Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008189.1 Hibiscus syriacus cultivar Beakdansim tig00110797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63952
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:6771 original size:22 final size:22
Alignment explanation
Indices: 6745--6786 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6735 AAGTTAGGGT
*
6745 TTATGGTTTAGAGATTATAAGG
1 TTATGGTTTAAAGATTATAAGG
*
6767 TTATGGTTTAAAGTTTATAA
1 TTATGGTTTAAAGATTATAA
6787 TTTAGGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (22 bp):
TTATGGTTTAAAGATTATAAGG
Found at i:7144 original size:3 final size:3
Alignment explanation
Indices: 7133--7193 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
7123 TTTTTTATCG
** * *
7133 TTA TT- TTA TTA TTA TTA TTA TTA TTA TCG TCA -TC TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7178 TTA TTA TTTA TTA TTA
1 TTA TTA -TTA TTA TTA
7194 CATATTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 4 0.08
3 41 0.85
4 3 0.06
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7188 original size:29 final size:30
Alignment explanation
Indices: 7126--7188 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
7116 CCGGGTTTTT
* *
7126 TTTATCGTTATTTTATTATTATTATTATTA
1 TTTATCGTCATCTTATTATTATTATTATTA
7156 -TTATCGTCATCTTATTATT-TTATTATTA
1 TTTATCGTCATCTTATTATTATTATTATTA
7184 TTTAT
1 TTTAT
7189 TATTACATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.65
Consensus pattern (30 bp):
TTTATCGTCATCTTATTATTATTATTATTA
Found at i:7246 original size:11 final size:11
Alignment explanation
Indices: 7230--7261 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
7220 CCCAATACAA
7230 CAAGGCCCAAC
1 CAAGGCCCAAC
7241 CAAGGCCCAAC
1 CAAGGCCCAAC
7252 CAAGGCCCAA
1 CAAGGCCCAA
7262 ACACGAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.44, G:0.19, T:0.00
Consensus pattern (11 bp):
CAAGGCCCAAC
Found at i:9280 original size:17 final size:18
Alignment explanation
Indices: 9258--9291 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9248 AAGTCGATTA
*
9258 TATTTTACTAAT-TAATT
1 TATTTTAATAATGTAATT
9275 TATTTTAATAATGTAAT
1 TATTTTAATAATGTAAT
9292 GTGTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATTTTAATAATGTAATT
Found at i:10795 original size:31 final size:32
Alignment explanation
Indices: 10760--10821 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
10750 ATTTTGCATG
10760 TACTAACTTATTT-TTCTCTTTTGTTTGTGTA
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
10791 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
10822 CATTTTGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.61
Consensus pattern (32 bp):
TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
Found at i:13163 original size:26 final size:25
Alignment explanation
Indices: 13134--13211 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 25
13124 CAATTTTGAC
13134 ATTCTATCTCTTTGAGACCTTGAAAT
1 ATTCT-TCTCTTTGAGACCTTGAAAT
* *
13160 A---TTCT-TTT-CGACCTTGAAAC
1 ATTCTTCTCTTTGAGACCTTGAAAT
*
13180 ATTCCCTCTCTTTGAGACCTTGAAAT
1 ATT-CTTCTCTTTGAGACCTTGAAAT
13206 ATTCTT
1 ATTCTT
13212 TCCACCTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
20 11 0.28
21 3 0.08
22 3 0.08
23 1 0.03
24 3 0.08
25 5 0.12
26 14 0.35
ACGTcount: A:0.24, C:0.23, G:0.10, T:0.42
Consensus pattern (25 bp):
ATTCTTCTCTTTGAGACCTTGAAAT
Found at i:13172 original size:20 final size:20
Alignment explanation
Indices: 13149--13223 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
13139 ATCTCTTTGA
13149 GACCTTGAAATATTCTTTTC
1 GACCTTGAAATATTCTTTTC
* *
13169 GACCTTGAAACATTCCCTCTCTTTGA
1 GACCTTGAAATA-T---TCT-TTT-C
13195 GACCTTGAAATATTC-TTTC
1 GACCTTGAAATATTCTTTTC
*
13214 CACCTTGAAA
1 GACCTTGAAA
13224 CACTGTATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.20
20 14 0.32
21 1 0.02
22 2 0.05
24 3 0.07
25 4 0.09
26 11 0.25
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (20 bp):
GACCTTGAAATATTCTTTTC
Found at i:13859 original size:11 final size:11
Alignment explanation
Indices: 13831--13868 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
13821 AAGAGCAAAG
13831 AGAAAAATCAA
1 AGAAAAATCAA
13842 AGCAAAAATCAA
1 AG-AAAAATCAA
*
13854 AGAAAAAGCAA
1 AGAAAAATCAA
13865 AGAA
1 AGAA
13869 CAAAAGATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.71, C:0.11, G:0.13, T:0.05
Consensus pattern (11 bp):
AGAAAAATCAA
Found at i:15564 original size:36 final size:34
Alignment explanation
Indices: 15518--15587 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 34
15508 ATTTTTCTAA
* * *
15518 AAAATAAATTTTGTCTCGCTTGAGACAATTTATTTC
1 AAAACAAATTTCGTCTCACTTGAGAC-ATTT-TTTC
*
15554 AAAACAAATTTCGTCTCATTTGAGACATTTTTTC
1 AAAACAAATTTCGTCTCACTTGAGACATTTTTTC
15588 CTTTGAGATC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.13
35 4 0.13
36 22 0.73
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (34 bp):
AAAACAAATTTCGTCTCACTTGAGACATTTTTTC
Found at i:15728 original size:196 final size:198
Alignment explanation
Indices: 15377--15768 Score: 623
Period size: 196 Copynumber: 2.0 Consensus size: 198
15367 ATTCAGTCCC
15377 TTGAGACATTTTTTCCTTTGAGATCCAAATTTTGAATTTGTTTCACATTAAACAAAGTTGATCTC
1 TTGAGACATTTTTTCCTTTGAGATCCAAATTTTGAATTTGTTTCACATTAAACAAAGTTGATCTC
* *
15442 ATTTGAGATCGTATCTATTTCAAAACAAATTTTTGTCCCTTGAGACATTTTTCCACAAACTTTGA
66 ATTTGAGATCGTATCTATTTCAAAACAAATTTTTGTCCCTGGAGACAGTTTTCCACAAACTTTGA
*
15507 GATTTTTCTAAAAAATAAATTTTGTCTC-GC-TTGAGACAATTTATTTCAAAACAAATTTCGTCT
131 GATATTTCTAAAAAATAAATTTTGTCTCAGCTTTGAGACAATTTATTTCAAAACAAATTTCGTCT
15570 CAT
196 CAT
15573 TTGAGACATTTTTTCCTTTGAGATCCAAATTTTGAATTTGTTTCACATTAAACAAAGTTGATCTC
1 TTGAGACATTTTTTCCTTTGAGATCCAAATTTTGAATTTGTTTCACATTAAACAAAGTTGATCTC
* *
15638 ATTTGAGATCGTATCTATTTCAAAACAAAATTTTTGTCTCACTGGAGATAGTTTTCCACAAATTT
66 ATTTGAGATCGTATCTATTTCAAAAC-AAATTTTTGTC-C-CTGGAGACAGTTTTCCACAAACTT
* * * * * *
15703 TGAGA-ATTT-TAAAACA-AATTTTTGTCTCATCTTTGAGACAATTTCTTTCAAAGCAAATTTTG
128 TGAGATATTTCTAAAAAATAAATTTTGTCTCAGCTTTGAGACAATTTATTTCAAAACAAATTTCG
15765 TCTC
193 TCTC
15769 GATCGAGACA
Statistics
Matches: 180, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
196 102 0.57
197 18 0.10
198 35 0.19
199 25 0.14
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (198 bp):
TTGAGACATTTTTTCCTTTGAGATCCAAATTTTGAATTTGTTTCACATTAAACAAAGTTGATCTC
ATTTGAGATCGTATCTATTTCAAAACAAATTTTTGTCCCTGGAGACAGTTTTCCACAAACTTTGA
GATATTTCTAAAAAATAAATTTTGTCTCAGCTTTGAGACAATTTATTTCAAAACAAATTTCGTCT
CAT
Found at i:15799 original size:35 final size:36
Alignment explanation
Indices: 15713--15832 Score: 120
Period size: 35 Copynumber: 3.3 Consensus size: 36
15703 TGAGAATTTT
**
15713 AAAACAAATTTTTGTCTC-ATCTTTGAGACAATTTCTTTC
1 AAAACAAA-TTTTGTCTCGATC---GAGACAATTTCTTGA
* *
15752 AAAGCAAATTTTGTCTCGATCGAGACAGCTTTC-T-A
1 AAAACAAATTTTGTCTCGATCGAGACA-ATTTCTTGA
* *
15787 AAAACAAATTTTGTCTCGTTTGAGACAATTTCTTGA
1 AAAACAAATTTTGTCTCGATCGAGACAATTTCTTGA
15823 AAAACAAATT
1 AAAACAAATT
15833 CCGCCTTACT
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
34 4 0.06
35 25 0.36
36 18 0.26
37 4 0.06
38 9 0.13
39 10 0.14
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGATCGAGACAATTTCTTGA
Found at i:16016 original size:36 final size:36
Alignment explanation
Indices: 15935--16016 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
15925 ATTTTGTTTT
* *
15935 GCTTGAGACAATTTCTTTAAAAACAAAGTTTGTATC
1 GCTTGAGACAAATTCTTTAAAAACAAAGTTCGTATC
* * *
15971 ACTTAAGACAAATTCTCTT-AAAACAAA-TTGCGTCTC
1 GCTTGAGACAAATTCT-TTAAAAACAAAGTT-CGTATC
16007 GCTTGAGACA
1 GCTTGAGACA
16017 TTTTTCCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
35 2 0.05
36 33 0.89
37 2 0.05
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (36 bp):
GCTTGAGACAAATTCTTTAAAAACAAAGTTCGTATC
Found at i:16585 original size:28 final size:27
Alignment explanation
Indices: 16545--16639 Score: 113
Period size: 28 Copynumber: 3.5 Consensus size: 27
16535 TTCTCTTGAA
16545 AAAATCTTTGAGTTAGTTCCTTTTAAAT
1 AAAATCTTTGAGTT-GTTCCTTTTAAAT
* *
16573 AAAATCTTGGAGTTTGTTCCTTTTGAAT
1 AAAATCTTTGAG-TTGTTCCTTTTAAAT
* *
16601 AAATATCTTTGAGTTGTTTCTTTT-GA-
1 AAA-ATCTTTGAGTTGTTCCTTTTAAAT
16627 AAAATCTTTGAGT
1 AAAATCTTTGAGT
16640 CTATTTATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.17
26 3 0.05
27 1 0.02
28 36 0.60
29 10 0.17
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.47
Consensus pattern (27 bp):
AAAATCTTTGAGTTGTTCCTTTTAAAT
Found at i:16651 original size:54 final size:55
Alignment explanation
Indices: 16540--16654 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 55
16530 ACAGTTTCTC
* * *
16540 TTGAAAAAATCTTTGAGTTAGTTCCTTTTAAATAAAATCTTGGAGTTTGTTCCTT
1 TTGAAAAAATCTTTGAGTTAGTTCCTTTTAAATAAAATCTTGGAGTCTATTCATT
* * * *
16595 TTGAATAAATATCTTTGAGTT-GTTTCTTTT-GA-AAAATCTTTGAGTCTATTTATT
1 TTGAA-AAA-ATCTTTGAGTTAGTTCCTTTTAAATAAAATCTTGGAGTCTATTCATT
16649 TTGAAA
1 TTGAAA
16655 CAAAGTTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
53 1 0.02
54 22 0.43
55 6 0.12
56 11 0.22
57 11 0.22
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.48
Consensus pattern (55 bp):
TTGAAAAAATCTTTGAGTTAGTTCCTTTTAAATAAAATCTTGGAGTCTATTCATT
Found at i:16809 original size:28 final size:28
Alignment explanation
Indices: 16735--16799 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
16725 CTTTAGACAA
16735 TTTTGTGAAAAAATCTTTGAGATTGTTTC
1 TTTTG-GAAAAAATCTTTGAGATTGTTTC
*
16764 TTTTGGAAAAAATCTTTGAGTTTGTTTC
1 TTTTGGAAAAAATCTTTGAGATTGTTTC
16792 -TTTGGAAA
1 TTTTGGAAA
16800 CAAAATTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 8 0.23
28 22 0.63
29 5 0.14
ACGTcount: A:0.28, C:0.06, G:0.18, T:0.48
Consensus pattern (28 bp):
TTTTGGAAAAAATCTTTGAGATTGTTTC
Found at i:16837 original size:37 final size:37
Alignment explanation
Indices: 16787--16903 Score: 115
Period size: 37 Copynumber: 3.4 Consensus size: 37
16777 CTTTGAGTTT
16787 GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA
1 GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA
* * * *
16824 GTTTCTTTTGAAACAAAA------ATCT-TTGAG-TCT
1 GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGAT-A
16854 GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA
1 GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA
* *
16891 ATTTCTTTTGAAA
1 GTTTCTTTGGAAA
16904 AAATCTTTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
29 1 0.02
30 21 0.34
31 3 0.05
36 3 0.05
37 32 0.52
38 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (37 bp):
GTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATA
Found at i:16847 original size:67 final size:65
Alignment explanation
Indices: 16754--16977 Score: 276
Period size: 67 Copynumber: 3.4 Consensus size: 65
16744 AAAATCTTTG
* * *
16754 AGATTGTTTCTTTTGGAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTA
1 AGATAGTTTCTTTTGAAAAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTA
16819 AGATAGTTTCTTTTGAAACAAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCT
1 AGATAGTTTCTTTTG-AA-AAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCT
16884 TA
64 TA
* * * *
16886 AGATAATTTCTTTTG-AAAAAATCTTTGAATCTGTTT-TTCT-TAAA-ATAAATTTTGTATCTCT
1 AGATAGTTTCTTTTGAAAAAAATCTTTGAGTCTGTTTCTT-TGGAAACA-AAATTTTGTCTCTCT
*
16947 TG
64 TA
* * **
16949 AGACAGTTTCTCTTGAAGTAAATCTTTGA
1 AGATAGTTTCTTTTGAAAAAAATCTTTGA
16978 ATATGTTCAT
Statistics
Matches: 141, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
62 1 0.01
63 32 0.23
64 31 0.22
65 15 0.11
66 1 0.01
67 61 0.43
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (65 bp):
AGATAGTTTCTTTTGAAAAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTA
Found at i:17165 original size:63 final size:62
Alignment explanation
Indices: 17062--17179 Score: 177
Period size: 63 Copynumber: 1.9 Consensus size: 62
17052 GAAACAAAAC
17062 AAACATCTTTGAGATCATTTCCCTTTAAACAAATTTTGTCTCATTCGAGACAGTTTTCCTTT
1 AAACATCTTTGAGATCATTTCCCTTTAAACAAATTTTGTCTCATTCGAGACAGTTTTCCTTT
* *
17124 AAACAATCTTTGAG-TCATTT-CCTTTGAAACAAAATTTTGTCTCTTTTGAGACAGTT
1 AAAC-ATCTTTGAGATCATTTCCCTTT-AAAC-AAATTTTGTCTCATTCGAGACAGTT
17180 GCTTTTGAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
61 5 0.10
62 14 0.27
63 32 0.63
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.42
Consensus pattern (62 bp):
AAACATCTTTGAGATCATTTCCCTTTAAACAAATTTTGTCTCATTCGAGACAGTTTTCCTTT
Found at i:17412 original size:46 final size:45
Alignment explanation
Indices: 17317--17529 Score: 196
Period size: 46 Copynumber: 4.9 Consensus size: 45
17307 GACCAGATCC
* *
17317 CCTCATCACGTAGGAGCCGTGTCA--ACCATAGATAACCAGCCGT
1 CCTCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGT
* **
17360 CCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGCCGT
1 CCTCATCACGTAGGAACCGTGTCATCACC-TTAGATAACCAGCCGT
* * *
17406 CCTCATCATGTAGGAACCGTGTCATC-CC-CAG---ACCAGATC-T
1 CCTCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAG-CCGT
* * **
17446 CTTCATCACGTATGAGTCGTGTCA-C-CC-TAGATAACCAGCCGT
1 CCTCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGT
* *
17488 CCTCATCACGTAGGAACCGTGTTATCACCCTTAGATGACCAG
1 CCTCATCACGTAGGAACCGTGTCATCA-CCTTAGATAACCAG
17530 ACCTCTTCAT
Statistics
Matches: 135, Mismatches: 23, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
39 5 0.04
40 24 0.18
41 2 0.01
42 25 0.19
43 25 0.19
45 7 0.05
46 47 0.35
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (45 bp):
CCTCATCACGTAGGAACCGTGTCATCACCTTAGATAACCAGCCGT
Found at i:17556 original size:128 final size:129
Alignment explanation
Indices: 17260--17563 Score: 432
Period size: 128 Copynumber: 2.4 Consensus size: 129
17250 CATAACTCCT
*
17260 TTAGATGACCAGATCTCCTCATCACGTATGAGCCGTGTCATTCCCCAGACCAGATCCCCTCATCA
1 TTAGATGACCAGACCTCCTCATCACGTATGAGCCGTGTCA-TCCCCAGACCAGATCCCCTCATCA
*
17325 CGTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCT
65 CGTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCC
* * * * * *
17390 TTAGATGGCCAG-CCGTCCTCATCATGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCA
1 TTAGATGACCAGACC-TCCTCATCACGTATGAGCCGTGTCATCCCCAGACCAGATCCCCTCATCA
* * *
17454 CGTATGAGTCGTGTC-ACCCTAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCC
65 CGTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCC
* ** * *
17518 TTAGATGACCAGACCTCTTCATTGCGTATGAGCAGTGTCGTCCCCA
1 TTAGATGACCAGACCTCCTCATCACGTATGAGCCGTGTCATCCCCA
17564 CCAACAGAAC
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
128 81 0.53
129 38 0.25
130 33 0.22
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (129 bp):
TTAGATGACCAGACCTCCTCATCACGTATGAGCCGTGTCATCCCCAGACCAGATCCCCTCATCAC
GTAGGAGCCGTGTCAACCATAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCC
Found at i:17728 original size:3 final size:3
Alignment explanation
Indices: 17717--17777 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
17707 TTTTTTATCG
** * *
17717 TTA TT- TTA TTA TTA TTA TTA TTA TTA TCG TCA -TC TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17762 TTA TTA TTTA TTA TTA
1 TTA TTA -TTA TTA TTA
17778 CATATTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 4 0.08
3 41 0.85
4 3 0.06
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:17772 original size:29 final size:30
Alignment explanation
Indices: 17710--17772 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
17700 CGGGTTTTTT
* *
17710 TTTATCGTTATTTTATTATTATTATTATTA
1 TTTATCGTCATCTTATTATTATTATTATTA
17740 -TTATCGTCATCTTATTATT-TTATTATTA
1 TTTATCGTCATCTTATTATTATTATTATTA
17768 TTTAT
1 TTTAT
17773 TATTACATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.65
Consensus pattern (30 bp):
TTTATCGTCATCTTATTATTATTATTATTA
Found at i:17829 original size:11 final size:11
Alignment explanation
Indices: 17813--17844 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
17803 CCCAATACAA
17813 CAAGGCCCAAC
1 CAAGGCCCAAC
17824 CAAGGCCCAAC
1 CAAGGCCCAAC
17835 CAAGGCCCAA
1 CAAGGCCCAA
17845 ACACGAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.44, G:0.19, T:0.00
Consensus pattern (11 bp):
CAAGGCCCAAC
Found at i:19875 original size:17 final size:18
Alignment explanation
Indices: 19853--19886 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19843 AAGTCGATTA
*
19853 TATTTTACTAAT-TAATT
1 TATTTTAATAATGTAATT
19870 TATTTTAATAATGTAAT
1 TATTTTAATAATGTAAT
19887 GTGTGTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATTTTAATAATGTAATT
Found at i:29201 original size:32 final size:33
Alignment explanation
Indices: 29139--29202 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
29129 TGAGCAGCTC
* * *
29139 AAAAATATAATATATTAAGATTTTATTTTTTAA
1 AAAAATATAATATATTAAAATATTAATTTTTAA
29172 AAAAATA-AAT-TATTAATAATATTAATTTTTA
1 AAAAATATAATATATTAA-AATATTAATTTTTA
29203 TGTATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 6 0.22
32 14 0.52
33 7 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (33 bp):
AAAAATATAATATATTAAAATATTAATTTTTAA
Found at i:33035 original size:39 final size:39
Alignment explanation
Indices: 32976--33051 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
32966 ATGTGAAACG
32976 TTCAGTTTGGTGCATGCCAATAGATGCATTGGCAATGTT
1 TTCAGTTTGGTGCATGCCAATAGATGCATTGGCAATGTT
* *
33015 TTCATTTTGGTGGATGCCAATAGATGCATTGGCAATG
1 TTCAGTTTGGTGCATGCCAATAGATGCATTGGCAATG
33052 ATTCATATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (39 bp):
TTCAGTTTGGTGCATGCCAATAGATGCATTGGCAATGTT
Found at i:34272 original size:26 final size:25
Alignment explanation
Indices: 34250--34308 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
34240 TTTAATTACT
*
34250 TAACTTTCAAATTACTTATAATTTAA
1 TAACTTTCAAATTACTCATAA-TTAA
*
34276 TCACTTTCAAATTACTCATAATTTAA
1 TAACTTTCAAATTACTCATAA-TTAA
*
34302 TCACTTT
1 TAACTTT
34309 AACTTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (25 bp):
TAACTTTCAAATTACTCATAATTAA
Found at i:41610 original size:15 final size:15
Alignment explanation
Indices: 41590--41618 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
41580 CACGGTGCTA
41590 CCGGAATCCTGCGCC
1 CCGGAATCCTGCGCC
41605 CCGGAATCCTGCGC
1 CCGGAATCCTGCGC
41619 TATTGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.45, G:0.28, T:0.14
Consensus pattern (15 bp):
CCGGAATCCTGCGCC
Found at i:44187 original size:11 final size:11
Alignment explanation
Indices: 44156--44181 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44146 ATATTAGTTT
44156 TAAAACTTTTA
1 TAAAACTTTTA
44167 TAAAACTTTTA
1 TAAAACTTTTA
44178 TAAA
1 TAAA
44182 TATTTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAAACTTTTA
Found at i:44274 original size:17 final size:16
Alignment explanation
Indices: 44230--44274 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
44220 TTCTGTAAAA
44230 TTATTTTTAAAATAAT
1 TTATTTTTAAAATAAT
* *
44246 GTATTTTATAAAATTAT
1 TTATTTT-TAAAATAAT
44263 TTATATTTTAAA
1 TTAT-TTTTAAA
44275 TTACTTACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 6 0.25
17 15 0.62
18 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
TTATTTTTAAAATAAT
Found at i:47322 original size:59 final size:59
Alignment explanation
Indices: 47169--47349 Score: 220
Period size: 59 Copynumber: 3.1 Consensus size: 59
47159 GTCAATGGAT
* * * * * * ** * *
47169 CATTTTATAACTTCTAATAGTC-AGAGGATTCAACAAAGAAACACCCCATCGTCGGGGAT
1 CATTTTGTAACTTTTAATAGTCGAGA-GACTCAAGAAAGCATCACCTTATAGTCGGGGAC
*
47228 CATTTTGTAACTTTTAATAGTCGAGAGACTCAAGAAAGCATCACCTTATAGTCGGTGAC
1 CATTTTGTAACTTTTAATAGTCGAGAGACTCAAGAAAGCATCACCTTATAGTCGGGGAC
* *
47287 CATTTTGTAACTTTTAATAGTCGAGAGACTTAAGAAAGCATCATCTTATAGTCGGGGGAC
1 CATTTTGTAACTTTTAATAGTCGAGAGACTCAAGAAAGCATCACCTTATAGTC-GGGGAC
47347 CAT
1 CAT
47350 ATGTATATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
59 95 0.90
60 11 0.10
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (59 bp):
CATTTTGTAACTTTTAATAGTCGAGAGACTCAAGAAAGCATCACCTTATAGTCGGGGAC
Found at i:47815 original size:2 final size:2
Alignment explanation
Indices: 47808--47841 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
47798 ATTGACCTTT
47808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47842 GACAGTAACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:49420 original size:23 final size:25
Alignment explanation
Indices: 49379--49430 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
49369 TAACAAGTTG
*
49379 AAAAATATTTATATATTTTCTTTAA
1 AAAAATATATATATATTTTCTTTAA
* *
49404 AAAAATATATA-AT-TTTTTTTTAC
1 AAAAATATATATATATTTTCTTTAA
49427 AAAA
1 AAAA
49431 TTGAAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.50
24 2 0.08
25 10 0.42
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
AAAAATATATATATATTTTCTTTAA
Found at i:51158 original size:19 final size:18
Alignment explanation
Indices: 51095--51161 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 18
51085 TTGTTCACAT
* *
51095 TTTTAAATTATGATTTTA
1 TTTTAAATTATAATTTCA
* *
51113 TTTTAAATTTTTAACTTCA
1 TTTTAAA-TTATAATTTCA
51132 TCTTTAAATTATAAGTTTCA
1 T-TTTAAATTATAA-TTTCA
51152 TTTTAAATTA
1 TTTTAAATTA
51162 GTTCTTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 7 0.17
19 22 0.55
20 11 0.28
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTTAAATTATAATTTCA
Found at i:57289 original size:21 final size:21
Alignment explanation
Indices: 57265--57304 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
57255 AGACTATAGC
57265 TTTTGAAATAAAAGTAAAGGT
1 TTTTGAAATAAAAGTAAAGGT
57286 TTTTGAAATAAAAGTAAAG
1 TTTTGAAATAAAAGTAAAG
57305 TTATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (21 bp):
TTTTGAAATAAAAGTAAAGGT
Found at i:57614 original size:30 final size:30
Alignment explanation
Indices: 57564--57625 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
57554 GGGAATCTTC
*
57564 TCGATATTACATCTG-GAAAAAAAATCCTA
1 TCGATATTACATCTGAAAAAAAAAATCCTA
57593 TCGATATTACAATCTGAAAAAAAAAATCCTA
1 TCGATATTAC-ATCTGAAAAAAAAAATCCTA
57624 TC
1 TC
57626 CAAACACCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 10 0.33
30 5 0.17
31 15 0.50
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (30 bp):
TCGATATTACATCTGAAAAAAAAAATCCTA
Found at i:58971 original size:16 final size:18
Alignment explanation
Indices: 58939--58972 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
58929 TATTAATGTA
58939 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
58957 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
58973 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:59614 original size:123 final size:126
Alignment explanation
Indices: 59435--59667 Score: 350
Period size: 123 Copynumber: 1.9 Consensus size: 126
59425 ATTTCTTCTA
*
59435 ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGTTAACACATGTAGATCCT
1 ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGCTAACACATGTAGATCCT
** * *
59500 GGTT-AATGATTAATTTA-TAAATTTTATTTATTTAGGACCAAATTGATAGCATATATAAT
66 AATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAATTGATAGCATATATAAT
* *
59559 ATTAGGTGGTGACAT-GTG-CACCAATGACAC-GTGTCATGATCATGTGCTAACACATGTAGATC
1 ATTAGGTGGTGACATGGTGTCACCAAT-A-ACTATATCATGATCATGTGCTAACACATGTAGATC
59621 CTAATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAAT
64 CTAATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAAT
59668 GATTATATAA
Statistics
Matches: 98, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
122 7 0.07
123 37 0.38
124 30 0.31
125 24 0.24
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (126 bp):
ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGCTAACACATGTAGATCCT
AATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAATTGATAGCATATATAAT
Found at i:59682 original size:124 final size:124
Alignment explanation
Indices: 59435--59683 Score: 337
Period size: 124 Copynumber: 2.0 Consensus size: 124
59425 ATTTCTTCTA
*
59435 ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGTTAACACATGTAGATCCT
1 ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGCTAACACATGTAGATCCT
** * * *
59500 GGTTAATGATTAATTTATAAATTTTATTTATTTAGGACCAAATTGATAGCATATATAAT
66 AATTAATGATTAATTTATAAATTCTATTAATTTAGGACCAAATTGATAGCATAAATAAT
* *
59559 ATTAGGTGGTGACAT-GTG-CACCAATGACAC-GTGTCATGATCATGTGCTAACACATGTAGATC
1 ATTAGGTGGTGACATGGTGTCACCAAT-A-ACTATATCATGATCATGTGCTAACACATGTAGATC
*
59621 CTAATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAA-TGATTA-TATAAATAAT
64 CTAATT-AATGATTAATTTA-TAAATTCTATTAATTTAGGACCAAATTGA-TAGCATAAATAAT
59683 A
1 A
59684 AAGACTGAAT
Statistics
Matches: 111, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
122 7 0.06
123 37 0.33
124 42 0.38
125 25 0.23
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (124 bp):
ATTAGGTGGTGACATGGTGTCACCAATAACTATATCATGATCATGTGCTAACACATGTAGATCCT
AATTAATGATTAATTTATAAATTCTATTAATTTAGGACCAAATTGATAGCATAAATAAT
Found at i:60118 original size:34 final size:35
Alignment explanation
Indices: 60053--60127 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 35
60043 AATTGAATTT
*
60053 AATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAATTTAGGGTTTAGAATGA
*
60088 AATTGAATTACTTTGGAA-TTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAATTTAGGGTTTAGAATGA
60122 AATTGA
1 AATTGA
60128 GGATGTTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 21 0.55
35 17 0.45
ACGTcount: A:0.35, C:0.01, G:0.24, T:0.40
Consensus pattern (35 bp):
AATTGAATTACTTTGGAATTTAGGGTTTAGAATGA
Found at i:61032 original size:2 final size:2
Alignment explanation
Indices: 61025--61077 Score: 74
Period size: 2 Copynumber: 27.5 Consensus size: 2
61015 TTATTATTTC
* *
61025 TA TA TA TA T- TA TA TA TG TA TA TA TA TA TA TA TA -A GA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
61065 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
61078 TAATAAAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:61036 original size:15 final size:17
Alignment explanation
Indices: 61023--61077 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
61013 TTTTATTATT
61023 TCTATATATATTATATA
1 TCTATATATATTATATA
*
61040 TGTATATATATATATATAA
1 TCTATATATAT-TATAT-A
**
61059 GATATATATATATATATA
1 TCTATATATAT-TATATA
61077 T
1 T
61078 TAATAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 10 0.31
18 6 0.19
19 16 0.50
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (17 bp):
TCTATATATATTATATA
Found at i:61708 original size:64 final size:64
Alignment explanation
Indices: 61501--61812 Score: 455
Period size: 64 Copynumber: 5.0 Consensus size: 64
61491 GATTTGATCA
* ** *
61501 CTTAAATAATTTCAGTTTAGATAT-TAATTATTACTTTTCTTTTAT-AAATTTGAAGTAACCAA
1 CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTTGAAGTAAATAC
61563 CTTAAATAATTTAAGTTTAG--ATATAATTATTACTTTTCTTTTAT-AAA-TTGAAGT-AATAC
1 CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTTGAAGTAAATAC
* *
61622 CTTAGATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTCT-AAATAAATAC
1 CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATT-TGAAGTAAATAC
61686 CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTTGAAGTAAATAC
1 CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTTGAAGTAAATAC
* * *
61750 CTTAAATAATTTAAGTTTAGATATATAATTATCACTTTTTCTTCTAT-AAA-TTAAAGTAAATAC
1 CTTAAATAATTTAAGTTTAGATATATAATTATTAC-TTTTCTTTTATAAAATTTGAAGTAAATAC
61813 AAGATAGTAT
Statistics
Matches: 230, Mismatches: 11, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
59 21 0.09
60 9 0.04
61 48 0.21
62 22 0.10
63 17 0.07
64 103 0.45
65 10 0.04
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (64 bp):
CTTAAATAATTTAAGTTTAGATATATAATTATTACTTTTCTTTTATAAAATTTGAAGTAAATAC
Found at i:62208 original size:23 final size:23
Alignment explanation
Indices: 62178--62242 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 23
62168 TATTTTGATG
62178 TTGAATCATTCAGCATTGTTTTA
1 TTGAATCATTCAGCATTGTTTTA
* ** *
62201 TTGAATCATTTCAACACCGTTTTG
1 TTGAATCA-TTCAGCATTGTTTTA
*
62225 TTGAATCAGTCAGCATTG
1 TTGAATCATTCAGCATTG
62243 AACATTCAGA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
23 14 0.42
24 19 0.58
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (23 bp):
TTGAATCATTCAGCATTGTTTTA
Done.