACTA
1157134 TATTT
63 TA--T
1157139 ATTATATATATATATATATATATAT
1 ATTATATATATATATATATATATAT
1157164 ACTTTTTTTA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
64 15 0.21
65 28 0.38
66 7 0.10
68 21 0.29
69 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (65 bp):
ATTATATATATATATATATATATATTTTTTTAAATGATATTCAATTGATTTTTTTTACACTATAT
Found at i:1157434 original size:2 final size:2
Alignment explanation
Indices: 1157427--1157452 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1157417 TATTTTACTC
1157427 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1157453 TAATATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1157469 original size:4 final size:4
Alignment explanation
Indices: 1157456--1157539 Score: 55
Period size: 4 Copynumber: 20.2 Consensus size: 4
1157446 TATATATTAA
*
1157456 TATT TCATT TATT TATT TATT TATT T-TT CCT-TT TATTT TATT TTTT
1 TATT T-ATT TATT TATT TATT TATT TATT --TATT TA-TT TATT TATT
* * * * *
1157502 TACT TATT TTTAT TCTT TATT TTTT TATT TATT CATT T
1 TATT TATT TAT-T TATT TATT TATT TATT TATT TATT T
1157540 TTTCCCTCTA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
3 3 0.05
4 46 0.73
5 14 0.22
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:1157495 original size:29 final size:30
Alignment explanation
Indices: 1157463--1157541 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
1157453 TAATATTTCA
*
1157463 TTTATTTATTTATTTATTTTTCCT-TTTAT
1 TTTATTTATTTATTTATTTTTACTCTTTAT
* * *
1157492 TTTATTTTTTTACTTATTTTTATTCTTTAT
1 TTTATTTATTTATTTATTTTTACTCTTTAT
*
1157522 TTT-TTTATTTATTCATTTTT
1 TTTATTTATTTATTTATTTTT
1157542 TCCCTCTAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 34 0.81
30 8 0.19
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (30 bp):
TTTATTTATTTATTTATTTTTACTCTTTAT
Found at i:1159323 original size:2 final size:2
Alignment explanation
Indices: 1159318--1159357 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1159308 TGAAAAAAGA
1159318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1159358 TTACGTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1172460 original size:29 final size:29
Alignment explanation
Indices: 1172428--1172490 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
1172418 ACCATACCAA
*
1172428 AAATGATAAATAACCCTCAAGTAGACAGC
1 AAATGATAAATAACCCACAAGTAGACAGC
** *
1172457 AAATGATAGTTAACCCACAAGTAGGCAGC
1 AAATGATAAATAACCCACAAGTAGACAGC
*
1172486 TAATG
1 AAATG
1172491 CCAGCAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (29 bp):
AAATGATAAATAACCCACAAGTAGACAGC
Found at i:1181237 original size:35 final size:36
Alignment explanation
Indices: 1181197--1181312 Score: 164
Period size: 35 Copynumber: 3.2 Consensus size: 36
1181187 CCAACTTTGA
1181197 AAAAATGATTTTCAAAGTTTGGTAAATGTTTCCTTG
1 AAAAATGATTTTCAAAGTTTGGTAAATGTTTCCTTG
* *
1181233 AAAATTG-TTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGATTTTCAAAGTTTGGTAAATGTTTCCTTG
* * *
1181268 AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTTG
1 AAAAAT-GATTTTCAAAGTTTGGTAAATGTTTCCTTG
1181304 AAAAATGAT
1 AAAAATGAT
1181313 AATGGGATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
35 34 0.47
36 16 0.22
37 22 0.31
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (36 bp):
AAAAATGATTTTCAAAGTTTGGTAAATGTTTCCTTG
Found at i:1185825 original size:21 final size:21
Alignment explanation
Indices: 1185801--1185861 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
1185791 AACTTTTAAA
1185801 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
* *
1185822 AAAT-G-TTTC----CTT-GA
1 AAATGGTTTTCAAAGTTTGGT
1185836 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
1185857 AAATG
1 AAATG
1185862 TTTCTTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 5 0.17
15 3 0.10
16 4 0.14
19 4 0.14
20 3 0.10
21 10 0.34
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:1185892 original size:37 final size:36
Alignment explanation
Indices: 1185799--1185912 Score: 169
Period size: 35 Copynumber: 3.2 Consensus size: 36
1185789 CCAACTTTTA
1185799 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCCTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCCTTG
*
1185835 -AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCCTTG
* * *
1185870 AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTTG
1 AAAAAT-GGTTTTCAAAGTTTGGTAAATGTTTCCTTG
1185906 AAAAATG
1 AAAAATG
1185913 ATAATGGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
35 35 0.49
36 14 0.19
37 23 0.32
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.42
Consensus pattern (36 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCCTTG
Found at i:1196731 original size:25 final size:25
Alignment explanation
Indices: 1196702--1196758 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
1196692 AGGCACTCTC
* * *
1196702 GAGTGCAATTTTACGAGGTATTTTT
1 GAGTGCAAATTTACAAGGCATTTTT
*
1196727 TAGTGCAAATTTACAAGGCATTTTT
1 GAGTGCAAATTTACAAGGCATTTTT
1196752 GAGTGCA
1 GAGTGCA
1196759 TATAGTGCGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.39
Consensus pattern (25 bp):
GAGTGCAAATTTACAAGGCATTTTT
Found at i:1197370 original size:20 final size:21
Alignment explanation
Indices: 1197345--1197383 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1197335 GGAAAAGTAC
1197345 AATATTAAATTAT-GTTTTTA
1 AATATTAAATTATAGTTTTTA
*
1197365 AATATTACATTATAGTTTT
1 AATATTAAATTATAGTTTT
1197384 ATGTGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (21 bp):
AATATTAAATTATAGTTTTTA
Found at i:1198018 original size:19 final size:19
Alignment explanation
Indices: 1197996--1198032 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
1197986 AAGTTAAAAG
1197996 AAAAATAAATAAATAATAT
1 AAAAATAAATAAATAATAT
1198015 AAAAATAAATAAATAATA
1 AAAAATAAATAAATAATA
1198033 AGAAACATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATAAATAAATAATAT
Found at i:1198844 original size:3 final size:3
Alignment explanation
Indices: 1198787--1198826 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
1198777 CCCGAACATA
1198787 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1198827 GTAGTTTGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:1200031 original size:24 final size:24
Alignment explanation
Indices: 1199999--1200054 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
1199989 ACCGTTGCCC
1199999 GTGGTTTTTACCCTAAATATTTTA
1 GTGGTTTTTACCCTAAATATTTTA
1200023 GTGGTTTTTACCCTAAATATTTTA
1 GTGGTTTTTACCCTAAATATTTTA
*
1200047 GGGGTTTT
1 GTGGTTTT
1200055 CCACGTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.50
Consensus pattern (24 bp):
GTGGTTTTTACCCTAAATATTTTA
Found at i:1206119 original size:21 final size:22
Alignment explanation
Indices: 1206081--1206121 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1206071 TACTATGTAT
**
1206081 TATTTTAAAAATTTAAAATTAG
1 TATTTTAAAAATAGAAAATTAG
1206103 TATTTTAAAAA-AGAAAATT
1 TATTTTAAAAATAGAAAATT
1206122 TGAGAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (22 bp):
TATTTTAAAAATAGAAAATTAG
Found at i:1222890 original size:16 final size:16
Alignment explanation
Indices: 1222863--1222905 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
1222853 GTTTATTTTA
1222863 AAATAATT-AAATATT
1 AAATAATTCAAATATT
1222878 AAATAATTCAAATATT
1 AAATAATTCAAATATT
* *
1222894 GAATGATTCAAA
1 AAATAATTCAAA
1222906 AATTTTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (16 bp):
AAATAATTCAAATATT
Found at i:1229083 original size:35 final size:35
Alignment explanation
Indices: 1229044--1229155 Score: 215
Period size: 35 Copynumber: 3.2 Consensus size: 35
1229034 CATGCGCCTC
*
1229044 GCGCCTCAAGGCTCTAGGACACTTTGCGCCTCGAT
1 GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
1229079 GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
1 GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
1229114 GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
1 GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
1229149 GCGCCTC
1 GCGCCTC
1229156 GATGCGCCTC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 76 1.00
ACGTcount: A:0.16, C:0.38, G:0.26, T:0.21
Consensus pattern (35 bp):
GCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGAT
Found at i:1229152 original size:45 final size:45
Alignment explanation
Indices: 1229103--1229195 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
1229093 CAGGACACTT
1229103 TGCGCCTCGATGCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGA
1 TGCGCCTCGATGCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGA
*
1229148 TGCGCCTCGATGCGCCTCAAGGCTCCAGGACACTTTGCGTCTCGA
1 TGCGCCTCGATGCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGA
1229193 TGC
1 TGC
1229196 ACCTTGAGCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.22
Consensus pattern (45 bp):
TGCGCCTCGATGCGCCTCAAGGCTCCAGGACACTTTGCGCCTCGA
Found at i:1229153 original size:10 final size:10
Alignment explanation
Indices: 1229138--1229165 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
1229128 CAGGACACTT
1229138 TGCGCCTCGA
1 TGCGCCTCGA
1229148 TGCGCCTCGA
1 TGCGCCTCGA
1229158 TGCGCCTC
1 TGCGCCTC
1229166 AAGGCTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.07, C:0.43, G:0.29, T:0.21
Consensus pattern (10 bp):
TGCGCCTCGA
Found at i:1235143 original size:21 final size:21
Alignment explanation
Indices: 1235119--1235171 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
1235109 ACACTTAGGG
1235119 AACCGATTCCCTATGAGAGGA
1 AACCGATTCCCTATGAGAGGA
*
1235140 AACCGATTCCCTATGAGAGGG
1 AACCGATTCCCTATGAGAGGA
*
1235161 TACCGATTCCC
1 AACCGATTCCC
1235172 CCACGCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (21 bp):
AACCGATTCCCTATGAGAGGA
Found at i:1235389 original size:13 final size:13
Alignment explanation
Indices: 1235368--1235422 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
1235358 AAGTTCGATA
*
1235368 AATTCAAATACTT
1 AATTGAAATACTT
1235381 AATTGAAATACTT
1 AATTGAAATACTT
* *
1235394 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
1235408 AATTGAAATACTT
1 AATTGAAATACTT
1235421 AA
1 AA
1235423 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:1235468 original size:34 final size:33
Alignment explanation
Indices: 1235408--1235507 Score: 157
Period size: 34 Copynumber: 3.0 Consensus size: 33
1235398 AACTCAACAT
* * *
1235408 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1235441 AATTCAAATACTTAAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTT-AAAAACTTCCAAGTTCGATA
1235475 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1235507 A
1 A
1235508 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
32 12 0.19
33 20 0.32
34 31 0.49
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:1235526 original size:21 final size:21
Alignment explanation
Indices: 1235502--1235541 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1235492 ACTTCAAGTT
1235502 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
1235523 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
1235542 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:1245501 original size:21 final size:21
Alignment explanation
Indices: 1245477--1245572 Score: 79
Period size: 20 Copynumber: 4.7 Consensus size: 21
1245467 CGATTTTCCC
*
1245477 AATTCGCAATGCGAATAAGTA
1 AATTCGCAATGCGAATAAGGA
* * **
1245498 AATT-GCAACGCAAATTGGGA
1 AATTCGCAATGCGAATAAGGA
* *
1245518 AAATCGCAATGCGAATAAGTA
1 AATTCGCAATGCGAATAAGGA
* **
1245539 AATT-GCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGGA
*
1245559 AAATCGCAATGCGA
1 AATTCGCAATGCGA
1245573 TACTGACTAT
Statistics
Matches: 55, Mismatches: 18, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
20 29 0.53
21 26 0.47
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.20
Consensus pattern (21 bp):
AATTCGCAATGCGAATAAGGA
Found at i:1245525 original size:41 final size:41
Alignment explanation
Indices: 1245480--1245572 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
1245470 TTTTCCCAAT
1245480 TCGCAATGCGAATAAGTAAATTGCAACGCAAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATTGCAACGCAAATTGGGAAAA
*
1245521 TCGCAATGCGAATAAGTAAATTGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATTGCAACGCAAATTGGGAAAA
1245562 TCGCAATGCGA
1 TCGCAATGCGA
1245573 TACTGACTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATTGCAACGCAAATTGGGAAAA
Found at i:1245586 original size:20 final size:20
Alignment explanation
Indices: 1245561--1245655 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
1245551 AATTGGGAAA
*
1245561 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
1245581 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
1245602 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
1245622 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
1245642 TTCGCAACGCGATA
1 ATCGCAACGCGATA
1245656 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:1245603 original size:41 final size:41
Alignment explanation
Indices: 1245558--1245635 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
1245548 GCGAATTGGG
* * *
1245558 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
* *
1245599 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATA
1245636 CTGACTTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
Found at i:1245871 original size:22 final size:22
Alignment explanation
Indices: 1245843--1245886 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1245833 CACTCTCTCA
1245843 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
1245865 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
1245887 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:1246175 original size:20 final size:20
Alignment explanation
Indices: 1246150--1246187 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1246140 CGATTCTCTC
1246150 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
1246170 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
1246188 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:1247530 original size:18 final size:18
Alignment explanation
Indices: 1247509--1247553 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
1247499 TCCACTTCGG
*
1247509 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
1247527 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
1247545 GAGCCATCA
1 GAGCCATCA
1247554 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1248080 original size:19 final size:20
Alignment explanation
Indices: 1248026--1248081 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
1248016 TAGTTTACTT
* *
1248026 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1248046 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
*
1248066 TCGCAATGC-GAAATGA
1 TCGCAACGCGGAAATGA
1248082 AAATCGTAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 6 0.19
20 25 0.81
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1248125 original size:32 final size:33
Alignment explanation
Indices: 1248065--1248155 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
1248055 GGAAATGGCT
* * *
1248065 ATCGCAATGCGAAATGAAAATCGTAACGATAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1248098 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1248130 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
1248156 TGCGATTTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.56
33 24 0.44
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:1248133 original size:14 final size:14
Alignment explanation
Indices: 1248081--1248138 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
1248071 ATGCGAAATG
* *
1248081 AAAATCGTAACGAT
1 AAAATCGCAACGAA
1248095 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAA
*
1248111 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAA
1248127 AAAATCGCAACG
1 AAAATCGCAACG
1248139 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAA
Found at i:1248191 original size:14 final size:14
Alignment explanation
Indices: 1248172--1248229 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
1248162 TTGTGTTTCG
1248172 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
1248186 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
1248202 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
1248218 CGTTGCGATTTT
1 CGTTGCGATTTT
1248230 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1248206 original size:32 final size:33
Alignment explanation
Indices: 1248167--1248245 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
1248157 GCGATTTGTG
1248167 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1248199 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
1248232 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
1248246 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:1248244 original size:19 final size:19
Alignment explanation
Indices: 1248186--1248303 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 19
1248176 GCGATTTTGT
1248186 CGTTGCGA-TTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
1248204 CGTTGCGA-TTT--TGT--
1 CGTTGCGATTTTCATTTCG
1248218 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
1248237 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
**
1248257 CGTTGCGATAGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
1248276 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
1248296 TGTTGCGA
1 CGTTGCGA
1248304 AAGTAAACTA
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 2 0.02
17 2 0.02
18 11 0.14
19 26 0.32
20 29 0.36
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:1250914 original size:24 final size:24
Alignment explanation
Indices: 1250855--1250908 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
1250845 GTATTCGAAA
* * *
1250855 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGTTCAATACACGGAC
*
1250879 TTTGATATTGTTCAATACACGGAT
1 TTTGATATTGTTCAATACACGGAC
1250903 TTTGAT
1 TTTGAT
1250909 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGTTCAATACACGGAC
Found at i:1251100 original size:12 final size:12
Alignment explanation
Indices: 1251083--1251107 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1251073 ATATAATCCT
1251083 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1251095 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1251107 G
1 G
1251108 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:1253442 original size:33 final size:33
Alignment explanation
Indices: 1253400--1253526 Score: 193
Period size: 33 Copynumber: 3.8 Consensus size: 33
1253390 GGAAATTACT
1253400 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
1253433 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
1253465 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
1253499 ATCGCAACGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
1253527 CGAATTTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 82 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1253511 original size:66 final size:66
Alignment explanation
Indices: 1253401--1253533 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
1253391 GAAATTACTA
* *
1253401 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGCGAAT
1253466 T
66 T
*
1253467 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAACGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGCGAAT
1253532 T
66 T
1253533 T
1 T
1253534 AATTTCGCGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:1253541 original size:19 final size:19
Alignment explanation
Indices: 1253380--1253530 Score: 89
Period size: 19 Copynumber: 8.7 Consensus size: 19
1253370 CTTAATGTCC
* **
1253380 ATCGCAACGCGGAAATTACT
1 ATCGCAACGC-GAAATGAAA
*
1253400 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
1253419 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
*
1253433 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
1253452 ATCGCAACGC----T-AAT
1 ATCGCAACGCGAAATGAAA
* *
1253466 TTCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
**
1253485 ATCGCAA--CG--A-GGGA
1 ATCGCAACGCGAAATGAAA
1253499 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
1253518 ATCGCAACGCGAA
1 ATCGCAACGCGAA
1253531 TTTAATTTCG
Statistics
Matches: 100, Mismatches: 16, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
14 29 0.29
15 3 0.03
16 4 0.04
17 4 0.04
18 3 0.03
19 48 0.48
20 9 0.09
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:1253548 original size:19 final size:20
Alignment explanation
Indices: 1253526--1253568 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1253516 AAATCGCAAC
1253526 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
1253545 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
1253565 GCGA
1 GCGA
1253569 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:1253553 original size:14 final size:14
Alignment explanation
Indices: 1253554--1253587 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1253544 TGCGATTTTC
1253554 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
1253568 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
1253582 ATTTTC
1 ATTTTC
1253588 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:1253707 original size:14 final size:14
Alignment explanation
Indices: 1253688--1253724 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1253678 CATCAATTAA
1253688 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
1253702 ACAAATCACCTTTT
1 ACAAATCAACTTTT
1253716 ACAAATCAA
1 ACAAATCAA
1253725 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:1255148 original size:21 final size:21
Alignment explanation
Indices: 1255082--1255148 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
1255072 GTGAATCGGG
*
1255082 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
1255102 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
1255124 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
1255145 CTCT
1 CTCT
1255149 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:1257287 original size:33 final size:33
Alignment explanation
Indices: 1257230--1257328 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
1257220 ACGAGATAAT
*
1257230 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
1257264 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
1257297 GACAATCGCAACGCGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
1257329 GCGAAATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.39, C:0.26, G:0.23, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:1257322 original size:19 final size:19
Alignment explanation
Indices: 1257205--1257370 Score: 136
Period size: 20 Copynumber: 9.1 Consensus size: 19
1257195 TCTTTTGGTT
*
1257205 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
1257224 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
1257244 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
1257262 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
1257278 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
1257296 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
1257311 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
1257331 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
1257350 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
1257369 GA
1 GA
1257371 TTTTGGTTTC
Statistics
Matches: 119, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
14 19 0.16
15 3 0.03
16 2 0.02
17 1 0.01
18 4 0.03
19 43 0.36
20 45 0.38
21 2 0.02
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:1257399 original size:19 final size:19
Alignment explanation
Indices: 1257366--1257432 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
1257356 AAAATCGCAA
**
1257366 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
1257385 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
**
1257404 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
1257424 TGCGATTTT
1 TGCGATTTT
1257433 CATTCTCGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 29 0.71
20 12 0.29
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:1258020 original size:21 final size:19
Alignment explanation
Indices: 1257996--1258124 Score: 80
Period size: 20 Copynumber: 6.3 Consensus size: 19
1257986 AAGTATCTTG
1257996 TTGCGATTTTTTATTATCGCA
1 TTGCGATTTTTTA-T-TCGCA
** *
1258017 TTGCGA-TAGTCAGTATCGCA
1 TTGCGATTTTTTA-T-TCGCA
* *
1258037 TTGCGATTTTCCTAATTCGCG
1 TTGCGATTTT--TTATTCGCA
*
1258058 TTGCGATTTACTTATTCGCA
1 TTGCGATTT-TTTATTCGCA
* *
1258078 TTGCGATTTTCTCAATTCGCG
1 TTGCGATTTT-T-TATTCGCA
*
1258099 TTACGATTTATTTATTCGCA
1 TTGCGATTT-TTTATTCGCA
1258119 TTGCGA
1 TTGCGA
1258125 ATTGGGAAAA
Statistics
Matches: 83, Mismatches: 18, Indels: 15
0.72 0.16 0.13
Matches are distributed among these distances:
20 44 0.53
21 35 0.42
22 2 0.02
23 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.43
Consensus pattern (19 bp):
TTGCGATTTTTTATTCGCA
Found at i:1258043 original size:20 final size:20
Alignment explanation
Indices: 1257950--1258043 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
1257940 CGCTATGTAA
*
1257950 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
1257970 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
** ** * *
1257990 ATCTTGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
1258011 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
1258031 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
1258044 TTTCCTAATT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 46 0.79
21 12 0.21
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:1258062 original size:41 final size:40
Alignment explanation
Indices: 1257971--1258105 Score: 119
Period size: 41 Copynumber: 3.3 Consensus size: 40
1257961 AAAGTCAGTA
* *** * *
1257971 TCGCGTTGCGAAAGTAAGTATCTTGTTGCGATTTTTTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCTAAT
* *
1258011 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCTAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTT-CTAAT
* **
1258053 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCTCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCT-AAT
*
1258094 TCGCGTTACGAT
1 TCGCGTTGCGAT
1258106 TTATTTATTC
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
40 5 0.06
41 69 0.90
42 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (40 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCTAAT
Found at i:1258076 original size:20 final size:20
Alignment explanation
Indices: 1258032--1258124 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
1258022 ATAGTCAGTA
*
1258032 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGA-TTTACTAAT
* *
1258053 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTAAT
*
1258073 TCGCATTGCGATTTTCTCAAT
1 TCGCATTGCGATTTACT-AAT
* * * *
1258094 TCGCGTTACGATTTATTTAT
1 TCGCATTGCGATTTACTAAT
1258114 TCGCATTGCGA
1 TCGCATTGCGA
1258125 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 33 0.57
21 25 0.43
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (20 bp):
TCGCATTGCGATTTACTAAT
Found at i:1258106 original size:41 final size:41
Alignment explanation
Indices: 1258032--1258124 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 41
1258022 ATAGTCAGTA
*
1258032 TCGCATTGCGATTTTCCTAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCTAATTCGCGTTACGATTTACTTAT
*
1258073 TCGCATTGCGATTTT-CTCAATTCGCGTTACGATTTATTTAT
1 TCGCATTGCGATTTTCCT-AATTCGCGTTACGATTTACTTAT
1258114 TCGCATTGCGA
1 TCGCATTGCGA
1258125 ATTGGGAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 2 0.04
41 47 0.96
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCTAATTCGCGTTACGATTTACTTAT
Found at i:1273106 original size:18 final size:18
Alignment explanation
Indices: 1273073--1273107 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1273063 GGCTTTGGGA
*
1273073 CGTGGACGAGGCCGTGGC
1 CGTGGACGAGGACGTGGC
*
1273091 CGTGGACGTGGACGTGG
1 CGTGGACGAGGACGTGG
1273108 TCGAGGCCGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.23, G:0.51, T:0.14
Consensus pattern (18 bp):
CGTGGACGAGGACGTGGC
Found at i:1273115 original size:24 final size:24
Alignment explanation
Indices: 1273070--1273117 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1273060 CAAGGCTTTG
*
1273070 GGACGTGGACGAGGCCGTGGCCGT
1 GGACGTGGACGAGGCCGAGGCCGT
* *
1273094 GGACGTGGACGTGGTCGAGGCCGT
1 GGACGTGGACGAGGCCGAGGCCGT
1273118 TAAATATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.23, G:0.50, T:0.15
Consensus pattern (24 bp):
GGACGTGGACGAGGCCGAGGCCGT
Found at i:1278752 original size:20 final size:20
Alignment explanation
Indices: 1278729--1278778 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
1278719 CGATATACCA
1278729 GGTAAAATTATGATAAAACC
1 GGTAAAATTATGATAAAACC
*
1278749 GGTAACAA-AATGATAAAACC
1 GGTAA-AATTATGATAAAACC
1278769 GGTAAAATTA
1 GGTAAAATTA
1278779 AAAGTGTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (20 bp):
GGTAAAATTATGATAAAACC
Found at i:1281300 original size:33 final size:33
Alignment explanation
Indices: 1281258--1281323 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1281248 AAATAGATGG
*
1281258 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
1281291 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
1281324 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:1283178 original size:19 final size:19
Alignment explanation
Indices: 1283115--1283177 Score: 110
Period size: 19 Copynumber: 3.4 Consensus size: 19
1283105 AATGTCGAGT
*
1283115 TAATTTTGTATAAGATTTA
1 TAATTTTGTATACGATTTA
1283134 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
1283153 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
1283172 T-ATTTT
1 TAATTTT
1283178 TTTATGTGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
18 5 0.12
19 38 0.88
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATACGATTTA
Found at i:1284285 original size:198 final size:200
Alignment explanation
Indices: 1283260--1284482 Score: 2170
Period size: 200 Copynumber: 6.1 Consensus size: 200
1283250 TTAAGGGTCA
* * *** *
1283260 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-TTTACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1283324 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1283389 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1283454 TAATG
196 TAATG
1283459 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
1283524 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1283589 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1283654 TAATG
196 TAATG
1283659 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
1283724 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1283789 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1283854 TAATG
196 TAATG
1283859 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
1283924 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1283989 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1284054 TAATG
196 TAATG
* *** * * *
1284059 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-TTTACGAGGTGAATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1284123 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1284187 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1284252 TAATG
196 TAATG
*** * *
1284257 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATT-TTTACAAGGTGAATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1284320 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
1284384 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1284449 TAATG
196 TAATG
*
1284454 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
1284483 CTAATTTAAA
Statistics
Matches: 1003, Mismatches: 20, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
197 187 0.19
198 147 0.15
199 77 0.08
200 592 0.59
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (200 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
TAATG
Found at i:1285967 original size:18 final size:18
Alignment explanation
Indices: 1285944--1286005 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
1285934 ATCGGTCGCA
* * *
1285944 GAAGATGAAGCTGACGAT
1 GAAGATGACGATGATGAT
1285962 GAAGATGACGATGATGAT
1 GAAGATGACGATGATGAT
*
1285980 GATGATGACGATGATGAT
1 GAAGATGACGATGATGAT
1285998 GAAGATGA
1 GAAGATGA
1286006 TGATCCAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.39, C:0.06, G:0.34, T:0.21
Consensus pattern (18 bp):
GAAGATGACGATGATGAT
Found at i:1285968 original size:6 final size:6
Alignment explanation
Indices: 1285944--1286005 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
1285934 ATCGGTCGCA
* * * * * *
1285944 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
*
1285992 GATGAT GAAGAT GA
1 GAAGAT GAAGAT GA
1286006 TGATCCAAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.39, C:0.06, G:0.34, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:1285979 original size:3 final size:3
Alignment explanation
Indices: 1285959--1286009 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
1285949 TGAAGCTGAC
* * * *
1285959 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAT GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1286007 GAT
1 GAT
1286010 CCAAACAAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:1286006 original size:12 final size:12
Alignment explanation
Indices: 1285947--1286009 Score: 81
Period size: 12 Copynumber: 5.2 Consensus size: 12
1285937 GGTCGCAGAA
* *
1285947 GATGAAGCTGAC
1 GATGAAGATGAT
*
1285959 GATGAAGATGAC
1 GATGAAGATGAT
*
1285971 GATGATGATGAT
1 GATGAAGATGAT
*
1285983 GATGACGATGAT
1 GATGAAGATGAT
1285995 GATGAAGATGAT
1 GATGAAGATGAT
1286007 GAT
1 GAT
1286010 CCAAACAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (12 bp):
GATGAAGATGAT
Found at i:1287676 original size:184 final size:184
Alignment explanation
Indices: 1287367--1288037 Score: 1290
Period size: 184 Copynumber: 3.7 Consensus size: 184
1287357 CTTTCAACAT
**
1287367 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1287432 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
1287497 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
1287551 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1287616 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1287681 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
1287735 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1287800 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
1287865 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
1287919 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1287984 GGTCTACAACCTATATCGACAC-TTTTAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
1288038 CCATTTAAAA
Statistics
Matches: 482, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
183 32 0.07
184 450 0.93
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:1290619 original size:23 final size:23
Alignment explanation
Indices: 1290588--1290650 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1290578 ATAGGTAAAC
*
1290588 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1290611 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1290634 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
1290651 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1290658 original size:23 final size:23
Alignment explanation
Indices: 1290588--1290660 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
1290578 ATAGGTAAAC
* * **
1290588 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
1290611 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
1290634 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
1290657 ATAT
1 ATAT
1290661 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:1291044 original size:23 final size:22
Alignment explanation
Indices: 1291013--1291074 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
1291003 ATAGGTAAAC
*
1291013 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTA-CCCTT
* *
1291036 ATATAATGTAATAGGTATCGTT
1 ATATAATGTAATAGGTACCCTT
1291058 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
1291075 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 20 0.56
23 16 0.44
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.37
Consensus pattern (22 bp):
ATATAATGTAATAGGTACCCTT
Found at i:1291062 original size:22 final size:22
Alignment explanation
Indices: 1291013--1291084 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
1291003 ATAGGTAAAC
* * *
1291013 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTA-TCGTT
1291036 ATATAATGTAATAGGTATCGTT
1 ATATAATGTAATAGGTATCGTT
*
1291058 ATATAATGTAATAGGTAATGGTT
1 ATATAATGTAATAGGT-ATCGTT
1291081 ATAT
1 ATAT
1291085 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 19 0.43
23 25 0.57
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (22 bp):
ATATAATGTAATAGGTATCGTT
Found at i:1291112 original size:20 final size:20
Alignment explanation
Indices: 1291087--1291125 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1291077 GGTTATATTG
* *
1291087 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
1291107 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
1291126 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:1291471 original size:23 final size:23
Alignment explanation
Indices: 1291440--1291499 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
1291430 ATAGGTAAAC
*
1291440 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1291463 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1291486 ATATAATGTAATAG
1 ATATAATGTAATAG
1291500 TAATGGTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1292090 original size:421 final size:429
Alignment explanation
Indices: 1290490--1294293 Score: 6892
Period size: 423 Copynumber: 9.0 Consensus size: 429
1290480 AATTCGCAGT
1290490 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1290554 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1290619 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
130 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTAT
1290684 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
194 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
1290749 AAGATATTAATTTAGTAATTATA-GCGTCTAATGATTTATTTTTTACGTTACGGTATATA-TATT
259 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
1290812 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
324 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
1290877 AATGAAATTATTAAATC-ATATTGTAGGTGGAAAACATG-A
389 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1290916 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTAT-
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1290980 AAAAGTATGGACACTTTCAATAT-ATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1291044 TAATAGGTATCG-TTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TA
130 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATA
1291107 TAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
195 -AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
1291172 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
259 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
1291237 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
324 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
1291302 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
389 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1291343 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTAT-A
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1291407 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1291472 AATAGGTATCGTTTATATAATGTAATA-GTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTATA
1291536 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1291601 AGATATTAATTTAGTAATTATAGGCGT-TAATGATTTATTTTTTTACGTT-CGGTATATATTATT
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTACGTTACGGTATATATTATT
1291664 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAACAATCAAATAATTTTTTGTGCA
324 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
1291728 AATGAAATTATTAAATCAATATTGTAGGTGG-AAACATGAA
389 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1291768 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1291833 AAAGTATGGACACTTTCAATATAATAGGT-AACATATGATGT-ATA-GTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1291895 AATAGGTATCGTTTATATAATGTAATAGGTAATGG-TATATTGTAAAGTGTCTATCCTTTTATAA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATAA
1291959 AAGTGTCCATACTTTTTTCACTGTGG-AAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
196 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
1292023 GATATTAATTTAGTAA-TATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAT
261 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAT
1292087 TAAATT-AAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
326 TAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
1292151 TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1292190 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCC-TTTT-TA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1292252 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1292317 TAATAGGTATCGTTTATATAATGT-A-AGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT
130 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTAT
1292380 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT-AGGTTATC-TTTGAGTGAGTTTT
194 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
1292443 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTTACGTTACGG--TATATTAT
259 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTACGTTACGGTATATATTAT
1292506 TATTAAATT-AAAATTCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAATTTTTTGTG
323 TATTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAAACAATCAAATAATTTTTTGTG
1292570 CAAATGAAATTATT-AATCAATATTGTAGGTGGAAAACATGAA
387 CAAATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1292612 ACACTGTT--AAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCC-TTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1292674 AAAAGTATGGACACTTTCAATATAATAGGT-AAC--ATGATGTAATAGGTAGCCC-T-TAT-A--
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1292731 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TA
130 TAATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATA
1292795 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1292859 AGATATTAATTTAGTAATTATA-GCGTCTAATGA-TTATTTTTTACGTTACGGTATATATTATTA
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
1292922 TTAAATTAAAAATTCTAAATAATATTTTAT--AA-ATCAAAACAATCAAATAATTTTTTGTGCAA
325 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1292984 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
390 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1293024 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCC-TTTTAT-A
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1293087 AAA-TATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1293151 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TAT
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATA-
1293215 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1293280 AGATATTAATTTAGTAATTATAGGCGTCTAATGA-TTA-TTTTTACGTTACGG--TATA-TATTA
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
1293340 TTAAATTAAAAATTCTAAAT-ATA-TTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
325 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1293403 ATG-AATTATTAAATCAATATTGTAGGTGG-AAACATGAA
390 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1293441 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1293506 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1293571 AATAGGTATCGTTTATAT-ATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTATA
1293635 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTTAAGGTTATCTTTTGAGTGAGTTTT
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAA-TTTAAGGTTATCTTTTGAGTGAGTTTT
1293700 AAGATATTAATTTAGTAATTATAGGCGTCTAATGA--T-TTTTTTACGTTACGGTATATATTATT
259 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
1293762 ATT-AATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
324 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
1293826 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
389 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1293867 ACACTGTT-AAAAAA-TGAAACA-AAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1293929 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1293994 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TAT
131 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATA-
1294058 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAG-TTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1294122 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
1294187 TTAAATTAAAAATTCTAAATAATA-TTTAT-AAATATCAAAACAATC-AA-AA-TTTTTGTGCAA
325 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1294247 ATGAAATTATT-AATCAATATTGTAGGTGG-AAACATG-A
390 ATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1294284 A-ACTGTTAAA
1 ACACTGTTAAA
1294294 GTATCGATCC
Statistics
Matches: 3306, Mismatches: 0, Indels: 153
0.96 0.00 0.04
Matches are distributed among these distances:
411 63 0.02
412 61 0.02
413 27 0.01
414 143 0.04
415 73 0.02
416 46 0.01
417 76 0.02
418 67 0.02
419 180 0.05
420 288 0.09
421 407 0.12
422 303 0.09
423 490 0.15
424 240 0.07
425 276 0.08
426 201 0.06
427 241 0.07
428 122 0.04
429 2 0.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (429 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATAA
AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAT
TAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:1292317 original size:23 final size:23
Alignment explanation
Indices: 1292286--1292342 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
1292276 ATAGGTAAAC
*
1292286 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1292309 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1292332 ATATAATGTAA
1 ATATAATGTAA
1292343 GGTAATGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1292811 original size:18 final size:19
Alignment explanation
Indices: 1292776--1292812 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1292766 GTTATATTGT
* *
1292776 AAAGTGTCTATCCTTTTTA
1 AAAGTGTCCATACTTTTTA
1292795 AAAGTGTCCATACTTTTT
1 AAAGTGTCCATACTTTTT
1292813 TCACTGTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (19 bp):
AAAGTGTCCATACTTTTTA
Found at i:1292955 original size:28 final size:29
Alignment explanation
Indices: 1292913--1292977 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 29
1292903 GTTACGGTAT
* *
1292913 ATATTATTATTAAATTAAAA-ATTCTAAATA
1 ATATT-TTATTAAATCAAAACAATC-AAATA
1292943 ATATTTTA-TAAATCAAAACAATCAAATA
1 ATATTTTATTAAATCAAAACAATCAAATA
*
1292971 ATTTTTT
1 ATATTTT
1292978 GTGCAAATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 20 0.65
29 6 0.19
30 5 0.16
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTTATTAAATCAAAACAATCAAATA
Found at i:1293150 original size:23 final size:23
Alignment explanation
Indices: 1293119--1293181 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1293109 ATAGGTAAAC
*
1293119 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1293142 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1293165 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
1293182 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1293189 original size:23 final size:23
Alignment explanation
Indices: 1293119--1293191 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
1293109 ATAGGTAAAC
* * **
1293119 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
1293142 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
1293165 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
1293188 ATAT
1 ATAT
1293192 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:1293219 original size:20 final size:20
Alignment explanation
Indices: 1293194--1293232 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1293184 GGTTATATTG
* *
1293194 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
1293214 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
1293233 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:1293595 original size:22 final size:23
Alignment explanation
Indices: 1293539--1293600 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
1293529 ATAGGTAAAC
*
1293539 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1293562 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1293585 ATAT-ATGTAATAGGTA
1 ATATAATGTAATAGGTA
1293601 ATGGTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 12 0.34
23 23 0.66
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1293608 original size:22 final size:22
Alignment explanation
Indices: 1293539--1293615 Score: 77
Period size: 23 Copynumber: 3.5 Consensus size: 22
1293529 ATAGGTAAAC
* **
1293539 ATATGATGTAATAGGTAGCCCTT
1 ATAT-ATGTAATAGGTATCGGTT
*
1293562 ATATAATGTAATAGGTATCGTTT
1 ATAT-ATGTAATAGGTATCGGTT
1293585 ATATATGTAATAGGTAAT-GGTT
1 ATATATGTAATAGGT-ATCGGTT
1293607 ATAT-TGTAA
1 ATATATGTAA
1293616 AGTGTCTATC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 5 0.10
22 18 0.38
23 25 0.52
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.40
Consensus pattern (22 bp):
ATATATGTAATAGGTATCGGTT
Found at i:1293953 original size:843 final size:855
Alignment explanation
Indices: 1290490--1294293 Score: 6926
Period size: 843 Copynumber: 4.5 Consensus size: 855
1290480 AATTCGCAGT
1290490 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATAA
1290555 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
65 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1290620 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
130 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
1290685 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1290750 AGATATTAATTTAGTAATTATA-GCGTCTAATGATTTATTTTTTACGTTACGG-TATATATATTA
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGATATAT-TATTA
1290813 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
324 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1290878 ATGAAATTATTAAATC-ATATTGTAGGTGGAAAACATG-AACACTGTTAAAAAAATTGAAACATA
389 ATGAAATTATTAAATCAATATTGTAGGTGG-AAACATGAAACACTGTTAAAAAAATTGAAACATA
1290941 AATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAGTATGGACACTTTCAATAT-A
453 AATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
1291004 TAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCG-TTATATAATGTA
518 TAGGT-AACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTA
1291068 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TATAAAGTGTCCATACTTTTTTCACTG
582 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATA-AAAGTGTCCATACTTTTTTCACTG
1291132 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
646 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
1291197 CGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
711 CGTCTAATGA-TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATA
1291262 TTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
775 TTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGT
1291327 AGGTGGAAAACATGAA
840 AGGTGGAAAACATGAA
1291343 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTAT-A
1 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1291407 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
65 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1291472 AATAGGTATCGTTTATATAATGTAATA-GTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
130 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
1291536 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1291601 AGATATTAATTTAGTAATTATAGGCGT-TAATGATTTATTTTTTTACGTT-CGGTATATATTATT
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTACGTTACGG-ATATATTATT
1291664 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAACAATCAAATAATTTTTTGTGCA
323 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
1291728 AATGAAATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAAAAAATTGAAACATA
388 AATGAAATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAAAAAATTGAAACATA
1291793 AATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
453 AATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
1291857 TAGGTAACATATGATGT-ATA-GTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
518 TAGGTAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
1291920 TAGGTAATGG-TATATTGTAAAGTGTCTATCCTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
583 TAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
1291984 G-AAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA-TATAGGCG
648 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
1292047 TCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT-AAAATTCTAAATAATATT
713 TCTAATGA-TTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
1292111 TTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
777 TTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
1292176 GTGGAAAACATGAA
842 GTGGAAAACATGAA
1292190 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCC-TTTT-TAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATAA
1292253 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
65 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1292318 AATAGGTATCGTTTATATAATGT-A-AGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
130 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
1292381 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTT-AGGTTATC-TTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1292444 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTTACGTTACGG-TATATTATTA
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTTACGTTACGGATATATTATTA
1292508 TTAAATT-AAAATTCTAAATAATATTTTATAAAATATCAAAAACAATCAAATAATTTTTTGTGCA
324 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAAACAATCAAATAATTTTTTGTGCA
1292572 AATGAAATTATT-AATCAATATTGTAGGTGGAAAACATGAAACACTGTT--AAAAATTGAAACAT
388 AATGAAATTATTAAATCAATATTGTAGGTGG-AAACATGAAACACTGTTAAAAAAATTGAAACAT
1292634 AAATTACATAAGTTTTAAAAAAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATA
452 AAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
1292698 ATAGGTAAC--ATGATGTAATAGGTAGCCC-T-TAT-A--TAATAGGTATCGTTTATATAATGTA
517 ATAGGTAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTA
1292756 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTT-TAAAAGTGTCCATACTTTTTTCACTGT
582 ATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTATAAAAGTGTCCATACTTTTTTCACTGT
1292820 GGAAAACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA-GC
647 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
1292883 GTCTAATGATTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
712 GTCTAATGATTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
1292948 TTAT--AA-ATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
777 TTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
1293010 GTGGAAAACATGAA
842 GTGGAAAACATGAA
1293024 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCC-TTTTAT-A
1 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAA
1293087 AAA-TATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
65 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
1293151 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT-
130 AATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATA
1293215 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
195 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
1293280 AGATATTAATTTAGTAATTATAGGCGTCTAATGA-TTA-TTTTTACGTTACGG-TATA-TATTAT
260 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGATATATTATTAT
1293341 TAAATTAAAAATTCTAAAT-ATA-TTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
325 TAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
1293404 TG-AATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAAAAAATTGAAACATAAA
390 TGAAATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAAAAAATTGAAACATAAA
1293468 TTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
455 TTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
1293532 GGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATAT-ATGTAAT
520 GGT-AACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
1293596 AGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
584 AGGTAATGGTTATATTGTAAAGTGTCTATCC-TTTTATAAAAGTGTCCATACTTTTTTCACTGTG
1293661 GAAAACATTAATTTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
648 GAAAACATTAA-TTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
1293726 GTCTAATGA-T-TTTTTTACGTTACGGTATATATTATTATT-AATTAAAAATTCTAAATAATATT
712 GTCTAATGATTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATT
1293788 TTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
777 TTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAG
1293853 GTGGAAAACATGAA
842 GTGGAAAACATGAA
1293867 ACACTGTTAAAAAA-TGAAACA-AAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAAA
1293930 AAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTA
66 AAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTA
1293995 ATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTAT-A
131 ATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAA
1294059 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAG-TTTAA
196 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
1294123 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTAT
261 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGG-ATATATTATTAT
1294188 TAAATTAAAAATTCTAAATAATA-TTTAT-AAATATCAAAACAATC-AA-AA-TTTTTGTGCAAA
325 TAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
1294248 TGAAATTATT-AATCAATATTGTAGGTGGAAACATG-AA-ACTGTTAAA
390 TGAAATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAA
1294294 GTATCGATCC
Statistics
Matches: 2888, Mismatches: 0, Indels: 137
0.95 0.00 0.05
Matches are distributed among these distances:
829 24 0.01
830 64 0.02
831 80 0.03
832 18 0.01
833 114 0.04
834 162 0.06
835 84 0.03
836 89 0.03
837 131 0.05
838 88 0.03
839 24 0.01
840 108 0.04
841 58 0.02
842 204 0.07
843 372 0.13
844 138 0.05
845 91 0.03
846 130 0.05
847 162 0.06
848 62 0.02
849 54 0.02
850 81 0.03
851 237 0.08
852 240 0.08
853 42 0.01
854 31 0.01
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (855 bp):
ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAGTATCGATCCTTTTTATAAA
AAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGTA
ATAGGTATCGTTTATATAATGTAATAGGTAATGGTTATATTGTAAAGTGTCTATCCTTTTTATAA
AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGATATATTATTATT
AAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAAT
GAAATTATTAAATCAATATTGTAGGTGGAAACATGAAACACTGTTAAAAAAATTGAAACATAAAT
TACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAG
GTAACATATGATGTAATAGGTAGCCCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAG
GTAATGGTTATATTGTAAAGTGTCTATCCTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAA
AACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
AATGATTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAATTCTAAATAATATTTTAT
AAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATCAATATTGTAGGTGG
AAAACATGAA
Found at i:1293993 original size:23 final size:23
Alignment explanation
Indices: 1293962--1294024 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1293952 ATAGGTAAAC
*
1293962 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1293985 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1294008 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
1294025 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1294032 original size:23 final size:23
Alignment explanation
Indices: 1293962--1294034 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
1293952 ATAGGTAAAC
* * **
1293962 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
1293985 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
1294008 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
1294031 ATAT
1 ATAT
1294035 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:1294062 original size:20 final size:20
Alignment explanation
Indices: 1294037--1294075 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1294027 GGTTATATTG
* *
1294037 TAAAGTGTCTATCCTTTTTA
1 TAAAGTGTCCATACTTTTTA
1294057 TAAAGTGTCCATACTTTTT
1 TAAAGTGTCCATACTTTTT
1294076 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (20 bp):
TAAAGTGTCCATACTTTTTA
Found at i:1294744 original size:23 final size:23
Alignment explanation
Indices: 1294718--1294765 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1294708 ATAAAGTACA
*
1294718 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
1294741 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
1294764 AT
1 AT
1294766 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:1295165 original size:21 final size:20
Alignment explanation
Indices: 1295135--1295188 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
1295125 GATAGACACT
*
1295135 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
1295156 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
1295179 TTACATTATA
1 TTACATTATA
1295189 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:1295176 original size:23 final size:23
Alignment explanation
Indices: 1295150--1295212 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1295140 ATATAACCAT
1295150 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1295173 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1295196 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1295213 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1296031 original size:20 final size:20
Alignment explanation
Indices: 1295982--1296027 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
1295972 GATAGACACT
1295982 TTACAATATAACCATTACCTA
1 TTAC-ATATAACCATTACCTA
*
1296003 TTACATATAACGA-TACCTA
1 TTACATATAACCATTACCTA
1296022 TTACAT
1 TTACAT
1296028 TATATAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 12 0.50
20 8 0.33
21 4 0.17
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (20 bp):
TTACATATAACCATTACCTA
Found at i:1296420 original size:21 final size:20
Alignment explanation
Indices: 1296395--1296448 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
1296385 GATAGACACT
1296395 TTACAATATAACCATTACCTA
1 TTACAATATAACCA-TACCTA
*
1296416 TTACATTATATAAACGATACCTA
1 TTACA--ATAT-AACCATACCTA
*
1296439 TTACATTATA
1 TTACAATATA
1296449 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
23 15 0.54
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACAATATAACCATACCTA
Found at i:1296436 original size:23 final size:23
Alignment explanation
Indices: 1296410--1296472 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1296400 ATATAACCAT
1296410 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1296433 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1296456 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1296473 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1296839 original size:21 final size:20
Alignment explanation
Indices: 1296814--1296867 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
1296804 GATAGACACT
1296814 TTACAATATAACCATTACCTA
1 TTACAATATAACCA-TACCTA
*
1296835 TTACATTATATAAACGATACCTA
1 TTACA--ATAT-AACCATACCTA
*
1296858 TTACATTATA
1 TTACAATATA
1296868 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
23 15 0.54
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACAATATAACCATACCTA
Found at i:1296855 original size:23 final size:23
Alignment explanation
Indices: 1296829--1296891 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1296819 ATATAACCAT
1296829 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1296852 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1296875 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1296892 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1297268 original size:23 final size:22
Alignment explanation
Indices: 1297242--1297293 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
1297232 GACACTTACA
1297242 ATATAACCATTACCTATTACATT
1 ATATAACCA-TACCTATTACATT
*
1297265 ATATAAACGATACCTATTACATT
1 ATAT-AACCATACCTATTACATT
1297288 ATATAA
1 ATATAA
1297294 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 2 0.07
23 21 0.78
24 4 0.15
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (22 bp):
ATATAACCATACCTATTACATT
Found at i:1297301 original size:23 final size:23
Alignment explanation
Indices: 1297252--1297314 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1297242 ATATAACCAT
1297252 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1297275 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1297298 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1297315 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1297726 original size:23 final size:23
Alignment explanation
Indices: 1297673--1297733 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
1297663 AATATACCAT
1297673 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1297696 TACC--TTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1297717 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1297734 GTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.56
23 14 0.44
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.36
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1298109 original size:21 final size:20
Alignment explanation
Indices: 1298079--1298132 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
1298069 GATAGACACT
*
1298079 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
1298100 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
1298123 TTACATTATA
1 TTACATTATA
1298133 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:1298120 original size:23 final size:23
Alignment explanation
Indices: 1298094--1298156 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
1298084 ATATAACCAT
1298094 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
1298117 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
1298140 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1298157 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1298395 original size:424 final size:430
Alignment explanation
Indices: 1294876--1298676 Score: 6921
Period size: 423 Copynumber: 9.0 Consensus size: 430
1294866 GGATCGCTAC
1294876 TTTAACAGTGTTTTCATG-TTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATT
1 TTTAACAGTG-TTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATT
1294940 A-TTGATTGTTTTGATA-TTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
65 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
1295003 GTAACGTAAAAAATAAA-CATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
1295067 AAGATAACCTTAAATT-ATG-TTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
1295130 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
1295195 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCC-TACTTTTTATAAAAAGGATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
1295259 GATACTTTTTTT-AAACTTATGTAATTTATGTTTCAATTTT
390 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1295299 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATT
1295364 ATTTGATTGTTTTGATA-TTTATAAAATATTATTTAGAATTTTTAATTTAAT-ATAATATATACC
65 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
1295427 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
1295492 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
1295557 AC-CTTTACAATATAACCATTACCTATTACATTATATAAACG-TACCTATTACATTATAT-AGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
1295619 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAA-GATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
1295683 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
390 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1295724 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAAT-A-TTCATTTGCACAAAAATTA
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
1295787 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
66 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
1295852 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC-AA
131 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
1295916 AGATAACCTT-AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT--AAAGGATAGA
196 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
1295978 CACTTTACAATATAACCATTACCTATTAC---ATAT-AACGATACCTATTACATTATATAAGGGC
261 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
1296039 TACCTATTACATCATATGTTTACC---TATATTGAAAGTGTCCATACTTTTTAT--AAA--ATCG
326 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
1296097 ATACTTTTTTTAAAACTTATGTAATTT-TGTTTCAATTTT
391 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1296136 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATT
1296201 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAAT-A-ATATACC
65 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
1296264 GTAACGT-AAAAATAAATCATTAGACGCCTAT-ATTACTAAATTAATATCTTAAAACTCACTCAA
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
*
1296327 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA-TAGGGACACTTTTAT-AAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
1296390 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
1296455 CTACCTATTACATCATATGTTTACCTA-T-TATTGAAAGTGTCCATAC-TTTT-TAAAAAGGATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
1296516 GATACTTTTTTTTAAAACTTATGTAATTTATGTTTC-A-TTT
390 GATAC-TTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1296556 TTTAACAGTGTTTCATG-TTTCCACCTACAATATTGATTTAAT-ATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATT
1296619 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAAT-A-ATATACC
65 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
1296682 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC-A
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
1296746 AAGATAACCTT-AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
1296809 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
1296874 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTT-TATAAAAGGAT
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA-AAAAGGAT
1296938 CGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
389 CGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1296980 TTTAACAGTGTTTCATGTTTTCCACCTACAATA-TGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATT
1297044 ATTTGATTGTTTTGATATTTTAT--AATATTATTTAGAATTTTTAATTTAATAAT-A-ATATACC
65 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
1297105 GT-ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
1297169 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
1297233 ACAC-TTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
1297297 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
1297362 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
390 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1297403 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAAT-ATTTCATTTGCACAAAAATTA
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
1297467 TTTGATTG-TTTGATATTTTATAAAATA-TATTTAGAATTTTTAATTTAATAAT-A-ATATACCG
66 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
1297528 TAACGTAAAAAATAAATCATTAGACGCCTAT-ATTACTAAATTAATATCTTAAAACTCACTCAAA
131 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
1297592 AGATAACCTTAAATTAATGTTTTCCACAGTG--AAAAGTATGGACACTTTTATAAAAAGGATAGA
196 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
1297655 CACTTTACAATAT-ACCATTACCTATTACATTATATAAACGATACC--TTACATTATATAAGGGC
261 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
1297717 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
326 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
1297782 ATAC-TTTTTTAAAACTTATGT-ATTTA-GTTTCAATTTT
391 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1297819 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAA-TTCATTTGCACAAAAATTA
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
1297883 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTT-ATAATAATATATACCG
66 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
1297946 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTT-AAACTCACTCAAA
131 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
1298010 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
196 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
1298075 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
261 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
1298140 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATAC-TTTTAT-AAAAGGATCG
326 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
1298203 -TACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1298242 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
1298307 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAA-TTTTAATTTAATAATAATATATACCG
66 TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
1298371 TAACGTAAAAAAT-AATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
131 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
1298435 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
196 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
1298500 CACTTTACAATATAACCATTACCTATTACATTATATAAACG--A--TATTACATTATATAAGGGC
261 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
1298561 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
326 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
1298626 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
1298666 TTTAACAGTGT
1 TTTAACAGTGT
1298677 ACTGCGAATT
Statistics
Matches: 3305, Mismatches: 2, Indels: 141
0.96 0.00 0.04
Matches are distributed among these distances:
411 30 0.01
412 105 0.03
413 111 0.03
414 15 0.00
415 62 0.02
416 118 0.04
417 95 0.03
418 268 0.08
419 312 0.09
420 138 0.04
421 253 0.08
422 316 0.10
423 546 0.17
424 426 0.13
425 422 0.13
426 42 0.01
427 46 0.01
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.40
Consensus pattern (430 bp):
TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAATTA
TTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACCG
TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
Found at i:1298569 original size:23 final size:21
Alignment explanation
Indices: 1298519--1298577 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
1298509 ATATAACCAT
1298519 TACCTATTACATTATATAAAC
1 TACCTATTACATTATATAAAC
* *
1298540 GA--TATTACATTATATAAGGGC
1 TACCTATTACATTATATAA--AC
*
1298561 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1298578 GTTTACCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 15 0.50
21 3 0.10
23 12 0.40
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (21 bp):
TACCTATTACATTATATAAAC
Done.