genome.fa.s8196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008196.1 Hibiscus syriacus cultivar Beakdansim tig00110815_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117950

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4165--4227	21	2.9	21	83	4	63	20	38	25	15	1.92
7670--7702	13	2.5	13	90	9	50	3	42	0	54	1.15
7804--7870	33	2.0	33	97	0	125	26	28	11	32	1.92
7989--8027	18	2.1	19	95	4	71	25	17	56	0	1.41
8043--8117	28	2.6	28	87	2	105	14	24	38	22	1.92
8514--8576	30	2.1	29	85	8	81	38	11	7	42	1.70
11760--11816	23	2.5	24	72	16	57	50	1	8	38	1.44
20870--20968	49	2.0	48	84	9	130	41	21	11	26	1.86
31445--31514	26	2.7	26	88	0	95	22	37	22	17	1.94
32907--32946	15	2.7	15	96	0	71	10	20	25	45	1.81
33207--33267	21	3.2	21	63	29	55	32	4	19	42	1.73
33199--33320	35	3.4	37	82	10	155	33	4	17	44	1.70
37796--37888	35	2.7	34	82	9	100	33	6	19	40	1.77
37831--37891	21	3.2	21	65	29	64	31	4	21	42	1.74
37830--37937	35	3.1	35	86	5	148	31	4	18	45	1.70
44810--44849	19	2.2	18	86	4	53	35	0	0	65	0.93
45591--45651	30	2.0	31	90	9	99	37	8	9	44	1.68
47346--47395	23	2.2	23	92	0	82	34	22	10	34	1.87
47813--47885	23	3.2	23	88	0	101	39	19	5	35	1.75
48308--48374	23	2.9	23	93	0	116	38	22	5	32	1.78
48797--48869	23	3.2	23	88	0	110	41	20	4	34	1.72
47358--50270	489	5.9	490	95	1	5138	40	11	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49286--49358	23	3.2	23	88	0	110	41	20	4	34	1.72
49774--49846	23	3.2	23	88	0	101	39	21	4	34	1.73
46943--50270	978	3.4	978	94	2	5661	40	10	7	41	1.68
50509--50533	11	2.3	11	100	0	50	36	24	8	32	1.84
52413--52703	21	13.9	21	73	15	133	21	18	24	34	1.96
52480--52610	61	2.1	62	91	2	210	21	17	25	35	1.95
52534--52675	42	3.3	42	93	2	239	19	19	25	35	1.95
52795--52851	5	11.0	5	88	1	69	36	40	22	0	1.55
53490--53579	19	4.5	19	80	10	99	33	24	20	22	1.97
53583--53635	21	2.5	21	84	0	70	16	16	32	33	1.92
64794--64838	15	3.2	14	84	9	56	40	0	4	55	1.20
67491--67604	61	1.9	61	82	8	144	34	13	13	39	1.83
68034--68140	52	2.0	53	90	3	171	42	15	22	19	1.89
73590--73625	2	18.0	2	100	0	72	50	0	0	50	1.00
79813--79973	43	3.7	43	80	3	164	31	19	24	23	1.98
79854--80124	43	6.3	43	75	9	171	26	21	22	29	1.99
79854--80098	86	2.8	85	77	7	215	27	20	22	29	1.98
80466--80525	21	2.9	21	87	0	75	1	41	16	40	1.58
80479--80585	21	5.1	20	85	6	108	2	40	19	37	1.66
80516--80575	21	2.9	21	100	0	120	3	35	23	38	1.71
86476--86636	40	4.0	41	92	2	256	32	16	16	34	1.91
86476--86636	81	2.0	81	90	4	254	32	16	16	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87914--87993	1	80.0	1	69	0	52	85	0	0	15	0.61
87914--88025	25	4.8	22	83	13	93	82	0	0	16	0.73
87912--88025	17	6.3	18	82	14	137	81	0	0	17	0.74
87912--88032	13	9.5	13	76	19	112	80	0	1	17	0.78
87914--88041	48	2.7	47	84	9	161	80	0	2	16	0.86
87912--88042	43	2.9	44	79	19	137	79	0	2	17	0.88
87912--88074	18	8.8	18	73	22	99	77	1	3	17	0.98
87912--88042	68	1.9	67	85	13	180	79	0	2	17	0.88
88193--88278	28	3.2	28	67	21	85	61	4	3	30	1.33
88189--88329	51	2.7	51	89	5	205	62	4	4	27	1.37
88284--88377	22	4.1	23	75	14	79	69	2	4	24	1.18
88333--88377	4	10.2	4	86	13	54	75	0	0	24	0.80
88333--88378	9	5.1	9	89	5	67	76	0	0	23	0.79
88335--88378	5	9.6	5	83	11	51	77	0	0	22	0.77
88333--88377	14	3.4	13	88	11	65	75	0	0	24	0.80
88539--88619	3	27.7	3	74	18	57	69	1	1	28	1.04
88481--88618	71	2.0	69	83	9	172	70	2	0	26	1.06
88537--88619	8	10.2	8	76	18	59	69	1	1	27	1.03
88518--88590	31	2.3	32	80	13	89	71	4	1	23	1.11
90745--90792	21	2.3	21	85	0	60	29	22	20	27	1.99
90872--90950	6	14.3	6	95	1	91	25	54	20	0	1.45
90912--90950	5	7.8	5	100	0	78	20	58	20	0	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91581--91675	21	4.5	21	85	5	111	27	23	23	26	2.00
91576--91656	42	1.9	42	94	0	144	25	22	24	27	2.00
91580--91675	42	2.3	42	88	0	138	28	22	22	26	1.99
92432--92498	17	3.7	19	80	17	88	43	10	29	16	1.81
92431--92508	17	4.5	17	81	13	81	42	10	26	20	1.84
92431--92516	32	2.5	34	83	10	97	41	9	27	20	1.83
92464--92516	15	3.4	15	87	7	70	39	9	28	22	1.85
94723--94834	24	4.7	24	94	0	188	34	22	20	22	1.96
98767--98798	2	16.0	2	100	0	64	50	0	0	50	1.00
108299--108363	23	2.9	23	76	4	69	16	24	27	30	1.97
112076--112109	3	11.3	3	100	0	68	32	0	0	67	0.91

Tables:   1

The End!