genome.fa.s8198.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008198.1 Hibiscus syriacus cultivar Beakdansim tig00110818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177714

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853--911	30	2.0	30	86	0	82	61	22	3	13	1.47
1480--1526	23	2.0	23	84	8	60	48	0	6	44	1.28
1730--1785	29	1.9	29	82	7	69	50	0	3	46	1.19
3188--3247	20	3.4	17	80	17	61	68	0	0	31	0.90
3215--3248	4	8.5	4	100	0	68	76	0	0	23	0.79
3482--4011	217	2.3	221	90	7	816	29	18	15	37	1.91
3631--4269	122	5.3	122	82	6	800	27	19	15	38	1.91
4559--4665	22	4.9	22	94	0	169	33	14	17	34	1.90
4559--4683	44	2.9	43	86	6	166	33	13	17	35	1.89
4645--4688	18	2.4	18	96	0	79	36	11	15	36	1.84
5475--5512	18	2.1	18	100	0	76	52	5	10	31	1.58
5870--5906	13	2.8	13	95	4	65	10	0	5	83	0.79
7701--8278	295	2.0	295	96	0	1057	32	20	14	32	1.93
17514--17569	29	1.9	29	82	7	69	48	0	5	46	1.25
28198--28228	2	15.5	2	100	0	62	51	0	0	48	1.00
35518--35578	3	20.0	3	80	9	70	37	1	1	59	1.17
36769--36832	27	2.3	27	81	7	76	23	7	6	62	1.45
36844--36891	15	3.4	14	80	11	53	31	0	2	66	1.03
36966--36996	15	2.0	16	93	6	55	45	0	0	54	0.99
43014--43066	16	3.2	16	76	12	63	73	0	22	3	0.99
42998--43066	32	2.2	32	86	5	95	73	0	21	4	1.00
45210--45429	114	1.9	114	92	0	368	33	15	21	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48521--48847	165	2.0	165	93	1	557	35	13	13	37	1.85
48886--49091	37	5.7	35	73	5	151	30	16	13	39	1.87
48886--49088	73	2.8	72	93	3	343	31	17	12	38	1.87
49497--49570	3	24.0	3	81	10	71	37	1	1	59	1.14
50772--50835	27	2.3	27	81	7	76	23	7	6	62	1.45
50847--50894	15	3.4	14	80	11	53	31	0	2	66	1.03
52074--52106	2	16.5	2	100	0	66	51	0	0	48	1.00
52300--52358	20	3.0	20	94	0	100	28	30	10	30	1.90
52836--53021	46	4.0	46	89	0	282	34	8	30	26	1.86
54270--54299	3	10.0	3	100	0	60	66	0	0	33	0.92
56474--56522	23	2.1	23	88	0	71	24	18	18	38	1.93
64719--64761	2	23.0	2	86	13	65	46	0	0	53	1.00
64719--64761	14	3.0	15	93	6	72	46	0	0	53	1.00
65614--65726	48	2.3	50	92	3	185	47	9	16	25	1.77
65667--65795	68	1.9	68	90	3	206	46	12	14	26	1.80
65661--65812	69	2.2	69	84	4	218	45	14	15	24	1.84
65913--65965	19	2.7	19	91	2	79	33	20	11	33	1.88
66041--66501	54	8.4	54	78	5	444	25	13	20	41	1.88
66051--66491	164	2.7	161	81	5	474	25	13	20	40	1.89
66790--66887	49	2.0	49	97	0	187	38	5	10	45	1.60
66867--67079	108	2.0	109	83	2	277	36	12	10	40	1.78
67951--67977	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70474--70548	24	3.2	23	74	12	80	0	18	1	80	0.79
70474--70547	11	6.4	11	74	11	58	0	18	1	79	0.80
70518--70659	78	1.9	75	82	7	178	11	22	9	56	1.63
84908--84972	3	21.3	3	96	3	121	66	0	0	33	0.92
99288--99346	12	5.1	12	78	12	61	66	1	0	32	1.02
99300--99349	22	2.3	22	86	10	68	68	2	0	30	1.01
99294--99360	21	3.2	21	79	12	66	64	2	0	32	1.09
101254--101370	28	4.1	28	93	3	191	17	19	16	46	1.85
102252--102306	18	3.3	18	66	23	57	54	7	1	36	1.39
102245--102326	31	2.6	31	100	0	164	54	4	3	36	1.39
131178--131320	74	2.0	72	83	5	180	39	18	11	30	1.87
132290--132371	31	2.6	31	90	0	128	13	18	41	26	1.87
132479--132592	32	3.6	32	93	0	192	11	23	27	37	1.89
134221--134563	14	25.0	14	69	15	134	48	2	4	44	1.36
134228--134511	28	10.4	28	73	10	153	48	2	5	43	1.40
134228--134483	42	5.9	42	74	15	211	48	2	5	43	1.40
134324--134471	50	3.1	50	68	21	154	46	3	6	43	1.45
134242--134562	70	4.7	70	79	11	283	48	2	4	44	1.37
134296--134520	92	2.4	96	87	9	345	47	3	5	44	1.41
135617--135667	21	2.4	21	100	0	102	35	17	17	29	1.93
137833--137861	2	14.5	2	100	0	58	51	0	0	48	1.00
138316--138356	10	4.2	10	87	3	57	26	29	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138316--138366	20	2.6	19	81	9	57	29	29	0	41	1.57
138412--138463	9	6.1	9	76	13	56	32	1	1	63	1.16
138411--138460	17	3.0	17	91	2	75	34	2	4	60	1.27
138420--138465	16	2.9	16	87	6	58	30	2	2	65	1.16
140432--140457	3	8.7	3	100	0	52	34	30	34	0	1.58
145371--145413	21	2.2	20	87	8	61	27	0	0	72	0.85
150095--150144	22	2.4	21	78	18	59	42	2	4	52	1.31
159308--159404	37	2.6	37	86	0	131	42	15	12	29	1.84
159766--159808	18	2.5	17	85	7	61	25	4	2	67	1.22
159897--159950	27	2.0	27	100	0	108	40	7	3	48	1.49
165800--166335	182	2.9	183	93	1	914	27	20	20	31	1.98
167476--167649	71	2.4	75	84	7	216	27	18	13	41	1.87
167476--167589	36	3.2	36	72	3	106	28	17	10	43	1.82
167492--167604	36	3.2	36	73	1	111	25	16	14	43	1.86
167492--167686	73	2.7	72	80	9	175	26	17	15	40	1.89
167720--168037	106	3.1	105	91	4	506	30	20	11	37	1.88
167937--168012	36	2.1	36	90	0	116	21	21	15	42	1.89
168212--168839	105	6.0	105	89	4	880	34	26	17	22	1.96
168212--168839	207	3.0	208	86	7	846	34	26	17	22	1.96
169378--169481	36	2.8	37	82	2	129	43	12	14	29	1.82
170434--170473	21	2.0	21	90	5	64	15	10	0	75	1.05
170455--170505	25	2.0	25	84	0	66	11	15	5	66	1.41

Tables:   1

The End!