Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008195.1 Hibiscus syriacus cultivar Beakdansim tig00110814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1119982
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 6
Found at i:749752 original size:37 final size:36
Alignment explanation
Indices: 749709--749845 Score: 143
Period size: 37 Copynumber: 3.8 Consensus size: 36
749699 AAAACATTAA
749709 TATATAATATATAATTTTTAAAGTCATTTTGAAAACT
1 TATATAATATATAATTTTTAAA-TCATTTTGAAAACT
* *
749746 TATATAATATATAGTTTTTAAAACATTTATGAAAA-T
1 TATATAATATATAATTTTTAAATCATTT-TGAAAACT
* * * * ** *
749782 AAATATATTATATAGTTTTTAATTTTTTTTGAAAACA
1 -TATATAATATATAATTTTTAAATCATTTTGAAAACT
*
749819 TATATAATATAT-ATTTTTAAAACATTT
1 TATATAATATATAATTTTTAAATCATTT
749846 ATTCTTTTAT
Statistics
Matches: 81, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
35 10 0.12
36 22 0.27
37 49 0.60
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (36 bp):
TATATAATATATAATTTTTAAATCATTTTGAAAACT
Found at i:749860 original size:27 final size:27
Alignment explanation
Indices: 749830--749893 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
749820 ATATAATATA
749830 TATTTTTA-AAACATTTATTCTTTTATT
1 TATTTTTATAAACATTTATT-TTTTATT
* ***
749857 TATTATTATTTTCATTTATTTTTTATT
1 TATTTTTATAAACATTTATTTTTTATT
749884 TATTATTTAT
1 TATT-TTTAT
749894 TATTTGGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 18 0.60
28 12 0.40
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.69
Consensus pattern (27 bp):
TATTTTTATAAACATTTATTTTTTATT
Found at i:749862 original size:15 final size:16
Alignment explanation
Indices: 749844--749897 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
749834 TTTAAAACAT
*
749844 TTATTCTTTT-ATTTA
1 TTATTATTTTCATTTA
749859 TTATTATTTTCATTTA
1 TTATTATTTTCATTTA
* *
749875 TTTTTTATTTATTATTTA
1 -TTATTATTT-TCATTTA
749893 TTATT
1 TTATT
749898 TGGTGTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 9 0.28
16 5 0.16
17 12 0.38
18 6 0.19
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTATTTTCATTTA
Found at i:749897 original size:10 final size:11
Alignment explanation
Indices: 749842--749894 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
749832 TTTTTAAAAC
*
749842 ATTTATTCTTTT
1 ATTTATT-TATT
749854 ATTTA-TTATT
1 ATTTATTTATT
749864 ATTTTCATTTATT
1 A-TTT-ATTTATT
*
749877 TTTTATTTATT
1 ATTTATTTATT
749888 ATTTATT
1 ATTTATT
749895 ATTTGGTGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 4 0.11
11 17 0.49
12 9 0.26
13 5 0.14
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (11 bp):
ATTTATTTATT
Found at i:751159 original size:16 final size:17
Alignment explanation
Indices: 751121--751160 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
751111 TTTGATTTGA
* *
751121 TTTTAGTTTTAATTATT
1 TTTTATTTTTAATCATT
751138 TTTTATTTTTAA-CATT
1 TTTTATTTTTAATCATT
751154 TTTTATT
1 TTTTATT
751161 ATTATTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTTATTTTTAATCATT
Found at i:751215 original size:22 final size:21
Alignment explanation
Indices: 751190--751231 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
751180 TCCCTTAAAT
*
751190 TTATTTTGTTATTTATATTATA
1 TTATTTTATTATTTAT-TTATA
*
751212 TTATTTTATTTTTTATTTAT
1 TTATTTTATTATTTATTTAT
751232 TTAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTTATTATTTATTTATA
Found at i:751227 original size:26 final size:23
Alignment explanation
Indices: 751189--751251 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 23
751179 TTCCCTTAAA
751189 TTTATTTTGTTATTTATATTATATTAT
1 TTTATTTT-TTATTTAT-TTA-A-TAT
751216 TTTATTTTTTATTTATTTAATAT
1 TTTATTTTTTATTTATTTAATAT
751239 TTT-TTCTTTTATT
1 TTTATT-TTTTATT
751252 CTCATTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.06
23 13 0.37
24 1 0.03
25 3 0.09
26 8 0.23
27 8 0.23
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTATTTTTTATTTATTTAATAT
Found at i:755396 original size:31 final size:30
Alignment explanation
Indices: 755358--755417 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
755348 TTATATAAGC
755358 TATGTGATAAA-GTGATGGAACATGATATGTT
1 TATGTGATAAAGGT-ATGGAA-ATGATATGTT
*
755389 TATGTGATAAAGGTATGGAAATTATATGT
1 TATGTGATAAAGGTATGGAAATGATATGT
755418 CTATACAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 8 0.30
31 17 0.63
32 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (30 bp):
TATGTGATAAAGGTATGGAAATGATATGTT
Found at i:755710 original size:23 final size:23
Alignment explanation
Indices: 755642--755702 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
755632 CAATCTTATA
*
755642 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
755665 CGGCACTTCAGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
755688 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
755703 TTTATACGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:759754 original size:21 final size:21
Alignment explanation
Indices: 759730--759772 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
759720 AAATAATTTG
*
759730 GAGGTTATTTTTATATATTGT
1 GAGGTTATTATTATATATTGT
759751 GAGGTTATTATTATATATTGT
1 GAGGTTATTATTATATATTGT
759772 G
1 G
759773 TTCATATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (21 bp):
GAGGTTATTATTATATATTGT
Found at i:761001 original size:45 final size:45
Alignment explanation
Indices: 760942--761080 Score: 224
Period size: 45 Copynumber: 3.1 Consensus size: 45
760932 GAATAATTGC
* *
760942 AAGTGTATTGGTAAAATAAGCTTACGAGGTTATGGAACAAATGGT
1 AAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAACAAATGGT
**
760987 AAGTATATTGGTAAAATAAGCTTACGAGCTTATGGTATTAAATGGT
1 AAGTATATTGGTAAAATAAGCTTACGAGCTTATGG-AACAAATGGT
*
761033 AAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGACAAATGGT
1 AAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAACAAATGGT
761078 AAG
1 AAG
761081 AGATTTTATA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 43 0.50
46 43 0.50
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.30
Consensus pattern (45 bp):
AAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAACAAATGGT
Found at i:762067 original size:165 final size:164
Alignment explanation
Indices: 761795--763755 Score: 2128
Period size: 165 Copynumber: 11.8 Consensus size: 164
761785 ACTTAAGTCG
* * *
761795 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATT
1 AGAAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
*
761860 TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
*
761925 TCAAGGGCACATCATTTACAGTATAACTCAAGGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
761960 AGAAGGGTTATTTGTCACTTAAAGACCTTCGAGTTTGACTACGCTCAGCTTCAAGGCACATCATT
1 AGAAGGGTTATCTGTCAC-AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * *
762025 TGTAGCATAGCTTAAGTTGAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
* * * *
762090 TCAATGACACATCATTTTCAACATAACTCAAGGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
762125 AGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
762190 TACAGCATAGCTTAAGTCGAAAAGGGTTATCTGCCAAAGACCATCGAGTTTGATTACACTTAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
* * * *
762255 TCGAGGGTACATCATTTACAACATAACTCAATGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * *
762290 AGAAGGGTTATCTGTCACCAAAAGACCTTCGAATTCGATTACGCTCAGCTCCAAGGCACACCATT
1 AGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
762355 TGCAACATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTAGATTACACTTAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
* *
762420 TCGAGGGCACATCATTTACAACATAACTCAAGGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * * *
762455 AGAAAGGTTATCTGTCACCAAAAGACCTTCGAGTTCAACTACGTTCAGCTCCAAGGCATATTATT
1 AGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * * ** *
762520 TGCAGCATAACCTAAGTCGAGAAGGGTTATTTGCCAACCAAAGACCTTCAAGTTTGGCTACACTT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTC
*
762585 AGCTCCAA-GGCACATCATTTACAGCATAACTCAAGGCT
126 AGCTTCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* *
762623 ATAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTT
1 AGAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * *
762688 GCAGCATAGCTCAAGGCAAAAAGGGTTATCTGCCAACAAAAGACCTTCAAGTTCGATTACACTCA
66 GCAGCATAGCTTAAGTCGAGAAGGGTTATCTG-C--C-AAAGACCCTCGAGTTCGATTACACTCA
* *
762753 GC-TCAAAGGCACATCCAATTTACAGCATAACTCAAGGCG
127 GCTTCAAGGGCACAT-C-ATTTACAGCATAACTCAAGGCT
* * * * * *
762792 AGAAGGGTTATCTGTCA-ACGAAGACCTTCGAGTTTGATTGCACTCAGCTCGAAGGCA-AGTCAA
1 AGAAGGGTTATCTGTCACA-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA-TC--
* * * * * * * * *
762855 ATTTACAGCATAGCTCCAAG-CAAGAAGGGTTATTTGTCGACAAATACCTTCAAGTTCGACTACG
62 ATTTGCAGCATAGCT-TAAGTCGAGAAGGGTTATCTG-C--CAAAGACCCTCGAGTTCGATTACA
* * * * ** * *
762919 CTCAGCTCCAA-GACATATCATTTGCAGCATAACTTGAGTCA
123 CTCAGCTTCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
762960 AGAAGGGTTATCTGCCAACCAAAGTCCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAGATCATT
1 AGAAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* *
763025 TGCAGCATAGCTTAAGTCGAGAAGGGCTATCTTCCAAAGACCCTCGAGTTCGATTACACTCAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
* *
763090 TCGAGGGCACATCATTTACAGCATAACTCATGGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * *
763125 AGAAGGGTTATTTGTCACCAAAAGACTTTCGAGTTCGACTACGCTCAACTCCAAGGCATATCATT
1 AGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * * *
763190 TGCAACATAACTTAAGTCGAGAAGGGTTATCTGCCGACCAAAGACCTTCGAGTTTGACTACGCTA
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCT---G-CCAAAGACCCTCGAGTTCGATTACACTC
* * * *
763255 AGCTCCAA-GGCACATCATTTGCAGCATAACTTAA-GTT
126 AGCTTCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * * * * * *
763292 GACAAGGGTTATCTG-C-C-AAAGACCCTCGAGTTCAATTACACTCAGCTTCGAGGGCACATCAT
1 -AGAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
* * * * * * * * * * * *
763354 TTACAGCATAACTCAAGGCTAGAAGAGTTATTTGTCACCAAATACCATAGAGTTCGACTACGCTC
64 TTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTG---CCAAAGACCCTCGAGTTCGATTACACTC
* * * * * *
763419 AGCTCCAA-GGCATATCATTTGCAGCATAACTTAAGTCG
126 AGCTTCAAGGGCACATCATTTACAGCATAACTCAAGGCT
* * *
763457 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
1 AGAAGGGTTATCTGTC-ACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * ** * * *
763522 TACAGCATAGCTGAAGTCGATAAGGACTATCTTCCAAAGACCCTCAAGTTCAATTACACTCAGCT
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCT
* *
763587 TCAAGGGCACATCATTTATATCATAACTCAAGGCT
130 TCAAGGGCACATCATTTACAGCATAACTCAAGGCT
*
763622 AGAAGGGTTATCTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTCA-CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * *
763687 TGCAACATAGCTTAAGTCGAAAAGGGTTATCTGCCAACTGAAGAACTTCGAGTTCGATTACACTC
65 TGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCC-A---AAGACCCTCGAGTTCGATTACACTC
763752 AGCT
126 AGCT
763756 CAGTGGCAAG
Statistics
Matches: 1516, Mismatches: 237, Indels: 82
0.83 0.13 0.04
Matches are distributed among these distances:
162 1 0.00
164 154 0.10
165 788 0.52
166 10 0.01
167 166 0.11
168 139 0.09
169 188 0.12
170 32 0.02
171 34 0.02
172 4 0.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (164 bp):
AGAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
GCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTT
CAAGGGCACATCATTTACAGCATAACTCAAGGCT
Found at i:762188 original size:84 final size:83
Alignment explanation
Indices: 761795--763756 Score: 1757
Period size: 84 Copynumber: 23.6 Consensus size: 83
761785 ACTTAAGTCG
* *
761795 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
761860 TGCAGCATAGCTTAAGTCG
65 TACAGCATAACTCAAGGCT
* * * * *
761879 AGAAGGGCTATCTG---CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCAAGGGCACATCATT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATT
*
761941 TACAGTATAACTCAAGGCT
65 TACAGCATAACTCAAGGCT
* * * *
761960 AGAAGGGTTATTTGTCACTTAAAGACCTTCGAGTTTGACTACGCTCAGCTTCAAGGCACATCATT
1 AGAAGGGTTATCTGTCAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
** * * *
762025 TGTAGCATAGCTTAA-GTT
65 TACAGCATAACTCAAGGCT
* * * * *
762043 GAGAAGGGCTATCTG---CCAAAGACCCTT-GAGTTCGATTACACTCAGCTTCAATGACACATCA
1 -AGAAGGGTTATCTGTCACCAAAGA-CCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCA
* *
762104 TTTTCAACATAACTCAAGGCT
63 TTTACAGCATAACTCAAGGCT
762125 AGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * *
762190 TACAGCATAGCTTAAGTCG
65 TACAGCATAACTCAAGGCT
* * * * * * * * *
762209 AAAAGGGTTATCTG---CCAAAGACCATCGAGTTTGATTACACTTAGCTTCGAGGGTACATCATT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
* *
762271 TACAACATAACTCAATGCT
65 TACAGCATAACTCAAGGCT
* * *
762290 AGAAGGGTTATCTGTCACCAAAAGACCTTCGAATTCGATTACGCTCAGCTCCAAGGCACACCATT
1 AGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * *
762355 TGCAACATAGCTTAAGTCA
65 TACAGCATAACTCAAGGCT
* * * * * * * *
762374 AGAAGGGCTATCTG---CCAAAGACCCTCGAGTTAGATTACACTTAGCTTCGAGGGCACATCATT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
*
762436 TACAACATAACTCAAGGCT
65 TACAGCATAACTCAAGGCT
* * * * *
762455 AGAAAGGTTATCTGTCACCAAAAGACCTTCGAGTTCAACTACGTTCAGCTCCAAGGCATATTATT
1 AGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * *
762520 TGCAGCATAAC-CTAAGTCG
65 TACAGCATAACTC-AAGGCT
* * * * * * *
762539 AGAAGGGTTATTTGCCAACCAAAGACCTTCAAGTTTGGCTACACTTAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
762604 TACAGCATAACTCAAGGCT
65 TACAGCATAACTCAAGGCT
* * *
762623 ATAAGGGTTATCTGTCACAAAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * *
762688 GCAGCATAGCTCAAGGCA
66 ACAGCATAACTCAAGGCT
* * * * * * *
762706 AAAAGGGTTATCTGCCAACAAAAGACCTTCAAGTTCGATTACACTCAGCTCAAAGGCACATCCAA
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACAT-C-A
*
762771 TTTACAGCATAACTCAAGGCG
63 TTTACAGCATAACTCAAGGCT
* * * * * * *
762792 AGAAGGGTTATCTGTCAACGAAGACCTTCGAGTTTGATTGCACTCAGCTCGAAGGCA-AGTCAAA
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA-TC--A
* *
762856 TTTACAGCATAGCTCCAA-GCA
63 TTTACAGCATAACT-CAAGGCT
* * * * *
762877 AGAAGGGTTATTTGTCGA-CAAATACCTTCAAGTTCGACTACGCTCAGCTCCAAGACATATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* ** * *
762941 TGCAGCATAACTTGAGTCA
65 TACAGCATAACTCAAGGCT
* * *
762960 AGAAGGGTTATCTGCCAACCAAAGTCCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAGATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
763025 TGCAGCATAGCTTAAGTCG
65 TACAGCATAACTCAAGGCT
* * * * * *
763044 AGAAGGGCTATCT-T--CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
*
763106 TACAGCATAACTCATGGCT
65 TACAGCATAACTCAAGGCT
* * * *
763125 AGAAGGGTTATTTGTCACCAAAAGACTTTCGAGTTCGACTACGCTCAACTCCAAGGCATATCATT
1 AGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
763190 TGCAACATAACTTAAGTCG
65 TACAGCATAACTCAAGGCT
* * *
763209 AGAAGGGTTATCTGCCGACCAAAGACCTTCGAGTTTGACTACGCTAAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * *
763274 TGCAGCATAACTTAA-GTT
65 TACAGCATAACTCAAGGCT
* * * * * * *
763292 GACAAGGGTTATCTG---CCAAAGACCCTCGAGTTCAATTACACTCAGCTTCGAGGGCACATCAT
1 -AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCAT
763354 TTACAGCATAACTCAAGGCT
64 TTACAGCATAACTCAAGGCT
* * * * * *
763374 AGAAGAGTTATTTGTCACCAAATACCATAGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * *
763439 GCAGCATAACTTAAGTCG
66 ACAGCATAACTCAAGGCT
* *
763457 AGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * *
763522 TACAGCATAGCTGAAGTCG
65 TACAGCATAACTCAAGGCT
* ** * * * * * *
763541 ATAAGGACTATCT-T--CCAAAGACCCTCAAGTTCAATTACACTCAGCTTCAAGGGCACATCATT
1 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATT
* *
763603 TATATCATAACTCAAGGCT
65 TACAGCATAACTCAAGGCT
*
763622 AGAAGGGTTATCTGCCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * * *
763687 TGCAACATAGCTTAAGTCG
65 TACAGCATAACTCAAGGCT
* * ** * * *
763706 AAAAGGGTTATCTGCCAACTGAAGAACTTCGAGTTCGATTACACTCAGCTC
1 AGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
763757 AGTGGCAAGC
Statistics
Matches: 1517, Mismatches: 305, Indels: 112
0.78 0.16 0.06
Matches are distributed among these distances:
80 187 0.12
81 264 0.17
82 6 0.00
83 145 0.10
84 614 0.40
85 263 0.17
86 38 0.03
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (83 bp):
AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
ACAGCATAACTCAAGGCT
Found at i:762566 original size:249 final size:246
Alignment explanation
Indices: 761782--763756 Score: 1986
Period size: 249 Copynumber: 7.9 Consensus size: 246
761772 GGGTGTTACA
* * *
761782 ATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCT
1 ATAACTTAAGTCGAGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTCGATTACACTCAGCTCC
* * * * * * *
761847 AAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-CCAAAGACCCTCGAGTTC
64 AAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCCAAAGACCTTCGAGTTC
* * * * * * * * * *
761911 GATTACACTCAGCTTCAAGGGCACATCATTTACAGTATAACTCAAGGCTAGAAGGGTTATTTGTC
129 GACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC
* * * *
761976 ACTTAAAGACCTTCGAGTTTGACTACGCTCAGCTTCAAGGCACATCATTTGTAGC
193 AC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
* * * *
762031 ATAGCTTAAGTTGAGAAGGGCTATCTG--CCAAAGACCCTT-GAGTTCGATTACACTCAGCTTCA
1 ATAACTTAAGTCGAGAAGGGTTATCTGCACCAAAGA-CCTTCGAGTTCGATTACACTCAGCTCCA
* * *
762093 ATGACACATCATTTTCAACATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAG
65 A-GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT--CC-AAAGACCTTCGAG
* * *
762158 TTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCGAAAAGGGTTATCTG
126 TTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG
* * * * * * * * * *
762223 ---CCAAAGACCATCGAGTTTGATTACACTTAGCTTCGAGGGTACATCATTTACAAC
191 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGC
* * * *
762277 ATAACTCAA-TGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAATTCGATTACGCTCAGCTC
1 ATAACTTAAGT-CGAGAAGGGTTATCTG-CACC-AAAGACCTTCGAGTTCGATTACACTCAGCTC
* * * * * * * * *
762341 CAAGGCACACCATTTGCAACATAGCTTAAGTCAAGAAGGGCTATCTG-CCAAAGACCCTCGAGTT
63 CAAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCCAAAGACCTTCGAGTT
* * * * * * * * * * * * *
762405 AGATTACACTTAGCTTCGAGGGCACATCATTTACAACATAACTCAAGGCTAGAAAGGTTATCTGT
128 CGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGC
* * * *
762470 CACCAAAAGACCTTCGAGTTCAACTACGTTCAGCTCCAAGGCATATTATTTGCAGC
192 CACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
* * * * ** *
762526 ATAACCTAAGTCGAGAAGGGTTATTTGCCAACCAAAGACCTTCAAGTTTGGCTACACTTAGCTCC
1 ATAACTTAAGTCGAGAAGGGTTATCTG-C-ACCAAAGACCTTCGAGTTCGATTACACTCAGCTCC
*
762591 AAGGCACATCATTTACAGCATAACTCAAGGCTATAAGGGTTATCTGTCACAAAAGACCTTCGAGT
64 AAGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTC-C-AAAGACCTTCGAGT
* * * * * *
762656 TCGACTACGCTCAGCTACAAGGCACATCATTTGCAGCATAGCTCAAGGCAAAAAGGGTTATCTGC
127 TCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGC
* * * * * *
762721 CAACAAAAGACCTTCAAGTTCGATTACACTCAGCTCAAAGGCACATCCAATTTACAGC
192 C-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACAT-C-ATTTGCAGC
* * * * * * *
762779 ATAACTCAAGGCGAGAAGGGTTATCTGTCAACGAAGACCTTCGAGTTTGATTGCACTCAGCTCGA
1 ATAACTTAAGTCGAGAAGGGTTATCTG-CACCAAAGACCTTCGAGTTCGATTACACTCAGCTCCA
* * * * *
762844 AGGCA-AGTCAAATTTACAGCATAGCTCCAA-GCAAGAAGGGTTATTTGTCGACAAATACCTTCA
65 AGGCACA-TC--ATTTACAGCATAACT-CAAGGCTAGAAGGGTTATCTGTC--CAAAGACCTTCG
* * * *
762907 AGTTCGACTACGCTCAGCTCCAAGACATATCATTTGCAGCATAACTTGAGTCAAGAAGGGTTATC
124 AGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATC
* *
762972 TGCCAACCAAAGTCCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAGATCATTTGCAGC
189 TGCC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
* * * * *
763031 ATAGCTTAAGTCGAGAAGGGCTATCT--TCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGA
1 ATAACTTAAGTCGAGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGATTACACTCAGC-TCCA
* * * *
763094 GGGCACATCATTTACAGCATAACTCATGGCTAGAAGGGTTATTTGTCACCAAAAGACTTTCGAGT
65 AGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT--CC-AAAGACCTTCGAGT
* * *
763159 TCGACTACGCTCAACTCCAAGGCATATCATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTGC
127 TCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGC
* *
763224 CGACCAAAGACCTTCGAGTTTGACTACGCTAAGCTCCAAGGCACATCATTTGCAGC
192 C-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
* * * * *
763280 ATAACTTAAGTTGACAAGGGTTATCTG--CCAAAGACCCTCGAGTTCAATTACACTCAGCTTCGA
1 ATAACTTAAGTCGAGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGATTACACTCAGC-TCCA
* * * * * *
763343 GGGCACATCATTTACAGCATAACTCAAGGCTAGAAGAGTTATTTGTCACCAAATACCATAGAGTT
65 AGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT--CCAAAGACCTTCGAGTT
*
763408 CGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC
128 CGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCC
* *
763473 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTACAGC
193 -ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
* * * ** * * * * *
763528 ATAGCTGAAGTCGATAAGGACTATCT--TCCAAAGACCCTCAAGTTCAATTACACTCAGCTTCAA
1 ATAACTTAAGTCGAGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGATTACACTCAGCTCCAA
* * *
763591 GGGCACATCATTTATATCATAACTCAAGGCTAGAAGGGTTATCTGCCACCAAAAGACCTTCGAGT
66 -GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG--TCC-AAAGACCTTCGAGT
* * *
763656 TCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTTAAGTCGAAAAGGGTTATCTGC
127 TCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGC
** * * *
763721 CAACTGAAGAACTTCGAGTTCGATTACACTCAGCTC
192 C-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
763757 AGTGGCAAGC
Statistics
Matches: 1448, Mismatches: 235, Indels: 86
0.82 0.13 0.05
Matches are distributed among these distances:
245 77 0.05
246 118 0.08
247 4 0.00
248 248 0.17
249 562 0.39
250 94 0.06
251 78 0.05
252 91 0.06
253 33 0.02
254 138 0.10
255 5 0.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (246 bp):
ATAACTTAAGTCGAGAAGGGTTATCTGCACCAAAGACCTTCGAGTTCGATTACACTCAGCTCCAA
GGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCCAAAGACCTTCGAGTTCGA
CTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCACC
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
Found at i:764447 original size:37 final size:38
Alignment explanation
Indices: 764406--764513 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
764396 ATATATATGT
* * *
764406 ATATAATAATATAGTTTTTGAAAATG-TTTTTGACAA-A
1 ATATAAT-ATATAGTTTTTGAAAACGATTTTCGAAAATA
* *
764443 ATATAATGTATAATTTTTGAAAAACGATTTTCGAAAATA
1 ATATAATATATAGTTTTTG-AAAACGATTTTCGAAAATA
764482 AGTATATATTATATAGTTTTTGAAAAC-ATTTT
1 A-TATA-A-TATATAGTTTTTGAAAACGATTTT
764514 TAATATATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
36 10 0.17
37 12 0.21
38 8 0.14
39 2 0.03
40 9 0.16
41 6 0.10
42 11 0.19
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.44
Consensus pattern (38 bp):
ATATAATATATAGTTTTTGAAAACGATTTTCGAAAATA
Found at i:764523 original size:2 final size:2
Alignment explanation
Indices: 764516--764547 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
764506 AACATTTTTA
764516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
764548 GGTTTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:764553 original size:130 final size:127
Alignment explanation
Indices: 764395--764663 Score: 302
Period size: 130 Copynumber: 2.1 Consensus size: 127
764385 TTTATTTTAT
* **
764395 TATATATATGTATATAATAATATAGTTTTTG-AAAATGTTTTTGACAAA-A-TATA-ATGTATA-
1 TATATATATATATATAATAATATAG-TTTTGAAAAACATTTTTGA-AAACATTATATAT-TATAT
*
764455 A-TTTTTGAAAAACGATTTTCGAAAATAAGTATATATTATATAGTTTTTGAAAACATTTTTAATA
63 AGTTTTT--AAAAC-ATTTTCGAAAACAAGTATATATTATATAGTTTTT-AAAACATTTTTAA-A
764519 -TATA
123 GTATA
*
764523 TATATATATATATATATATATATATGGTTTTGAAAAACATTTTTGAAAACATTTATATATTATAT
1 TATATATATATATATA-ATA-ATATAGTTTTGAAAAACATTTTTGAAAACA-TTATATATTATAT
* ** *
764588 AGTTTTTAAAACATTTTTGAAAACATTTATATATTGTATAGTTTTTAAAACATTTTTAAAGTATA
63 AGTTTTTAAAACATTTTCGAAAACAAGTATATATTATATAGTTTTTAAAACATTTTTAAAGTATA
764653 TATA-ATATATA
1 TATATATATATA
764664 GTTTTCAAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
128 15 0.12
129 19 0.16
130 38 0.31
131 29 0.24
132 13 0.11
133 3 0.02
134 5 0.04
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (127 bp):
TATATATATATATATAATAATATAGTTTTGAAAAACATTTTTGAAAACATTATATATTATATAGT
TTTTAAAACATTTTCGAAAACAAGTATATATTATATAGTTTTTAAAACATTTTTAAAGTATA
Found at i:764654 original size:27 final size:28
Alignment explanation
Indices: 764601--764654 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
764591 TTTTAAAACA
* * *
764601 TTTTTGAAAACATTTATATATTGTATAG
1 TTTTTGAAAACATTTATAAAGTATATAG
*
764629 TTTTT-AAAACATTTTTAAAGTATATA
1 TTTTTGAAAACATTTATAAAGTATATA
764655 TAATATATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (28 bp):
TTTTTGAAAACATTTATAAAGTATATAG
Found at i:764674 original size:75 final size:72
Alignment explanation
Indices: 764535--764887 Score: 305
Period size: 77 Copynumber: 4.6 Consensus size: 72
764525 TATATATATA
* * * *
764535 TATATATATATATGGTTTTGAAAAACATTTTTGAAAACATTTATATATTATATAGTTTTTAAAAC
1 TATATAT-TATATAGTTTT-TAAAACATTTTT--AAA-ATATATATAATATATAG-TTTTAAAAC
764600 ATTTTTGAAAACATT
60 A-TTTTGAAAAC-TT
* *
764615 TATATATTGTATAGTTTTTAAAACATTTTTAAAGTATATATAATATATAGTTTTCAAAACATTTT
1 TATATATTATATAGTTTTTAAAACATTTTTAAAATATATATAATATATAGTTTT-AAAACATTTT
*
764680 GAAAACGTA
65 GAAAAC-TT
*
764689 TATATATTATATAGTTTTTAAAAACATTTTTGAAAACATTTATATATAATATATAAAATTTTAAA
1 TATATATTATATAGTTTTT-AAAACATTTTT--AAA-A--TATATATAATATAT--AGTTTTAAA
764754 ATCATTTTGAAAAC-T
58 A-CATTTTGAAAACTT
* * *
764769 TATATATTATATAGTTTTTAAAACAATTTTGAAAATAAATATATAATATAGTTTATTTTTAAAAA
1 TATATATTATATAGTTTTTAAAAC-ATTTTTAAAAT--ATATATAATATA---TAGTTTTAAAAC
** *
764834 AAATTGAAAAC-A
60 ATTTTGAAAACTT
* * * *
764846 TATATAATATATAATTTTTAAAACATTTTTGAAATTTATATA
1 TATATATTATATAGTTTTTAAAACATTTTTAAAATATATATA
764888 TTTTATGTTT
Statistics
Matches: 234, Mismatches: 23, Indels: 38
0.79 0.08 0.13
Matches are distributed among these distances:
74 39 0.17
75 32 0.14
76 12 0.05
77 47 0.20
78 23 0.10
79 14 0.06
80 46 0.20
81 4 0.02
82 17 0.07
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (72 bp):
TATATATTATATAGTTTTTAAAACATTTTTAAAATATATATAATATATAGTTTTAAAACATTTTG
AAAACTT
Found at i:764700 original size:38 final size:37
Alignment explanation
Indices: 764533--764910 Score: 320
Period size: 36 Copynumber: 9.8 Consensus size: 37
764523 TATATATATA
* *
764533 TATATATATATATATGGTTTTGAAAAACATTTTTGAAAAC
1 TATATATAT-TATATAGTTTT-TAAAACA-TTTTGAAAAC
*
764573 ATTTATATATTATATAGTTTTTAAAACATTTTTGAAAAC
1 -TATATATATTATATAGTTTTTAAAACA-TTTTGAAAAC
* * * *
764612 ATTTATATATTGTATAGTTTTTAAAACATTTT-TAAAG
1 -TATATATATTATATAGTTTTTAAAACATTTTGAAAAC
* *
764649 TATATATAATATATAGTTTTCAAAACATTTTGAAAAC
1 TATATATATTATATAGTTTTTAAAACATTTTGAAAAC
764686 GTATATATATTATATAGTTTTTAAAAACATTTTTGAAAAC
1 -TATATATATTATATAGTTTTT-AAAACA-TTTTGAAAAC
* **
764726 ATTTATATATAATATATAAAATTTTAAAATCATTTTGAAAAC
1 ---TATATATATTATAT-AGTTTTTAAAA-CATTTTGAAAAC
764768 T-TATATATTATATAGTTTTTAAAACAATTTTGAAAA-
1 TATATATATTATATAGTTTTTAAAAC-ATTTTGAAAAC
* * * **
764804 TAAATATATAATATAGTTTATTTTTAAAAAAAATTGAAAAC
1 TATATATATTATATAG----TTTTTAAAACATTTTGAAAAC
* *
764845 -ATATATAATATATAATTTTTAAAACATTTTTG-AAA-
1 TATATATATTATATAGTTTTTAAAACA-TTTTGAAAAC
* * *
764880 TTTATATATTTTAT-GTTTTTGAAAATATTTT
1 TATATATATTATATAGTTTTT-AAAACATTTT
764911 TTTATTTATT
Statistics
Matches: 281, Mismatches: 38, Indels: 42
0.78 0.11 0.12
Matches are distributed among these distances:
35 9 0.03
36 57 0.20
37 40 0.14
38 34 0.12
39 51 0.18
40 39 0.14
41 17 0.06
42 27 0.10
43 7 0.02
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (37 bp):
TATATATATTATATAGTTTTTAAAACATTTTGAAAAC
Found at i:764873 original size:195 final size:201
Alignment explanation
Indices: 764443--764911 Score: 516
Period size: 195 Copynumber: 2.3 Consensus size: 201
764433 TTTTGACAAA
*
764443 ATATAATGTATAATTTTTGAAAAACGATTTTCGAAAATAAGTATATATTATATAGTTTTTGAAAA
1 ATATAATATATAATTTTT--AAAAC-ATTTT-GAAAAT-A-TATATATTATATAGTTTTTGAAAA
* *
764508 CATTTTTAATATATATATATATATATATATATATATATATGGTTTTGAAAAACATTTTTGAAAAC
60 CATTTTTAATATACATATATATATATATATATATATATA-GATTTTGAAAAACATTTTTGAAAAC
* * * *
764573 ATTTATATATTATATAGTTTTTAAAACATTTTTGAAAACATTTATATATTGTATAGTTTTTAAAA
124 A-TTATATATTATATAGTTTTTAAAACAATTTTGAAAAAATATATATATAGTATAGTTTTTAAAA
* ** * **
764638 CATTTTTAAAGTAT
188 AAAATTGAAAACAT
* * *
764652 ATATAATATATAGTTTTCAAAACATTTTGAAAACGTATATATATTATATAGTTTTTAAAAACATT
1 ATATAATATATAATTTTTAAAACATTTTGAAAA--TATATATATTATATAGTTTTTGAAAACATT
*
764717 TTTGAA-A-ACAT-T-TATATATA-ATATATA-A-A-ATTTT-AAAATCA-TTTTGAAAAC-TTA
64 TTT-AATATACATATATATATATATATATATATATAGATTTTGAAAAACATTTTTGAAAACATTA
*
764771 TATATTATATAGTTTTTAAAACAATTTTGAAAATAAATATATAATATAGTTTA-TTTTTAAAAAA
128 TATATTATATAGTTTTTAAAACAATTTTG-AAA-AAATATAT-ATATAGTATAGTTTTTAAAAAA
764835 AATTGAAAACAT
190 AATTGAAAACAT
* * *
764847 ATATAATATATAATTTTTAAAACATTTTTG-AAATTTATATATTTTAT-GTTTTTGAAAATATTT
1 ATATAATATATAATTTTTAAAACA-TTTTGAAAATATATATATTATATAGTTTTTGAAAACATTT
764910 TT
65 TT
764912 TTATTTATTA
Statistics
Matches: 229, Mismatches: 24, Indels: 31
0.81 0.08 0.11
Matches are distributed among these distances:
192 16 0.07
193 43 0.19
194 3 0.01
195 58 0.25
196 19 0.08
197 4 0.02
199 1 0.00
200 1 0.00
201 7 0.03
202 8 0.03
203 1 0.00
204 3 0.01
205 36 0.16
206 8 0.03
207 6 0.03
209 15 0.07
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (201 bp):
ATATAATATATAATTTTTAAAACATTTTGAAAATATATATATTATATAGTTTTTGAAAACATTTT
TAATATACATATATATATATATATATATATATAGATTTTGAAAAACATTTTTGAAAACATTATAT
ATTATATAGTTTTTAAAACAATTTTGAAAAAATATATATATAGTATAGTTTTTAAAAAAAATTGA
AAACAT
Found at i:764938 original size:6 final size:6
Alignment explanation
Indices: 764929--764984 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
764919 TTATTATCCA
* *
764929 TTTATT TTTA-- TCTATT TTTATT TATTATT ATTATT ATTTATT TCTTATT
1 TTTATT TTTATT TTTATT TTTATT T-TTATT TTTATT -TTTATT T-TTATT
764978 TTTATT T
1 TTTATT T
764985 GGTGTTTGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 3 0.07
6 22 0.54
7 16 0.39
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:764951 original size:20 final size:20
Alignment explanation
Indices: 764916--764983 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
764906 ATTTTTTTAT
** *
764916 TTATTATTATCCATTTATTT
1 TTATTATTATTTATTTATTA
764936 TTATCTATT-TTTATTTATTA
1 TTAT-TATTATTTATTTATTA
*
764956 TTATTATTATTTATTTCTTA
1 TTATTATTATTTATTTATTA
*
764976 TTTTTATT
1 TTATTATT
764984 TGGTGTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 4 0.10
20 33 0.80
21 4 0.10
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTATTATTTATTTATTA
Found at i:764952 original size:34 final size:33
Alignment explanation
Indices: 764909--764984 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 33
764899 TGAAAATATT
764909 TTTTTATTTATTATTATCCATTTATTT-TTATC-TA
1 TTTTTATTTATTATTAT-CA-TTATTTATT-TCTTA
*
764943 TTTTTATTTATTATTATTATTATTTATTTCTTA
1 TTTTTATTTATTATTATCATTATTTATTTCTTA
764976 TTTTTATTT
1 TTTTTATTT
764985 GGTGTTTGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
32 8 0.21
33 14 0.36
34 17 0.44
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.72
Consensus pattern (33 bp):
TTTTTATTTATTATTATCATTATTTATTTCTTA
Found at i:766260 original size:16 final size:17
Alignment explanation
Indices: 766222--766261 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
766212 TTTGATTTTA
* *
766222 TTTTAGTTTTAATTATT
1 TTTTATTTTTAATCATT
766239 TTTTATTTTTAA-CATT
1 TTTTATTTTTAATCATT
766255 TTTTATT
1 TTTTATT
766262 ATTTCTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTTATTTTTAATCATT
Found at i:766319 original size:17 final size:17
Alignment explanation
Indices: 766287--766375 Score: 69
Period size: 18 Copynumber: 5.1 Consensus size: 17
766277 TTCCCTTAAA
*
766287 TTTATTTTGTTATTTTAT
1 TTTATTTTATT-TTTTAT
766305 TTTATTTTATTTTTTA-
1 TTTATTTTATTTTTTAT
*
766321 TTTATTTAATATTTTTTCT
1 TTTATTT--TATTTTTTAT
*
766340 TTTA-TTCATTTTTT-T
1 TTTATTTTATTTTTTAT
766355 CTTT-TTTCTCATTTTTTAT
1 -TTTATTT-T-ATTTTTTAT
766374 TT
1 TT
766376 CTTTTCCTCC
Statistics
Matches: 59, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
15 1 0.02
16 19 0.32
17 5 0.08
18 29 0.49
19 5 0.08
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.78
Consensus pattern (17 bp):
TTTATTTTATTTTTTAT
Found at i:766333 original size:23 final size:21
Alignment explanation
Indices: 766287--766351 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 21
766277 TTCCCTTAAA
766287 TTTATTTTGTTATTTTATTTTAT
1 TTTATTTT-TTA-TTTATTTTAT
766310 TTTATTTTTTATTTATTTAATAT
1 TTTATTTTTTATTTATTT--TAT
*
766333 TTT-TTCTTTTATTCATTTT
1 TTTATT-TTTTATTTATTTT
766352 TTTCTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
21 8 0.21
22 5 0.13
23 25 0.66
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTATTTTTTATTTATTTTAT
Found at i:766353 original size:18 final size:18
Alignment explanation
Indices: 766332--766371 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
766322 TTATTTAATA
766332 TTTTTTCTTTTAT-TCAT
1 TTTTTTCTTTTATCTCAT
*
766349 TTTTTTCTTTTTTCTCAT
1 TTTTTTCTTTTATCTCAT
766367 TTTTT
1 TTTTT
766372 ATTTCTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTTCTTTTATCTCAT
Found at i:766522 original size:13 final size:13
Alignment explanation
Indices: 766504--766534 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
766494 CGAATCAAAC
766504 ATTTTAAATTTTA
1 ATTTTAAATTTTA
*
766517 ATTTTAATTTTTA
1 ATTTTAAATTTTA
766530 ATTTT
1 ATTTT
766535 CGCAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTAAATTTTA
Found at i:768477 original size:60 final size:60
Alignment explanation
Indices: 768369--768502 Score: 141
Period size: 60 Copynumber: 2.2 Consensus size: 60
768359 CTCATGTGAC
* * ** *
768369 CATTTTATAACTTTTAATAGTCGATGGACTCAATAAAGCAACTCCCTATAGGTGA-GGGAT
1 CATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACTCCCTATA-GTGAGGGGAT
* *
768429 CATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGTAGTA-T-CCTATAGTTAGGGGAT
1 CATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCA--ACTCCCTATAGTGAGGGGAT
768489 CATTTGTGT-ACTTT
1 CATTT-TGTAACTTT
768503 GCTCTCACTC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 3 0.05
60 55 0.87
61 4 0.06
62 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (60 bp):
CATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACTCCCTATAGTGAGGGGAT
Found at i:772101 original size:55 final size:55
Alignment explanation
Indices: 772001--772594 Score: 880
Period size: 55 Copynumber: 10.8 Consensus size: 55
771991 TGGTTTTATC
* * * **
772001 CCCTATTGCTTCAGGGAGTA--AAACTCGAA-AATCTTCGTCAATCGTGTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
* ** * * * * *
772053 CCCCATTT-TTCCAGAGAGTACAAGACTCAAACGAT-TCTCGATAATCGTGTCTGTT
1 CCCTATTTCTT-CAGAGAGTATGAGACTCGAACAATCT-TCAACAATCGTGTCTGCT
* *
772108 CCCTATTT-TTCAGAGAGTATGAGACTCGAACAATTCTT-AATAATCGTGCCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAA-TCTTCAACAATCGTGTCTGCT
* * *
772162 CCCTATTTTTTTCAGAGAGAATGAGACTTGAACAATCTTCAACGAA-CGTGTCTGCT
1 CCCTA-TTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAAC-AATCGTGTCTGCT
*
772218 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTCTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
772273 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
*
772328 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAACGTGTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
772383 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
* *
772438 CCCTATGTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACAAACGTGTCTGCT
1 CCCTAT-TTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
772494 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
772549 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATC
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATC
772595 ATTGGGAAAC
Statistics
Matches: 497, Mismatches: 32, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.00
52 14 0.03
54 47 0.09
55 339 0.68
56 93 0.19
57 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (55 bp):
CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCT
Found at i:772522 original size:276 final size:275
Alignment explanation
Indices: 772001--772594 Score: 921
Period size: 276 Copynumber: 2.2 Consensus size: 275
771991 TGGTTTTATC
* * * **
772001 CCCTATTGCTTCAGGGAGTA--AAACTCGAA-AATCTTCGTCAATCGTGTCTGCTCCCCATTTTT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCCATTTTT
* * * * *
772063 CCAGAGAGTACAAGACTCAAACGATTCTCGATAATCGTGTCTGTTCCCTATTTTTCAGAGAGTAT
66 CCAGAGAGTACAAGACTCAAACAATTCTCAACAAACGTGTCTGCTCCCTATTTTTCAGAGAGTAT
* * * *
772128 GAGACTCGAACAATTCTTAATAATCGTGCCTGCTCCCTATTTTTTTCAGAGAGAATGAGACTTGA
131 GAGACTCGAACAATTCTTAACAATCGTGCCTGCTCCCTATGTTCTTCAGAGAGAATGAGACTCGA
*
772193 ACAATCTTCAACGAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCA
196 ACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCA
772258 ACAATCGTCTCTGCT
261 ACAATCGTCTCTGCT
*
772273 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCT
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCCATTT-T
** *
772338 T-CAGAGAGTATGAGACTCGAACAA-TCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAG
65 TCCAGAGAGTACAAGACTCAAACAATTC-TCAACAAACGTGTCTGCTCCCTATTT-TTCAGAGAG
*
772401 TATGAGACTCGAACAA-TCTTCAACAATCGTGTCTGCTCCCTATGTTCTTCAGAGAGAATGAGAC
128 TATGAGACTCGAACAATTCTT-AACAATCGTGCCTGCTCCCTATGTTCTTCAGAGAGAATGAGAC
772465 TCGAACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATC
192 TCGAACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATC
*
772530 TTCAACAATCGTGTCTGCT
257 TTCAACAATCGTCTCTGCT
772549 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATC
1 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATC
772595 ATTGGGAAAC
Statistics
Matches: 294, Mismatches: 21, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
272 18 0.06
274 10 0.03
275 73 0.25
276 193 0.66
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (275 bp):
CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCCATTTTT
CCAGAGAGTACAAGACTCAAACAATTCTCAACAAACGTGTCTGCTCCCTATTTTTCAGAGAGTAT
GAGACTCGAACAATTCTTAACAATCGTGCCTGCTCCCTATGTTCTTCAGAGAGAATGAGACTCGA
ACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCA
ACAATCGTCTCTGCT
Found at i:773626 original size:7 final size:8
Alignment explanation
Indices: 773617--773644 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
773607 TTTTCATTCA
773617 TTTTTTAT
1 TTTTTTAT
773625 TTTTTTAT
1 TTTTTTAT
773633 TTTTTTAT
1 TTTTTTAT
773641 TTTT
1 TTTT
773645 CCATTTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:773650 original size:16 final size:16
Alignment explanation
Indices: 773617--773653 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
773607 TTTTCATTCA
**
773617 TTTTTTATTTTTTTAT
1 TTTTTTATTTTTCCAT
773633 TTTTTTATTTTTCCAT
1 TTTTTTATTTTTCCAT
773649 TTTTT
1 TTTTT
773654 CACTCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTATTTTTCCAT
Found at i:783651 original size:16 final size:16
Alignment explanation
Indices: 783630--783667 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
783620 AACCTTATTC
783630 ACATGATATCTACCCA
1 ACATGATATCTACCCA
783646 ACATGATATCTACCCA
1 ACATGATATCTACCCA
783662 ATCATG
1 A-CATG
783668 CTTTAGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (16 bp):
ACATGATATCTACCCA
Found at i:788038 original size:16 final size:16
Alignment explanation
Indices: 788017--788057 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
788007 GTAAAAATCG
788017 AGTAACGAGCTTAACA
1 AGTAACGAGCTTAACA
*
788033 AGTAACGAACTTAACA
1 AGTAACGAGCTTAACA
*
788049 AGCAACGAG
1 AGTAACGAG
788058 TCGAGTTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.15
Consensus pattern (16 bp):
AGTAACGAGCTTAACA
Found at i:797848 original size:13 final size:13
Alignment explanation
Indices: 797830--797872 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
797820 AGAGTTATAG
797830 AAAAAAAAAGAAT
1 AAAAAAAAAGAAT
*
797843 AAAAAATGAA-AAT
1 AAAAAA-AAAGAAT
*
797856 GAAAAAAAAGAAT
1 AAAAAAAAAGAAT
797869 AAAA
1 AAAA
797873 GCAAAACACC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 20 0.83
14 2 0.08
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.09
Consensus pattern (13 bp):
AAAAAAAAAGAAT
Found at i:809911 original size:29 final size:30
Alignment explanation
Indices: 809828--809922 Score: 129
Period size: 30 Copynumber: 3.2 Consensus size: 30
809818 AAAATCGGAA
* * *
809828 GAACCGACTGAAAACCGGGAAAATCGGGGT
1 GAACCGGCTGAAAACCGGCAAAACCGGGGT
809858 GAACCGGCTGAAAACCGGCAAAACCGGGGT
1 GAACCGGCTGAAAACCGGCAAAACCGGGGT
* **
809888 GAACCGGCTG-AAACCGACAAAACCGGTTT
1 GAACCGGCTGAAAACCGGCAAAACCGGGGT
809917 GAACCG
1 GAACCG
809923 CCGGTTCACT
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 22 0.37
30 37 0.63
ACGTcount: A:0.35, C:0.25, G:0.31, T:0.09
Consensus pattern (30 bp):
GAACCGGCTGAAAACCGGCAAAACCGGGGT
Found at i:810718 original size:8 final size:8
Alignment explanation
Indices: 810705--810729 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
810695 TGAACCCGGT
810705 TGAACCAG
1 TGAACCAG
810713 TGAACCAG
1 TGAACCAG
810721 TGAACCAG
1 TGAACCAG
810729 T
1 T
810730 ACCTTCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (8 bp):
TGAACCAG
Found at i:811083 original size:21 final size:20
Alignment explanation
Indices: 811059--811106 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
811049 CTAAAAAATA
*
811059 ATTAAATTTATTAATTTATT
1 ATTAAATTTAATAATTTATT
811079 GATTATAA-TTAATAATTTATT
1 -ATTA-AATTTAATAATTTATT
811100 -TTAAATT
1 ATTAAATT
811107 ACAAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 2 0.08
19 4 0.17
21 16 0.67
22 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTAAATTTAATAATTTATT
Found at i:811422 original size:16 final size:16
Alignment explanation
Indices: 811403--811434 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
811393 TCAATTACAA
811403 GTCAGATTCATAACAG
1 GTCAGATTCATAACAG
*
811419 GTCAGGTTCATAACAG
1 GTCAGATTCATAACAG
811435 ATCGAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (16 bp):
GTCAGATTCATAACAG
Found at i:815893 original size:42 final size:41
Alignment explanation
Indices: 815827--815964 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 41
815817 TCGATTTAAC
* * *
815827 TAGAACGGGAGGAAGCACCGCACTTTCGATTCTCGTCTAAAG
1 TAGAACGGAAGGAAGCATCACACTTTCGATT-TCGTCTAAAG
*
815869 TAGAAAGGAAGGAAGCATCACACTTTCGA--T--TC--AAG
1 TAGAACGGAAGGAAGCATCACACTTTCGATTTCGTCTAAAG
* * * *
815904 TAGAATGAAAGGAGGCATAACACTTTCGATTTTCGTCTAAAG
1 TAGAACGGAAGGAAGCATCACACTTTCGA-TTTCGTCTAAAG
*
815946 TAGAACGGAAGGAAACATC
1 TAGAACGGAAGGAAGCATC
815965 GTATTTTCGA
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
35 28 0.37
37 2 0.03
38 1 0.01
39 1 0.01
40 2 0.03
42 42 0.55
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (41 bp):
TAGAACGGAAGGAAGCATCACACTTTCGATTTCGTCTAAAG
Found at i:815906 original size:35 final size:35
Alignment explanation
Indices: 815866--815934 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
815856 TTCTCGTCTA
* *
815866 AAGTAGAAAGGAAGGAAGCATCACACTTTCGATTC
1 AAGTAGAAAGAAAGGAAGCATAACACTTTCGATTC
* *
815901 AAGTAGAATGAAAGGAGGCATAACACTTTCGATT
1 AAGTAGAAAGAAAGGAAGCATAACACTTTCGATT
815935 TTCGTCTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (35 bp):
AAGTAGAAAGAAAGGAAGCATAACACTTTCGATTC
Found at i:815928 original size:77 final size:77
Alignment explanation
Indices: 815847--816013 Score: 253
Period size: 77 Copynumber: 2.2 Consensus size: 77
815837 GGAAGCACCG
* *
815847 CACTTTCGATTCTCGTCTAAAGTAGAAAGGAAGGAAGCATCACACTTTCGATTCAAGTAGAATGA
1 CACTTTCGATTCTCGTCTAAAGTAGAAAGGAAGGAAACATCACACTTTCGATTCAAGTAGAACGA
*
815912 AAGGAGGCATAA
66 AAAGAGGCATAA
* * ** *
815924 CACTTTCGATTTTCGTCTAAAGTAGAACGGAAGGAAACATCGTATTTTCGATTCAAGTAGAACGA
1 CACTTTCGATTCTCGTCTAAAGTAGAAAGGAAGGAAACATCACACTTTCGATTCAAGTAGAACGA
*
815989 AAAGAGGCATAT
66 AAAGAGGCATAA
816001 CACTTTCGATTCT
1 CACTTTCGATTCT
816014 AGATGACATA
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (77 bp):
CACTTTCGATTCTCGTCTAAAGTAGAAAGGAAGGAAACATCACACTTTCGATTCAAGTAGAACGA
AAAGAGGCATAA
Found at i:831645 original size:14 final size:14
Alignment explanation
Indices: 831626--831669 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
831616 GTATTATTTG
*
831626 TAATATAATAATAT
1 TAATATAATAATAA
831640 TAATATAATAATAA
1 TAATATAATAATAA
*
831654 T-ATATAATAAAAA
1 TAATATAATAATAA
831667 TAA
1 TAA
831670 GAGACAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAATATAATAATAA
Found at i:831908 original size:36 final size:37
Alignment explanation
Indices: 831832--832581 Score: 806
Period size: 36 Copynumber: 20.4 Consensus size: 37
831822 TGATCTGTTC
** * *
831832 TTGCTTCACTACTCTT-TTTGTGAAGGCTATGATGGCT
1 TTGCTTCACTACTCTTCCGT-TGAAGGCTAAGATGACT
*
831869 TTGCTTCACTACTCTTCCGTTG-AGGCTAAGATGAAT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
*
831905 TTGCTTCACTACTCTTCCG-TGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* *
831941 TTGATTCACTACTCTTCCG-TGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* * *
831977 TTGCTTCACTACTCTTCC-ATGGAGGCTAAGATGGCT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* * *
832013 TTGCTTCACTACTCTTTCG-TGGAGGCTAAGATGGCT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* * *
832049 TTGCTCCACTACTCTTTCG-TGAAGGATAAGATGGA-T
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGAT-GACT
* * * *
832085 TTGCTTCACTACTCTTTCG-TGAATGATAAAATGGA-T
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGAT-GACT
* * *
832121 TTGTTTCACTACTCTTTCG-TGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
832157 TTGCTTCACTACTCTTCCG-TGAAGGCTAAGATGACTTT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGAC--T
* * *
832195 TTTCTTCACTACTCTTCC-ATGAAGGCTAAGATGGCT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
*
832231 TTGCTTCACTACTCTTCCG-TGGAGGCTAAGATGACTTTGCGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCT-A-A-GA---T--GACT
* *
832275 TTGCTTCAATACTCTTTCG-TGAAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
*
832311 TTTCTTCACTACTCTTCCG-TGAAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* *
832347 TTGCTTCACTAGTCTTCCG-TGAAGGCTAAGATGGATT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGAT-GACT
* * * *
832384 TTGCTTCACTACTCTTCAG-TGGAGGCTAAAATGGCT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* * *
832420 TTACTTCACTACTCTTCC-ATGGAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* *
832456 TTGCTTCACCACTCTTCCG-TGAAGGCTAAGATGAAT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
832492 TTGCTTCACTACTCTTCCG-TGAAGGCTAAGATGACT
1 TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
* *
832528 TTGCTTCACTACTCCTCCG-TGAAGGCTTAAGATGGATT
1 TTGCTTCACTACTCTTCCGTTGAAGGC-TAAGAT-GACT
832566 TTGCTTCACTACTCTT
1 TTGCTTCACTACTCTT
832582 TCGTGGAGGT
Statistics
Matches: 632, Mismatches: 58, Indels: 45
0.86 0.08 0.06
Matches are distributed among these distances:
35 4 0.01
36 483 0.76
37 57 0.09
38 54 0.09
39 2 0.00
41 2 0.00
42 2 0.00
43 1 0.00
44 27 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (37 bp):
TTGCTTCACTACTCTTCCGTTGAAGGCTAAGATGACT
Found at i:831950 original size:72 final size:72
Alignment explanation
Indices: 831832--832586 Score: 911
Period size: 72 Copynumber: 10.3 Consensus size: 72
831822 TGATCTGTTC
** * *
831832 TTGCTTCACTACTCTTTTTGTGAAGGCTATGATGGCTTTGCTTCACTACTCTTCCGTTG-AGGCT
1 TTGCTTCACTACTC-TTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCG-TGAAGGCT
831896 AAGATGAAT
64 AAGATGAAT
* * *
831905 TTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACTTTGATTCACTACTCTTCCGTGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
*
831970 GATGACT
66 GATGAAT
* * * * *
831977 TTGCTTCACTACTCTTCCATGGAGGCTAAGATGGCTTTGCTTCACTACTCTTTCGTGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
**
832042 GATGGCT
66 GATGAAT
* * * * * *
832049 TTGCTCCACTACTCTTTCGTGAAGGATAAGATGGA-TTTGCTTCACTACTCTTTCGTGAATGATA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGAT-GACTTTGCTTCACTACTCTTCCGTGAAGGCTA
* *
832113 AAATGGAT
65 AGATGAAT
* * *
832121 TTGTTTCACTACTCTTTCGTGGAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
*
832186 GATGACTTT
66 GATGA--AT
* * * *
832195 TTTCTTCACTACTCTTCCATGAAGGCTAAGATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
832260 GATGACTTTGCGACT
66 GATGA-------A-T
* * *
832275 TTGCTTCAATACTCTTTCGTGAAGGCTAAGATGACTTTTCTTCACTACTCTTCCGTGAAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
*
832340 GATGACT
66 GATGAAT
* * * *
832347 TTGCTTCACTAGTCTTCCGTGAAGGCTAAGATGGATTTTGCTTCACTACTCTTCAGTGGAGGCTA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGAT-GACTTTGCTTCACTACTCTTCCGTGAAGGCTA
* **
832412 AAATGGCT
65 AGATGAAT
* * * *
832420 TTACTTCACTACTCTTCCATGGAGGCTAAGATGACTTTGCTTCACCACTCTTCCGTGAAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
832485 GATGAAT
66 GATGAAT
*
832492 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCCTCCGTGAAGGCTTA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGC-TA
*
832557 AGATGGATT
65 AGAT-GAAT
*
832566 TTGCTTCACTACTCTTTCGTG
1 TTGCTTCACTACTCTTCCGTG
832587 GAGGTTAAAT
Statistics
Matches: 591, Mismatches: 77, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
71 4 0.01
72 352 0.60
73 83 0.14
74 87 0.15
79 1 0.00
80 64 0.11
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (72 bp):
TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
GATGAAT
Found at i:832044 original size:108 final size:108
Alignment explanation
Indices: 831832--832590 Score: 955
Period size: 108 Copynumber: 6.9 Consensus size: 108
831822 TGATCTGTTC
** * *
831832 TTGCTTCACTACTCTTTTTGTGAAGGCTATGATGGCTTTGCTTCACTACTCTTCCGTTG-AGGCT
1 TTGCTTCACTACTC-TTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCG-TGAAGGCT
**
831896 AAGATGAATTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
64 AAGATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * * *
831941 TTGATTCACTACTCTTCCGTGGAGGCTAAGATGACTTTGCTTCACTACTCTTCCATGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
* *
832006 GATGGCTTTGCTTCACTACTCTTTCGTGGAGGCTAAGATGGCT
66 GATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* * * * * *
832049 TTGCTCCACTACTCTTTCGTGAAGGATAAGATGGA-TTTGCTTCACTACTCTTTCGTGAATGATA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGAT-GACTTTGCTTCACTACTCTTCCGTGAAGGCTA
* * * *
832113 AAATGGATTTGTTTCACTACTCTTTCGTGGAGGCTAAGATGACT
65 AGATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
* *
832157 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTTTTCTTCACTACTCTTCCATGAAGGCT
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGAC--TTTGCTTCACTACTCTTCCGTGAAGGCT
832222 AAGATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACTTTGCGACT
64 AAGATGGCTTTGCTTCACTACTCTTCCGTGGAGGCT-A-A-GA---T--GACT
* * *
832275 TTGCTTCAATACTCTTTCGTGAAGGCTAAGATGACTTTTCTTCACTACTCTTCCGTGAAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
* * * *
832340 GATGACTTTGCTTCACTAGTCTTCCGTGAAGGCTAAGATGGATT
66 GATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGAT-GACT
* * * * * * *
832384 TTGCTTCACTACTCTTCAGTGGAGGCTAAAATGGCTTTACTTCACTACTCTTCCATGGAGGCTAA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
* * * *
832449 GATGACTTTGCTTCACCACTCTTCCGTGAAGGCTAAGATGAAT
66 GATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
*
832492 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCCTCCGTGAAGGCTTA
1 TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGC-TA
* *
832557 AGATGGATTTTGCTTCACTACTCTTTCGTGGAGG
65 AGATGG-CTTTGCTTCACTACTCTTCCGTGGAGG
832591 TTAAATCTGA
Statistics
Matches: 565, Mismatches: 70, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
107 4 0.01
108 258 0.46
109 118 0.21
110 79 0.14
111 1 0.00
112 1 0.00
113 4 0.01
114 1 0.00
115 1 0.00
116 61 0.11
118 37 0.07
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (108 bp):
TTGCTTCACTACTCTTCCGTGAAGGCTAAGATGACTTTGCTTCACTACTCTTCCGTGAAGGCTAA
GATGGCTTTGCTTCACTACTCTTCCGTGGAGGCTAAGATGACT
Found at i:832830 original size:62 final size:63
Alignment explanation
Indices: 832733--833014 Score: 193
Period size: 62 Copynumber: 4.6 Consensus size: 63
832723 ATTAAAATGA
* * * * * *
832733 TTGACTTCTCTTTACGAGAAAATCAAGAATTGACTCCT-CTGGGGAA-TCAAAAATAATATATG
1 TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACTCCTACT-AGGAAGTCAAAAATAATAAAGG
* * *
832795 TTGACTTCTCTTCACGAGGAAGTCAAAAATTGACT-CTACTAGGAAGTTAGAAATAATAAAGG
1 TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACTCCTACTAGGAAGTCAAAAATAATAAAGG
* * * * * * * ** *
832857 TTGACTTATCTTCACGAGAAAGTCAAAGATTGACT-CGATTGGGGAGTCGATGATAACAAA-G
1 TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACTCCTACTAGGAAGTCAAAAATAATAAAGG
* * * ** * * ** *
832918 TTGACTTTTCTTCATGAGCAAGTCAAGGATTGGCTCCT-CTA-GAGAGTTAGGGAATAACAAA-G
1 TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACTCCTACTAGGA-AGTCA-AAAATAATAAAGG
* **
832980 TTGACTTCTCTTCACGAGGAAGTCAAGGATTGACT
1 TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACT
833015 ATGAGGGGAA
Statistics
Matches: 175, Mismatches: 40, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
60 1 0.01
61 41 0.23
62 133 0.76
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (63 bp):
TTGACTTCTCTTCACGAGAAAGTCAAAAATTGACTCCTACTAGGAAGTCAAAAATAATAAAGG
Found at i:832941 original size:61 final size:62
Alignment explanation
Indices: 832794--833014 Score: 198
Period size: 62 Copynumber: 3.6 Consensus size: 62
832784 AATAATATAT
* * * * *
832794 GTTGACTTCTCTTCACGAGGAAGTCAAAAATTGACTCTACTAGGAAGTTAGAAATAATAAAG
1 GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACTCGACTAGGAAGTTAGAAATAACAAAG
* * * * *
832856 GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACTCGATTGGGGAG-TCGATGATAACAAA-
1 GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACTCGACTAGGAAGTTAGA-AATAACAAAG
* * * * * ** *
832917 GTTGACTTTTCTTCATGAGCAAGTCAAGGATTGGCTCCTCTA-GAGAGTTAGGGAATAACAAA-
1 GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACTCGACTAGGA-AGTTA-GAAATAACAAAG
* * *
832979 GTTGACTTCTCTTCACGAGGAAGTCAAGGATTGACT
1 GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACT
833015 ATGAGGGGAA
Statistics
Matches: 128, Mismatches: 27, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
60 1 0.01
61 38 0.30
62 88 0.69
63 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (62 bp):
GTTGACTTATCTTCACGAGAAAGTCAAAGATTGACTCGACTAGGAAGTTAGAAATAACAAAG
Found at i:834726 original size:64 final size:65
Alignment explanation
Indices: 834623--834779 Score: 203
Period size: 64 Copynumber: 2.4 Consensus size: 65
834613 TTCAGTGTGA
* * * *
834623 ATCGATGCACAAGAAGTGCATCGATGCA-CCCATTAAAAATGGAAACATCGAATGTAATTAGTGC
1 ATCGATGCATAAGGAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGC
* * * *
834687 ATCGATGCATAAGGAGTGCATCGATGCACCCCCTT-AAAATGAAAACATCGAAGGTGATTGGTGT
1 ATCGATGCATAAGGAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGC
*
834751 ATCGATGCAT-GGGTAGTGCATCGATGCAC
1 ATCGATGCATAAGG-AGTGCATCGATGCAC
834780 ATGTTAAAGA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
63 2 0.02
64 75 0.91
65 5 0.06
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (65 bp):
ATCGATGCATAAGGAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGTAATTAGTGC
Found at i:835675 original size:31 final size:31
Alignment explanation
Indices: 835622--835726 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
835612 GTTCTACGGA
*
835622 ACATATGGACAGAATTACCTATGTCTTTCGAG
1 ACATATGGACAGTA-TACCTATGTCTTTCGAG
***
835654 ACATATGGACAGTATACCTATGTTCTAAGGA-
1 ACATATGGACAGTATACCTATG-TCTTTCGAG
* * *
835685 ACATATGGACAGTTTACCTAGGT-TCTTCGGG
1 ACATATGGACAGTATACCTATGTCT-TTCGAG
*
835716 ACCTATGGACA
1 ACATATGGACA
835727 ATTGTCATGG
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
29 1 0.02
30 2 0.03
31 38 0.64
32 18 0.31
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (31 bp):
ACATATGGACAGTATACCTATGTCTTTCGAG
Found at i:836423 original size:61 final size:61
Alignment explanation
Indices: 836348--836469 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
836338 TATGTTATAG
*
836348 AAATTTTAAATTACTTACGATTTTATACAAGTAAATGTTTTGAAAAGTCAATGTGACACCT
1 AAATTTTAAATTACTCACGATTTTATACAAGTAAATGTTTTGAAAAGTCAATGTGACACCT
836409 AAATTTTAAATTACTCACGATTTTATACAAGTAAATGTTTTGAAAAGTCAATGTGACACCT
1 AAATTTTAAATTACTCACGATTTTATACAAGTAAATGTTTTGAAAAGTCAATGTGACACCT
836470 TGGACTCAGA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (61 bp):
AAATTTTAAATTACTCACGATTTTATACAAGTAAATGTTTTGAAAAGTCAATGTGACACCT
Found at i:839279 original size:24 final size:20
Alignment explanation
Indices: 839252--839309 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
839242 GTATGGGTAG
839252 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
* *
839276 TGCATAGATGGACTGTAGAA
1 TGCATCGATGCACTGTAGAA
839296 TGCATCGATGCACT
1 TGCATCGATGCACT
839310 TTAAGGGGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 16 0.53
22 1 0.03
23 2 0.07
24 11 0.37
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:840137 original size:32 final size:31
Alignment explanation
Indices: 840096--840202 Score: 94
Period size: 31 Copynumber: 3.4 Consensus size: 31
840086 AGTCGAGGGT
*
840096 TTACCTATGTTCTACGGAATATATGGATAGAA
1 TTACCTATGTTCTACGGAACATATGGATAG-A
* * *
840128 TTACCTATG-TCTTTC-AAGACATATGGACAG-
1 TTACCTATGTTC-TACGGA-ACATATGGATAGA
* *
840158 TATACCTATGTTCTAAGGAACATATGGATAGT
1 T-TACCTATGTTCTACGGAACATATGGATAGA
*
840190 TTACCTAGGTTCT
1 TTACCTATGTTCT
840203 TCGAGACCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
30 1 0.02
31 34 0.57
32 25 0.42
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (31 bp):
TTACCTATGTTCTACGGAACATATGGATAGA
Found at i:840167 original size:31 final size:30
Alignment explanation
Indices: 840129--840220 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 30
840119 TGGATAGAAT
840129 TACCTATGTCTTTCAAGACATATGGACAGTA
1 TACCTATGT-TTTCAAGACATATGGACAGTA
* * *
840160 TACCTATGTTCT-AAGGAACATATGGATAGTT
1 TACCTATGTTTTCAA-G-ACATATGGACAGTA
* * *
840191 TACCTAGGTTCTTCGAGACCTATGGACAGT
1 TACCTATGTT-TTCAAGACATATGGACAGT
840221 TTTCGAGGTT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
29 2 0.04
30 3 0.06
31 41 0.84
32 2 0.04
33 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (30 bp):
TACCTATGTTTTCAAGACATATGGACAGTA
Found at i:840170 original size:63 final size:62
Alignment explanation
Indices: 840097--840220 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 62
840087 GTCGAGGGTT
* * *
840097 TACCTATGTTCTACGGAATATATGGATAGAATTACCTATG-TCTTTCAAGACATATGGACAGTA
1 TACCTATGTTCTAAGGAACATATGGATAG-ATTACCTAGGTTC-TTCAAGACATATGGACAGTA
* * *
840160 TACCTATGTTCTAAGGAACATATGGATAGTTTACCTAGGTTCTTCGAGACCTATGGACAGT
1 TACCTATGTTCTAAGGAACATATGGATAGATTACCTAGGTTCTTCAAGACATATGGACAGT
840221 TTTCGAGGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
62 25 0.46
63 29 0.54
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (62 bp):
TACCTATGTTCTAAGGAACATATGGATAGATTACCTAGGTTCTTCAAGACATATGGACAGTA
Found at i:840222 original size:31 final size:31
Alignment explanation
Indices: 840144--840222 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
840134 ATGTCTTTCA
* *
840144 AGACATATGGACAGTATACCTATGTTCTAAG
1 AGACATATGGACAGTTTACCTAGGTTCTAAG
* **
840175 -GAACATATGGATAGTTTACCTAGGTTCTTCG
1 AG-ACATATGGACAGTTTACCTAGGTTCTAAG
*
840206 AGACCTATGGACAGTTT
1 AGACATATGGACAGTTT
840223 TCGAGGTTCT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (31 bp):
AGACATATGGACAGTTTACCTAGGTTCTAAG
Found at i:841298 original size:40 final size:42
Alignment explanation
Indices: 841251--841348 Score: 139
Period size: 40 Copynumber: 2.4 Consensus size: 42
841241 TTCTGACTGA
*
841251 TTGGAATGGGCATTCAAAATGCCCCACAT-T-CTATTTC-TGG
1 TTGGAATGGGCCTTCAAAATGCCCCA-ATATGCTATTTCTTGG
*
841291 TTGGAATGGGCCTTCAAAATGCCCCAATATGTTATTTCTTGG
1 TTGGAATGGGCCTTCAAAATGCCCCAATATGCTATTTCTTGG
*
841333 TTGAAATGGGCCTTCA
1 TTGGAATGGGCCTTCA
841349 TAGTGTCCCA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.04
40 26 0.50
41 6 0.12
42 18 0.35
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TTGGAATGGGCCTTCAAAATGCCCCAATATGCTATTTCTTGG
Found at i:844880 original size:22 final size:22
Alignment explanation
Indices: 844855--844908 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
844845 GTTCATTTTA
* *
844855 GTGAGTCACCGGATTTACGATG
1 GTGACTCACCGGATCTACGATG
*
844877 GTGACTCAACGGATCTACGATG
1 GTGACTCACCGGATCTACGATG
844899 GTGACTCACC
1 GTGACTCACC
844909 ATAGGGAGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (22 bp):
GTGACTCACCGGATCTACGATG
Found at i:845259 original size:14 final size:14
Alignment explanation
Indices: 845240--845282 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
845230 GTATTATTTG
*
845240 TAATATAATAATAT
1 TAATATAATAATAA
845254 TAATATAATAATAA
1 TAATATAATAATAA
*
845268 T-ATATAATAAAAA
1 TAATATAATAATAA
845281 TA
1 TA
845283 CGGGACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TAATATAATAATAA
Found at i:846856 original size:16 final size:16
Alignment explanation
Indices: 846835--846873 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
846825 TTCCGGGTAT
* *
846835 CCGGTTGCCCGAGTAC
1 CCGGTTACCCGAATAC
846851 CCGGTTACCCGAATAC
1 CCGGTTACCCGAATAC
846867 CCGGTTA
1 CCGGTTA
846874 ATTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.36, G:0.26, T:0.21
Consensus pattern (16 bp):
CCGGTTACCCGAATAC
Found at i:847136 original size:32 final size:32
Alignment explanation
Indices: 847071--847136 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
847061 CGGATATCGG
* *
847071 GTACCCAATTACCGGGTACCCGCAAAATTCGA
1 GTACCCAATTACCGGATACCCGCAAAATCCGA
* * *
847103 GTACCCGATTACCGGATACCCGTAACATCCGA
1 GTACCCAATTACCGGATACCCGCAAAATCCGA
847135 GT
1 GT
847137 CGAGACACAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.20
Consensus pattern (32 bp):
GTACCCAATTACCGGATACCCGCAAAATCCGA
Found at i:847211 original size:16 final size:16
Alignment explanation
Indices: 847162--847213 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
847152 GAAATCGTCA
*
847162 ATCCGAAAATTCCGGAT
1 ATCC-AAAAATCCGGAT
* *
847179 ACCCAAAAAT-CAGAT
1 ATCCAAAAATCCGGAT
847194 ATCCAAAAATCCGGAT
1 ATCCAAAAATCCGGAT
847210 ATCC
1 ATCC
847214 GGATTTGCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 13 0.45
16 13 0.45
17 3 0.10
ACGTcount: A:0.42, C:0.27, G:0.12, T:0.19
Consensus pattern (16 bp):
ATCCAAAAATCCGGAT
Found at i:848774 original size:179 final size:184
Alignment explanation
Indices: 848474--848839 Score: 697
Period size: 179 Copynumber: 2.0 Consensus size: 184
848464 CATTTCCCAT
848474 ATTTTAGTTTTTTTACTATAACATAATTTGATTTATATTTAATTTTAAGTATTATATTAATAAAA
1 ATTTTAGTTTTTTTACTATAACATAATTTGATTTATATTTAATTTTAAGTATTATATTAATAAAA
848539 ATTTCACATGTCATATTTTTAATGGTTCATACTTTTTAAAACGAAGAAAGAGATGATC-TATT-A
66 ATTTCACATGTCATATTTTTAATGGTTCATACTTTTTAAAACGAAGAAAGAGATGATCTTATTAA
848602 A-AT-ATATTAAACATTTTA-TTTTATATAATATTAAAACTTAAATAAAGTAAC
131 ATATAATATTAAACATTTTATTTTTATATAATATTAAAACTTAAATAAAGTAAC
848653 ATTTTAGTTTTTTTACTATAACATAATTTGATTTATATTTAATTTTAAGTATTATATTAATAAAA
1 ATTTTAGTTTTTTTACTATAACATAATTTGATTTATATTTAATTTTAAGTATTATATTAATAAAA
848718 ATTTCACATGTCATATTTTTAATGGTTCATACTTTTTAAAACGAAGAAAGAGATGATCTTATTAA
66 ATTTCACATGTCATATTTTTAATGGTTCATACTTTTTAAAACGAAGAAAGAGATGATCTTATTAA
848783 ATATAATATTAAACATTTTATTTTTATATAATATTAAAACTTAAATAAAGTAAC
131 ATATAATATTAAACATTTTATTTTTATATAATATTAAAACTTAAATAAAGTAAC
848837 ATT
1 ATT
848840 ATCAATCATA
Statistics
Matches: 182, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
179 123 0.68
180 4 0.02
181 2 0.01
182 2 0.01
183 15 0.08
184 36 0.20
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (184 bp):
ATTTTAGTTTTTTTACTATAACATAATTTGATTTATATTTAATTTTAAGTATTATATTAATAAAA
ATTTCACATGTCATATTTTTAATGGTTCATACTTTTTAAAACGAAGAAAGAGATGATCTTATTAA
ATATAATATTAAACATTTTATTTTTATATAATATTAAAACTTAAATAAAGTAAC
Found at i:849207 original size:26 final size:27
Alignment explanation
Indices: 849178--849228 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
849168 ATTTTCATCA
*
849178 TATTTTTTATTAA-TAATATTATTAAT
1 TATTTTTAATTAATTAATATTATTAAT
*
849204 TATTTTTAATTAATTATTATTATTA
1 TATTTTTAATTAATTAATATTATTA
849229 CATGTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (27 bp):
TATTTTTAATTAATTAATATTATTAAT
Found at i:855779 original size:18 final size:18
Alignment explanation
Indices: 855751--855801 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
855741 CATAGTGCTA
855751 AAATG-GTATCGGTACTG
1 AAATGAGTATCGGTACTG
855768 AAATGAGTATCGGTACTG
1 AAATGAGTATCGGTACTG
855786 AAATGAGTATCGGTAC
1 AAATGAGTATCGGTAC
855802 CAAAGAAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (18 bp):
AAATGAGTATCGGTACTG
Found at i:856302 original size:15 final size:14
Alignment explanation
Indices: 856282--856340 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
856272 TTTGATAATG
856282 CTATGTGACAATGTT
1 CTATGTGA-AATGTT
856297 CTATGTGAAATG-T
1 CTATGTGAAATGTT
* *
856310 -TATGTGATTATGTG
1 CTATGTGA-AATGTT
*
856324 CTAAGTGAATATGTT
1 CTATGTGAA-ATGTT
856339 CT
1 CT
856341 GTGGAATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
12 7 0.20
13 4 0.11
14 4 0.11
15 20 0.57
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (14 bp):
CTATGTGAAATGTT
Found at i:856316 original size:27 final size:27
Alignment explanation
Indices: 856278--856343 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
856268 AATATTTGAT
* * *
856278 AATGCTATGTGACAATGTTCTATGTGA
1 AATGTTATGTGACAATGTGCTAAGTGA
**
856305 AATGTTATGTGATTATGTGCTAAGTGA
1 AATGTTATGTGACAATGTGCTAAGTGA
*
856332 ATATGTTCTGTG
1 A-ATGTTATGTG
856344 GAATATAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 23 0.72
28 9 0.28
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (27 bp):
AATGTTATGTGACAATGTGCTAAGTGA
Found at i:856584 original size:23 final size:23
Alignment explanation
Indices: 856553--856650 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 23
856543 GTCGAGGGTT
856553 CTATGTGGTCATTCAGGACAAAC
1 CTATGTGGTCATTCAGGACAAAC
* * *
856576 CTATATGGTCTTTCAGGACAAAT
1 CTATGTGGTCATTCAGGACAAAC
* *
856599 TTATGTGGTCATTCGGGACAAAC
1 CTATGTGGTCATTCAGGACAAAC
* *
856622 CTATGTTGTCATTC-GGAACAAAA
1 CTATGTGGTCATTCAGG-ACAAAC
856645 CTATGT
1 CTATGT
856651 TCTCGTTCGG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 2 0.03
23 61 0.97
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (23 bp):
CTATGTGGTCATTCAGGACAAAC
Found at i:856643 original size:46 final size:45
Alignment explanation
Indices: 856554--856695 Score: 142
Period size: 46 Copynumber: 3.1 Consensus size: 45
856544 TCGAGGGTTC
* * * * *
856554 TATGTGGTCATTCAGGACAAACCTATATGGTCTTTCAGGACAAATT
1 TATGTGGTCATTCGGGACAAACCTATGTTGTCATTC-GGACAAATA
856600 TATGTGGTCATTCGGGACAAACCTATGTTGTCATTCGGAACAAA-A
1 TATGTGGTCATTCGGGACAAACCTATGTTGTCATTCGG-ACAAATA
** * * * *
856645 CTATGTTCTCGTTCGGAACAAAACTATGTTGTCATTTGGGACAAATA
1 -TATGTGGTCATTCGGGACAAACCTATGTTGTCA-TTCGGACAAATA
856692 TATG
1 TATG
856696 GCACTTCGGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
45 2 0.02
46 74 0.91
47 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (45 bp):
TATGTGGTCATTCGGGACAAACCTATGTTGTCATTCGGACAAATA
Found at i:856651 original size:23 final size:23
Alignment explanation
Indices: 856600--856689 Score: 117
Period size: 23 Copynumber: 3.9 Consensus size: 23
856590 AGGACAAATT
* * *
856600 TATGTGGTCATTCGGGACAAACC
1 TATGTTGTCATTCGGAACAAAAC
856623 TATGTTGTCATTCGGAACAAAAC
1 TATGTTGTCATTCGGAACAAAAC
* *
856646 TATGTTCTCGTTCGGAACAAAAC
1 TATGTTGTCATTCGGAACAAAAC
* *
856669 TATGTTGTCATTTGGGACAAA
1 TATGTTGTCATTCGGAACAAA
856690 TATATGGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (23 bp):
TATGTTGTCATTCGGAACAAAAC
Found at i:856695 original size:23 final size:22
Alignment explanation
Indices: 856554--856695 Score: 95
Period size: 23 Copynumber: 6.2 Consensus size: 22
856544 TCGAGGGTTC
* * *
856554 TATGTGGTCATTCAGGACAAACC
1 TATGTTGTCATTCGGGACAAA-A
* * * * *
856577 TATATGGTCTTTCAGGACAAATT
1 TATGTTGTCATTCGGGACAAA-A
* *
856600 TATGTGGTCATTCGGGACAAACC
1 TATGTTGTCATTCGGGACAAA-A
*
856623 TATGTTGTCATTCGGAACAAAA
1 TATGTTGTCATTCGGGACAAAA
* * *
856645 CTATGTTCTCGTTCGGAACAAAA
1 -TATGTTGTCATTCGGGACAAAA
*
856668 CTATGTTGTCATTTGGGACAAATA
1 -TATGTTGTCATTCGGGACAAA-A
856692 TATG
1 TATG
856696 GCACTTCGGT
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
23 98 0.99
24 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (22 bp):
TATGTTGTCATTCGGGACAAAA
Found at i:861891 original size:27 final size:27
Alignment explanation
Indices: 861847--861907 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
861837 AATATTTGAT
* * *
861847 AATGCTATGTGACAATGTTCTACGTGA
1 AATGTTATGTGACAATGTGCTAAGTGA
**
861874 AATGTTATGTGATTATGTGCTAAGTGA
1 AATGTTATGTGACAATGTGCTAAGTGA
861901 ATATGTT
1 A-ATGTT
861908 CTGTTGAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (27 bp):
AATGTTATGTGACAATGTGCTAAGTGA
Found at i:865936 original size:433 final size:433
Alignment explanation
Indices: 865120--865982 Score: 1458
Period size: 433 Copynumber: 2.0 Consensus size: 433
865110 AACTAGTCCT
*
865120 AGATTCAAAAATCAATAGAACAGTGTTTTAAGAAATTTACCTTGGAATTTTAGGATTGAGAAGGA
1 AGATTCAAAAATCAATAGAACAATGTTTTAAGAAATTTACCTTGGAATTTTAGGATTGAGAAGGA
* *
865185 ATTGATGTTGTATGCACTGATTTTATTGAATCTAGCAGGATTAGAAGTTGAAGAACGATTGAATT
66 ATTGATGTTGTATGCACTGATTTTACTGAATCTAGCAGGATTAGAAGTAGAAGAACGATTGAATT
* * * *
865250 CCAACTTGTAGATGTTGGATTGAAGCAAGAAGGATTTTGGATTGAGTGAAGAGGAGAACGATATG
131 CCAACTTGTAGATGTTGGATTAAAGCAAGAAGGATTTGGGATTGAGAGAAGAGGAGAACGACATG
* *
865315 TGTTTATGATTTAAGGGTTTTGGTAAAAATGTAGTGATTTTAGGGTTTTATAGCCTAAACCCGAC
196 TGTTTATGATTTAAGGGTTTTGGCAAAAATGTAGTGATTTTAGGGTTATATAGCCTAAACCCGAC
* ** * *
865380 TAGTAGTATCGGTACTTTGTGAAGAGTATCGATACTTCAAGGCTTTTTAGAGTAGTATCGATACC
261 TAGTAGTATCGGTACTCTACGAAGAGTATCGATACTTCAAGGATTTTTAGAGTAGTATCAATACC
* * * *
865445 ATGATATCGATATCCATTCAAGTATTATCAGTACTGTAAGAATAATATCGATACTTGATAAGAAC
326 ATGATATCGATACCCATTCAAGTAGTATCAGTACTGTAAGAACAATATCGAAACTTGATAAGAAC
*
865510 AATATCGATACTAGGATAGTAGTATCGGTATCTAGCAAGAGGA
391 AATATCGATACTAGGATAGTAGTATCGGTACCTAGCAAGAGGA
865553 AGATTCAAAAATCAATAGAACAATGTTTTAAGAAATTTACCTTGGAATTTTAGGATTGAGAAGGA
1 AGATTCAAAAATCAATAGAACAATGTTTTAAGAAATTTACCTTGGAATTTTAGGATTGAGAAGGA
865618 ATTGATGTTGTATGCACTGATTTTACTGAATCTAGCAGGATTAGAAGTAGAAGAACGATTGAATT
66 ATTGATGTTGTATGCACTGATTTTACTGAATCTAGCAGGATTAGAAGTAGAAGAACGATTGAATT
* * * * *
865683 CCGACTTGTAGATGTTGGATTAAAGCAAGAAGGATTTGGGATTGAGAGAATATGAGAATGGCATG
131 CCAACTTGTAGATGTTGGATTAAAGCAAGAAGGATTTGGGATTGAGAGAAGAGGAGAACGACATG
*
865748 TTTTTATGATTTAAGGGTTTTGGCAAAAATGTAGTGATTTTAGGGTTATATAGCCTAAACCCGAC
196 TGTTTATGATTTAAGGGTTTTGGCAAAAATGTAGTGATTTTAGGGTTATATAGCCTAAACCCGAC
865813 TAGTAGTATCGGTACTCTACGAAGAGTATCGATACTTCAAGGATTTTTAGAGTAGTATCAATACC
261 TAGTAGTATCGGTACTCTACGAAGAGTATCGATACTTCAAGGATTTTTAGAGTAGTATCAATACC
* *
865878 ATGGTATCGATACCCATTCAAGTAGTAT-ATGTACTGTAAGAACATTATCGAAACTTGATAAGAA
326 ATGATATCGATACCCATTCAAGTAGTATCA-GTACTGTAAGAACAATATCGAAACTTGATAAGAA
*
865942 CAATATTGATACTAGGATAGTAGTATCGGTACCTAGCAAGA
390 CAATATCGATACTAGGATAGTAGTATCGGTACCTAGCAAGA
865983 AGAGTATTGA
Statistics
Matches: 401, Mismatches: 28, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
432 1 0.00
433 400 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (433 bp):
AGATTCAAAAATCAATAGAACAATGTTTTAAGAAATTTACCTTGGAATTTTAGGATTGAGAAGGA
ATTGATGTTGTATGCACTGATTTTACTGAATCTAGCAGGATTAGAAGTAGAAGAACGATTGAATT
CCAACTTGTAGATGTTGGATTAAAGCAAGAAGGATTTGGGATTGAGAGAAGAGGAGAACGACATG
TGTTTATGATTTAAGGGTTTTGGCAAAAATGTAGTGATTTTAGGGTTATATAGCCTAAACCCGAC
TAGTAGTATCGGTACTCTACGAAGAGTATCGATACTTCAAGGATTTTTAGAGTAGTATCAATACC
ATGATATCGATACCCATTCAAGTAGTATCAGTACTGTAAGAACAATATCGAAACTTGATAAGAAC
AATATCGATACTAGGATAGTAGTATCGGTACCTAGCAAGAGGA
Found at i:881500 original size:23 final size:23
Alignment explanation
Indices: 881470--881606 Score: 184
Period size: 23 Copynumber: 6.0 Consensus size: 23
881460 GTCGAGGGTT
*
881470 CTATGTGGTCCTTCGGAACAAAC
1 CTATGTGGTCCTTCGGGACAAAC
* *
881493 CTATGTGGTCTTTCGGGACAAAT
1 CTATGTGGTCCTTCGGGACAAAC
* *
881516 TTATGTGGTCCTTCGGGACAAAT
1 CTATGTGGTCCTTCGGGACAAAC
* * *
881539 TTATGTGGTCATTCGCGACAAAC
1 CTATGTGGTCCTTCGGGACAAAC
* *
881562 CTATGTGGTCATTCGGGACAAAA
1 CTATGTGGTCCTTCGGGACAAAC
881585 CTATGTGGTCCTTCGGGACAAA
1 CTATGTGGTCCTTCGGGACAAA
881607 TATATGGCAC
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 102 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (23 bp):
CTATGTGGTCCTTCGGGACAAAC
Found at i:881582 original size:69 final size:69
Alignment explanation
Indices: 881471--881612 Score: 223
Period size: 69 Copynumber: 2.1 Consensus size: 69
881461 TCGAGGGTTC
* * **
881471 TATGTGGTCCTTCGGAACAAACCTATGTGGTCTTTCGGGACAAATTTATGTGGTCCTTCGGGACA
1 TATGTGGTCATTCGGAACAAACCTATGTGGTCATTCGGGACAAAACTATGTGGTCCTTCGGGACA
*
881536 AATT
66 AATA
881540 TATGTGGTCATTCGCG-ACAAACCTATGTGGTCATTCGGGACAAAACTATGTGGTCCTTCGGGAC
1 TATGTGGTCATTCG-GAACAAACCTATGTGGTCATTCGGGACAAAACTATGTGGTCCTTCGGGAC
881604 AAATA
65 AAATA
881609 TATG
1 TATG
881613 GCACTTTGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
69 66 0.99
70 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (69 bp):
TATGTGGTCATTCGGAACAAACCTATGTGGTCATTCGGGACAAAACTATGTGGTCCTTCGGGACA
AATA
Found at i:884579 original size:13 final size:13
Alignment explanation
Indices: 884561--884589 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
884551 ATTTTGTATG
884561 ATTCTTGAATTTC
1 ATTCTTGAATTTC
884574 ATTCTTGAATTTC
1 ATTCTTGAATTTC
884587 ATT
1 ATT
884590 TGGAGAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (13 bp):
ATTCTTGAATTTC
Found at i:885647 original size:18 final size:18
Alignment explanation
Indices: 885624--885664 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
885614 GGATATATGG
*
885624 ATAGTGGTCTTTCGGGAC
1 ATAGTGGTCCTTCGGGAC
885642 ATAGTGGTCCTTCGGGAC
1 ATAGTGGTCCTTCGGGAC
885660 A-AGTG
1 ATAGTG
885665 AAGTGCCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (18 bp):
ATAGTGGTCCTTCGGGAC
Found at i:889242 original size:132 final size:133
Alignment explanation
Indices: 889028--889483 Score: 349
Period size: 134 Copynumber: 3.4 Consensus size: 133
889018 ATCCCTCTTT
* * * * * * ** * *
889028 TTTCCAGATTTGATCTTCTCTGAGGAACAGAGGAAGAAGTCTGGCTTAATTCAATCTTCCTTGAA
1 TTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATATTCCCT-AA
* * * * *
889093 A-AACT-GTTG-AATGAATCAACAT-TTACATACCTAATTTTCCCTTAAGAAGTAGCAGAACATA
65 ACAA-TAG-TGAAATAAATCAACATCCTACAT--CTAATTTTCCCTCAAGAAGAAGCAGAACAGA
889154 T-C-TCCC
126 TCCATCCC
* * * *
889160 TTTCAATATTTGATTTTCCCTTAGTAACAGTGGAACAAGTCTGTCTCGATTCAA-ACTTCCCTAA
1 TTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATA-TTCCCTAA
* * * *
889224 ACAATAGTGAAATAAATCAACGTCCCTAGATCTGATTTTCCCTCAAGAAGAAGCAGAATAGATCC
65 ACAATAGTGAAATAAATCAACAT-CCTACATCTAATTTTCCCTCAAGAAGAAGCAGAACAGATCC
*
889289 ATCTC
129 ATCCC
*
889294 TTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATATTCCCTAAT
1 TTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATATTCCCTAAA
* * * * * * * * * *
889359 GAATAGTGGAATGAATCAACATCCCCAGATCTGATTTTTCCCTTAATAAGCAA--AGGAAAAAAT
66 CAATAGTGAAATAAATCAACAT-CCTACATCT-AATTTTCCCTCAAGAAG-AAGCA-GAACAGAT
889422 CCA-CCTC
127 CCATCC-C
* ** * * *
889429 TTTCAAGATTTGTTCTTTTCTGACTATA-AGTAGAACAAGTTTGACTCGATTCAAT
1 TTTCAAGATTTGATCTTCCCTGAGTA-ACAGTGGAACAAGTCTGACTCGATTCAAT
889484 CTTACCAGAA
Statistics
Matches: 264, Mismatches: 46, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
131 6 0.02
132 89 0.34
133 1 0.00
134 94 0.36
135 71 0.27
136 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (133 bp):
TTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATATTCCCTAAA
CAATAGTGAAATAAATCAACATCCTACATCTAATTTTCCCTCAAGAAGAAGCAGAACAGATCCAT
CCC
Found at i:889335 original size:134 final size:134
Alignment explanation
Indices: 888936--889483 Score: 405
Period size: 135 Copynumber: 4.1 Consensus size: 134
888926 GCAAATCAAG
* * * * * * ** * *
888936 CTCGATTTAATCTTCCTTGAAAAAATAGTGGAATTAATCAACATTTCCATATATGATTTTCCCTT
1 CTCGATTCAATATTCCCT-AAACAATAGTGAAATAAATCAACATCCCCAGATCTGATTTTCCCTT
* * * * * * * * * * *
889001 AAGAAGCAGTC-TAACATATCCCTCTTTTTTCCAGATTTGATCTTCTCTGAGGAACAGAGGAAGA
65 AAGAAGAAG-CAGAAAAAATCCATC-TCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACA
*
889065 AGTCTGG
128 AGTCTGA
** * * * *** * * *
889072 CTTAATTCAATCTTCCTTGAAA-AACT-GTTG-AATGAATCAACATTTACATACCTAATTTTCCC
1 CTCGATTCAATATTCCCT-AAACAA-TAG-TGAAATAAATCAACATCCCCAGATCTGATTTTCCC
* * * * * * *
889134 TTAAGAAGTAGCAGAACATAT-C-TCCCTTTCAATATTTGATTTTCCCTTAGTAACAGTGGAACA
63 TTAAGAAGAAGCAGAAAAAATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACA
*
889197 AGTCTGT
128 AGTCTGA
* * *
889204 CTCGATTCAA-ACTTCCCTAAACAATAGTGAAATAAATCAACGTCCCTAGATCTGATTTTCCCTC
1 CTCGATTCAATA-TTCCCTAAACAATAGTGAAATAAATCAACATCCCCAGATCTGATTTTCCCTT
* *
889268 AAGAAGAAGCAGAATAGATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAG
65 AAGAAGAAGCAGAAAAAATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAG
889333 TCTGA
130 TCTGA
** * *
889338 CTCGATTCAATATTCCCTAATGAATAGTGGAATGAATCAACATCCCCAGATCTGATTTTTCCCTT
1 CTCGATTCAATATTCCCTAAACAATAGTGAAATAAATCAACATCCCCAGATCTGA-TTTTCCCTT
* * * ** * *
889403 AATAAGCAA--AGGAAAAAATCCACCTCTTTCAAGATTTGTTCTTTTCTGACTATA-AGTAGAAC
65 AAGAAG-AAGCA-GAAAAAATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTA-ACAGTGGAAC
*
889465 AAGTTTGA
127 AAGTCTGA
889473 CTCGATTCAAT
1 CTCGATTCAAT
889484 CTTACCAGAA
Statistics
Matches: 338, Mismatches: 60, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
131 6 0.02
132 91 0.27
133 3 0.01
134 93 0.28
135 120 0.36
136 25 0.07
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (134 bp):
CTCGATTCAATATTCCCTAAACAATAGTGAAATAAATCAACATCCCCAGATCTGATTTTCCCTTA
AGAAGAAGCAGAAAAAATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGT
CTGA
Found at i:889502 original size:135 final size:133
Alignment explanation
Indices: 889159--889511 Score: 381
Period size: 134 Copynumber: 2.6 Consensus size: 133
889149 ACATATCTCC
* * * * * * *
889159 CTTTCAATATTTGATTTTCCCTTAGTAACAGTGGAACAAGTCTGTCTCGATTCAAACTTCCCTAA
1 CTTTCAAGATTTGATCTTCCCTGACTAACAGTAGAACAAGTCTGACTCGATTCAATCTTCCCTAA
* * * * * *
889224 ACAATAGTGAAATAAATCAACGTCCCTAGATCTGATTTTCCCTCAAGAAGAAGCAGAATAGATCC
66 AGAATAGTGGAATAAATCAACATCCCCAGATCTGATTTTCCCTCAAGAAGAAG-AGAAAAAATCC
*
889289 ATCT
130 ACCT
* * *
889293 CTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTGACTCGATTCAATATTCCCTAA
1 CTTTCAAGATTTGATCTTCCCTGACTAACAGTAGAACAAGTCTGACTCGATTCAATCTTCCCTAA
* * * *
889358 TGAATAGTGGAATGAATCAACATCCCCAGATCTGATTTTTCCCTTAATAAGCAA-AGGAAAAAAT
66 AGAATAGTGGAATAAATCAACATCCCCAGATCTGA-TTTTCCCTCAAGAAG-AAGA-GAAAAAAT
889422 CCACCT
128 CCACCT
* ** * *
889428 CTTTCAAGATTTGTTCTTTTCTGACTATA-AGTAGAACAAGTTTGACTCGATTCAATCTTACC-A
1 CTTTCAAGATTTGATCTTCCCTGACTA-ACAGTAGAACAAGTCTGACTCGATTCAATCTTCCCTA
*
889491 GAAGAACAGTGGAA-AAATCAA
65 -AAGAATAGTGGAATAAATCAA
889512 AGTTTCTCGA
Statistics
Matches: 186, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
134 96 0.52
135 87 0.47
136 3 0.02
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (133 bp):
CTTTCAAGATTTGATCTTCCCTGACTAACAGTAGAACAAGTCTGACTCGATTCAATCTTCCCTAA
AGAATAGTGGAATAAATCAACATCCCCAGATCTGATTTTCCCTCAAGAAGAAGAGAAAAAATCCA
CCT
Found at i:889633 original size:19 final size:19
Alignment explanation
Indices: 889609--889646 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
889599 ATTTCTCTTC
889609 GTCTTTGCCCTATTCTTGT
1 GTCTTTGCCCTATTCTTGT
889628 GTCTTTGCCCTATTCTTGT
1 GTCTTTGCCCTATTCTTGT
889647 TGACATAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.26, G:0.16, T:0.53
Consensus pattern (19 bp):
GTCTTTGCCCTATTCTTGT
Found at i:890160 original size:21 final size:19
Alignment explanation
Indices: 890122--890167 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
890112 CTAAAATCCT
890122 ACTAAGTATTAAAGCTAAGA
1 ACTAA-TATTAAAGCTAAGA
890142 ACTAATATTAAGGAGCTAAGA
1 ACTAATATTAA--AGCTAAGA
890163 A-TAAT
1 ACTAAT
890168 GATTCAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTAATATTAAAGCTAAGA
Found at i:891760 original size:19 final size:19
Alignment explanation
Indices: 891736--891777 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
891726 TAGGTTGTCA
891736 AGGCAACAAATTATTCATC
1 AGGCAACAAATTATTCATC
891755 AGGCAACAAATTATTCATC
1 AGGCAACAAATTATTCATC
891774 AGGC
1 AGGC
891778 TTAGTTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.24
Consensus pattern (19 bp):
AGGCAACAAATTATTCATC
Found at i:900859 original size:3 final size:3
Alignment explanation
Indices: 900851--900884 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
900841 CAATTTTTAA
*
900851 TAT TAT TAT TAT TAT TAT T-T TTT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
900885 CATGTCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:903963 original size:33 final size:33
Alignment explanation
Indices: 903918--903981 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
903908 TGCTTGTTTT
903918 AATTTAGACACTATTATTAT-TTTGGTTCATTCG
1 AATTTAGACACTATTATTATATTT-GTTCATTCG
* *
903951 AATTTAGTCACTATTTTTATATTTGTTCATT
1 AATTTAGACACTATTATTATATTTGTTCATT
903982 TTAGTCCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (33 bp):
AATTTAGACACTATTATTATATTTGTTCATTCG
Found at i:918235 original size:20 final size:21
Alignment explanation
Indices: 918179--918236 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
918169 CATCAAGTCC
* *
918179 TTTGTGGAAGCCATAAAATCT
1 TTTGTCGAAGCCATGAAATCT
*
918200 TTTGTCGAAACCATGAAATCT
1 TTTGTCGAAGCCATGAAATCT
918221 TTTGTCG-AGCCATGAA
1 TTTGTCGAAGCCATGAA
918237 TTCCTGCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 8 0.24
21 25 0.76
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGTCGAAGCCATGAAATCT
Found at i:923306 original size:7 final size:7
Alignment explanation
Indices: 923297--923336 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
923287 TTGTCGCTTG
*
923297 CCATTTG
1 CCATTTC
923304 CCATTTC
1 CCATTTC
923311 CCATTTC
1 CCATTTC
923318 CCATTTC
1 CCATTTC
923325 CCATTTC
1 CCATTTC
923332 CCATT
1 CCATT
923337 CCCCCCCCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.15, C:0.40, G:0.03, T:0.42
Consensus pattern (7 bp):
CCATTTC
Found at i:923751 original size:16 final size:16
Alignment explanation
Indices: 923730--923760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
923720 TATTTCCGAT
*
923730 AATATATTATATTAAC
1 AATATAGTATATTAAC
923746 AATATAGTATATTAA
1 AATATAGTATATTAA
923761 GGTTATCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (16 bp):
AATATAGTATATTAAC
Found at i:932195 original size:22 final size:23
Alignment explanation
Indices: 932165--932212 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
932155 TCACGTTTTC
932165 AAAAGCTATTATTATCCTATTCG
1 AAAAGCTATTATTATCCTATTCG
* *
932188 AAAA-CTATTATTTTTCTATTCG
1 AAAAGCTATTATTATCCTATTCG
932210 AAA
1 AAA
932213 GCAGTAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.42
Consensus pattern (23 bp):
AAAAGCTATTATTATCCTATTCG
Found at i:936602 original size:118 final size:117
Alignment explanation
Indices: 936436--936706 Score: 287
Period size: 118 Copynumber: 2.3 Consensus size: 117
936426 TGCAAAGTAC
* * ** *
936436 TATAATAGTAAATAATTCTAAAAATAATATTTAAAATTATTATTTTAAAACTAAAG-GATTAAAA
1 TATAAT-GTAAATAATACT-AAAATATTATTTAAAATTAAAATATTAAAACT-AAGTGATT-AAA
* * * *
936500 TTGT-AAAATATCA-AAATTAAAAATCCTAATTCTAAATATCATGAAATCTAGGTAT
62 TTGTAAAAATAT-ATAAATTAAAAATCCTAATTCAAAATATCATAAAATATAGATAT
* * *
936555 TATTAATGTAAATAATCCTAAAATATTATTTAAAATTAAAATATTAAACCTCAGTGATTAAATTG
1 TA-TAATGTAAATAATACTAAAATATTATTTAAAATTAAAATATTAAAACTAAGTGATTAAATTG
*** * * *
936620 TAAAAATATATAAATTAATGGTCTTAATTCAAAATATTATAAAATATATATAT
65 TAAAAATATATAAATTAAAAATCCTAATTCAAAATATCATAAAATATAGATAT
*
936673 TAAAAGTGTAAATAATACTAAAATATTATTTAAA
1 TATAA-TGTAAATAATACTAAAATATTATTTAAA
936707 TATATGTAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
117 12 0.09
118 99 0.77
119 13 0.10
120 4 0.03
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (117 bp):
TATAATGTAAATAATACTAAAATATTATTTAAAATTAAAATATTAAAACTAAGTGATTAAATTGT
AAAAATATATAAATTAAAAATCCTAATTCAAAATATCATAAAATATAGATAT
Found at i:938039 original size:45 final size:45
Alignment explanation
Indices: 937962--938064 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
937952 CATATTTAAT
* * *
937962 GTGCATCGATGCA-CTCTTTAAAGAAGAAACATCGAATGCAATTG
1 GTGCATCGATGCATCCCCTTAAAGAAGAAACATCGAAGGCAATTG
* * *
938006 GTGCATCGATGCATCCCCTTAAA-ATGGAAACATCGAAGGTAATTT
1 GTGCATCGATGCATCCCCTTAAAGA-AGAAACATCGAAGGCAATTG
*
938051 GTGTATCGATGCAT
1 GTGCATCGATGCAT
938065 GGGTAGTGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 14 0.28
45 36 0.72
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (45 bp):
GTGCATCGATGCATCCCCTTAAAGAAGAAACATCGAAGGCAATTG
Found at i:938116 original size:20 final size:22
Alignment explanation
Indices: 938071--938128 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
938061 GCATGGGTAG
938071 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
938095 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
938115 TGCATCGATGCACT
1 TGCATCGATGCACT
938129 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:942249 original size:64 final size:63
Alignment explanation
Indices: 942133--942273 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 63
942123 CATATTTAAT
* * * *
942133 GTGCATCGATGCACTCTTTAAAGAAGAAACACCGAATGCAATTGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCCTTAAAGAAGAAACACCAAAGGCAATTGGTGCATCGATGCAT-AGGTA
* * * * *
942196 GTGCATCGATGCATCCCCTTAAA-ATAGAAACATCAAAGGTAATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCCTTAAAGA-AGAAACACCAAAGGCAATTGGTGCATCGATGCATAGGTA
942260 GTGCATCGATGCAC
1 GTGCATCGATGCAC
942274 ATGTTAAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
63 17 0.26
64 49 0.74
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (63 bp):
GTGCATCGATGCACCCCTTAAAGAAGAAACACCAAAGGCAATTGGTGCATCGATGCATAGGTA
Found at i:943047 original size:43 final size:41
Alignment explanation
Indices: 942965--943047 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 41
942955 GTGGTCCTTC
* * * *
942965 GAGACATATATGTATTCTTTGGAACATTTACAGGGTCTTAT
1 GAGACACATATGTATTCATTGAAACATGTACAGGGTCTTAT
* *
943006 GAGACACATATGTGATTCATTGAAATATGTACATGGTTCTTA
1 GAGACACATATGT-ATTCATTGAAACATGTACA-GGGTCTTA
943048 AGGAGTGGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
41 12 0.35
42 15 0.44
43 7 0.21
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (41 bp):
GAGACACATATGTATTCATTGAAACATGTACAGGGTCTTAT
Found at i:944363 original size:137 final size:137
Alignment explanation
Indices: 944110--944898 Score: 1157
Period size: 137 Copynumber: 5.8 Consensus size: 137
944100 CAACTGGTGT
* * * * *
944110 ATGACATTGTTCCTTCATGATGAGGACGTCTGACCATCTTTGAAGATATTTGAGATAACAAGGTT
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* ** * * * * *
944175 TCTTTATGATGAGGACGTCTGGTTATCTGAGGATGACT-CGATTCCTACGTGATGAGGAGTTCTG
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGA-TGTGACTCCTTCGTGATGAGGAGTTCTA
* *
944239 ATCGGTGG
130 ATTGGTAG
** * * *
944247 ATGACATTGTTCCTTCGTGATGAGGATGTTTGGCCATCTTTAAATATATTTGAGATAACACGGTC
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* * * * *
944312 CCTTCATGATGAGGACGTCTGGTTGTCTAAGGATGATGTGACTCATTCGTGATAAGGAGTTCTTA
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCGTGATGAGGAGTTCTAA
944377 TTGGTAG
131 TTGGTAG
* *
944384 ATGACATTGTTCCTTCGTGATGAGGACATCTGGTCATATTTAAAGATATTTGAGATAACACGGTT
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* *
944449 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGGTGATGTGACTCCTTCTTGATGAGGAGTTCTAA
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCGTGATGAGGAGTTCTAA
944514 TTGGTAG
131 TTGGTAG
* * * *
944521 ATGACATTGTTCCTTCATGATAAGGATATCTGGCCATCTTTAAAGATATTTGAGATAACATGGTT
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* * * *
944586 CCTTCGTGATGAGTACGTCTGGTTGTCTAAGGATAATGTGACTCTTTCGTGATGAGGAGTTCTAA
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCGTGATGAGGAGTTCTAA
944651 TTGGTAG
131 TTGGTAG
*
944658 ATGACATTGTTCCTTCGTGATGAGGACATCTGACCATCTTTAAAGATATTTGAGATAACACGGTT
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* * * * *
944723 CCTTCGTGATGAGGACGTATGGTTGTCTAAGGATGATGTGACTCCTTTGTAATGAGGAGTTCTGA
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCGTGATGAGGAGTTCTAA
944788 TTGGTAG
131 TTGGTAG
944795 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
1 ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
* *
944860 TCTTCGTGATGAGGACGTCTGGCTATCTAAGGATGATGT
66 CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGT
944899 TGATGGATAC
Statistics
Matches: 588, Mismatches: 63, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
136 1 0.00
137 587 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (137 bp):
ATGACATTGTTCCTTCGTGATGAGGACATCTGGCCATCTTTAAAGATATTTGAGATAACACGGTT
CCTTCGTGATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCGTGATGAGGAGTTCTAA
TTGGTAG
Found at i:950020 original size:20 final size:20
Alignment explanation
Indices: 949997--950045 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
949987 AAAAATGAAA
* *
949997 ATGTAAATACAAACGTAAAG
1 ATGTGAATACAAACGCAAAG
* *
950017 ATGTGAATGCAAATGCAAAG
1 ATGTGAATACAAACGCAAAG
950037 ATGTGAATA
1 ATGTGAATA
950046 TAAAATGAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.08, G:0.20, T:0.22
Consensus pattern (20 bp):
ATGTGAATACAAACGCAAAG
Found at i:950935 original size:45 final size:45
Alignment explanation
Indices: 950870--950955 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
950860 AAAAAGAAAT
* * *
950870 AAATAATGTACAACACACAAATATAATCTTTAAATCTAAAGGAAC
1 AAATAATATACAACAAACAAATATAATCTTTAAATATAAAGGAAC
* * *
950915 AAATAATATACAACAAACAAATTTATTCTTTCAATATAAAG
1 AAATAATATACAACAAACAAATATAATCTTTAAATATAAAG
950956 ACATATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (45 bp):
AAATAATATACAACAAACAAATATAATCTTTAAATATAAAGGAAC
Found at i:951848 original size:118 final size:116
Alignment explanation
Indices: 951682--951951 Score: 287
Period size: 118 Copynumber: 2.3 Consensus size: 116
951672 TGCAAAGTAC
* * ** *
951682 TATAATAGTAAATAATTCTAAAAATAATATTTAAAATTATTATTTTAAAACTAAAG-GATTAAAA
1 TATAAT-GTAAATAATCCT-AAAATATTATTTAAAATTAAAATATTAAAACT-AAGTGATT-AAA
* * *
951746 TTGT-AAAATATCA-AAATTAAAAATCCTAATTCTAAATATTATGAAAT-CTAGGTAT
62 TTGTAAAAATAT-ATAAATTAAAAATCCTAATTCAAAATATTA--AAATAATAGATAT
* *
951801 TATTAATGTAAATAATCCTAAAATATTATTTAAAATTAAAATATTAAACCTCAGTGATTAAATTG
1 TA-TAATGTAAATAATCCTAAAATATTATTTAAAATTAAAATATTAAAACTAAGTGATTAAATTG
** * *
951866 TAAAAATATATAAATTAAAGGTCTTAATTCAAAATATTAAAATAATATATAT
65 TAAAAATATATAAATTAAAAATCCTAATTCAAAATATTAAAATAATAGATAT
* *
951918 TAAAAGCGTAAATAATCCTAAAATATTATTTAAA
1 TATAA-TGTAAATAATCCTAAAATATTATTTAAA
951952 TATATGTAAA
Statistics
Matches: 129, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
116 6 0.05
117 44 0.34
118 62 0.48
119 13 0.10
120 4 0.03
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (116 bp):
TATAATGTAAATAATCCTAAAATATTATTTAAAATTAAAATATTAAAACTAAGTGATTAAATTGT
AAAAATATATAAATTAAAAATCCTAATTCAAAATATTAAAATAATAGATAT
Found at i:952256 original size:11 final size:11
Alignment explanation
Indices: 952237--952267 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
952227 AAGCTTCATT
952237 CACCGGCCGAC
1 CACCGGCCGAC
*
952248 CACCAGCCGAC
1 CACCGGCCGAC
952259 CACCGGCCG
1 CACCGGCCG
952268 GTCACTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.19, C:0.55, G:0.26, T:0.00
Consensus pattern (11 bp):
CACCGGCCGAC
Found at i:952296 original size:23 final size:22
Alignment explanation
Indices: 952237--952296 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 22
952227 AAGCTTCATT
*
952237 CACCGGCCGACCACCAGCCGAC
1 CACCGGCCGACCACTAGCCGAC
** *
952259 CACCGGCCGGTCACTATTCCGAC
1 CACCGGCCGACCACTA-GCCGAC
*
952282 CACCGGCCAACCACT
1 CACCGGCCGACCACT
952297 GTTCACGTCG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 13 0.43
23 17 0.57
ACGTcount: A:0.22, C:0.50, G:0.20, T:0.08
Consensus pattern (22 bp):
CACCGGCCGACCACTAGCCGAC
Found at i:952320 original size:19 final size:19
Alignment explanation
Indices: 952293--952338 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
952283 ACCGGCCAAC
* *
952293 CACTGTTCACGTCGTCGGT
1 CACTATTCACGTCATCGGT
952312 CACTATTCACGTCATCGGT
1 CACTATTCACGTCATCGGT
952331 CACTATTC
1 CACTATTC
952339 CGATCACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (19 bp):
CACTATTCACGTCATCGGT
Found at i:953063 original size:34 final size:34
Alignment explanation
Indices: 953022--953086 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
953012 ATTAATGTTA
*
953022 ATTATTTTGAATTTATTCATTTATTGAATATTTT
1 ATTATTTTGAATTTATTCATTGATTGAATATTTT
* * *
953056 ATTATTTTTAATTTATTTATTGATTTAATAT
1 ATTATTTTGAATTTATTCATTGATTGAATAT
953087 GTAAGATAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (34 bp):
ATTATTTTGAATTTATTCATTGATTGAATATTTT
Found at i:953935 original size:2 final size:2
Alignment explanation
Indices: 953921--954011 Score: 66
Period size: 2 Copynumber: 46.0 Consensus size: 2
953911 AATGTATGCG
* *
953921 TA TA TA -A TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* *
953963 TA TGA GTA TA TA T- TA T- TT TA -A TA TG TA TA TA TGA TA TA TA
1 TA T-A -TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
*
954003 -A CA TA TA TA
1 TA TA TA TA TA
954012 CTAAAAATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
1 5 0.07
2 61 0.85
3 5 0.07
4 1 0.01
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:957637 original size:22 final size:22
Alignment explanation
Indices: 957609--957653 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
957599 CTTATGCTTG
957609 CGGATATTACACTAAGCTAAAC
1 CGGATATTACACTAAGCTAAAC
957631 CGGATATTACACTAAGCTAAAC
1 CGGATATTACACTAAGCTAAAC
957653 C
1 C
957654 ATTTTCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.22
Consensus pattern (22 bp):
CGGATATTACACTAAGCTAAAC
Found at i:959054 original size:41 final size:41
Alignment explanation
Indices: 958997--959089 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
958987 GTAGTTAATC
958997 AAGGTAAAATTGTCAGATAATTATGGAATGACAGATTCTTT
1 AAGGTAAAATTGTCAGATAATTATGGAATGACAGATTCTTT
*
959038 AAGGTGAAATTGTCAGATAATTATGGAATGACAGATTCTTT
1 AAGGTAAAATTGTCAGATAATTATGGAATGACAGATTCTTT
959079 AAGGTAAAATT
1 AAGGTAAAATT
959090 ATGGATTTGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.33
Consensus pattern (41 bp):
AAGGTAAAATTGTCAGATAATTATGGAATGACAGATTCTTT
Found at i:965536 original size:3 final size:3
Alignment explanation
Indices: 965528--965556 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
965518 CTTCATTGCT
965528 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
965557 GTAAAACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:971818 original size:6 final size:6
Alignment explanation
Indices: 971807--971833 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
971797 TTACAAAAAG
971807 AATCAA AATCAA AATCAA AATCAA AAT
1 AATCAA AATCAA AATCAA AATCAA AAT
971834 ATATCCTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.15, G:0.00, T:0.19
Consensus pattern (6 bp):
AATCAA
Found at i:974402 original size:13 final size:13
Alignment explanation
Indices: 974384--974410 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
974374 TTTCCTACAC
974384 AACAACTATGACA
1 AACAACTATGACA
974397 AACAACTATGACA
1 AACAACTATGACA
974410 A
1 A
974411 TAGTAGTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.07, T:0.15
Consensus pattern (13 bp):
AACAACTATGACA
Found at i:974476 original size:17 final size:19
Alignment explanation
Indices: 974449--974484 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
974439 GATGAACATT
974449 ATTTATTAATA-ATATAAA
1 ATTTATTAATAGATATAAA
974467 ATTT-TTAATAGATATAAA
1 ATTTATTAATAGATATAAA
974485 TATAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTTATTAATAGATATAAA
Found at i:974661 original size:5 final size:5
Alignment explanation
Indices: 974651--974684 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
974641 TAAGGGTGTA
*
974651 TTCGG TTCGG TTCGG TTCGG TTCGA TTCGG TTCG
1 TTCGG TTCGG TTCGG TTCGG TTCGG TTCGG TTCG
974685 ATTTTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.03, C:0.21, G:0.35, T:0.41
Consensus pattern (5 bp):
TTCGG
Found at i:980518 original size:10 final size:10
Alignment explanation
Indices: 980503--980527 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
980493 TTTATATGTA
980503 ATATTATATG
1 ATATTATATG
980513 ATATTATATG
1 ATATTATATG
980523 ATATT
1 ATATT
980528 GTGTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
ATATTATATG
Found at i:981906 original size:23 final size:22
Alignment explanation
Indices: 981857--981925 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 22
981847 GTGTTATATT
* * **
981857 ATATTTTAAAAATATTAATTATT
1 ATATTTTAAATAT-TTTATTAAA
981880 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAATAT-TTTATTAAA
*
981903 ATATTATTAGATTATTTTATTAA
1 ATATT-TTA-AATATTTTATTAA
981926 TATTAAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 23 0.61
24 11 0.29
25 4 0.11
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (22 bp):
ATATTTTAAATATTTTATTAAA
Found at i:982107 original size:22 final size:23
Alignment explanation
Indices: 982079--982125 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
982069 TTGATTATTT
982079 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
982101 TATTATATTATTAGAAATATTAA
1 TATTATAATATTAAAAATATTAA
982124 TA
1 TA
982126 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:982130 original size:22 final size:21
Alignment explanation
Indices: 982087--982157 Score: 54
Period size: 23 Copynumber: 3.2 Consensus size: 21
982077 TTTATTATAA
*
982087 TATTAAAA-ATATAATATTATAT
1 TATTAAAATAT-TAATA-AATAT
982109 TATTAGAAATATTAATAAATAT
1 TATTA-AAATATTAATAAATAT
* * *
982131 ATTTTAAATATTTTAATAAATAA
1 -TATTAAA-ATATTAATAAATAT
982154 TATT
1 TATT
982158 TTGATTAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 14 0.35
23 24 0.60
24 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (21 bp):
TATTAAAATATTAATAAATAT
Found at i:982152 original size:55 final size:54
Alignment explanation
Indices: 982035--982196 Score: 126
Period size: 55 Copynumber: 3.1 Consensus size: 54
982025 ATTATTAAAA
* ** *
982035 TAAAAATATAATATCTTATATTATTATAATATAATTGATTATTTTATTATAATAT
1 TAAAAATATAATA-CTTATATTATTAAAATATAATAAATTATTTTATAATAATAT
*
982090 TAAAAATATAATA-TTATATTATTAGAAATATTAATAAATATATTTTA-AAT-ATTT
1 TAAAAATATAATACTTATATTATTA-AAATA-TAATAAAT-TATTTTATAATAATAT
* * * * *
982144 TAATAA-ATAATA-TT-T-TGATTAAATTTATATTAAAATATTTTAT--TAATAT
1 TAAAAATATAATACTTATATTATTAAA-ATATAATAAATTATTTTATAATAATAT
982193 TAAA
1 TAAA
982197 TTCATAAAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
48 1 0.01
49 13 0.15
50 8 0.09
51 7 0.08
52 1 0.01
53 19 0.21
54 12 0.13
55 21 0.24
56 7 0.08
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.49
Consensus pattern (54 bp):
TAAAAATATAATACTTATATTATTAAAATATAATAAATTATTTTATAATAATAT
Found at i:984199 original size:20 final size:22
Alignment explanation
Indices: 984174--984218 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
984164 TGTAGTTTTC
*
984174 AAAACAACATAA-TT-AAATCA
1 AAAACAACAAAATTTAAAATCA
*
984194 AAAACATCAAAATTTAAAATCA
1 AAAACAACAAAATTTAAAATCA
984216 AAA
1 AAA
984219 CAATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 2 0.10
22 9 0.43
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (22 bp):
AAAACAACAAAATTTAAAATCA
Found at i:989261 original size:30 final size:28
Alignment explanation
Indices: 989227--989282 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
989217 GACTAGATGA
989227 GAAATGAACATGAGATATATGAATATGAAT
1 GAAATG-ACATG-GATATATGAATATGAAT
* *
989257 GAAATGATATGGTTATATGAATATGA
1 GAAATGACATGGATATATGAATATGA
989283 GAAAAGGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.58
29 4 0.17
30 6 0.25
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.30
Consensus pattern (28 bp):
GAAATGACATGGATATATGAATATGAAT
Found at i:989294 original size:28 final size:27
Alignment explanation
Indices: 989242--989295 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 27
989232 GAACATGAGA
*
989242 TATATGAATATGAATGAAATGATATGGT
1 TATATGAATATGAA-GAAAGGATATGGT
989270 TATATGAATATG-AGAAAAGGTATATG
1 TATATGAATATGAAG-AAAGG-ATATG
989296 TGATAACATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 5 0.22
28 17 0.74
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (27 bp):
TATATGAATATGAAGAAAGGATATGGT
Done.