Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008191.1 Hibiscus syriacus cultivar Beakdansim tig00110800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63424
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:8 original size:3 final size:3
Alignment explanation
Indices: 1--124 Score: 175
Period size: 3 Copynumber: 41.0 Consensus size: 3
1 TTC TTC TTTC TTC TTC -TC TTC TTC TTC TTTC TTTC TTC TTC -TC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC -TTC -TTC TTC TTC TTC TTC
47 TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
93 TTTC TTC -TC TTC -TC TTC TTC TTC TTC TTC TTC
1 -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
125 AAACCTGTAA
Statistics
Matches: 113, Mismatches: 0, Indels: 16
0.88 0.00 0.12
Matches are distributed among these distances:
2 8 0.07
3 89 0.79
4 16 0.14
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:4160 original size:3 final size:3
Alignment explanation
Indices: 4152--4272 Score: 143
Period size: 3 Copynumber: 40.0 Consensus size: 3
4142 CCATATTGAT
* * * * * *
4152 TTA TTA TTA TAA TAA TTA TTA TTA TTA TTA TAA TTA CTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
4200 TTA TTA TTA TTA TTA CTA TAA ATA TTA TTA TTA TTA TTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
*
4249 ATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
4273 AATATATATA
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
3 97 0.98
4 2 0.02
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:4399 original size:13 final size:13
Alignment explanation
Indices: 4381--4406 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4371 AACCCTAGCC
4381 GCCTCTGCCTCCA
1 GCCTCTGCCTCCA
4394 GCCTCTGCCTCCA
1 GCCTCTGCCTCCA
4407 ACCGCCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.15, T:0.23
Consensus pattern (13 bp):
GCCTCTGCCTCCA
Found at i:6332 original size:27 final size:25
Alignment explanation
Indices: 6302--6359 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 25
6292 TATTTACTTA
6302 TTATTT-CATAATATTTATATGTTTATT
1 TTATTTGCA-AATATTTAT-TGTTTA-T
* *
6329 TTATTTGCAAGTATTTATTTTTTAT
1 TTATTTGCAAATATTTATTGTTTAT
6354 TTATTT
1 TTATTT
6360 TTCTGTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 7 0.25
26 5 0.18
27 14 0.50
28 2 0.07
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (25 bp):
TTATTTGCAAATATTTATTGTTTAT
Found at i:15908 original size:7 final size:7
Alignment explanation
Indices: 15896--15953 Score: 59
Period size: 7 Copynumber: 8.3 Consensus size: 7
15886 ATTATGCTTG
15896 AAGAAAA
1 AAGAAAA
15903 AAG-AAA
1 AAGAAAA
*
15909 AA-AAGA
1 AAGAAAA
15915 AAGAAAA
1 AAGAAAA
15922 AAGAAAA
1 AAGAAAA
15929 GAA-AAAA
1 -AAGAAAA
15936 AGAGAAAA
1 A-AGAAAA
15944 AAGAAGAA
1 AAGAA-AA
15952 AA
1 AA
15954 AGGGGGGGTC
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
6 10 0.23
7 22 0.51
8 11 0.26
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:15919 original size:12 final size:12
Alignment explanation
Indices: 15902--15954 Score: 62
Period size: 11 Copynumber: 4.8 Consensus size: 12
15892 CTTGAAGAAA
15902 AAAGAAAAAAAG
1 AAAGAAAAAAAG
15914 AAAG-AAAAAAG
1 AAAGAAAAAAAG
15925 AAAAGAAAAAAAG
1 -AAAGAAAAAAAG
15938 --AG-AAAAAAG
1 AAAGAAAAAAAG
15947 -AAGAAAAA
1 AAAGAAAAA
15955 GGGGGGGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
9 7 0.19
10 4 0.11
11 11 0.30
12 8 0.22
13 7 0.19
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:15928 original size:24 final size:22
Alignment explanation
Indices: 15901--15948 Score: 78
Period size: 24 Copynumber: 2.1 Consensus size: 22
15891 GCTTGAAGAA
15901 AAAAGAAAAAAAGAAAGAAAAAAG
1 AAAAGAAAAAAAG--AGAAAAAAG
15925 AAAAGAAAAAAAGAGAAAAAAG
1 AAAAGAAAAAAAGAGAAAAAAG
15947 AA
1 AA
15949 GAAAAAGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.46
24 13 0.54
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AAAAGAAAAAAAGAGAAAAAAG
Found at i:17223 original size:83 final size:83
Alignment explanation
Indices: 17084--17354 Score: 506
Period size: 83 Copynumber: 3.3 Consensus size: 83
17074 AAACATTAAA
* *
17084 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGGGTTATCTGATCTGGTTTAGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
17149 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
17167 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
17232 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
* *
17250 TGGAAGATGAATTTGCTAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
17315 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
17333 TGGAAGATGAATTTGCTCATAG
1 TGGAAGATGAATTTGCTCATAG
17355 TATAAATAAG
Statistics
Matches: 182, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 182 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (83 bp):
TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
AGAACCAATCATTGAATT
Found at i:18356 original size:113 final size:113
Alignment explanation
Indices: 18172--19004 Score: 1359
Period size: 113 Copynumber: 7.4 Consensus size: 113
18162 TAGATTGACA
18172 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
18237 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
*
18285 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
18350 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
18398 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
18463 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
* *
18511 TTTCCAGAGAAAGTTCATAATTAGAAGAACTCATCTGAAGAAGGAAGATGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
*
18576 AGAATTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
18624 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * *
18689 AGAACTTGTTCAACCTTTTACCTGAATTCATCAATTGATGGATCAGCC
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
* *
18737 TTTCCAGAAAAAGTTCATAATGA-AATGAACTCATCTGAAGAAGGATGAAGAAGTTCATAATGAG
1 TTTCCAGAGAAAGTTCATAATGAGAA-GAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* * * * *
18801 AAGAATTTGTTCAACCTTTTG-CTCAAATCTATCACTTGATAGATTAGCT
65 AAGAACTTGTTCAACCTTTTGCCTGAATTC-ATCACTTGATGGATCAGCT
**** * * *
18850 TTTCCAGTTCGAGTTCATAATAAGAAGAACTCATCTGAAGAATGATGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * * * *
18915 AGAATTTGTTCAGA-TTTTTG-CTCAAATACATCACTTGATGGATCAACT
66 AGAACTTGTTCA-ACCTTTTGCCT-GAATTCATCACTTGATGGATCAGCT
*
18963 TTTCTAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
19005 AGAACTTGTT
Statistics
Matches: 675, Mismatches: 40, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
112 8 0.01
113 661 0.98
114 6 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (113 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCT
Found at i:19360 original size:3 final size:3
Alignment explanation
Indices: 19352--19471 Score: 132
Period size: 3 Copynumber: 40.0 Consensus size: 3
19342 CCATATTGAT
* * * * * *
19352 TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TAA TTA CTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
19400 TTA TTA TTA TTA TTA CTA TAA ATA TTA TTA TTA TTA TTA CTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
19448 ATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
19472 AATATATATA
Statistics
Matches: 93, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 93 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:19387 original size:27 final size:27
Alignment explanation
Indices: 19352--19471 Score: 177
Period size: 27 Copynumber: 4.3 Consensus size: 27
19342 CCATATTGAT
19352 TTATTATTATAATTATAATTATTATTATTA
1 TTATTATTATAA--AT-ATTATTATTATTA
* *
19382 TAATTACTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
*
19409 TTATTACTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
*
19436 TTACTATTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
19463 TTATTATTA
1 TTATTATTA
19472 AATATATATA
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
27 72 0.86
28 2 0.02
30 10 0.12
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (27 bp):
TTATTATTATAAATATTATTATTATTA
Found at i:19607 original size:16 final size:16
Alignment explanation
Indices: 19588--19628 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
19578 CTCTAACCCT
*
19588 AGCCGCCTCTGCCTCC
1 AGCCGCCTCTGCCCCC
19604 AGCCGCCTCTGCCCCC
1 AGCCGCCTCTGCCCCC
*
19620 AACCGCCTC
1 AGCCGCCTC
19629 AGCCAATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.59, G:0.17, T:0.15
Consensus pattern (16 bp):
AGCCGCCTCTGCCCCC
Found at i:20851 original size:13 final size:13
Alignment explanation
Indices: 20835--20874 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
20825 ATATAATAAA
20835 TAAATATTTATTT
1 TAAATATTTATTT
*
20848 TAAATAAATTATTT
1 TAAAT-ATTTATTT
20862 T-AATATTTATTT
1 TAAATATTTATTT
20874 T
1 T
20875 TCAATATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:27215 original size:18 final size:18
Alignment explanation
Indices: 27163--27216 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
27153 TTGATATTTA
*
27163 AATTTTAGATAAAATATC
1 AATTTTAGATAAAATATT
*
27181 AATTTAAG-T---AT-TT
1 AATTTTAGATAAAATATT
27194 AATTTTAGATAAAATATT
1 AATTTTAGATAAAATATT
27212 AATTT
1 AATTT
27217 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 10
0.68 0.07 0.24
Matches are distributed among these distances:
13 8 0.29
14 3 0.11
17 3 0.11
18 14 0.50
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (18 bp):
AATTTTAGATAAAATATT
Found at i:27216 original size:31 final size:31
Alignment explanation
Indices: 27130--27229 Score: 114
Period size: 31 Copynumber: 3.2 Consensus size: 31
27120 GTTTGATGAC
** *
27130 TAAATTTTTA-ATAAAATATTGTTTTGATATT
1 TAAA-TTTTAGATAAAATATTAATTTAATATT
*
27161 TAAATTTTAGATAAAATATCAATTTAAGTATT
1 TAAATTTTAGATAAAATATTAATTTAA-TATT
*
27193 T-AATTTTAGATAAAATATTAATTTAATTTT
1 TAAATTTTAGATAAAATATTAATTTAATATT
*
27223 TGAATTT
1 TAAATTT
27230 GATTTAAGTC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
30 9 0.15
31 46 0.77
32 5 0.08
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (31 bp):
TAAATTTTAGATAAAATATTAATTTAATATT
Found at i:27367 original size:2 final size:2
Alignment explanation
Indices: 27360--27390 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
27350 ATCTCACGAA
*
27360 AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27391 ATCAATTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:28200 original size:14 final size:14
Alignment explanation
Indices: 28183--28212 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
28173 TAGATTAACT
*
28183 TTTAAATATTAAAA
1 TTTAAATAATAAAA
28197 TTTAAATAATAAAA
1 TTTAAATAATAAAA
28211 TT
1 TT
28213 ATTAGATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAATAATAAAA
Found at i:29136 original size:3 final size:3
Alignment explanation
Indices: 29128--29244 Score: 126
Period size: 3 Copynumber: 39.0 Consensus size: 3
29118 TGATATTGAT
* * * * * *
29128 TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TAA TTA CTA TAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
29176 TTA TTA TTA TTA TTA CTA TAA ATA TTA TTA TTA TTA TTA CTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
29224 ATA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
29245 AATATATATA
Statistics
Matches: 90, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:29163 original size:27 final size:27
Alignment explanation
Indices: 29128--29244 Score: 171
Period size: 27 Copynumber: 4.2 Consensus size: 27
29118 TGATATTGAT
29128 TTATTATTATAATTATAATTATTATTATTA
1 TTATTATTATAA--AT-ATTATTATTATTA
* *
29158 TAATTACTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
*
29185 TTATTACTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
*
29212 TTACTATTATAAATATTATTATTATTA
1 TTATTATTATAAATATTATTATTATTA
29239 TTATTA
1 TTATTA
29245 AATATATATA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
27 69 0.85
28 2 0.02
30 10 0.12
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (27 bp):
TTATTATTATAAATATTATTATTATTA
Found at i:29380 original size:16 final size:16
Alignment explanation
Indices: 29361--29401 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
29351 CTCTAACCCT
*
29361 AGCCGCCTCTGCCTCC
1 AGCCGCCTCTGCCCCC
*
29377 AGCCACCTCTGCCCCC
1 AGCCGCCTCTGCCCCC
*
29393 AACCGCCTC
1 AGCCGCCTC
29402 AGCCAATGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.59, G:0.15, T:0.15
Consensus pattern (16 bp):
AGCCGCCTCTGCCCCC
Found at i:30624 original size:13 final size:13
Alignment explanation
Indices: 30608--30647 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
30598 ATATAATAAA
30608 TAAATATTTATTT
1 TAAATATTTATTT
*
30621 TAAATAAATTATTT
1 TAAAT-ATTTATTT
30635 T-AATATTTATTT
1 TAAATATTTATTT
30647 T
1 T
30648 TCAATATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:32942 original size:10 final size:10
Alignment explanation
Indices: 32927--32972 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
32917 AACGCTGGAA
32927 ACCGGTTTTG
1 ACCGGTTTTG
**
32937 ACCGG-TTAA
1 ACCGGTTTTG
32946 ACCGGTTTTG
1 ACCGGTTTTG
32956 AACCGGTTTTG
1 -ACCGGTTTTG
32967 ACCGGT
1 ACCGGT
32973 CACGACCCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 7 0.23
10 13 0.43
11 10 0.33
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (10 bp):
ACCGGTTTTG
Found at i:32949 original size:19 final size:20
Alignment explanation
Indices: 32925--32963 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
32915 TGAACGCTGG
32925 AAACCGGTTTTG-ACCGGTT
1 AAACCGGTTTTGAACCGGTT
32944 AAACCGGTTTTGAACCGGTT
1 AAACCGGTTTTGAACCGGTT
32964 TTGACCGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (20 bp):
AAACCGGTTTTGAACCGGTT
Found at i:32961 original size:11 final size:11
Alignment explanation
Indices: 32926--32972 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
32916 GAACGCTGGA
32926 AACCGGTTTTG
1 AACCGGTTTTG
*
32937 -ACCGG--TTA
1 AACCGGTTTTG
32945 AACCGGTTTTG
1 AACCGGTTTTG
32956 AACCGGTTTTG
1 AACCGGTTTTG
32967 -ACCGGT
1 AACCGGT
32973 CACGACCCGT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 2 0.06
9 5 0.16
10 11 0.35
11 13 0.42
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (11 bp):
AACCGGTTTTG
Found at i:33026 original size:13 final size:13
Alignment explanation
Indices: 32985--33015 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32975 CGACCCGTTT
*
32985 ACCCGTTTACCCG
1 ACCCGTTGACCCG
32998 ACCCGTTGACCCG
1 ACCCGTTGACCCG
33011 ACCCG
1 ACCCG
33016 ACCCGTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.48, G:0.19, T:0.16
Consensus pattern (13 bp):
ACCCGTTGACCCG
Found at i:33102 original size:29 final size:29
Alignment explanation
Indices: 33041--33116 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
33031 ACCGTTGACC
*** *
33041 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
33070 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* *
33099 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
33117 TTTTAAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:40217 original size:10 final size:10
Alignment explanation
Indices: 40202--40247 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
40192 AACGCTGGAA
40202 ACCGGTTTTG
1 ACCGGTTTTG
*
40212 ACCGG-TTTA
1 ACCGGTTTTG
40221 ACCGGTTTTG
1 ACCGGTTTTG
40231 AACCGGTTTTG
1 -ACCGGTTTTG
40242 ACCGGT
1 ACCGGT
40248 CACGACCCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
10 14 0.44
11 10 0.31
ACGTcount: A:0.15, C:0.22, G:0.28, T:0.35
Consensus pattern (10 bp):
ACCGGTTTTG
Found at i:40225 original size:19 final size:20
Alignment explanation
Indices: 40201--40239 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
40191 GAACGCTGGA
40201 AACCGGTTTTG-ACCGGTTT
1 AACCGGTTTTGAACCGGTTT
40220 AACCGGTTTTGAACCGGTTT
1 AACCGGTTTTGAACCGGTTT
40240 TGACCGGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.36
Consensus pattern (20 bp):
AACCGGTTTTGAACCGGTTT
Found at i:40301 original size:13 final size:13
Alignment explanation
Indices: 40260--40290 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
40250 CGACCCGTTT
*
40260 ACCCGTTTACCCG
1 ACCCGTTGACCCG
40273 ACCCGTTGACCCG
1 ACCCGTTGACCCG
40286 ACCCG
1 ACCCG
40291 ACCCGTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.48, G:0.19, T:0.16
Consensus pattern (13 bp):
ACCCGTTGACCCG
Found at i:40370 original size:29 final size:29
Alignment explanation
Indices: 40309--40384 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
40299 ACCGTTGACC
*** *
40309 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
40338 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* *
40367 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
40385 TTTTTAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:50213 original size:21 final size:21
Alignment explanation
Indices: 50187--50226 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50177 CAGAACCCCA
*
50187 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
50208 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
50227 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:50256 original size:21 final size:21
Alignment explanation
Indices: 50208--50270 Score: 90
Period size: 21 Copynumber: 2.9 Consensus size: 21
50198 ATTCCCCTGT
50208 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCGGTT-CCC-TCAA
*
50231 AGGGGGAATCGGTTCCCTCAA
1 GGGGGGAATCGGTTCCCTCAA
*
50252 GGGGGGAATCGATTCCCTC
1 GGGGGGAATCGGTTCCCTC
50271 TGCACCAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 21 0.57
22 3 0.08
23 13 0.35
ACGTcount: A:0.19, C:0.25, G:0.35, T:0.21
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCTCAA
Found at i:60188 original size:7 final size:7
Alignment explanation
Indices: 60176--60250 Score: 89
Period size: 7 Copynumber: 10.3 Consensus size: 7
60166 ATTATGCTTG
60176 AAGAAAA
1 AAGAAAA
60183 AAGAAAAA
1 AAG-AAAA
60191 AAGAAAGA
1 AAGAAA-A
*
60199 AAAAAGAA
1 AAGAA-AA
60207 AAGAAAA
1 AAGAAAA
60214 AAGAAAA
1 AAGAAAA
60221 AAGAAAA
1 AAGAAAA
60228 AA-AAAA
1 AAGAAAA
*
60234 GAGAAAA
1 AAGAAAA
60241 AAGAAGAA
1 AAGAA-AA
60249 AA
1 AA
60251 AGGGGGGGTC
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
6 5 0.08
7 32 0.54
8 21 0.36
9 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:60199 original size:12 final size:12
Alignment explanation
Indices: 60182--60251 Score: 74
Period size: 12 Copynumber: 5.8 Consensus size: 12
60172 CTTGAAGAAA
60182 AAAGAAAAAAAG
1 AAAGAAAAAAAG
60194 AAAG-AAAAAAG
1 AAAGAAAAAAAG
*
60205 AAAAGAAAAAAGAAA
1 -AAAG-AAAAA-AAG
60220 AAAGAAAAAAA-
1 AAAGAAAAAAAG
60231 AAAGAGAAAAAAG
1 AAAGA-AAAAAAG
60244 -AAGAAAAA
1 AAAGAAAAA
60252 GGGGGGGTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
11 16 0.31
12 20 0.39
13 5 0.10
14 8 0.16
15 2 0.04
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:60200 original size:19 final size:19
Alignment explanation
Indices: 60176--60252 Score: 111
Period size: 19 Copynumber: 3.9 Consensus size: 19
60166 ATTATGCTTG
60176 AAGAAAAAAGAAAAAAAGA
1 AAGAAAAAAGAAAAAAAGA
60195 AAGAAAAAAGAAAAGAAA-A
1 AAGAAAAAAGAAAA-AAAGA
*
60214 AAGAAAAAAGAAAAAAAAA
1 AAGAAAAAAGAAAAAAAGA
60233 AGAGAAAAAAGAAGAAAAAG
1 A-AGAAAAAAGAA-AAAAAG
60253 GGGGGGTCAA
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
18 3 0.06
19 31 0.58
20 14 0.26
21 5 0.09
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (19 bp):
AAGAAAAAAGAAAAAAAGA
Found at i:61521 original size:83 final size:83
Alignment explanation
Indices: 61382--61652 Score: 497
Period size: 83 Copynumber: 3.3 Consensus size: 83
61372 AAACATTAAA
* *
61382 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGGGTTATCTGATCTGGTTTAGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
61447 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
61465 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
61530 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
* * *
61548 TGGAAGATGAATTTGCTAATAACATCTTTTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
1 TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
61613 AGAACCAATCATTGAATT
66 AGAACCAATCATTGAATT
61631 TGGAAGATGAATTTGCTCATAG
1 TGGAAGATGAATTTGCTCATAG
61653 TAGAAATAAG
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 181 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (83 bp):
TGGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
AGAACCAATCATTGAATT
Found at i:62781 original size:112 final size:114
Alignment explanation
Indices: 62460--63276 Score: 1168
Period size: 112 Copynumber: 7.4 Consensus size: 114
62450 TAGATTGACA
62460 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
62525 AGAACTTGTTCAACCTTTTGCCTGAAT-TCATCACTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
*
62573 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
62638 AGAACTTGTTCAACCTTTTGCCTGAAT-TCATCACTTGA-GGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
62685 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAG-AGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
62748 AGAACTTGTTCAACCTTTTGCCTGAAT-T-ATCATCTTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATATCATCA-CTTGATGGATCAGCT
*
62796 TTTCCAGAGAAAGTTCCTAATGAGAAGAACTCATCTGAAGAAGGAAG-AGAAGTTCAT-ATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
*
62859 AGAATTTGTTCAACCTTTTG-CTG-A-ATCATCA-TTGATGGATCAGCT
66 AGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
62904 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * *
62969 AGAACTTGTTC-ACCTTTTACCTGAAT-TCATCAATTGATGGATCAGCC
66 AGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
* *
63016 TTTCCAGAAAAAGTTCATAATGA-AATGAACTCATCTGAAGAAGGATGAAGAAG-TCATAATGAG
1 TTTCCAGAGAAAGTTCATAATGAGAA-GAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* * * *
63079 AAG-ATTTGTTCAACCTTTTG-CT-CA-A--ATCACTTGATAGATTAGCT
65 AAGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
**** * * *
63123 TTTCCAGTTCGAGTTCATAATAAGAAGAACTCATCTGAAGAATGATGAAGAAGGTTCATAATGAG
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA-GTTCATAATGAG
* * * *
63188 -AGAATTTGTTCAGA-TTTTTG-CTCAA-ATCCATCACTTGATGGATCAAC-
65 AAGAACTTGTTCA-ACCTTTTGCCTGAATAT-CATCACTTGATGGATCAGCT
* *
63235 TTTCTAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
63277 AGAACTTGTT
Statistics
Matches: 645, Mismatches: 35, Indels: 49
0.88 0.05 0.07
Matches are distributed among these distances:
107 58 0.09
108 65 0.10
109 50 0.08
110 85 0.13
111 113 0.18
112 157 0.24
113 117 0.18
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (114 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAACTTGTTCAACCTTTTGCCTGAATATCATCACTTGATGGATCAGCT
Found at i:63090 original size:331 final size:330
Alignment explanation
Indices: 62460--63276 Score: 1222
Period size: 331 Copynumber: 2.5 Consensus size: 330
62450 TAGATTGACA
62460 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
62525 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCTTTTCCAGAGAAGGTTCA
66 AGAATTTGTTCAACCTTTTG-CTGAA-TCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCA
62590 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT
129 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT
* * * *
62655 TTGCCTGAATTCATCACTTGAGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATC
194 TTACCTGAATTCATCAATTGAGGATCAGCCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATC
*
62720 TGAAGAAGAAGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATTATCATCTTG
259 TGAAGAAGAAGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG-CTCAA--ATCA-CTTG
*
62785 ATGGATCAGCT
320 ATAGATCAGCT
*
62796 TTTCCAGAGAAAGTTCCTAATGAGAAGAACTCATCTGAAGAAGGAAG-AGAAGTTCAT-ATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
62859 AGAATTTGTTCAACCTTTTGCTGAATCATCA-TTGATGGATCAGCTTTTCCAGAGAAAGTTCATA
66 AGAATTTGTTCAACCTTTTGCTGAATCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATA
62923 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC-ACCTTTT
131 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT
62987 ACCTGAATTCATCAATTGATGGATCAGCCTTTCCAGAAAAAGTTCATAATGA-AATGAACTCATC
196 ACCTGAATTCATCAATTGA-GGATCAGCCTTTCCAGAAAAAGTTCATAATGAGAA-GAACTCATC
* *
63051 TGAAGAAGGATGAAGAAG-TCATAATGAGAAG-ATTTGTTCAACCTTTTGCTCAAATCACTTGAT
259 TGAAGAA-GAAGAAG-AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCACTTGAT
*
63114 AGATTAGCT
322 AGATCAGCT
**** * * *
63123 TTTCCAGTTCGAGTTCATAATAAGAAGAACTCATCTGAAGAATGATGAAGAAGGTTCATAATGAG
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA-GTTCATAATGAG
* * * *
63188 -AGAATTTGTTCAGA-TTTTTGCTCAAATCCATCACTTGATGGATCAAC-TTTCTAGAGAAAGTT
65 AAGAATTTGTTCA-ACCTTTTGCT-GAAT-CATCACTTGATGGATCAGCTTTTCCAGAGAAAGTT
*
63250 CATAATGAGAAGAACTCATATGAAGAA
127 CATAATGAGAAGAACTCATCTGAAGAA
63277 AGAACTTGTT
Statistics
Matches: 445, Mismatches: 25, Indels: 27
0.90 0.05 0.05
Matches are distributed among these distances:
327 52 0.12
328 8 0.02
329 25 0.06
330 39 0.09
331 196 0.44
332 37 0.08
333 7 0.02
334 25 0.06
335 10 0.02
336 46 0.10
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (330 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAATTTGTTCAACCTTTTGCTGAATCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATA
ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT
ACCTGAATTCATCAATTGAGGATCAGCCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTG
AAGAAGAAGAAGAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCACTTGATAGAT
CAGCT
Found at i:63140 original size:219 final size:221
Alignment explanation
Indices: 62460--63276 Score: 1185
Period size: 219 Copynumber: 3.7 Consensus size: 221
62450 TAGATTGACA
62460 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
62525 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCTTTTCCAGAGAAGGTTCA
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCCTTTCCAGAGAAAGTTCA
*
62590 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT
131 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTT
62655 TTGCCTGAATTCATCACTTGA-GGATCAGCT
196 TTG-CT-AA---ATCACTTGATGGATCAGCT
62685 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAG-AGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
*
62748 AGAACTTGTTCAACCTTTTGCCTGAATT-ATCATCTTGATGGATCAGCTTTTCCAGAGAAAGTTC
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCA-CTTGATGGATCAGCCTTTCCAGAGAAAGTTC
*
62812 CTAATGAGAAGAACTCATCTGAAGAAGGAAG-AGAAGTTCAT-ATGAGAAGAATTTGTTCAACCT
130 ATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCT
*
62875 TTTGCTGAATCATCATTGATGGATCAGCT
195 TTTGCTAAATCA-C-TTGATGGATCAGCT
62904 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * *
62969 AGAACTTGTTC-ACCTTTTACCTGAATTCATCAATTGATGGATCAGCCTTTCCAGAAAAAGTTCA
66 AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCCTTTCCAGAGAAAGTTCA
*
63033 TAATGA-AATGAACTCATCTGAAGAAGGATGAAGAAG-TCATAATGAGAAG-ATTTGTTCAACCT
131 TAATGAGAA-GAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCT
* *
63095 TTTGCTCAAATCACTTGATAGATTAGCT
195 TTTGCT-AAATCACTTGATGGATCAGCT
**** * * *
63123 TTTCCAGTTCGAGTTCATAATAAGAAGAACTCATCTGAAGAATGATGAAGAAGGTTCATAATGAG
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA-GTTCATAATGAG
* * * * * *
63188 -AGAATTTGTTCAGA-TTTTTG-CTCAAATCCATCACTTGATGGATCA-ACTTTCTAGAGAAAGT
65 AAGAACTTGTTCA-ACCTTTTGCCT-GAATTCATCACTTGATGGATCAGCCTTTCCAGAGAAAGT
*
63249 TCATAATGAGAAGAACTCATATGAAGAA
128 TCATAATGAGAAGAACTCATCTGAAGAA
63277 AGAACTTGTT
Statistics
Matches: 546, Mismatches: 30, Indels: 38
0.89 0.05 0.06
Matches are distributed among these distances:
216 4 0.01
217 1 0.00
218 4 0.01
219 160 0.29
220 139 0.25
221 73 0.13
222 14 0.03
223 102 0.19
224 7 0.01
225 42 0.08
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (221 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAACTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCAGCCTTTCCAGAGAAAGTTCA
TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTT
TTGCTAAATCACTTGATGGATCAGCT
Done.