Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008193.1 Hibiscus syriacus cultivar Beakdansim tig00110812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1025831
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 5
Found at i:811460 original size:24 final size:24
Alignment explanation
Indices: 811426--811479 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
811416 CTGAAAAATC
811426 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
811450 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
811474 ATCAAA
1 ATCAAA
811480 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:811493 original size:24 final size:24
Alignment explanation
Indices: 811426--811493 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
811416 CTGAAAAATC
* * *
811426 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
811450 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
811474 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
811494 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:812408 original size:21 final size:21
Alignment explanation
Indices: 812384--812428 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
812374 AATCGAAGTA
812384 CGAATTAGGAAAATCGCAACG
1 CGAATTAGGAAAATCGCAACG
* * *
812405 CGAATTTGGGAAATCGCAATG
1 CGAATTAGGAAAATCGCAACG
812426 CGA
1 CGA
812429 TAGTCAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (21 bp):
CGAATTAGGAAAATCGCAACG
Found at i:813074 original size:25 final size:24
Alignment explanation
Indices: 813029--813082 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
813019 ATAAATTAAA
* *
813029 TTTTAAATATATATATCTATACCT
1 TTTTAAATATATATATATATACAT
* *
813053 TTTTCAATAATATATTTATATACAT
1 TTTTAAAT-ATATATATATATACAT
813078 TTTTA
1 TTTTA
813083 TAGGAAAAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTTAAATATATATATATATACAT
Found at i:816300 original size:2 final size:2
Alignment explanation
Indices: 816295--816341 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
816285 TGGTGTTGAA
816295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
816337 AT AT A
1 AT AT A
816342 CACTTTTGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:817421 original size:179 final size:179
Alignment explanation
Indices: 817121--817475 Score: 710
Period size: 179 Copynumber: 2.0 Consensus size: 179
817111 AAATACTGTA
817121 AACATTCTATGTAAACCAGACTGATAAATTAAAATAATTCGGATATGAACAAGCACAAATTTGCA
1 AACATTCTATGTAAACCAGACTGATAAATTAAAATAATTCGGATATGAACAAGCACAAATTTGCA
817186 CAAGGAATAAAGAAAATACTATTTTTCAATTGTGGAAGTGCTGGGATGAAATTATTATTTATTTT
66 CAAGGAATAAAGAAAATACTATTTTTCAATTGTGGAAGTGCTGGGATGAAATTATTATTTATTTT
817251 GCTGGATGTGTAACAAATGGATAGATCATCTGAATGCATAGGGGATATG
131 GCTGGATGTGTAACAAATGGATAGATCATCTGAATGCATAGGGGATATG
817300 AACATTCTATGTAAACCAGACTGATAAATTAAAATAATTCGGATATGAACAAGCACAAATTTGCA
1 AACATTCTATGTAAACCAGACTGATAAATTAAAATAATTCGGATATGAACAAGCACAAATTTGCA
817365 CAAGGAATAAAGAAAATACTATTTTTCAATTGTGGAAGTGCTGGGATGAAATTATTATTTATTTT
66 CAAGGAATAAAGAAAATACTATTTTTCAATTGTGGAAGTGCTGGGATGAAATTATTATTTATTTT
817430 GCTGGATGTGTAACAAATGGATAGATCATCTGAATGCATAGGGGAT
131 GCTGGATGTGTAACAAATGGATAGATCATCTGAATGCATAGGGGAT
817476 TCGGAGAACA
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
179 176 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (179 bp):
AACATTCTATGTAAACCAGACTGATAAATTAAAATAATTCGGATATGAACAAGCACAAATTTGCA
CAAGGAATAAAGAAAATACTATTTTTCAATTGTGGAAGTGCTGGGATGAAATTATTATTTATTTT
GCTGGATGTGTAACAAATGGATAGATCATCTGAATGCATAGGGGATATG
Found at i:827383 original size:45 final size:45
Alignment explanation
Indices: 827317--827403 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
827307 AAGATATGAT
*
827317 TCATGATTATCTCATCAAGTGTTGTGCAT-AAAAGTAATCATGACG
1 TCATGATTATCTCATCAAGTGTTGTGCATGAAAA-CAATCATGACG
* *
827362 TCATGATTATTTCATCCAGTGTTGTGCATGAAAACAATCATG
1 TCATGATTATCTCATCAAGTGTTGTGCATGAAAACAATCATG
827404 GTATTATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 34 0.89
46 4 0.11
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (45 bp):
TCATGATTATCTCATCAAGTGTTGTGCATGAAAACAATCATGACG
Found at i:842670 original size:29 final size:28
Alignment explanation
Indices: 842638--842695 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 28
842628 ATTAGAAATA
842638 AACTACCTAGTAGTTATCATTATCTATTT
1 AACTA-CTAGTAGTTATCATTATCTATTT
*
842667 -A--ACTAGTAGTTATCCTTATCTATTT
1 AACTACTAGTAGTTATCATTATCTATTT
842692 AACT
1 AACT
842696 TCTAAGAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
25 22 0.88
26 2 0.08
28 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (28 bp):
AACTACTAGTAGTTATCATTATCTATTT
Found at i:842672 original size:25 final size:25
Alignment explanation
Indices: 842644--842695 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
842634 AATAAACTAC
842644 CTAGTAGTTATCATTATCTATTTAA
1 CTAGTAGTTATCATTATCTATTTAA
*
842669 CTAGTAGTTATCCTTATCTATTTAA
1 CTAGTAGTTATCATTATCTATTTAA
842694 CT
1 CT
842696 TCTAAGAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (25 bp):
CTAGTAGTTATCATTATCTATTTAA
Found at i:846250 original size:10 final size:10
Alignment explanation
Indices: 846237--846261 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
846227 ATAAACGAAA
846237 GAACATAAAT
1 GAACATAAAT
846247 GAACATAAAT
1 GAACATAAAT
846257 GAACA
1 GAACA
846262 AATATAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (10 bp):
GAACATAAAT
Found at i:846268 original size:24 final size:24
Alignment explanation
Indices: 846200--846286 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 24
846190 GATTGGGCTA
**
846200 AACATAAATGAACGCACATAAACG
1 AACATAAATGAACAAACATAAACG
* *
846224 AACATAAACGAA-AGAACATAAATG
1 AACATAAATGAACA-AACATAAACG
* *
846248 AACATAAATGAACAAATATAAACA
1 AACATAAATGAACAAACATAAACG
*
846272 AAGATAAATG-ACAAA
1 AACATAAATGAACAAA
846287 TGTTGTTTGA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
23 5 0.10
24 46 0.88
25 1 0.02
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (24 bp):
AACATAAATGAACAAACATAAACG
Found at i:846519 original size:26 final size:22
Alignment explanation
Indices: 846458--846512 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 22
846448 TAAAAAATAT
*
846458 ATTTAAA-TAATAATAAAAGAG
1 ATTTAAAGTAAAAATAAAAGAG
846479 ATTTAAAGTAAAAATAAAGAGAAG
1 ATTTAAAGTAAAAATAAA-AG-AG
846503 ATTTTAAAGT
1 A-TTTAAAGT
846513 TGAAAATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 7 0.24
22 9 0.31
23 2 0.07
24 3 0.10
25 8 0.28
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (22 bp):
ATTTAAAGTAAAAATAAAAGAG
Found at i:846693 original size:31 final size:33
Alignment explanation
Indices: 846645--846714 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 33
846635 GTTTGGCAAG
* **
846645 TGGAAATTTTATCTTGG-TGGTGGCCAACTTAT
1 TGGAAATTTCATCTTGGTTGGTAACCAACTTAT
846677 TGGAAA-TTCATCTTGGTTGGTAACCAACTTAT
1 TGGAAATTTCATCTTGGTTGGTAACCAACTTAT
846709 TGGAAA
1 TGGAAA
846715 AATCTTTGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 9 0.26
32 25 0.74
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (33 bp):
TGGAAATTTCATCTTGGTTGGTAACCAACTTAT
Found at i:850972 original size:42 final size:41
Alignment explanation
Indices: 850900--850991 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 41
850890 GGCCTTGTGC
* *
850900 ATCGATGCACATTCAAGGCTGATCGGTGCACCT-TCATGGTGT
1 ATCGATGCACATTCAAGGATGATCGATGCA-CTGTCA-GGTGT
*
850942 ATCGATGCACATTC-AGGATGCATCGATGCACTGTTAGGTGT
1 ATCGATGCACATTCAAGGATG-ATCGATGCACTGTCAGGTGT
850983 ATCGATGCA
1 ATCGATGCA
850992 TTAAGCACAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
41 21 0.47
42 24 0.53
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (41 bp):
ATCGATGCACATTCAAGGATGATCGATGCACTGTCAGGTGT
Found at i:850988 original size:20 final size:20
Alignment explanation
Indices: 850900--850991 Score: 89
Period size: 21 Copynumber: 4.5 Consensus size: 20
850890 GGCCTTGTGC
850900 ATCGATGCACATTCAAGGCTG-
1 ATCGATGCACATTC-AGG-TGT
* *
850921 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCA-GGTGT
*
850942 ATCGATGCACATTCAGGATGC
1 ATCGATGCACATTCAGG-TGT
*
850963 ATCGATGCAC-TGTTAGGTGT
1 ATCGATGCACAT-TCAGGTGT
850983 ATCGATGCA
1 ATCGATGCA
850992 TTAAGCACAA
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
20 17 0.28
21 43 0.72
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (20 bp):
ATCGATGCACATTCAGGTGT
Found at i:856753 original size:18 final size:17
Alignment explanation
Indices: 856699--856747 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
856689 TTGGACCCTT
* *
856699 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
856717 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
856735 AGTGCATTCGATG
1 AGTGCA-TCGATG
856748 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:863570 original size:24 final size:24
Alignment explanation
Indices: 863539--863652 Score: 144
Period size: 24 Copynumber: 4.8 Consensus size: 24
863529 TTCGATTTGA
863539 ATTCTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACTTGG
* *
863563 ATTGTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACTTGG
*
863587 ATTCTGATGTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACTTGG
* *
863611 ATTCTGATCTGTTACTTGACCT-G
1 ATTCTGATCTGATACTTGACTTGG
*
863634 ATT-TGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
863653 CTGATTTATG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
22 14 0.18
23 5 0.06
24 58 0.74
25 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACTTGG
Found at i:868290 original size:24 final size:24
Alignment explanation
Indices: 868259--868372 Score: 144
Period size: 24 Copynumber: 4.8 Consensus size: 24
868249 TTCGATTTGA
868259 ATTCTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACTTGG
* *
868283 ATTGTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACTTGG
*
868307 ATTCTGATGTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACTTGG
* *
868331 ATTCTGATCTGTTACTTGACCT-G
1 ATTCTGATCTGATACTTGACTTGG
*
868354 ATT-TGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
868373 CTGATTTATG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
22 14 0.18
23 5 0.06
24 58 0.74
25 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACTTGG
Found at i:869623 original size:31 final size:33
Alignment explanation
Indices: 869539--869626 Score: 117
Period size: 33 Copynumber: 2.7 Consensus size: 33
869529 TGGATATTTT
* *
869539 ATCTTGGTTGGTGGCCAACTTATTGGAAAATTC
1 ATCTTGGTTGGTGGCCAACTTATTAGAAAAATC
* *
869572 ATCTTGGTTGGTGACAAACTTATTAGAAAAATC
1 ATCTTGGTTGGTGGCCAACTTATTAGAAAAATC
*
869605 -T-TTGGTAGGTGGCCAACTTATT
1 ATCTTGGTTGGTGGCCAACTTATT
869627 TTTCATCTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 18 0.38
32 1 0.02
33 29 0.60
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (33 bp):
ATCTTGGTTGGTGGCCAACTTATTAGAAAAATC
Found at i:873832 original size:17 final size:17
Alignment explanation
Indices: 873810--873847 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
873800 ATCGATCAAC
873810 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
873827 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
873844 GGTC
1 GGTC
873848 GGGTCAGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:873837 original size:7 final size:7
Alignment explanation
Indices: 873783--873820 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
873773 GGTCAAAGGA
873783 GGTCAAC
1 GGTCAAC
873790 GGTC-AC
1 GGTCAAC
*
873796 GGTCATC
1 GGTCAAC
*
873803 GATCAAC
1 GGTCAAC
873810 GGTCAAC
1 GGTCAAC
873817 GGTC
1 GGTC
873821 GGGTCGGGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (7 bp):
GGTCAAC
Found at i:881138 original size:19 final size:19
Alignment explanation
Indices: 881116--881170 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
881106 TCGGGTTGGG
881116 TCAGACCGGTCAAACCGAT
1 TCAGACCGGTCAAACCGAT
* *
881135 TCAGACCGGTCAGACCGGT
1 TCAGACCGGTCAAACCGAT
*
881154 TC-GAACAGGTCAAACCG
1 TCAG-ACCGGTCAAACCG
881171 GTTTCTAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 1 0.03
19 30 0.97
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.15
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGAT
Found at i:884376 original size:2 final size:2
Alignment explanation
Indices: 884369--884424 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
884359 TCAATAAAAG
884369 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
884411 CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT
884425 ATATATATAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:884429 original size:2 final size:2
Alignment explanation
Indices: 884424--884455 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
884414 TCTCTCTCTC
884424 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
884456 AAATTAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:893729 original size:22 final size:22
Alignment explanation
Indices: 893701--893745 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
893691 ATATTATGTT
*
893701 GAAAGTCAATTAAGGTGCTAAG
1 GAAAGTCAATTAAGGGGCTAAG
893723 GAAAGTCAATTAAGGGGCTAAG
1 GAAAGTCAATTAAGGGGCTAAG
893745 G
1 G
893746 GGGGGCACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.31, T:0.20
Consensus pattern (22 bp):
GAAAGTCAATTAAGGGGCTAAG
Found at i:901574 original size:30 final size:30
Alignment explanation
Indices: 901369--901557 Score: 337
Period size: 30 Copynumber: 6.3 Consensus size: 30
901359 GAAGGACCTA
*
901369 TCCAGAGGTCACAAAGA-CCAT-GGTAACTG
1 TCCAGAGGTCATAAAGATCC-TCGGTAACTG
901398 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
901428 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
901458 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
901488 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
901518 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
901548 TCCATAGGTC
1 TCCAGAGGTC
901558 CCGAAGAACC
Statistics
Matches: 156, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
29 17 0.11
30 139 0.89
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:902687 original size:21 final size:21
Alignment explanation
Indices: 902657--902701 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
902647 ATTCTGTCGT
* *
902657 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
902678 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
902699 TTG
1 TTG
902702 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:910161 original size:8 final size:8
Alignment explanation
Indices: 910148--910188 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
910138 CTCATTTTCA
910148 GAGAATTT
1 GAGAATTT
910156 GAGAATTT
1 GAGAATTT
*
910164 -AGAGTTT
1 GAGAATTT
*
910171 GGGAATTT
1 GAGAATTT
910179 GAGAATTT
1 GAGAATTT
910187 GA
1 GA
910189 AAGATTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:910494 original size:128 final size:128
Alignment explanation
Indices: 910261--911258 Score: 1639
Period size: 128 Copynumber: 7.9 Consensus size: 128
910251 ATCGGAGTAT
*
910261 TATTCACATGAAGGCGCGTTCCCGGGGGCGTGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
910326 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*
910389 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
* *
910454 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACATTAGATATATCAGTACCTATTATTTCTC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
***
910517 -AGGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
1 TA-TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
*
910581 ATTGCTCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
65 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* * *
910645 TATTCACATGAAGGCGCATCCCCGGGGGCGCGCCTTTCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
910710 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*
910773 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
*
910838 TTGCCCTATTATGTCACTCA------T-----ACACTAGATATATCAGTACCTATTATTTCTC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* ***
910890 AAGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
910955 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
911018 TATTCACATGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
*
911083 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTTCTC
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*** * * *
911144 -AGGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCATAGAATATGTTATC
1 TA-TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
911208 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
65 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
911259 AATCAGGTAA
Statistics
Matches: 810, Mismatches: 44, Indels: 32
0.91 0.05 0.04
Matches are distributed among these distances:
117 110 0.14
122 1 0.00
123 1 0.00
125 1 0.00
126 115 0.14
127 1 0.00
128 580 0.72
129 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (128 bp):
TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
Found at i:911061 original size:373 final size:374
Alignment explanation
Indices: 910261--911230 Score: 1660
Period size: 373 Copynumber: 2.6 Consensus size: 374
910251 ATCGGAGTAT
*
910261 TATTCACATGAAGGCGCGTTCCCGGGGGCGTGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
910326 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
910391 TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCATT
131 TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCATT
* *
910456 GCCCTATTATGTCACTCATGTCCCTCGGGGACATTAGATATATCAGTACCTATTATTTCTCAGGG
196 GCCCTATTATGTCACTCA------T----GACACTAGATATATCAGTACCTATTATTTCTCAAGG
910521 GACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCATTGC
251 GACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCATTGC
*
910586 TCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
316 CCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* * *
910645 TATTCACATGAAGGCGCATCCCCGGGGGCGCGCCTTTCATTATTTCGTCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
910710 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
910775 TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCATT
131 TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCATT
910840 GCCCTATTATGTCACTCAT-ACACTAGATATATCAGTACCTATTATTTCTCAAGGGACATGAAGG
196 GCCCTATTATGTCACTCATGACACTAGATATATCAGTACCTATTATTTCTCAAGGGACATGAAGG
910904 CGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCATTGCCCTATTATGT
261 CGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCATTGCCCTATTATGT
910969 CACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
326 CACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
911018 TATTCACATGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCA
1 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
*
911083 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTTCTC-A
66 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
*** * ** *
911145 GGGGACATGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCATAGAATATGTTATCAT
131 -TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCAT
911210 TGCCCTATTATGTCACTCATG
195 TGCCCTATTATGTCACTCATG
911231 TCCCTCGGGG
Statistics
Matches: 564, Mismatches: 20, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
370 1 0.00
371 98 0.17
373 255 0.45
378 1 0.00
384 209 0.37
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (374 bp):
TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCACTA
TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATCATT
GCCCTATTATGTCACTCATGACACTAGATATATCAGTACCTATTATTTCTCAAGGGACATGAAGG
CGCGTTCCCGGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATCATTGCCCTATTATGT
CACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
Found at i:911717 original size:33 final size:34
Alignment explanation
Indices: 911656--911755 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
911646 AAATTTAATG
*
911656 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
911690 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
911723 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
911756 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:912325 original size:21 final size:21
Alignment explanation
Indices: 912272--912361 Score: 121
Period size: 21 Copynumber: 4.3 Consensus size: 21
912262 TATGGTATAA
*
912272 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
912293 AA-CCTGGTGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
912314 AACCCTGCGGGCTCA-GAATGT
1 AACCCTGCGGGCT-AGGAATGT
*
912335 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
912356 AACCCT
1 AACCCT
912362 ACGGAGATGG
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
20 3 0.05
21 54 0.89
22 4 0.07
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:914162 original size:17 final size:17
Alignment explanation
Indices: 914137--914193 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
914127 ATTCTAAATA
*
914137 ATAATAATATATATTAT
1 ATAAAAATATATATTAT
914154 ATAAAAATATAATATT-T
1 ATAAAAATAT-ATATTAT
* * *
914171 ACATAAATATAT-TAAT
1 ATAAAAATATATATTAT
914187 ATAAAAA
1 ATAAAAA
914194 ATAATAACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 1 0.03
16 8 0.25
17 18 0.56
18 5 0.16
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAAAAATATATATTAT
Found at i:914224 original size:33 final size:34
Alignment explanation
Indices: 914156--914225 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
914146 TATATTATAT
* *
914156 AAAAATATAATATTTACATAAATATATTAATATA
1 AAAAATATAATATTTACATAAATATACTAACATA
914190 AAAAATAATAACTATTTA-A-AAA-ATACTAACATA
1 AAAAAT-ATAA-TATTTACATAAATATACTAACATA
914223 AAA
1 AAA
914226 TAAATTTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
33 12 0.38
34 9 0.28
35 5 0.16
36 6 0.19
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (34 bp):
AAAAATATAATATTTACATAAATATACTAACATA
Found at i:915507 original size:23 final size:23
Alignment explanation
Indices: 915472--915528 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
915462 ATCAAGCACA
*
915472 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
* *
915495 ATAATGTAATAGGTAGCGTTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
915518 ATAATAAAATA
1 ATAATATAATA
915529 CGCATTTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.37
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:915590 original size:87 final size:87
Alignment explanation
Indices: 915444--915606 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 87
915434 TATGTTATAT
* * * * *
915444 CATTTAACTGGAAATATTATCAAGCACAATAATATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTACCAAACACAATAACATATTAGGTAACGCTTATATAATGTAATAGGT
*
915509 AGCGTTTATATAATAAAATACG
66 AGCGCTTATATAATAAAATACG
*
915531 CATTTAACCGGAAATATTACCAAATACAATAACATATTAGGTAACGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTACCAAACACAATAACATATTAGGTAACGCTTATATAATGTAATAGGT
915596 AGCGCTTATAT
66 AGCGCTTATAT
915607 TGACCTATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (87 bp):
CATTTAACCGGAAATATTACCAAACACAATAACATATTAGGTAACGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATACG
Found at i:919470 original size:15 final size:15
Alignment explanation
Indices: 919452--919487 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
919442 TAATTTTGGT
919452 TCGATATATTTGGGG
1 TCGATATATTTGGGG
919467 TCGATATATTTGGGG
1 TCGATATATTTGGGG
919482 TCGATA
1 TCGATA
919488 CTTTTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.08, G:0.31, T:0.39
Consensus pattern (15 bp):
TCGATATATTTGGGG
Found at i:919811 original size:197 final size:197
Alignment explanation
Indices: 919467--919851 Score: 587
Period size: 197 Copynumber: 1.9 Consensus size: 197
919457 ATATTTGGGG
* * * *
919467 TCGATATATTTGGGGTCGATACTTTTATAAATGTACGACACTTTATGCGTGGACATTGTTTGGTA
1 TCGATATATTTGGGGTCGATACTTTAATAAATGTACGACACTTTATGCGTGCACATAGTTTGGAA
* *
919532 TTCATTATCGACATAAAGTATCGACACAAATGCAAAAAGTATCGATACATTACGTAGACCTATTT
66 TTCATTATCGACAAAAAGTATCGACACAAATGAAAAAAGTATCGATACATTAC-TAGACCTATTT
*
919597 GCTCATAAAATCGGTAAATTTAAA-CGGTTACATTGTAAAGTGACCTATTACATTATAATTTTCG
130 GCTCATAAAACCGGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTTTCG
919661 GTC
195 GTC
*
919664 TCGATGTATTTGGGGTCGATACTTTAATAAATGTATCGACACTTTATGCGTGCACATAGTTTGGG
1 TCGATATATTTGGGGTCGATACTTTAATAAATGTA-CGACACTTTATGCGTGCACATAGTTT-GG
* * * * *
919729 AATTCATTATGGATAAAAAGTATCGACACAAAT-AAATAAAGTGTCGATACTTTA-TATACCTAT
64 AATTCATTATCGACAAAAAGTATCGACACAAATGAAA-AAAGTATCGATACATTACTAGACCTAT
*
919792 TTTCTCATAAAACCGGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATA
128 TTGCTCATAAAACCGGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATA
919852 TCTATGTTTC
Statistics
Matches: 170, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
197 65 0.38
198 59 0.35
199 46 0.27
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (197 bp):
TCGATATATTTGGGGTCGATACTTTAATAAATGTACGACACTTTATGCGTGCACATAGTTTGGAA
TTCATTATCGACAAAAAGTATCGACACAAATGAAAAAAGTATCGATACATTACTAGACCTATTTG
CTCATAAAACCGGTAAATTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAATTTTCGG
TC
Found at i:920165 original size:196 final size:198
Alignment explanation
Indices: 919621--920832 Score: 1022
Period size: 194 Copynumber: 6.3 Consensus size: 198
919611 TAAATTTAAA
* * * * * * * ** *
919621 CGGTTACATTGTAAAGTGACCTATTACATTATAAT-TTTCG-GTCTCGATGTATTTGGGGTCGAT
1 CGGTTACATTGTTAATTTACCTATTACATTAT-ATCTAT-GTGTTTCGATGTTTTTAGTATCGAC
* * * * * * *
919684 ACTT-TAATAAATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGATAAAA
64 ACTTGTTATAAATGTATCGA-ACTTTGT-CGTGCACTTGGTTTGGAAAATACATTATGGACAAAA
*** * **
919747 AGTATCGACAC-AAATAAATAAAGTGTCGATACTTTA--TATACCTAT-TTTCTCATAAAACCGG
127 AGTATCGACACTTGTTGAAT-TTGTGTCGATACTTTATGTATA-C-ATGTTTCTCAT-AAACCGG
** *
919808 TAAATTTAAAC
188 TGTATTTAGAC
* * *
919819 CGGTTACATTGTAAAGTGACCTATTACATTATATCTA--TGTTTCGA---TTTTAGTATCGACAC
1 CGGTTACATTGTTAATTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
919879 TTGTTATAAATGTATCGATACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
66 TTGTTATAAATGTATCGA-ACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
* *
919944 ATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTGCATTT
130 ATCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTGTATTT
*
920009 AGGC
195 AGAC
*
920013 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
1 CGGTTACATTGTTAATTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
920078 TTGTTATAAATGTATCG-ACTTTGTCGTGCACTTGGTTT-GAAAATACATTATGGACAAAAAGTA
66 TTGTTATAAATGTATCGAACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTA
*
920141 TCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACCTAT-TTTCTCAAAAACCGGTGTATT
131 TCGACACTTGTTGAATTTGTGTCGATACTTTATGTATA-C-ATGTTTCTCATAAACCGGTGTATT
*
920205 TAGGC
194 TAGAC
* * * *
920210 CGGTTACA-TGTTATTTTATCTATTACATTATATC--TGTGTTTCGAT-TTTTTTGTATCGACAT
1 CGGTTACATTGTTAATTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
** ** * ** * *** * * ***
920271 TTGTCGTGCA-CT-T-G-A-TTTG--G-AAAATACATTATGGACAAA-A-AGTATCGAC-ACTTG
66 TTGTTATAAATGTATCGAACTTTGTCGTGCACTTGGTT-TGGA-AAATACATTATGGACAAAAAG
* * *
920325 T-T-G-CATTTGTGTCGATACTTTATGT--ATAC-------AT--AT-TTTCTCATAAAACTGGT
129 TATCGACACTTGT-T-GA-A-TTTGTGTCGATACTTTATGTATACATGTTTCTCAT-AAACCGGT
** * *
920375 AAATTTAAAT
189 GTATTTAGAC
* * * * * *
920385 CGGTTATATTGTAAAGTGACCTA-TACATT-TAAT-TATAG-GTTTCGATGTATTT-GGATCGAC
1 CGGTTACATTGTTAATTTACCTATTACATTAT-ATCTAT-GTGTTTCGATGTTTTTAGTATCGAC
* ** *
920445 ACATGTTATAAATGTATCGACACTTT-TTTTGCA-TTGGTTTGGAAACTACATTATGGACAAAAA
64 ACTTGTTATAAATGTATCGA-ACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAA
* *
920508 GTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTCTCATAAACCGGTGTAT
128 GTATCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTGTAT
**
920573 TTAGGT
193 TTAGAC
* *
920579 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTTAGTATCGACAC
1 CGGTTACATTGTTAATTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
* * *
920644 TTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTCTAGACAAAAAGT
66 TTGTTATAAATGTATCGA-ACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
* * * *
920709 ATCGACACTTGTT-AGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAAAAACCAGTTTAT
130 ATCGACACTTGTTGA-ATTTGTGTCGATACTTTATGTATACATG-TTTCTCATAAACCGGTGTAT
*
920773 TTAGAT
193 TTAGAC
* *
920779 TGGTTACATTGTTAATTTACTTATTACATTATAAT-TATGTGTTTCGATGTTTTT
1 CGGTTACATTGTTAATTTACCTATTACATTAT-ATCTATGTGTTTCGATGTTTTT
920833 GTTATAAATG
Statistics
Matches: 828, Mismatches: 120, Indels: 130
0.77 0.11 0.12
Matches are distributed among these distances:
174 10 0.01
175 27 0.03
176 31 0.04
177 6 0.01
178 3 0.00
179 1 0.00
181 3 0.00
182 8 0.01
183 22 0.03
184 7 0.01
185 13 0.02
186 10 0.01
187 21 0.03
188 3 0.00
189 7 0.01
190 2 0.00
191 1 0.00
192 3 0.00
193 46 0.06
194 153 0.18
195 29 0.04
196 121 0.15
197 88 0.11
198 40 0.05
199 102 0.12
200 69 0.08
201 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (198 bp):
CGGTTACATTGTTAATTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
TTGTTATAAATGTATCGAACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTA
TCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTGTATTTA
GAC
Found at i:920594 original size:370 final size:372
Alignment explanation
Indices: 919889--920647 Score: 1090
Period size: 370 Copynumber: 2.0 Consensus size: 372
919879 TTGTTATAAA
* *
919889 TGTATCGATACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
1 TGTATCGACA-TTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
* ** **
919954 GTTGGATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTGCATTTAGGCCGGTTA
65 GTTGCATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTAAATTTAAACCGGTTA
* ** * * * *
920019 CATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACACTTGTTA
130 CATTGTAAAGTGACCTATTACATTATATCTATGTGTTTCGATGTATTTAGGATCGACACATGTTA
920084 TAAATGTATCGACTTTGTCGTGCACTTGGTTTGAAAATACATTATGGACAAAAAGTATCGACACT
195 TAAATGTATCGACTTTGTCGTGCACTTGGTTTGAAAATACATTATGGACAAAAAGTATCGACACT
920149 TGTTGAATTTGTGTCGATACTTTATGTATACCTATTTTCTCAAAAACCGGTGTATTTAGGCCGGT
260 TGTTGAATTTGTGTCGATACTTTATGTATACCTATTTTCTCAAAAACCGGTGTATTTAGGCCGGT
* *
920214 TACATGTTATTTTATCTATTACATTATATC-TGTGTTTCGAT-TTTTT
325 TACATGTTATTTTACCTATTACATTATATCATGTGTTTCGATGATTTT
920260 TGTATCGACATTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
1 TGTATCGACATTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
* * *
920325 TTGCATTTGTGTCGATACTTTATGTATACATATTTTCTCATAAAACTGGTAAATTTAAATCGGTT
66 TTGCATTTGTGTCGATACTTTATGTATACAT-GTTTCTCAT-AAACCGGTAAATTTAAACCGGTT
*
920390 ATATTGTAAAGTGACCTA-TACATT-TAAT-TATAG-GTTTCGATGTATTT-GGATCGACACATG
129 ACATTGTAAAGTGACCTATTACATTAT-ATCTAT-GTGTTTCGATGTATTTAGGATCGACACATG
** *
920450 TTATAAATGTATCGACACTTT-TTTTGCA-TTGGTTTGGAAACTACATTATGGACAAAAAGTATC
192 TTATAAATGTATCG--ACTTTGTCGTGCACTTGGTTT-GAAAATACATTATGGACAAAAAGTATC
* *
920513 GACACTTGTTGGATTTGTGTCGATACTTTATGTATA-CT-TGTTTCTCATAAACCGGTGTATTTA
254 GACACTTGTTGAATTTGTGTCGATACTTTATGTATACCTAT-TTTCTCAAAAACCGGTGTATTTA
*
920576 GGTCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTT
318 GGCCGGTTACA-TGTTATTTTACCTATTACATTATATC-ATGTGTTTCGATGATTTT
* *
920633 AGTATCGACACTTGT
1 TGTATCGACATTTGT
920648 TATAAATGTA
Statistics
Matches: 348, Mismatches: 28, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
368 1 0.00
369 66 0.19
370 192 0.55
371 31 0.09
372 41 0.12
373 17 0.05
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (372 bp):
TGTATCGACATTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGACACTTG
TTGCATTTGTGTCGATACTTTATGTATACATGTTTCTCATAAACCGGTAAATTTAAACCGGTTAC
ATTGTAAAGTGACCTATTACATTATATCTATGTGTTTCGATGTATTTAGGATCGACACATGTTAT
AAATGTATCGACTTTGTCGTGCACTTGGTTTGAAAATACATTATGGACAAAAAGTATCGACACTT
GTTGAATTTGTGTCGATACTTTATGTATACCTATTTTCTCAAAAACCGGTGTATTTAGGCCGGTT
ACATGTTATTTTACCTATTACATTATATCATGTGTTTCGATGATTTT
Found at i:920719 original size:199 final size:197
Alignment explanation
Indices: 920260--920903 Score: 806
Period size: 196 Copynumber: 3.3 Consensus size: 197
920250 TCGATTTTTT
* *
920260 TGTATCGACA-TTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
1 TGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
* * * *
920324 GTTGCATTTGTGTCGATACTTTATGTATACATAT-TTTCTCATAAAACTGGTAAATTTAAATCGG
66 GTTGGATTTGTGTCGATACTTTATGTATAC-T-TGTTTCTCAT-AAACCGGTATATTTAGATCGG
* * * *
920388 TTATATTGTAAAGTGACCTA-TACATT-TAATTATAG-GTTTCGATGTATTTGGATCGACACATG
128 TTACATTGTTAATTTACCTATTACATTATAATTAT-GTGTTTCGATGT-TTTGGATCGACACATG
920450 TTATAAA
191 TTATAAA
* *
920457 TGTATCGACACTTTTT-TTGCA-TTGGTTTGGAAACTACATTATGGACAAAAAGTATCGACACTT
1 TGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
* *
920520 GTTGGATTTGTGTCGATACTTTATGTATACTTGTTTCTCATAAACCGGTGTATTTAGGTCGGTTA
66 GTTGGATTTGTGTCGATACTTTATGTATACTTGTTTCTCATAAACCGGTATATTTAGATCGGTTA
* * *
920585 CATTGTTATTTTACCTATTACATTAT-ATCTATGTGTTTCGATGATTTTAGTATCGACACTTGTT
131 CATTGTTAATTTACCTATTACATTATAAT-TATGTGTTTCGATG-TTTT-GGATCGACACATGTT
920649 ATAAA
193 ATAAA
* *
920654 TGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTCTAGACAAAAAGTATCGACACTT
1 TGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
* * * * *
920719 GTTAGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAAAAACCAGTTTATTTAGATTGGTT
66 GTTGGATTTGTGTCGATACTTTATGTATACTTG-TTTCTCATAAACCGGTATATTTAGATCGGTT
*
920784 ACATTGTTAATTTACTTATTACATTATAATTATGTGTTTCGATG-TTT---T-------TGTTAT
130 ACATTGTTAATTTACCTATTACATTATAATTATGTGTTTCGATGTTTTGGATCGACACATGTTAT
920838 AAA
195 AAA
* * *
920841 TGTATCGACAATTTTCTCGTGCACTTGGTTTGG-AAATACATTATGGACAACATGTATCGACAC
1 TGTATCGACACTTTT-TCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACAC
920904 GAATGAATAA
Statistics
Matches: 400, Mismatches: 34, Indels: 36
0.85 0.07 0.08
Matches are distributed among these distances:
187 49 0.12
188 17 0.04
194 33 0.08
195 18 0.05
196 85 0.21
197 49 0.12
198 11 0.03
199 71 0.18
200 65 0.16
201 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (197 bp):
TGTATCGACACTTTTTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
GTTGGATTTGTGTCGATACTTTATGTATACTTGTTTCTCATAAACCGGTATATTTAGATCGGTTA
CATTGTTAATTTACCTATTACATTATAATTATGTGTTTCGATGTTTTGGATCGACACATGTTATA
AA
Found at i:921086 original size:18 final size:18
Alignment explanation
Indices: 921037--921095 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
921027 TGGATGGATT
*
921037 AAATTTAAATTCAAACTC
1 AAATTCAAATTCAAACTC
* * * *
921055 AAACTCAAACTCAAATTG
1 AAATTCAAATTCAAACTC
*
921073 AAATTGAAATTCAAACTC
1 AAATTCAAATTCAAACTC
*
921091 TAATT
1 AAATT
921096 ATAAATGAAA
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATTCAAATTCAAACTC
Found at i:921095 original size:12 final size:12
Alignment explanation
Indices: 921043--921095 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
921033 GATTAAATTT
921043 AAATTCAAACTC
1 AAATTCAAACTC
*
921055 AAACTCAAACTC
1 AAATTCAAACTC
* * *
921067 AAATTGAAATTG
1 AAATTCAAACTC
921079 AAATTCAAACTC
1 AAATTCAAACTC
*
921091 TAATT
1 AAATT
921096 ATAAATGAAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATTCAAACTC
Found at i:921104 original size:24 final size:24
Alignment explanation
Indices: 921059--921106 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
921049 AAACTCAAAC
*
921059 TCAAACTCAAATTGAAATTGAAAT
1 TCAAACTCAAATTGAAAATGAAAT
*
921083 TCAAACTCTAATT-ATAAATGAAAT
1 TCAAACTCAAATTGA-AAATGAAAT
921107 GAAAATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (24 bp):
TCAAACTCAAATTGAAAATGAAAT
Found at i:922365 original size:6 final size:6
Alignment explanation
Indices: 922355--922388 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
922345 CTTGTTTGGA
* *
922355 TCATCA TCATCT TCATCT TCATCG TCATCT TCAT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCAT
922389 TGACCGCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.21, C:0.32, G:0.03, T:0.44
Consensus pattern (6 bp):
TCATCT
Found at i:923201 original size:2 final size:2
Alignment explanation
Indices: 923194--923231 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
923184 GTTTCCGGAG
923194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
923232 CCTTCTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:923586 original size:15 final size:15
Alignment explanation
Indices: 923562--923603 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
923552 AGGAGGTTGT
923562 GGTTGAGAAGAGCTG
1 GGTTGAGAAGAGCTG
* *
923577 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGCTG
923592 GGTTGAGAAGAG
1 GGTTGAGAAGAG
923604 ATTTGAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.02, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTTGAGAAGAGCTG
Found at i:924280 original size:199 final size:199
Alignment explanation
Indices: 923970--925229 Score: 1909
Period size: 199 Copynumber: 6.3 Consensus size: 199
923960 TTGCAAAATG
* * * * *
923970 ACCTATTACATTAAAATTTTGGGTTTCGATGTTCTTAGGATCGATACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
*
924035 CACTTTTTCGTGCACTTGGTTTAGAAATGCATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
*
924100 GTGTCGATACTTTTT-TACACTTGTTTTCTAAAAAAACTAGTATATTTAGACCGGTTACATTGTT
131 GTGTCGATACTTTTTGTACACCTGTTTTCT-AAAAAACTAGTATATTTAGACCGGTTACATTGTT
924164 AATTT
195 AATTT
* *
924169 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGTATAGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* * * *
924234 TACTTATTCGTGCACTTGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * * * *
924299 TTGTTGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACATTGTTA
131 GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAGTATATTTAGACCGGTTACATTGTTA
924364 ATTT
196 ATTT
* * *
924368 ACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* *
924433 CACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGACCAAAAGTATGGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * * * * *
924498 TTGTTGATA-TTTTTGTACACATGTTTTCTCAAAAAC-CGATATATTTAGACTGGTTACATTGTT
131 GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAG-TATATTTAGACCGGTTACATTGTT
924561 AATTT
195 AATTT
* *
924566 ACCTATTACATTATAATTATGAGTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* * * *
924631 CACTTTTTCGTGCACTAGGTTTAGAAATACATTTTGGATCAAAAGTATCAACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * * *
924696 GTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAAC-CGATATATTTAGACTGGTTACACTGTT
131 GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAG-TATATTTAGACCGGTTACATTGTT
924760 AATTT
195 AATTT
924765 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* * * *
924830 CACTTTTTCATGTACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGCTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * ** *
924895 GTGTCGATATTTTTTGTACACCTGTTTTCT-CAAAACCGGTATATTTAGACAGGTTACATTGTTA
131 GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAGTATATTTAGACCGGTTACATTGTTA
*
924959 ACTT
196 ATTT
*
924963 ACCTATTATATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* *
925028 CACCTTTTCGTACACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * * * **
925093 GTGTCGATATTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGACTACATTGTTA
131 GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAGTATATTTAGACCGGTTACATTGTTA
925158 ATTT
196 ATTT
* * *
925162 ACCTATTACATTATAATTATGGGTTTCAATGTTTTTGGGATCGATATTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
925227 CAC
66 CAC
925230 ATAAGTTTAT
Statistics
Matches: 979, Mismatches: 77, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
197 1 0.00
198 364 0.37
199 601 0.61
200 13 0.01
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (199 bp):
ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
GTGTCGATACTTTTTGTACACCTGTTTTCTAAAAAACTAGTATATTTAGACCGGTTACATTGTTA
ATTT
Found at i:924689 original size:397 final size:397
Alignment explanation
Indices: 923970--925229 Score: 1986
Period size: 397 Copynumber: 3.2 Consensus size: 397
923960 TTGCAAAATG
* * * *
923970 ACCTATTACATTAAAATTTTGGGTTTCGATGTTCTTAGGATCGATACTTGTTATAAATGTATCGA
1 ACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
*
924035 CACTTTTTCGTGCACTTGGTTTAGAAATGCATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * * * *
924100 GTGTCGATACTTTTT-TACACTTGTTTTCTAAAAAAACTAGTATATTTAGACCGGTTACATTGTT
131 GTGTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGA-TATATTTAGACAGGTTACATTGTT
*
924164 AATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGT
195 AATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGT
* * *
924229 ATAGATACTTATTCGTGCACTTGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGTTT
260 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGAC-AAAAGTATCGACACTTGTTT
* *
924294 TATTTTTGTTGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACAT
324 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACAT
924359 TGTTAATTT
389 TGTTAATTT
* *
924368 ACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGA
1 ACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* *
924433 CACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGACCAAAAGTATGGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * *
924498 TTGTTGATA-TTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACTGGTTACATTGTTA
131 GTGTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACAGGTTACATTGTTA
* *
924562 ATTTACCTATTACATTATAATTATGAGTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTA
196 ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
* * *
924627 TCGACACTTTTTCGTGCACTAGGTTTAGAAATACATTTTGGATCAAAAGTATCAACACTTGTTTT
261 TCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGA-CAAAAGTATCGACACTTGTTTT
** * * *
924692 ATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGATATATTTAGACTGGTTACACT
325 ATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACATT
924757 GTTAATTT
390 GTTAATTT
*
924765 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
1 ACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
* * * *
924830 CACTTTTTCATGTACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGCTTTATTT
66 CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
* * *
924895 GTGTCGATATTTTTTGTACACCTGTTTTCTC-AAAACCGGTATATTTAGACAGGTTACATTGTTA
131 GTGTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACAGGTTACATTGTTA
* *
924959 ACTTACCTATTATATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
196 ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
* * *
925024 TCGACACCTTTTCGTACACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTT
261 TCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGA-CAAAAGTATCGACACTTGTTTT
* **
925089 ATTTGTGTCGATATTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGACTACATT
325 ATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACATT
925154 GTTAATTT
390 GTTAATTT
* * * *
925162 ACCTATTACATTATAATTATGGGTTTCAATGTTTTTGGGATCGATATTTGTTATAAATGTATCGA
1 ACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
925227 CAC
66 CAC
925230 ATAAGTTTAT
Statistics
Matches: 794, Mismatches: 65, Indels: 7
0.92 0.08 0.01
Matches are distributed among these distances:
397 623 0.78
398 171 0.22
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (397 bp):
ACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGA
CACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
GTGTCGATACTTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACAGGTTACATTGTTA
ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
TCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGACAAAAGTATCGACACTTGTTTTA
TTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACATTG
TTAATTT
Found at i:925109 original size:596 final size:596
Alignment explanation
Indices: 923970--925229 Score: 2002
Period size: 596 Copynumber: 2.1 Consensus size: 596
923960 TTGCAAAATG
* * * *
923970 ACCTATTACATTAAAATTTTGGGTTTCGATGTTCTTAGGATCGATACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTGTTATAAATGTATCGA
* * *
924035 CACTTTTTCGTGCACTTGGTTTAGAAATGCATTCTGGACCAAAAGTATCGACACTTGTTTTATTT
66 CACTTTTTCGTGCACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCAACACTTGTTTTATTT
* * *
924100 GTGTCGATACTTTTTTACACTTGTTTTCTAAAAAAACTAGTATATTTAGACCGGTTACATTGTTA
131 GTGTCGATACTTTTTTACACCTGTTTTCTAAAAAAACGAGTATATTTAGACCGGTTACACTGTTA
924165 ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGTA
196 ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGTA
* * * *
924230 TAGATACTTATTCGTGCACTTGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGTTTT
261 TAGACACTTATTCATGCACTAGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGCTTT
* * ** *
924295 ATTTTTGTTGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGGTTACATT
326 ATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACATT
* *
924360 GTTAATTTACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAA
391 GTTAACTTACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAA
* * *
924425 TGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTATGGACCAAAAGTATGGACACTTG
456 TGTATCGACACCTTTTCGTACACTTGGTTTAGAAATACATTATGGACCAAAAGTATCGACACTTG
* * * **
924490 TTTTATTTTTGTTGATATTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACTGGTTAC
521 TTTTATTTGTGTCGATATTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACCGACTAC
924555 ATTGTTAATTT
586 ATTGTTAATTT
* * *
924566 ACCTATTACATTATAATTATGAGTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTGTTATAAATGTATCGA
* *
924631 CACTTTTTCGTGCACTAGGTTTAGAAATACATTTTGGATCAAAAGTATCAACACTTGTTTTATTT
66 CACTTTTTCGTGCACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCAACACTTGTTTTATTT
* * *
924696 GTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGA-TATATTTAGACTGGTTACACTGTT
131 GTGTCGATACTTTTT-TACACCTGTTTTCTAAAAAAACGAGTATATTTAGACCGGTTACACTGTT
*
924760 AATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGT
195 AATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGT
* * * * *
924825 ATCGACACTTTTTCATGTACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGCTT
260 ATAGACACTTATTCATGCACTAGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGCTT
*
924890 TATTTGTGTCGATATTTTTTGTACACCTGTTTTCTC-AAAACCGGTATATTTAGACAGGTTACAT
325 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACAT
* * *
924954 TGTTAACTTACCTATTATATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
390 TGTTAACTTACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAA
*
925019 ATGTATCGACACCTTTTCGTACACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTT
455 ATGTATCGACACCTTTTCGTACACTTGGTTTAGAAATACATTATGGACCAAAAGTATCGACACTT
* ** *
925084 GTTTTATTTGTGTCGATATTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCGACT
520 GTTTTATTTGTGTCGATA-TTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACCGACT
925149 ACATTGTTAATTT
584 ACATTGTTAATTT
* *
925162 ACCTATTACATTATAATTATGGGTTTCAATGTTTTTGGGATCGATATTTGTTATAAATGTATCGA
1 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTGTTATAAATGTATCGA
925227 CAC
66 CAC
925230 ATAAGTTTAT
Statistics
Matches: 605, Mismatches: 57, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
595 162 0.27
596 423 0.70
597 20 0.03
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (596 bp):
ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTGTTATAAATGTATCGA
CACTTTTTCGTGCACTAGGTTTAGAAATACATTCTGGACCAAAAGTATCAACACTTGTTTTATTT
GTGTCGATACTTTTTTACACCTGTTTTCTAAAAAAACGAGTATATTTAGACCGGTTACACTGTTA
ATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATAGACACTTGTTATAAATGTA
TAGACACTTATTCATGCACTAGGTTTAGAAATACATTATGGACAAAAAGTATCGACACTTGCTTT
ATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACAGGTTACATT
GTTAACTTACCTATTACATTAAAATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAA
TGTATCGACACCTTTTCGTACACTTGGTTTAGAAATACATTATGGACCAAAAGTATCGACACTTG
TTTTATTTGTGTCGATATTTTTGTACACATGTTTTCTCAAAAACCGATATATTTAGACCGACTAC
ATTGTTAATTT
Found at i:925625 original size:19 final size:19
Alignment explanation
Indices: 925601--925648 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
925591 TTACATTCAC
925601 ATACAAAATTATAAACCGT
1 ATACAAAATTATAAACCGT
* *
925620 ATAC-AAATTATAAATCTT
1 ATACAAAATTATAAACCGT
925638 ATACAAAATTA
1 ATACAAAATTA
925649 ACCCTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAACCGT
Found at i:929166 original size:19 final size:19
Alignment explanation
Indices: 929138--929270 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 19
929128 CATTTATACA
* *
929138 ACCTAAAATATCATTTTCT
1 ACCTATAATATTATTTTCT
*
929157 ACCTATAATATTATATTATAT
1 ACCTATAATATTAT-TT-TCT
* * *
929178 ACAGATATCCATATTTATTTTCC
1 AC--CTAT-AATA-TTATTTTCT
* *
929201 ACCTAGAATATTACTTTCT
1 ACCTATAATATTATTTTCT
* * * *
929220 ACATGTAATATCATTTTTT
1 ACCTATAATATTATTTTCT
* *
929239 ACCTATAATATAATTTTTT
1 ACCTATAATATTATTTTCT
*
929258 GCCTATAATATTA
1 ACCTATAATATTA
929271 AATAAAAGTA
Statistics
Matches: 85, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
19 59 0.69
20 5 0.06
21 6 0.07
23 6 0.07
24 5 0.06
25 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.03, T:0.46
Consensus pattern (19 bp):
ACCTATAATATTATTTTCT
Found at i:930053 original size:182 final size:180
Alignment explanation
Indices: 929738--930515 Score: 987
Period size: 182 Copynumber: 4.3 Consensus size: 180
929728 CGCTTTACCG
* *
929738 GTTTTGTCATATTTTTACCTGTTATATTGTTATCGATCGATACATTTTTTTAAAGTATCGACACT
1 GTTTTGTCATATTTTTA-CTATTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* * * *
929803 TTATATGTGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATCG
65 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGAAACTTATATTAAATTATCG
* * * *
929868 ACACTCTCAACATATCCGATAGTTCTTTATCGGTTTTGACATTTTGAGACCA
130 ACACTTTCAACATATCCGGTA-TTCTTTACCGGTTTTGTCATTTTGAGACCA
* ** *
929920 GTTTTGTCATATTTTTAGCTATTATATTGTTATGGATCGATATATTTTCATAAAGTATCTACACT
1 GTTTTGTCATATTTTTA-CTATTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* * *
929985 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGAAACTTATTTTAAATTGTC
65 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGAAACTTATATTAAATTATC
** * * **
930049 GACACTTTCAACATATCCGGTAGCGCTTTACCGGATTTGTCATTTTGGGACTG
129 GACACTTTCAACATATCCGGTA-TTCTTTACCGGTTTTGTCATTTTGAGACCA
*
930102 GTTTTGTCATATTTTTAGCTATTATATTGCTATGGATCGATACATTTTTTTAAAGTATCGACACT
1 GTTTTGTCATATTTTTA-CTATTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* *
930167 TTATAGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAAAAT-TC-AATACTTATATTAAATTA
65 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCC--AAAAGTGTCGAA-ACTTATATTAAATTA
* *
930230 TCGACA-TTTCAACATATCCCGTATTTTTTACCGGTTTTGTCATTTTTGAGA-CA
127 TCGACACTTTCAACATATCCGGTATTCTTTACCGGTTTTGTCA-TTTTGAGACCA
*
930283 TGTTTTGTCATATTTTTAC-ATGTCATATTGTTATGGATCGATATATTTTTTTTAAAGTATCGAC
1 -GTTTTGTCATATTTTTACTAT-T-ATATTGTTATGGATCGATACA-TTTTTTTAAAGTATCGAC
* *
930347 ATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATTA
62 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGAAACTTATATTAAATTA
* * * *
930412 TCGACACTTTCAATATATCCGGTA-TCGTTTTACCGATTTTGTCATTTCGAGACCG
127 TCGACACTTTCAACATATCCGGTATTC--TTTACCGGTTTTGTCATTTTGAGACCA
* * * *
930467 GTTTTATCATATATTTAC-ATGTAATATTGCTATGGAGCGATACATTTTT
1 GTTTTGTCATATTTTTACTAT-T-ATATTGTTATGGATCGATACATTTTT
930516 CATTTTGTAT
Statistics
Matches: 520, Mismatches: 60, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
180 2 0.00
181 24 0.05
182 336 0.65
183 137 0.26
184 20 0.04
185 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.44
Consensus pattern (180 bp):
GTTTTGTCATATTTTTACTATTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACTT
TATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGAAACTTATATTAAATTATCGA
CACTTTCAACATATCCGGTATTCTTTACCGGTTTTGTCATTTTGAGACCA
Found at i:930499 original size:365 final size:363
Alignment explanation
Indices: 929734--930515 Score: 1102
Period size: 365 Copynumber: 2.1 Consensus size: 363
929724 GTAGCGCTTT
* * *
929734 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATCGATCGATACATTTTTTTAAAGTATCGA
1 ACCGGTTTTGTCATATTTTTACATG-TATATTGCTATGGATCGATACATTTTTTTAAAGTATCGA
* * *
929799 CACTTTATATGTGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGT
65 CACTTTATATGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAATGTCAATACTTATATTAAAGT
*
929864 ATCGACACTCTCAACATATCCGATAGTTCTTTATCGGTTTTGACATTTTGAGACCAGTTTTGTCA
130 ATCGACACTCTCAACATATCCGATAGTTCTTTACCGGTTTTGACATTTTGAGACCAGTTTTGTCA
*
929929 TATTTTTAGCTATTATATTGTTATGGATCGATATATTTTCATAAAGTATCTACACTTTTTAGGCG
195 TATTTTTAGCTATTATATTGTTATGGATCGATATATTTTCATAAAGTATCGACACTTTTTAGGCG
* *
929994 CTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGAAACTTATTTTAAATTGTCGACACTTTCA
260 CTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGAAACTTATATTAAATTATCGACACTTTCA
* *
930059 ACATATCCGGTAGCGCTTTACCGGATTTGTCATTTTGGG
325 ACATATCCGGTAGCGCTTTACCGGATTTGTCATTTCGAG
*
930098 ACTGGTTTTGTCATATTTTTAGCTAT-TATATTGCTATGGATCGATACATTTTTTTAAAGTATCG
1 ACCGGTTTTGTCATATTTTTA-C-ATGTATATTGCTATGGATCGATACATTTTTTTAAAGTATCG
930162 ACACTTTATA-GACGCTATAACTTCTTCTCTTTTAAATTCCAAAAAAAT-TCAATACTTATATTA
64 ACACTTTATATG-CGCTATAACTTCTTCTCTTTTAAATTCC--AAAAATGTCAATACTTATATTA
* * * *
930225 AATTATCGACA-TTTCAACATATCCCG-TA-TTTTTTACCGGTTTTGTCATTTTTGAGA-CATGT
126 AAGTATCGACACTCTCAACATAT-CCGATAGTTCTTTACCGGTTTTGACA-TTTTGAGACCA-GT
**
930286 TTTGTCATATTTTTA-C-ATGTCATATTGTTATGGATCGATATATTTTTTTTAAAGTATCGACA-
188 TTTGTCATATTTTTAGCTAT-T-ATATTGTTATGGATCGATATA-TTTTCATAAAGTATCGACAC
*
930348 TTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATACTTATATTAAATTA
250 TTTT-TAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGAAACTTATATTAAATTA
* * *
930412 TCGACACTTTCAATATATCCGGTATCGTTTTACC-GATTTTGTCATTTCGAG
313 TCGACACTTTCAACATATCCGGTAGCGCTTTACCGGA-TTTGTCATTTCGAG
* * *
930463 ACCGGTTTTATCATATATTTACATGTAATATTGCTATGGAGCGATACATTTTT
1 ACCGGTTTTGTCATATTTTTACATGT-ATATTGCTATGGATCGATACATTTTT
930516 CATTTTGTAT
Statistics
Matches: 375, Mismatches: 27, Indels: 31
0.87 0.06 0.07
Matches are distributed among these distances:
362 2 0.01
363 23 0.06
364 159 0.42
365 183 0.49
366 8 0.02
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (363 bp):
ACCGGTTTTGTCATATTTTTACATGTATATTGCTATGGATCGATACATTTTTTTAAAGTATCGAC
ACTTTATATGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAATGTCAATACTTATATTAAAGTA
TCGACACTCTCAACATATCCGATAGTTCTTTACCGGTTTTGACATTTTGAGACCAGTTTTGTCAT
ATTTTTAGCTATTATATTGTTATGGATCGATATATTTTCATAAAGTATCGACACTTTTTAGGCGC
TATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGAAACTTATATTAAATTATCGACACTTTCAA
CATATCCGGTAGCGCTTTACCGGATTTGTCATTTCGAG
Found at i:931867 original size:15 final size:16
Alignment explanation
Indices: 931847--931880 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
931837 TGCCAAGTTT
*
931847 TTTGTTTC-TTTCTTA
1 TTTGTTTCGTTTCTCA
931862 TTTGTTTCGTTTCTCA
1 TTTGTTTCGTTTCTCA
931878 TTT
1 TTT
931881 TAAATGTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.06, C:0.15, G:0.09, T:0.71
Consensus pattern (16 bp):
TTTGTTTCGTTTCTCA
Found at i:934900 original size:2 final size:2
Alignment explanation
Indices: 934893--934953 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
934883 TAAGATAAAA
934893 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
934935 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
934954 CACTTCTTAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:943189 original size:22 final size:20
Alignment explanation
Indices: 943154--943193 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
943144 CAGTTAGCTC
943154 TAACAACCCTAACAACCAAG
1 TAACAACCCTAACAACCAAG
943174 TAACAACCTCCTAACAACCA
1 TAACAA-C-CCTAACAACCA
943194 GTCACACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.47, C:0.38, G:0.03, T:0.12
Consensus pattern (20 bp):
TAACAACCCTAACAACCAAG
Found at i:950290 original size:23 final size:23
Alignment explanation
Indices: 950218--950300 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 23
950208 ATAATTTGCA
950218 CCGAAGTG-CCACATA--TTTGTC
1 CCGAA-TGACCACATAGTTTTGTC
* * *
950239 TCGAATGACCACATAGTTTTATT
1 CCGAATGACCACATAGTTTTGTC
**
950262 TTGAATGACCACATAGTTTTGTC
1 CCGAATGACCACATAGTTTTGTC
*
950285 CCGAATGACCGCATAG
1 CCGAATGACCACATAG
950301 AACCCTCGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
20 2 0.04
21 11 0.22
23 37 0.74
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (23 bp):
CCGAATGACCACATAGTTTTGTC
Found at i:962132 original size:17 final size:16
Alignment explanation
Indices: 962110--962143 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
962100 TAAAAATAGT
962110 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
962127 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
962143 A
1 A
962144 TCCTCACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:964031 original size:43 final size:41
Alignment explanation
Indices: 963898--964080 Score: 154
Period size: 43 Copynumber: 4.3 Consensus size: 41
963888 CGATTGTTCA
*
963898 ACAAACGCCGCGAA-AGGTATTGATATTTAGCGGCGTTTAGCATT
1 ACAAACGCCGC-AATA-GTGTTGATATTTAGCGGCGTTT-GC-TT
* * * *
963942 A-AAACGCCGCAATAGGTGTTGATATTTAACGGCATTTGGTAG
1 ACAAACGCCGCAATA-GTGTTGATATTTAGCGGCGTTTGCT-T
* *
963984 ACAAACGCCGCAATAGTCGTTGATGTTTAGCGGCGTTTTCTT
1 ACAAACGCCGCAATAGT-GTTGATATTTAGCGGCGTTTGCTT
* * * * * *
964026 CACAAACGCCGCAGTAGATGTTTATTTTTACCGGCGTTTTCCT
1 -ACAAACGCCGCAATAG-TGTTGATATTTAGCGGCGTTTGCTT
964069 ACAAACGCCGCA
1 ACAAACGCCGCA
964081 GAATATGTCT
Statistics
Matches: 117, Mismatches: 16, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 18 0.15
43 96 0.82
44 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (41 bp):
ACAAACGCCGCAATAGTGTTGATATTTAGCGGCGTTTGCTT
Found at i:964490 original size:21 final size:21
Alignment explanation
Indices: 964466--964537 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 21
964456 ATATATTACT
964466 TCTCTCTGTTCTGCCGCTGCC
1 TCTCTCTGTTCTGCCGCTGCC
* *
964487 TCTCTCTGTGCTGCCACTGCTTC
1 TCTCTCTGTTCTGCCGCTGC--C
* *
964510 TCTCTCTGCTTCCGCTGCTG-C
1 TCTCTCTG-TTCTGCCGCTGCC
964531 TCTCTCT
1 TCTCTCT
964538 ATTTCCCTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
21 26 0.62
23 9 0.21
24 7 0.17
ACGTcount: A:0.01, C:0.42, G:0.17, T:0.40
Consensus pattern (21 bp):
TCTCTCTGTTCTGCCGCTGCC
Found at i:964543 original size:21 final size:21
Alignment explanation
Indices: 964503--964543 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
964493 TGTGCTGCCA
* *
964503 CTGCTTCTCTCTCTGCTTCCG
1 CTGCTGCTCTCTCTACTTCCG
*
964524 CTGCTGCTCTCTCTATTTCC
1 CTGCTGCTCTCTCTACTTCC
964544 CTTGCTTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.41, G:0.12, T:0.44
Consensus pattern (21 bp):
CTGCTGCTCTCTCTACTTCCG
Found at i:972436 original size:22 final size:21
Alignment explanation
Indices: 972411--972451 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
972401 TTTCCTTTGG
*
972411 TTTTATAAAAGTTTTTCTTTTC
1 TTTT-TAAAAGTTCTTCTTTTC
*
972433 TTTTTCAAAGTTCTTCTTT
1 TTTTTAAAAGTTCTTCTTT
972452 ATTTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTTTAAAAGTTCTTCTTTTC
Found at i:973640 original size:30 final size:30
Alignment explanation
Indices: 973604--973660 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
973594 TAATTTTTTA
*
973604 TTTTTA-GGTTTATTTATGTATTGTTAATTT
1 TTTTTAGGGTTGA-TTATGTATTGTTAATTT
973634 TTTTTAGGGTTGATTATGTATTGTTAA
1 TTTTTAGGGTTGATTATGTATTGTTAA
973661 ACTTCAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (30 bp):
TTTTTAGGGTTGATTATGTATTGTTAATTT
Found at i:975236 original size:2 final size:2
Alignment explanation
Indices: 975223--975253 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
975213 CTTAATCAAA
*
975223 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
975254 GAAATTTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:976149 original size:36 final size:36
Alignment explanation
Indices: 976099--976174 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
976089 GTTATAGCAA
*
976099 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
976135 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
976171 AAAA
1 AAAA
976175 TCCCAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:980661 original size:15 final size:15
Alignment explanation
Indices: 980643--980672 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
980633 CCACGGTGCT
980643 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
980658 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
980673 GATTGTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.47, G:0.27, T:0.13
Consensus pattern (15 bp):
CCCGGAATCCTGCGC
Found at i:981145 original size:36 final size:36
Alignment explanation
Indices: 981095--981170 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
981085 GTTATAGCAA
*
981095 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
981131 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
981167 AAAA
1 AAAA
981171 TCCCAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:983583 original size:106 final size:106
Alignment explanation
Indices: 983398--984383 Score: 1747
Period size: 106 Copynumber: 9.3 Consensus size: 106
983388 ATTGGGCACG
* * * *
983398 ATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
*
983463 TCCCTTCGTCGTGAAGTTGAGCTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
983504 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
983569 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
983610 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
*
983675 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGTAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
* * * * *
983716 ATATCCTTTGATGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGATAACCAGTGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
*
983781 TCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
983822 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
983887 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
983928 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
983993 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
* *
984034 ATATCCTTTGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
984099 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
984140 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTTTTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
*
984205 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
* * *
984246 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAGCGG
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
984311 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
66 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
* *
984352 ATATCCTTCGTTGTGAAGTTGAAATTGTCTCT
1 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCT
984384 CGAGCAAAAT
Statistics
Matches: 845, Mismatches: 35, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 845 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (106 bp):
ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGG
TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
Found at i:989292 original size:9 final size:10
Alignment explanation
Indices: 989278--989331 Score: 62
Period size: 9 Copynumber: 5.8 Consensus size: 10
989268 GGCCTGCAAA
989278 AATAA-AATT
1 AATAATAATT
989287 AATAA-AATT
1 AATAATAATT
989296 AATAATAA-T
1 AATAATAATT
*
989305 AATAATAATA
1 AATAATAATT
989315 AATAAT-ATT
1 AATAATAATT
*
989324 TATAATAA
1 AATAATAA
989332 CATGTATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
9 30 0.77
10 9 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AATAATAATT
Found at i:989328 original size:13 final size:13
Alignment explanation
Indices: 989277--989321 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
989267 GGGCCTGCAA
989277 AAATAA-AATTAAT
1 AAATAATAA-TAAT
*
989290 AAA-ATTAATAAT
1 AAATAATAATAAT
989302 -AATAATAATAAT
1 AAATAATAATAAT
989314 AAATAATA
1 AAATAATA
989322 TTTATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 2 0.07
12 13 0.48
13 12 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:991588 original size:15 final size:15
Alignment explanation
Indices: 991568--991597 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
991558 TTAAATTAAT
991568 TTATAAAATACTAAA
1 TTATAAAATACTAAA
*
991583 TTATAAAGTACTAAA
1 TTATAAAATACTAAA
991598 CATATAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TTATAAAATACTAAA
Found at i:995937 original size:60 final size:58
Alignment explanation
Indices: 995813--995988 Score: 158
Period size: 60 Copynumber: 2.9 Consensus size: 58
995803 TGTATTACCC
* * * * *
995813 TCATTTTAAATTGATCACTAGACTTTTAAATATTTTAATTTAATCCCTAAATTATGAATA
1 TCATTTTAAATTGTTC-CTAAACTTTTGAACATTTTAATTTAATCCC-AAACTATGAATA
* *
995873 TCATTTTAAATTAG-TCCTCAAACTTTTGAACATTTTAATTCAATCCTCAAACTATGACCT-
1 TCATTTTAAATT-GTTCCT-AAACTTTTGAACATTTTAATTTAATCC-CAAACTATGA-ATA
* * * *
995933 TCATTCTAAATTGGTTTCCAAAACTTTTTGAACATTTTGATTTTATCCCAAACTAT
1 TCATTTTAAATT-G-TTCCTAAAC-TTTTGAACATTTTAATTTAATCCCAAACTAT
995989 ACATATTGTC
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
59 2 0.02
60 57 0.59
61 15 0.15
62 23 0.24
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (58 bp):
TCATTTTAAATTGTTCCTAAACTTTTGAACATTTTAATTTAATCCCAAACTATGAATA
Found at i:996512 original size:9 final size:9
Alignment explanation
Indices: 996472--996542 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
996462 AACGAAAAGG
996472 AAAATAAAT
1 AAAATAAAT
996481 AAAA-AAAT
1 AAAATAAAT
* *
996489 AAAAGACAT
1 AAAATAAAT
996498 AATAAATAAAT
1 -A-AAATAAAT
* *
996509 TAAATATAT
1 AAAATAAAT
*
996518 AAAAGCAAAT
1 AAAA-TAAAT
996528 AAAATAAAT
1 AAAATAAAT
996537 AAAATA
1 AAAATA
996543 CTAGAAAATA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
8 8 0.16
9 27 0.55
10 8 0.16
11 6 0.12
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:996532 original size:28 final size:30
Alignment explanation
Indices: 996472--996542 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 30
996462 AACGAAAAGG
*
996472 AAAATAAA-TAAAAAAATAAAAGACATAAT
1 AAAATAAATTAAATAAATAAAAGACATAAT
*
996501 -AAATAAATTAAATATATAAAAG-CA-AAT
1 AAAATAAATTAAATAAATAAAAGACATAAT
*
996528 AAAATAAATAAAATA
1 AAAATAAATTAAATA
996543 CTAGAAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.08
28 22 0.59
29 12 0.32
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (30 bp):
AAAATAAATTAAATAAATAAAAGACATAAT
Found at i:996695 original size:18 final size:18
Alignment explanation
Indices: 996668--996716 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
996658 GTATATAAAT
996668 AAAATAAATAAAAATATAA
1 AAAAT-AATAAAAATATAA
* * *
996687 AAAATAATAAATATGTAT
1 AAAATAATAAAAATATAA
*
996705 AAATTAATAAAA
1 AAAATAATAAAA
996717 TAGATAATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAATAATAAAAATATAA
Found at i:996700 original size:43 final size:43
Alignment explanation
Indices: 996603--996747 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 43
996593 TGCAAGAGGG
* *
996603 AAAAAT-ATAAA-AT-TAAATAAATAAAATAAATATAAGATA-A
1 AAAAATAATAAATATGTATATAAATAAAATAAATA-AAAATATA
* *
996643 ACGAAATGAT-AATATGTATATAAATAAAATAAATAAAAATATA
1 A-AAAATAATAAATATGTATATAAATAAAATAAATAAAAATATA
* * * *
996686 AAAAATAATAAATATGTATA-AATTAATA-AAATAGATA-ATA
1 AAAAATAATAAATATGTATATAAATAAAATAAATAAAAATATA
* * *
996726 AAAATTAATATATATATATATA
1 AAAAATAATAAATATGTATATA
996748 TAATCTAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
40 21 0.24
41 14 0.16
42 21 0.24
43 30 0.35
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.30
Consensus pattern (43 bp):
AAAAATAATAAATATGTATATAAATAAAATAAATAAAAATATA
Found at i:996736 original size:36 final size:36
Alignment explanation
Indices: 996660--996750 Score: 85
Period size: 36 Copynumber: 2.5 Consensus size: 36
996650 GATAATATGT
* *
996660 ATATAAATAAAATAAATAAAAATATAAAAAATAATAA
1 ATATATAT-AAATAAATAAAAAGATAAAAAATAATAA
* * * *
996697 ATATGTATAAATTAATAAAATAGATAATAAA-AATTA
1 ATATATATAAATAAATAAAA-AGATAAAAAATAATAA
* *
996733 ATATATATATATATATAA
1 ATATATATAAATAAATAA
996751 TCTAAAAAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 29 0.67
37 14 0.33
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (36 bp):
ATATATATAAATAAATAAAAAGATAAAAAATAATAA
Found at i:996779 original size:22 final size:22
Alignment explanation
Indices: 996737--996782 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
996727 AAATTAATAT
* *
996737 ATATATATATATAATCTAAAAA
1 ATATATATATAAAATCAAAAAA
996759 ATATATATACTAAAAT-AAAAAA
1 ATATATATA-TAAAATCAAAAAA
996781 AT
1 AT
996783 GCATAAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (22 bp):
ATATATATATAAAATCAAAAAA
Found at i:1008664 original size:8 final size:8
Alignment explanation
Indices: 1008651--1008677 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1008641 TTAAATTAAA
1008651 TTAAAATG
1 TTAAAATG
1008659 TTAAAATG
1 TTAAAATG
1008667 TTAAAATG
1 TTAAAATG
1008675 TTA
1 TTA
1008678 CCGTATCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (8 bp):
TTAAAATG
Found at i:1008962 original size:9 final size:10
Alignment explanation
Indices: 1008937--1008976 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
1008927 ACCTTAAAAA
*
1008937 GAGAGTATTT
1 GAGAGAATTT
1008947 GAGAGAATTT
1 GAGAGAATTT
1008957 -AGAGAATTT
1 GAGAGAATTT
1008966 GAGAGAATTT
1 GAGAGAATTT
1008976 G
1 G
1008977 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.33
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:1008965 original size:19 final size:19
Alignment explanation
Indices: 1008938--1008975 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1008928 CCTTAAAAAG
*
1008938 AGAGTATTTGAGAGAATTT
1 AGAGAATTTGAGAGAATTT
1008957 AGAGAATTTGAGAGAATTT
1 AGAGAATTTGAGAGAATTT
1008976 GGTGTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.34
Consensus pattern (19 bp):
AGAGAATTTGAGAGAATTT
Found at i:1014792 original size:16 final size:16
Alignment explanation
Indices: 1014768--1014801 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1014758 TATCGCCGAC
*
1014768 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
1014784 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
1014800 CG
1 CG
1014802 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:1016528 original size:28 final size:28
Alignment explanation
Indices: 1016488--1016542 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
1016478 CTCTGCTTAC
* *
1016488 ATTATGATGTCGAGCTAATACTTGAAAT
1 ATTATGATGTCGAACCAATACTTGAAAT
*
1016516 ATTATGTTGTCGAACCAATACTTGAAA
1 ATTATGATGTCGAACCAATACTTGAAA
1016543 GCAACACAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (28 bp):
ATTATGATGTCGAACCAATACTTGAAAT
Found at i:1020110 original size:320 final size:314
Alignment explanation
Indices: 1019534--1020167 Score: 1196
Period size: 320 Copynumber: 2.0 Consensus size: 314
1019524 ATATTGTAAT
1019534 AATTCAAAGGAATCTTATAAACAATGGTACTTTATTGACTCATAAATCAACTTTCCTTGAGAATT
1 AATTCAAAGGAATCTTATAAACAATGGTACTTTATTGACTCATAAATCAACTTTCCTTGAGAATT
**
1019599 AAGTAAGAATCTTCATTTCTGCCTTTTGCTGCCTGAGTGATACTTTAAAAAGCTTAAGACAAGAT
66 AAGTAAGAATCTTCATTTCTGCCTTTTGCTGCCAAAGTGATACTTTAAAAAGCTTAAGACAAGAT
1019664 AATAATGTGAAAAGGATGGTATGAGAGAGACTGACACAATAACGAACAGGTTAAAAGGGGAAAAA
131 AATAATGTGAAAAGGATGGTATGAGAGAGACTGACACAATAACGAACAGGTTAAAAGGGGAAAAA
1019729 ACAGCAGCAACTTAAAGTAGTCCATATTCATGCATTTTTATCCAAAGCAATGAAAGCTTGTGCTT
196 ACAGCAGCAACTTAAAGTAGTCCATATTCATGCATTTTTATCCAAAGCAATGAAAGCTTGTGCTT
1019794 TCGAACACCATGACGAATCTGAGTTCACTAACTGTAGGATTTATATCTAATGCA
261 TCGAACACCATGACGAATCTGAGTTCACTAACTGTAGGATTTATATCTAATGCA
1019848 AATTCAAAGGAATCTTATAAACAATGGTACTTTATTGACTCATAAATCAACTTTCCTTGAGAATT
1 AATTCAAAGGAATCTTATAAACAATGGTACTTTATTGACTCATAAATCAACTTTCCTTGAGAATT
1019913 AAGTAAGAATCTTTCATTTTCTGCCTTTTGCTGCCAAAGTGATTACTTTAAAAAAGCTTAAGACA
66 AAGTAAGAATC-TTCA-TTTCTGCCTTTTGCTGCCAAAGTGA-TACTTT-AAAAAGCTTAAGACA
1019978 AGATATAATAATGTGAAAAGGATGGTATGAGAGAGACTGACACAATAACGAACAGGTTAAAAGGG
127 AG--ATAATAATGTGAAAAGGATGGTATGAGAGAGACTGACACAATAACGAACAGGTTAAAAGGG
1020043 GAAAAAACAGCAGCAACTTAAAGTAGTCCATATTCATGCATTTTTATCCAAAGCAATGAAAGCTT
190 GAAAAAACAGCAGCAACTTAAAGTAGTCCATATTCATGCATTTTTATCCAAAGCAATGAAAGCTT
1020108 GTGCTTTCGAACACCATGACGAATCTGAGTTCACTAACTGTAGGATTTATATCTAATGCA
255 GTGCTTTCGAACACCATGACGAATCTGAGTTCACTAACTGTAGGATTTATATCTAATGCA
1020168 CATGCAGTTT
Statistics
Matches: 312, Mismatches: 2, Indels: 6
0.98 0.01 0.02
Matches are distributed among these distances:
314 76 0.24
315 4 0.01
316 23 0.07
317 6 0.02
318 17 0.05
320 186 0.60
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (314 bp):
AATTCAAAGGAATCTTATAAACAATGGTACTTTATTGACTCATAAATCAACTTTCCTTGAGAATT
AAGTAAGAATCTTCATTTCTGCCTTTTGCTGCCAAAGTGATACTTTAAAAAGCTTAAGACAAGAT
AATAATGTGAAAAGGATGGTATGAGAGAGACTGACACAATAACGAACAGGTTAAAAGGGGAAAAA
ACAGCAGCAACTTAAAGTAGTCCATATTCATGCATTTTTATCCAAAGCAATGAAAGCTTGTGCTT
TCGAACACCATGACGAATCTGAGTTCACTAACTGTAGGATTTATATCTAATGCA
Done.