Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008199.1 Hibiscus syriacus cultivar Beakdansim tig00110819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2638622
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 11
Found at i:1030151 original size:21 final size:20
Alignment explanation
Indices: 1030065--1030156 Score: 94
Period size: 21 Copynumber: 4.4 Consensus size: 20
1030055 CCTGTCATCT
** *
1030065 TTCAAGAGGCCCCTATCATCC
1 TTCAAGAGGCCCCTCCCA-CG
1030086 TTCAAGAGGCCCCTCCCACCG
1 TTCAAGAGGCCCCTCCCA-CG
* *
1030107 TTCAAGAGGCCCCTGTCAACG
1 TTCAAGAGGCCCCT-CCCACG
*
1030128 TTCAAGAGGTCCCTCCCACGG
1 TTCAAGAGGCCCCTCCCAC-G
1030149 TTCAAGAG
1 TTCAAGAG
1030157 CCCGATTCAC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
20 3 0.05
21 55 0.92
22 2 0.03
ACGTcount: A:0.23, C:0.37, G:0.21, T:0.20
Consensus pattern (20 bp):
TTCAAGAGGCCCCTCCCACG
Found at i:1030697 original size:20 final size:21
Alignment explanation
Indices: 1030671--1030717 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
1030661 ATCGAGTTAC
*
1030671 AATTTACATATTCGCGTTGCG
1 AATTTACATATTCACGTTGCG
1030692 -ATTTACATATTCACGTTGCG
1 AATTTACATATTCACGTTGCG
1030712 AATTTA
1 AATTTA
1030718 GAAATTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
AATTTACATATTCACGTTGCG
Found at i:1030829 original size:20 final size:20
Alignment explanation
Indices: 1030806--1030849 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1030796 TTCAAATTCA
*
1030806 CAACGCGAATATGTAAATCG
1 CAACGCGAATATATAAATCG
* *
1030826 CAACGCGAATTTATAATTCG
1 CAACGCGAATATATAAATCG
1030846 CAAC
1 CAAC
1030850 ACAGAAGTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.23
Consensus pattern (20 bp):
CAACGCGAATATATAAATCG
Found at i:1032277 original size:21 final size:21
Alignment explanation
Indices: 1032253--1032306 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
1032243 TGGTGCATGG
1032253 CGTGATGAGGTA-CGGT-CTTTA
1 CGTGATGAGGTATC--TACTTTA
*
1032274 CGTGGTGAGGTATCTACTTTA
1 CGTGATGAGGTATCTACTTTA
1032295 CGTGATGAGGTA
1 CGTGATGAGGTA
1032307 ACCACTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (21 bp):
CGTGATGAGGTATCTACTTTA
Found at i:1035181 original size:12 final size:12
Alignment explanation
Indices: 1035155--1035196 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1035145 TTTTTCGGCA
1035155 TTATTTATTTG-T
1 TTATTTA-TTGAT
1035167 TTATTTATTGAT
1 TTATTTATTGAT
* *
1035179 TTATGTATTAAT
1 TTATTTATTGAT
1035191 TTATTT
1 TTATTT
1035197 TTAGTGGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (12 bp):
TTATTTATTGAT
Found at i:1035370 original size:21 final size:21
Alignment explanation
Indices: 1035340--1035438 Score: 103
Period size: 21 Copynumber: 4.7 Consensus size: 21
1035330 GATTCACTTG
*
1035340 TCATCGTTCAAGAGGCCTCT-
1 TCATCATTCAAGAGGCCTCTA
*
1035360 CCTATCATTCAAGAGGCCTCTA
1 TC-ATCATTCAAGAGGCCTCTA
* *
1035382 TCATCCTTCAAGAGGCCCCTA
1 TCATCATTCAAGAGGCCTCTA
* * *
1035403 TCACCGTTCAAGAGGCC-CATG
1 TCATCATTCAAGAGGCCTC-TA
1035424 TCATCATTCAAGAGG
1 TCATCATTCAAGAGG
1035439 TCCCTCCCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
20 2 0.03
21 63 0.95
22 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (21 bp):
TCATCATTCAAGAGGCCTCTA
Found at i:1035392 original size:42 final size:41
Alignment explanation
Indices: 1035340--1035458 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 41
1035330 GATTCACTTG
*
1035340 TCATCGTTCAAGAGGCCTCTCCTATCATTCAAGAGGCCTC-TA
1 TCATCATTCAAGAGGCC-CTCCTATCATTCAAGAGGCC-CATA
* *
1035382 TCATCCTTCAAGAGG-CC-CCTATCACCGTTCAAGAGGCCCATG
1 TCATCATTCAAGAGGCCCTCCTATCA---TTCAAGAGGCCCATA
* *
1035424 TCATCATTCAAGAGGTCCCTCCCACCATTCAAGAG
1 TCATCATTCAAGAGG-CCCTCCTATCATTCAAGAG
1035459 CCCGATTCAC
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
39 7 0.11
40 1 0.02
41 2 0.03
42 48 0.74
44 2 0.03
45 5 0.08
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (41 bp):
TCATCATTCAAGAGGCCCTCCTATCATTCAAGAGGCCCATA
Found at i:1035452 original size:21 final size:20
Alignment explanation
Indices: 1035365--1035458 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 20
1035355 CCTCTCCTAT
1035365 CATTCAAGAGGCCTCTATCATC
1 CATTCAAGAGGCC-CTATCA-C
1035387 C-TTCAAGAGGCCCCTATCAC
1 CATTCAAGAGG-CCCTATCAC
* * *
1035407 CGTTCAAGAGGCCCATGTCAT
1 CATTCAAGAGGCCC-TATCAC
**
1035428 CATTCAAGAGGTCCCTCCCAC
1 CATTCAAGAGG-CCCTATCAC
1035449 CATTCAAGAG
1 CATTCAAGAG
1035459 CCCGATTCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
20 5 0.08
21 51 0.82
22 6 0.10
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (20 bp):
CATTCAAGAGGCCCTATCAC
Found at i:1036820 original size:14 final size:14
Alignment explanation
Indices: 1036801--1036833 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
1036791 AAATTGATGT
1036801 ATTTGTAAAAGTTG
1 ATTTGTAAAAGTTG
1036815 ATTTGTAAAAGTTG
1 ATTTGTAAAAGTTG
1036829 ATTTG
1 ATTTG
1036834 CTTAATTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
ATTTGTAAAAGTTG
Found at i:1036893 original size:78 final size:78
Alignment explanation
Indices: 1036801--1036962 Score: 261
Period size: 78 Copynumber: 2.1 Consensus size: 78
1036791 AAATTGATGT
1036801 ATTTGTAAAAGTTGATTTGTAAAAGTTGATTTGCTTAATTGATGAGGAAATAAGAATGATTTTTT
1 ATTTGTAAAAGTTGATTTGTAAAAGTTGATTTGCTTAATTGATGAGGAAATAAGAATGATTTTTT
1036866 GCTTGTTTAATTG
66 GCTTGTTTAATTG
* * * *** *
1036879 ATTTGTAAAAGTTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTTTT
1 ATTTGTAAAAGTTGATTTGTAAAAGTTGATTTGCTTAATTGATGAGGAAATAAGAATGATTTTTT
1036944 GCTTGTTTAATTG
66 GCTTGTTTAATTG
1036957 ATTTGT
1 ATTTGT
1036963 TGTTTTAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.49
Consensus pattern (78 bp):
ATTTGTAAAAGTTGATTTGTAAAAGTTGATTTGCTTAATTGATGAGGAAATAAGAATGATTTTTT
GCTTGTTTAATTG
Found at i:1036895 original size:14 final size:14
Alignment explanation
Indices: 1036876--1036912 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
1036866 GCTTGTTTAA
1036876 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
1036890 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
1036904 TTGATTTGT
1 TTGATTTGT
1036913 TTAATTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:1037081 original size:20 final size:20
Alignment explanation
Indices: 1037035--1037081 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
1037025 GCAACGCGAA
* *
1037035 TTGCGAAAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCACG
1037055 TTGCGATAGTCAAATTCACG
1 TTGCGATAGTCAAATTCACG
1037075 TTGCGAT
1 TTGCGAT
1037082 TTCGCGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCACG
Found at i:1039778 original size:12 final size:12
Alignment explanation
Indices: 1039757--1039790 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1039747 GGTTGCGGGT
*
1039757 TTTGAGATTGTG
1 TTTGATATTGTG
1039769 TTTGATATTGTG
1 TTTGATATTGTG
*
1039781 TTTGGTATTG
1 TTTGATATTG
1039791 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:1040648 original size:21 final size:20
Alignment explanation
Indices: 1040581--1040674 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
1040571 AACTAAAACC
* *
1040581 TGTTGCGAAATTAAAATTCG
1 TGTTGCGAATTTGAAATTCG
* * * *
1040601 TTTTGCCAATTCGAAAATCG
1 TGTTGCGAATTTGAAATTCG
*
1040621 AGTTGCGAATTTGAAATTCAG
1 TGTTGCGAATTTGAAATTC-G
1040642 TGTTGCGAATTTGGAAA-TCG
1 TGTTGCGAATTT-GAAATTCG
* *
1040662 CGTTGCAAATTTG
1 TGTTGCGAATTTG
1040675 GAAAATCGTA
Statistics
Matches: 58, Mismatches: 14, Indels: 5
0.75 0.18 0.06
Matches are distributed among these distances:
19 1 0.02
20 39 0.67
21 14 0.24
22 4 0.07
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (20 bp):
TGTTGCGAATTTGAAATTCG
Found at i:1040682 original size:21 final size:21
Alignment explanation
Indices: 1040613--1040682 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
1040603 TTGCCAATTC
1040613 GAAAATCGAGTTGCGAATTT-
1 GAAAATCGAGTTGCGAATTTG
* *
1040633 GAAATTCAGTGTTGCGAATTTG
1 GAAAATC-GAGTTGCGAATTTG
* *
1040655 G-AAATCGCGTTGCAAATTTG
1 GAAAATCGAGTTGCGAATTTG
1040675 GAAAATCG
1 GAAAATCG
1040683 TAATGCGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
20 19 0.45
21 22 0.52
22 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (21 bp):
GAAAATCGAGTTGCGAATTTG
Found at i:1040690 original size:41 final size:40
Alignment explanation
Indices: 1040645--1040743 Score: 92
Period size: 41 Copynumber: 2.5 Consensus size: 40
1040635 AATTCAGTGT
* *
1040645 TGCGAATTTGGAAATCGCGTTGCAAATTTGGAAAATCGTAA
1 TGCGAATTTGGAAATCGCCTTGCAAATTTGGAAAAT-GGAA
** * * * *
1040686 TGCG-ATTTACATATTCGCCTTGCGAATTTGGAAACTGGAT
1 TGCGAATTTGGA-AATCGCCTTGCAAATTTGGAAAATGGAA
*
1040726 TGCGAAATTGGAAATCGC
1 TGCGAATTTGGAAATCGC
1040744 AACGCGAATT
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
40 16 0.36
41 28 0.64
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (40 bp):
TGCGAATTTGGAAATCGCCTTGCAAATTTGGAAAATGGAA
Found at i:1040728 original size:20 final size:20
Alignment explanation
Indices: 1040705--1040771 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
1040695 CATATTCGCC
*
1040705 TTGCGAATTTGGAAACTGGA
1 TTGCGAATTTGGAAACTGAA
*
1040725 TTGCGAAATTGGAAA-TCGCAA
1 TTGCGAATTTGGAAACT-G-AA
*
1040746 -CGCGAATTTGGAAACTGAA
1 TTGCGAATTTGGAAACTGAA
1040765 TTGCGAA
1 TTGCGAA
1040772 ATTGTAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 3 0.08
20 33 0.87
21 2 0.05
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.25
Consensus pattern (20 bp):
TTGCGAATTTGGAAACTGAA
Found at i:1040791 original size:40 final size:40
Alignment explanation
Indices: 1040698--1040795 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
1040688 CGATTTACAT
* *
1040698 ATTCGCCTTGCGAATTTGGAAACTGGATTGCGAAATTGGA
1 ATTCGCATTGCGAATTTGGAAACTGAATTGCGAAATTGGA
* ** *
1040738 AATCGCAACGCGAATTTGGAAACTGAATTGCGAAATTGTA
1 ATTCGCATTGCGAATTTGGAAACTGAATTGCGAAATTGGA
* *
1040778 GTTCGCGTTGCGAATTTG
1 ATTCGCATTGCGAATTTG
1040796 TTGATCATTT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (40 bp):
ATTCGCATTGCGAATTTGGAAACTGAATTGCGAAATTGGA
Found at i:1048547 original size:2 final size:2
Alignment explanation
Indices: 1048540--1048567 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1048530 GGTTTGTCAA
1048540 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1048568 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1057571 original size:15 final size:15
Alignment explanation
Indices: 1057363--1057573 Score: 197
Period size: 15 Copynumber: 14.1 Consensus size: 15
1057353 GTCTGCATAT
*
1057363 TAATAATTCTGCTCG
1 TAATAATTCTGCTTG
* *
1057378 TATTAATTATGCTTG
1 TAATAATTCTGCTTG
* *
1057393 TGATAATTATGCTTG
1 TAATAATTCTGCTTG
* *
1057408 TAAAAATTATGCTTG
1 TAATAATTCTGCTTG
*
1057423 TAATAATTCTGCATG
1 TAATAATTCTGCTTG
* **
1057438 TAAAAATTCTGCTCA
1 TAATAATTCTGCTTG
* *
1057453 TATTAATTCTGCTCG
1 TAATAATTCTGCTTG
*
1057468 TAATAATTCTGCTCG
1 TAATAATTCTGCTTG
* *
1057483 TATTAATTCTACTTG
1 TAATAATTCTGCTTG
*
1057498 TGATAATTCTGCTTG
1 TAATAATTCTGCTTG
* **
1057513 TAAAAATTCTGCTCA
1 TAATAATTCTGCTTG
* **
1057528 TATTAATTCTGCTCA
1 TAATAATTCTGCTTG
*
1057543 TATTAATTCTGCTTG
1 TAATAATTCTGCTTG
*
1057558 TAATAATTATGCTTG
1 TAATAATTCTGCTTG
1057573 T
1 T
1057574 GTTGATAATG
Statistics
Matches: 162, Mismatches: 34, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 162 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (15 bp):
TAATAATTCTGCTTG
Found at i:1058880 original size:27 final size:27
Alignment explanation
Indices: 1058842--1058926 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 27
1058832 TTCATAACTA
1058842 CTACATCACTACAACCATCTCCATCAT
1 CTACATCACTACAACCATCTCCATCAT
1058869 CTACATCACTACCACCATCTCCATCTCCATCAT
1 CTACATCACTA-CA--A---CCATCTCCATCAT
* *
1058902 CTACACCACTACTACCATCTCCATC
1 CTACATCACTACAACCATCTCCATC
1058927 TCCATCTCCA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
27 22 0.44
28 2 0.04
30 2 0.04
32 1 0.02
33 23 0.46
ACGTcount: A:0.29, C:0.45, G:0.00, T:0.26
Consensus pattern (27 bp):
CTACATCACTACAACCATCTCCATCAT
Found at i:1058892 original size:6 final size:6
Alignment explanation
Indices: 1058883--1058938 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
1058873 ATCACTACCA
* *
1058883 CCATCT CCATCT CCATCAT CTA-CA CCACTACT ACCATCT CCATCT CCATCT
1 CCATCT CCATCT CCATC-T CCATCT CCA-T-CT -CCATCT CCATCT CCATCT
1058934 CCATC
1 CCATC
1058939 ACCACCACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 29 0.71
7 5 0.12
8 2 0.05
9 3 0.07
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (6 bp):
CCATCT
Found at i:1058894 original size:33 final size:33
Alignment explanation
Indices: 1058856--1058948 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
1058846 ATCACTACAA
1058856 CCATCTCCATCATCTACATCACTACCACCATCT
1 CCATCTCCATCATCTACATCACTACCACCATCT
* *
1058889 CCATCTCCATCATCTACACCACTACTACCATCT
1 CCATCTCCATCATCTACATCACTACCACCATCT
*
1058922 CCATCTCCATC-TC--CATCACCACCACCA
1 CCATCTCCATCATCTACATCACTACCACCA
1058949 CCACTGTCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
30 11 0.20
32 2 0.04
33 42 0.76
ACGTcount: A:0.27, C:0.48, G:0.00, T:0.25
Consensus pattern (33 bp):
CCATCTCCATCATCTACATCACTACCACCATCT
Found at i:1061599 original size:30 final size:32
Alignment explanation
Indices: 1061551--1061610 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
1061541 TACGTAAACG
*
1061551 ATGCAAACCCATGCCCCCTCTGTCA-AGAGGC
1 ATGCAAACCCATGCCCCCTCCGTCAGAGAGGC
*
1061582 ATGCAACCCCATG-CCCCTCCGTCAGAGAG
1 ATGCAAACCCATGCCCCCTCCGTCAGAGAG
1061611 TATTCCAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.25, C:0.40, G:0.20, T:0.15
Consensus pattern (32 bp):
ATGCAAACCCATGCCCCCTCCGTCAGAGAGGC
Found at i:1063762 original size:30 final size:30
Alignment explanation
Indices: 1063726--1063802 Score: 145
Period size: 30 Copynumber: 2.6 Consensus size: 30
1063716 AATATAGATT
*
1063726 GCCAGGTGATCTGGGCGACCAATGAAGGTC
1 GCCAGGTGGTCTGGGCGACCAATGAAGGTC
1063756 GCCAGGTGGTCTGGGCGACCAATGAAGGTC
1 GCCAGGTGGTCTGGGCGACCAATGAAGGTC
1063786 GCCAGGTGGTCTGGGCG
1 GCCAGGTGGTCTGGGCG
1063803 CCATGCCGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.18, C:0.23, G:0.42, T:0.17
Consensus pattern (30 bp):
GCCAGGTGGTCTGGGCGACCAATGAAGGTC
Found at i:1064040 original size:50 final size:50
Alignment explanation
Indices: 1063977--1064078 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
1063967 TTTATCCTAT
1063977 TTTAGTATGTATTTATTTTAAAATTGATTATTGGGATATCTTGTTTTGTA
1 TTTAGTATGTATTTATTTTAAAATTGATTATTGGGATATCTTGTTTTGTA
1064027 TTTAGTATGTATTTATTTTAAAATTGATTATTGGGATATCTTGTTTTGTA
1 TTTAGTATGTATTTATTTTAAAATTGATTATTGGGATATCTTGTTTTGTA
1064077 TT
1 TT
1064079 CAATAATTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.25, C:0.02, G:0.16, T:0.57
Consensus pattern (50 bp):
TTTAGTATGTATTTATTTTAAAATTGATTATTGGGATATCTTGTTTTGTA
Found at i:1070228 original size:22 final size:22
Alignment explanation
Indices: 1070211--1070277 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
1070201 CTCGTATAAA
1070211 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1070233 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1070255 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1070277 T
1 T
1070278 ATGTCCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:1070538 original size:30 final size:31
Alignment explanation
Indices: 1070497--1070556 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
1070487 TAGACATAGT
*
1070497 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
1070527 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
1070557 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:1071067 original size:67 final size:69
Alignment explanation
Indices: 1070930--1071069 Score: 196
Period size: 68 Copynumber: 2.1 Consensus size: 69
1070920 ATCGGTTCCC
* *
1070930 CCCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACGATGAGGGGGTATC
1 CCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGATGAGGGGGTATC
1070995 GGTT
66 GGTT
* * * *
1070999 CCCCCCC-TGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTC-ATTGAGGGGGTAT
1 CCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA-TGAGGGGGTAT
1071061 CGGTT
65 CGGTT
1071066 CCCC
1 CCCC
1071070 TTGAATGGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
66 1 0.02
67 22 0.34
68 34 0.53
69 7 0.11
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.28
Consensus pattern (69 bp):
CCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGATGAGGGGGTATC
GGTT
Found at i:1071086 original size:67 final size:67
Alignment explanation
Indices: 1070931--1071091 Score: 184
Period size: 68 Copynumber: 2.4 Consensus size: 67
1070921 TCGGTTCCCC
* *
1070931 CCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACGATGAGGGGGTATCG
1 CCCCCC-TGGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCATATACGATGAGGGGGTATCG
1070996 GTT
65 GTT
* * * *
1070999 CCCCCCCTGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTC-ATTGAGGGGGTATC
1 -CCCCCCTGGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA-TGAGGGGGTATC
1071062 GGTT
64 GGTT
* *
1071066 -CCCCTTGAATGGGTATCGATTCCCCT
1 CCCCCCTG--GGGGTATCGATTCCCCT
1071092 AACCCAGAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
65 6 0.08
66 1 0.01
67 33 0.41
68 34 0.43
69 6 0.08
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.29
Consensus pattern (67 bp):
CCCCCCTGGGGGTATCGATTCCCCTCAAGCAATCTGGAAATTCATATACGATGAGGGGGTATCGG
TT
Found at i:1077148 original size:22 final size:22
Alignment explanation
Indices: 1077131--1077197 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
1077121 CTCGTATAAA
1077131 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1077153 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1077175 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
1077197 T
1 T
1077198 ATGTCCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:1077458 original size:30 final size:31
Alignment explanation
Indices: 1077417--1077476 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
1077407 TAGACATAGT
*
1077417 ATTTCCATACCTTTAACACATAG-GCATATC
1 ATTTACATACCTTTAACACATAGTGCATATC
*
1077447 ATTTACATACCTTTATCACATAGTGCATAT
1 ATTTACATACCTTTAACACATAGTGCATAT
1077477 AACTTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATATC
Found at i:1077984 original size:67 final size:69
Alignment explanation
Indices: 1077834--1077986 Score: 213
Period size: 68 Copynumber: 2.2 Consensus size: 69
1077824 TTTTTCTCAT
* * *
1077834 GGGGGAATCGGTTCCCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACG
1 GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
1077899 ATGA
66 ATGA
* * * *
1077903 GGGGGTATCGGTTCCCCCCC-TGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTC-
1 GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
1077965 ATTGA
66 A-TGA
1077970 GGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
1077987 TTGAATGGGT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
66 1 0.01
67 22 0.29
68 34 0.45
69 19 0.25
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (69 bp):
GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
ATGA
Found at i:1077998 original size:67 final size:67
Alignment explanation
Indices: 1077834--1078008 Score: 194
Period size: 67 Copynumber: 2.6 Consensus size: 67
1077824 TTTTTCTCAT
* * * *
1077834 GGGGGAATCGGTTCCCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACG
1 GGGGGTATCGGTT-CCCCCC-TGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
1077899 ATGA
64 ATGA
* * *
1077903 GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTC-A
1 GGGGGTATCGGTT-CCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA
1077966 TTGA
65 -TGA
* *
1077970 GGGGGTATCGGTT-CCCCTTGAATGGGTACCGATTCCCCT
1 GGGGGTATCGGTTCCCCCCTG--GGGGTACCGATTCCCCT
1078009 AACCCAGAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
65 6 0.06
66 1 0.01
67 34 0.36
68 34 0.36
69 19 0.20
ACGTcount: A:0.18, C:0.27, G:0.26, T:0.28
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGAT
GA
Found at i:1086306 original size:20 final size:20
Alignment explanation
Indices: 1086281--1086332 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
1086271 TGGTTCACGG
*
1086281 AATGTAAGATTACCAGTGGT
1 AATGTAAGATTACCAGTGGA
1086301 AATGTAAGATTACCAGTGGA
1 AATGTAAGATTACCAGTGGA
1086321 AATGTAAGATTA
1 AATGTAAGATTA
1086333 TCAGAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (20 bp):
AATGTAAGATTACCAGTGGA
Found at i:1093923 original size:111 final size:111
Alignment explanation
Indices: 1093791--1094012 Score: 408
Period size: 111 Copynumber: 2.0 Consensus size: 111
1093781 GATGGAAAAT
* *
1093791 ATATCTCTACACTTTGTTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
1093856 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
1093902 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
1093967 TAATTAGTTTATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
1094013 TTTTTGTAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 107 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.46
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:1095838 original size:18 final size:18
Alignment explanation
Indices: 1095815--1095853 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1095805 TCAGGACGAC
* *
1095815 GACGACGATGACGATGGT
1 GACGACGACGACGATGAT
1095833 GACGACGACGACGATGAT
1 GACGACGACGACGATGAT
1095851 GAC
1 GAC
1095854 AGCGAGGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.36, T:0.13
Consensus pattern (18 bp):
GACGACGACGACGATGAT
Found at i:1095851 original size:21 final size:21
Alignment explanation
Indices: 1095812--1095851 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1095802 TGCTCAGGAC
*
1095812 GACGACGACGATGACGATGGT
1 GACGACGACGACGACGATGGT
*
1095833 GACGACGACGACGATGATG
1 GACGACGACGACGACGATG
1095852 ACAGCGAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.38, T:0.12
Consensus pattern (21 bp):
GACGACGACGACGACGATGGT
Found at i:1096100 original size:35 final size:35
Alignment explanation
Indices: 1096061--1096133 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
1096051 ATATTTCAGT
1096061 TAATTGTGTT-T-A-TTACCATTTAATATCAGTTATTG
1 TAATTGTGTTATCATTTACCATTTAAT-TC--TTATTG
*
1096096 TAATTTTGTTATCATTTACCATTTAATTCTTATTG
1 TAATTGTGTTATCATTTACCATTTAATTCTTATTG
1096131 TAA
1 TAA
1096134 GTTTGTTGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.53
36 1 0.03
37 3 0.09
38 12 0.35
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (35 bp):
TAATTGTGTTATCATTTACCATTTAATTCTTATTG
Found at i:1106913 original size:2 final size:2
Alignment explanation
Indices: 1106906--1106939 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
1106896 CAAATATGGA
*
1106906 TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1106940 ATATAGGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:1107327 original size:19 final size:18
Alignment explanation
Indices: 1107281--1107328 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
1107271 ATTTTTTTAA
*
1107281 TAAAAACCTAAAAAAATT
1 TAAAAACTTAAAAAAATT
* * *
1107299 TCAAATCTTAAAAAACTTT
1 TAAAAACTTAAAAAA-ATT
1107318 TAAAAACTTAA
1 TAAAAACTTAA
1107329 TTTTGATCCC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAACTTAAAAAAATT
Found at i:1108471 original size:2 final size:2
Alignment explanation
Indices: 1108464--1108490 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1108454 ATTAATGATA
1108464 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1108491 CATTTTAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1110397 original size:29 final size:29
Alignment explanation
Indices: 1110352--1110409 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1110342 GTGTTGGCCG
*
1110352 TAGGTCGCCATGCCTTCCGGGCGACCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
* *
1110381 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
1110410 AAGAGATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.14, C:0.36, G:0.28, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCCGGCGACCTAC
Found at i:1110462 original size:10 final size:10
Alignment explanation
Indices: 1110449--1110533 Score: 57
Period size: 10 Copynumber: 7.7 Consensus size: 10
1110439 ACACGCTGGG
1110449 CATCCGAGGC
1 CATCCGAGGC
1110459 CATCCGACTGAGGC
1 CAT-C--C-GAGGC
1110473 CATCCGACCGAGGC
1 CATCCGA--G-G-C
*
1110487 CATCTGAGAGC
1 CATCCGAG-GC
1110498 -ATCCGAGGC
1 CATCCGAGGC
1110507 CATCCGAGAG-
1 CATCCGAG-GC
1110517 CATCCGAGGC
1 CATCCGAGGC
1110527 CATCCGA
1 CATCCGA
1110534 CCGAGGCCAT
Statistics
Matches: 62, Mismatches: 2, Indels: 22
0.72 0.02 0.26
Matches are distributed among these distances:
9 3 0.05
10 33 0.53
11 4 0.06
12 4 0.06
13 3 0.05
14 15 0.24
ACGTcount: A:0.24, C:0.36, G:0.28, T:0.12
Consensus pattern (10 bp):
CATCCGAGGC
Found at i:1110473 original size:14 final size:14
Alignment explanation
Indices: 1110452--1110490 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
1110442 CGCTGGGCAT
1110452 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
1110466 CTGAGGCCATCCGA
1 CCGAGGCCATCCGA
1110480 CCGAGGCCATC
1 CCGAGGCCATC
1110491 TGAGAGCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.41, G:0.28, T:0.10
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:1110505 original size:20 final size:20
Alignment explanation
Indices: 1110480--1110533 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1110470 GGCCATCCGA
*
1110480 CCGAGGCCATCTGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
1110500 CCGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
1110520 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
1110534 CCGAGGCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.35, G:0.30, T:0.11
Consensus pattern (20 bp):
CCGAGGCCATCCGAGAGCAT
Found at i:1110539 original size:14 final size:14
Alignment explanation
Indices: 1110520--1110552 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1110510 CCGAGAGCAT
1110520 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
1110534 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
1110548 ACGAG
1 CCGAG
1110553 CTATGCGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:1110547 original size:10 final size:10
Alignment explanation
Indices: 1110480--1110533 Score: 67
Period size: 10 Copynumber: 5.4 Consensus size: 10
1110470 GGCCATCCGA
1110480 CCGAGGCCAT
1 CCGAGGCCAT
*
1110490 CTGAGAG-CAT
1 CCGAG-GCCAT
1110500 CCGAGGCCAT
1 CCGAGGCCAT
1110510 CCGAGAG-CAT
1 CCGAG-GCCAT
1110520 CCGAGGCCAT
1 CCGAGGCCAT
1110530 CCGA
1 CCGA
1110534 CCGAGGCCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 2 0.05
10 34 0.89
11 2 0.05
ACGTcount: A:0.24, C:0.35, G:0.30, T:0.11
Consensus pattern (10 bp):
CCGAGGCCAT
Found at i:1110650 original size:29 final size:29
Alignment explanation
Indices: 1110587--1110673 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
1110577 CCGAGCGAGG
*
1110587 GTAGGTCGCTCGG-AGTGCATGGCGACCTA
1 GTAGGTCGCCCGGAAG-GCATGGCGACCTA
** *
1110616 CAAGGTCGCCCGGAAGGCATGGCGACCTT
1 GTAGGTCGCCCGGAAGGCATGGCGACCTA
* * *
1110645 GTAGGTTGCCCGGAGGGCATGACGACCTA
1 GTAGGTCGCCCGGAAGGCATGGCGACCTA
1110674 TGTGTTGGGA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 45 0.96
30 2 0.04
ACGTcount: A:0.20, C:0.26, G:0.37, T:0.17
Consensus pattern (29 bp):
GTAGGTCGCCCGGAAGGCATGGCGACCTA
Found at i:1116130 original size:20 final size:21
Alignment explanation
Indices: 1116077--1116138 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
1116067 TTCCCCTGTG
1116077 GGGGGGAATCGGTTCCCCTTCAAA
1 GGGGGG-ATCGGTT-CCC-TCAAA
* *
1116101 GGGGGAATCGGTTCCCTC-AT
1 GGGGGGATCGGTTCCCTCAAA
*
1116121 GGGGGGATCGATTCCCTC
1 GGGGGGATCGGTTCCCTC
1116139 TGCAAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.26, G:0.35, T:0.23
Consensus pattern (21 bp):
GGGGGGATCGGTTCCCTCAAA
Found at i:1119985 original size:22 final size:21
Alignment explanation
Indices: 1119943--1119982 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1119933 GAGTTTGTTT
*
1119943 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
1119964 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
1119983 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:1126260 original size:21 final size:21
Alignment explanation
Indices: 1126236--1126297 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
1126226 GCAAATTCGC
1126236 GTTGCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
* **
1126257 GTTGAAAATCGCGTTGCGAT-
1 GTTGCATTTCGCGTTGCGATA
* *
1126277 TTTTCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
1126298 ACCTACAGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.39
Consensus pattern (21 bp):
GTTGCATTTCGCGTTGCGATA
Found at i:1126355 original size:22 final size:22
Alignment explanation
Indices: 1126328--1126381 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
1126318 TTTTCCAAAT
1126328 TCGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
*
1126350 TTGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
1126372 TCGTTGCGAT
1 TCGTTGCGAT
1126382 TTTGCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.39
Consensus pattern (22 bp):
TCGTTGCGATAGTCTACAGTTG
Found at i:1126447 original size:21 final size:21
Alignment explanation
Indices: 1126423--1126488 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
1126413 GCAAATTCGC
1126423 GTTGCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
* **
1126444 GTTGAAAATCGCGTTGCGAT-
1 GTTGCATTTCGCGTTGCGATA
* *
1126464 TTTCCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
1126485 GTTG
1 GTTG
1126489 AAAATGTCGT
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.38
Consensus pattern (21 bp):
GTTGCATTTCGCGTTGCGATA
Found at i:1126500 original size:41 final size:41
Alignment explanation
Indices: 1126427--1126526 Score: 152
Period size: 41 Copynumber: 2.5 Consensus size: 41
1126417 ATTCGCGTTG
1126427 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1126468 CATTTCGCGTTGCGATAGTTGAAAAT-GTCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCG-CGTTGCGATTTTC
*
1126509 CAAATT--CGTTGCGATAGT
1 C-ATTTCGCGTTGCGATAGT
1126527 CTACAGTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
40 13 0.23
41 40 0.71
42 3 0.05
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:1126501 original size:21 final size:20
Alignment explanation
Indices: 1126475--1126565 Score: 78
Period size: 21 Copynumber: 4.4 Consensus size: 20
1126465 TTCCATTTCG
1126475 CGTTGCGATAGTTGA-AAATGT
1 CGTTGCGATAGTT-ACAAAT-T
* *
1126496 CGTTGCGAT-TTTCCAAATT
1 CGTTGCGATAGTTACAAATT
**
1126515 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGT-TACAAAT-T
*
1126537 TGTTGCGATAGTTTACAAATT
1 CGTTGCGATAG-TTACAAATT
1126558 CGTTGCGA
1 CGTTGCGA
1126566 AAATTCGTTG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
19 10 0.18
20 7 0.13
21 21 0.38
22 16 0.29
23 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTTACAAATT
Found at i:1126671 original size:6 final size:6
Alignment explanation
Indices: 1126660--1126726 Score: 134
Period size: 6 Copynumber: 11.2 Consensus size: 6
1126650 GACACGTATT
1126660 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1126708 ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG A
1126727 GACGGACGGC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.34, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:1127221 original size:6 final size:6
Alignment explanation
Indices: 1127212--1127243 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
1127202 GCCGTCCGTC
1127212 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TC
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TC
1127244 ATACGTGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.47, T:0.34
Consensus pattern (6 bp):
TCGTGG
Found at i:1127450 original size:42 final size:42
Alignment explanation
Indices: 1127356--1127558 Score: 247
Period size: 41 Copynumber: 4.9 Consensus size: 42
1127346 TTTGTAAACT
* * *
1127356 ATCGCAACAACAACTGTAGACTATCGCAA--TGAATTTGGAAA
1 ATCGCAACGACAACTGTAGACTATCGCAACGCGAA-ATGGAAA
1127397 ATCGCAACGACAACTGTAGACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGACAACTGTAGACTATCGCAACGCGAAATGGAAA
*
1127439 ATCGCAACGACAACTGAAGACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGACAACTGTAGACTATCGCAACGCGAAATGGAAA
* *
1127481 ATCGCAACG-CAATTTTCA-ACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGACAACTGT-AGACTATCGCAACGCGAAATGGAAA
* * * *
1127522 ATTGCAACG-CGATTTTCA-ACTATCGCAACGCGAAATG
1 ATCGCAACGACAACTGT-AGACTATCGCAACGCGAAATG
1127559 CAATGCGAAT
Statistics
Matches: 150, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
41 90 0.60
42 57 0.38
43 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.18
Consensus pattern (42 bp):
ATCGCAACGACAACTGTAGACTATCGCAACGCGAAATGGAAA
Found at i:1127469 original size:22 final size:22
Alignment explanation
Indices: 1127353--1127469 Score: 88
Period size: 22 Copynumber: 5.5 Consensus size: 22
1127343 GAATTTGTAA
* *
1127353 ACTATCGCAACAACAACTGTAG
1 ACTATCGCAACGACAACTGAAG
* **
1127375 ACTATCGCAATGA-ATTTGGAA-
1 ACTATCGCAACGACAACT-GAAG
*
1127396 A--ATCGCAACGACAACTGTAG
1 ACTATCGCAACGACAACTGAAG
*
1127416 ACTATCGCAACG-CGAAATGGAA-
1 ACTATCGCAACGAC-AACT-GAAG
1127438 A--ATCGCAACGACAACTGAAG
1 ACTATCGCAACGACAACTGAAG
1127458 ACTATCGCAACG
1 ACTATCGCAACG
1127470 CGAAATGGAA
Statistics
Matches: 72, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
19 14 0.19
20 16 0.22
21 5 0.07
22 35 0.49
23 2 0.03
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (22 bp):
ACTATCGCAACGACAACTGAAG
Found at i:1127503 original size:83 final size:83
Alignment explanation
Indices: 1127356--1127530 Score: 239
Period size: 83 Copynumber: 2.1 Consensus size: 83
1127346 TTTGTAAACT
* * * *
1127356 ATCGCAACAACAACTGTAGACTATCGCAATGAATTTGGAAAATCGCAACGACAACTGTAGACTAT
1 ATCGCAACGACAACTGAAGACTATCGCAACGAATATGGAAAATCGCAACGACAACTGTAGACTAT
1127421 CGCAACGCGAAATGGAAA
66 CGCAACGCGAAATGGAAA
* *
1127439 ATCGCAACGACAACTGAAGACTATCGCAACGCGAA-ATGGAAAATCGCAACG-CAATTTTCA-AC
1 ATCGCAACGACAACTGAAGACTATCGCAA--CGAATATGGAAAATCGCAACGACAACTGT-AGAC
1127501 TATCGCAACGCGAAATGGAAA
63 TATCGCAACGCGAAATGGAAA
*
1127522 ATTGCAACG
1 ATCGCAACG
1127531 CGATTTTCAA
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
83 63 0.77
84 16 0.20
85 3 0.04
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (83 bp):
ATCGCAACGACAACTGAAGACTATCGCAACGAATATGGAAAATCGCAACGACAACTGTAGACTAT
CGCAACGCGAAATGGAAA
Found at i:1127553 original size:21 final size:21
Alignment explanation
Indices: 1127481--1127554 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 21
1127471 GAAATGGAAA
*
1127481 ATCGCAACGCAATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
1127502 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
*
1127522 ATTGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
1127543 ATCGCAACGCGA
1 ATCGCAACGCGA
1127555 AATGCAATGC
Statistics
Matches: 39, Mismatches: 13, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
20 14 0.36
21 25 0.64
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:1128357 original size:60 final size:60
Alignment explanation
Indices: 1128207--1128358 Score: 150
Period size: 60 Copynumber: 2.5 Consensus size: 60
1128197 TTTATCCTTA
* * * *
1128207 AACTTTTAAATATTTTAATTTTATCCCTCAAACTATGTCTCTCATTCTAAATTAGTCCTTC
1 AACTTTTGAATATTTCAATTTTATCCCT-AAACTATGCCTCTCATTCTAAATTAGTCCTCC
* * *
1128268 AACTTTTG-ATCA-TTCTAAATTCATCCCTAAACTATGACCT-TCTTTCTAAATTAGTCC-CC
1 AACTTTTGAAT-ATTTC-AATTTTATCCCTAAACTATG-CCTCTCATTCTAAATTAGTCCTCC
* *
1128327 AAATTTTTGAATATTTCAATTTTATTCCTAAA
1 -AACTTTTGAATATTTCAATTTTATCCCTAAA
1128359 GTCATCCAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
59 1 0.01
60 48 0.65
61 25 0.34
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (60 bp):
AACTTTTGAATATTTCAATTTTATCCCTAAACTATGCCTCTCATTCTAAATTAGTCCTCC
Found at i:1128587 original size:60 final size:59
Alignment explanation
Indices: 1128521--1128673 Score: 166
Period size: 60 Copynumber: 2.6 Consensus size: 59
1128511 AAGTTTGGGG
* *
1128521 ACTAATTTAGAATGAAGATCATAGTTTGGGGATGAAATT-AAAATGTTCAAAAGTTTAAGA
1 ACTAATTTAAAATGAAGATCATACTTTGGGGATGAAATTGAAAAT-TT-AAAAGTTTAAGA
* * * * * *
1128581 ACTAATTTAAAATGGCA-ATCATACTTTAGAGATGTAATTGGAACATTTAAAAGTTTATGA
1 ACTAATTTAAAAT-GAAGATCATACTTTGGGGATGAAATT-GAAAATTTAAAAGTTTAAGA
* *
1128641 ACTAATTTAAAATAAAGATCATACTTTGAGGAT
1 ACTAATTTAAAATGAAGATCATACTTTGGGGAT
1128674 ATGTGATATA
Statistics
Matches: 76, Mismatches: 13, Indels: 8
0.78 0.13 0.08
Matches are distributed among these distances:
59 1 0.01
60 67 0.88
61 4 0.05
62 4 0.05
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.33
Consensus pattern (59 bp):
ACTAATTTAAAATGAAGATCATACTTTGGGGATGAAATTGAAAATTTAAAAGTTTAAGA
Found at i:1129756 original size:22 final size:22
Alignment explanation
Indices: 1129726--1129777 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
1129716 ATTCAACTGT
* *
1129726 TATAACTCCTGAAATTATATCA
1 TATAACTCCTAAAATTAAATCA
*
1129748 TGTAACTCCTAAAATTAAATCA
1 TATAACTCCTAAAATTAAATCA
1129770 TATAACTC
1 TATAACTC
1129778 TTGTAACTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.04, T:0.35
Consensus pattern (22 bp):
TATAACTCCTAAAATTAAATCA
Found at i:1135428 original size:22 final size:22
Alignment explanation
Indices: 1135400--1135454 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1135390 ATTTAGCTGT
*
1135400 TATAACTCCTGAAATTATATCA
1 TATAACTCCTGAAATTAAATCA
1135422 TATAACTCCTGAAATTAAATCA
1 TATAACTCCTGAAATTAAATCA
1135444 TATAACTCCTG
1 TATAACTCCTG
1135455 TAACTCCTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (22 bp):
TATAACTCCTGAAATTAAATCA
Found at i:1138661 original size:32 final size:31
Alignment explanation
Indices: 1138619--1138702 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 31
1138609 GAAAGTTCGA
* *
1138619 GGCCACGGGGCCTACCTAAGAACACATCTTAG
1 GGCCGCGGGGCCTACCTAAGAACA-ATCTCAG
* ** *
1138651 GGCCGTGGGGCCTACCCGAGAATAATCTCAG
1 GGCCGCGGGGCCTACCTAAGAACAATCTCAG
* *
1138682 GGCCGCAGAGCCTACCTAAGA
1 GGCCGCGGGGCCTACCTAAGA
1138703 GTCACATTAG
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
31 22 0.54
32 19 0.46
ACGTcount: A:0.26, C:0.31, G:0.29, T:0.14
Consensus pattern (31 bp):
GGCCGCGGGGCCTACCTAAGAACAATCTCAG
Found at i:1142722 original size:80 final size:80
Alignment explanation
Indices: 1142635--1142819 Score: 316
Period size: 80 Copynumber: 2.3 Consensus size: 80
1142625 TTTGAGTCCA
* *
1142635 ATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGCCCCTTCGCTGTGAAGT
1 ATATCCTTCGTCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGCCCCTTCACTGTGAAGT
1142700 TGAGCTTTGAATTGG
66 TGAGCTTTGAATTGG
* *
1142715 ATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCACTGTGAAGT
1 ATATCCTTCGTCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGCCCCTTCACTGTGAAGT
1142780 TGAGCTTTGAATTGG
66 TGAGCTTTGAATTGG
* *
1142795 ATATCCTTAGTCGTGAAGTTAAAAT
1 ATATCCTTCGTCGTGAAGTTGAAAT
1142820 CTAAAAGTTG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (80 bp):
ATATCCTTCGTCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGCCCCTTCACTGTGAAGT
TGAGCTTTGAATTGG
Found at i:1143014 original size:124 final size:123
Alignment explanation
Indices: 1142762--1143299 Score: 611
Period size: 121 Copynumber: 4.5 Consensus size: 123
1142752 AAACTGGGAA
** *
1142762 GCCCCTTCACTGTGAAGTTGAGCTTTGAATTGGATATCCTT-AGTCGTGAAGTT--AA---AATC
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCA-TCGTGAAGTTGAAATCCAATC
* * ** *
1142821 TAAAAGTTGCATTGTTGCTTATGGGCACGATTCCCTTCGTCATGAAGTTGAAACCGTGGATG
65 T-AAAGAT--AATGTTGCTGGTGAGCACGATTCCCTTCGTCATGAAGTTGAAACCGTGGATG
*
1142883 ACCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCT
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCT
**
1142948 AAAGATAAATGTTGCTGGTGAGCACGATTCCCTTCGTTGTGAAGTTGAAACCGTGGATG
66 AAAGAT-AATGTTGCTGGTGAGCACGATTCCCTTCGTCATGAAGTTGAAACCGTGGATG
* ** **
1143007 GCGCCTTCGTTGTGAA---GAGCCTTGAATTTTATATCCTTTGTCGTGAAGTTGAAATCCAATCT
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCT
* * * *
1143069 TAATATGAATGTTGCTGGTGAGCATGATTCCCTTCGTCGTGAAGTTGAAACCGTGGATG
66 AAAGAT-AATGTTGCTGGTGAGCACGATTCCCTTCGTCATGAAGTTGAAACCGTGGATG
*
1143128 GCCCATTCGTTGTGAAGTTGAG-CTGTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATC
1 GCCCCTTCGTTGTGAAGTTGAGCCT-TGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATC
*
1143192 T--AG---A-G-T--T--T--GCACGATAT-CCTTCGTCATGAAGTTGAAATCGTGGATG
65 TAAAGATAATGTTGCTGGTGAGCACGAT-TCCCTTCGTCATGAAGTTGAAACCGTGGATG
* * *
1143238 GCCCCTTCGTTGTGAAGTTGAGCCTTGACTTGAATATCCTTCGTCGTGAAGTTGAAATCCAA
1 GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAA
1143300 GTATTGTATG
Statistics
Matches: 368, Mismatches: 37, Indels: 35
0.84 0.08 0.08
Matches are distributed among these distances:
110 88 0.24
111 3 0.01
112 1 0.00
114 1 0.00
116 1 0.00
117 1 0.00
118 1 0.00
121 157 0.43
122 2 0.01
123 4 0.01
124 99 0.27
125 5 0.01
126 5 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (123 bp):
GCCCCTTCGTTGTGAAGTTGAGCCTTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCT
AAAGATAATGTTGCTGGTGAGCACGATTCCCTTCGTCATGAAGTTGAAACCGTGGATG
Found at i:1143292 original size:110 final size:110
Alignment explanation
Indices: 1143099--1143299 Score: 332
Period size: 110 Copynumber: 1.8 Consensus size: 110
1143089 AGCATGATTC
* *
1143099 CCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCTGTGAATTGGATA
1 CCTTCGTCATGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCTGTGAATTGAATA
1143164 TCCTTCATCGTGAAGTTGAAATCCAATCTAGAGTTTGCACGATAT
66 TCCTTCATCGTGAAGTTGAAATCCAATCTAGAGTTTGCACGATAT
* * *
1143209 CCTTCGTCATGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCT-TGACTTGAAT
1 CCTTCGTCATGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAG-CTGTGAATTGAAT
*
1143273 ATCCTTCGTCGTGAAGTTGAAATCCAA
65 ATCCTTCATCGTGAAGTTGAAATCCAA
1143300 GTATTGTATG
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
110 82 0.98
111 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (110 bp):
CCTTCGTCATGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAGTTGAGCTGTGAATTGAATA
TCCTTCATCGTGAAGTTGAAATCCAATCTAGAGTTTGCACGATAT
Found at i:1143476 original size:299 final size:301
Alignment explanation
Indices: 1143140--1143716 Score: 894
Period size: 299 Copynumber: 1.9 Consensus size: 301
1143130 CCATTCGTTG
* *
1143140 TGAAGTTGAGCTGTGAATTGGATATCCTTCATCGTGAAGTTGAAATCCAATCTAGAGTTTGCACG
1 TGAAGTTGAGCTGTGAATTGGATATCATTCATCGTGAAGTTGAAATCCAATCTAGAGTTGGCACG
*
1143205 ATATCCTTCGTCATGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGACTTG
66 ATATCCTTCGTCATGAAGTTGAAATCATGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGACTTG
* * *
1143270 AATATCCTTCGTCGTGAAGTTGAAATCCAAGTATTGTATGTTGCTTTGAG-TTGTATATCATTCA
131 AATATCATCCATCGTGAAGTTGAAATCCAAGTATTGTATGTTGCTTTGAGTTTG-ATATCATTCA
* *
1143334 TTGTGAAGTTGAAATTCAATC-TAAATATGAA-TGT-T-CTTCGAGTCCAATATCTTTCGCCGTG
195 TTGTGAAGTTGAAATCCAATCTTAAATA--AATTGTGTCCTTCGAGTCCAATATCATTCGCCGTG
*
1143395 AAGTTAAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCGCCA
258 AAGTTAAAATTGACTCTGAATGAAACTGGGAAGCCCCTTCGCCA
* * *
1143439 TGAAGTTGAGCTTTGAATTGGATATCATTCGTCGTGAAGTTTAAATCCAATCTAGAGTTGGCACG
1 TGAAGTTGAGCTGTGAATTGGATATCATTCATCGTGAAGTTGAAATCCAATCTAGAGTTGGCACG
* *
1143504 ATATCCTTCGTCGTGAAGTTGAAATCATGGATGGCCCTTTCGTTGTGAAGTTGAGCCTTGACTTG
66 ATATCCTTCGTCATGAAGTTGAAATCATGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGACTTG
* *
1143569 AATATCATCCATCGTGAAGTTGAAATCCAAGTATTGTATGTTGCTTTGAGTTTGATATCCTTCGT
131 AATATCATCCATCGTGAAGTTGAAATCCAAGTATTGTATGTTGCTTTGAGTTTGATATCATTCAT
* * * *
1143634 TGTGAAGTTGAAATCCAATCTTGAGTAAATTGTGTCGCTTCGAGTTCAATATCATTCGCTGTGAA
196 TGTGAAGTTGAAATCCAATCTTAAATAAATTGTGTC-CTTCGAGTCCAATATCATTCGCCGTGAA
*
1143699 GTTGAAATTGACTCTGAA
260 GTTAAAATTGACTCTGAA
1143717 CGAGACTCGA
Statistics
Matches: 251, Mismatches: 21, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
298 2 0.01
299 200 0.80
300 8 0.03
302 41 0.16
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.35
Consensus pattern (301 bp):
TGAAGTTGAGCTGTGAATTGGATATCATTCATCGTGAAGTTGAAATCCAATCTAGAGTTGGCACG
ATATCCTTCGTCATGAAGTTGAAATCATGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGACTTG
AATATCATCCATCGTGAAGTTGAAATCCAAGTATTGTATGTTGCTTTGAGTTTGATATCATTCAT
TGTGAAGTTGAAATCCAATCTTAAATAAATTGTGTCCTTCGAGTCCAATATCATTCGCCGTGAAG
TTAAAATTGACTCTGAATGAAACTGGGAAGCCCCTTCGCCA
Found at i:1144318 original size:25 final size:25
Alignment explanation
Indices: 1144289--1144348 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
1144279 AAAAGAATCA
1144289 ATAGCTCTTTACCGCTTTCAGAGTT
1 ATAGCTCTTTACCGCTTTCAGAGTT
*
1144314 ATAGCTCTATACCGCTTTCAGAGTT
1 ATAGCTCTTTACCGCTTTCAGAGTT
1144339 ATAGCTCTTT
1 ATAGCTCTTT
1144349 GACAAATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (25 bp):
ATAGCTCTTTACCGCTTTCAGAGTT
Found at i:1147425 original size:13 final size:13
Alignment explanation
Indices: 1147407--1147437 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1147397 CCAGAAATGT
*
1147407 GTCGGGTTCGGGA
1 GTCGGGTTCGAGA
1147420 GTCGGGTTCGAGA
1 GTCGGGTTCGAGA
1147433 GTCGG
1 GTCGG
1147438 TTACAGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.16, G:0.52, T:0.23
Consensus pattern (13 bp):
GTCGGGTTCGAGA
Found at i:1149109 original size:2 final size:2
Alignment explanation
Indices: 1149102--1149126 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1149092 TTAGAGAAGT
1149102 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1149127 TGAGCTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1152605 original size:30 final size:29
Alignment explanation
Indices: 1152565--1152631 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
1152555 TCATTTGCAC
* * *
1152565 AAAAAATTATTT-GATTTTTTGATATTTTAT
1 AAAATATTATTTAGAATTTTT-A-ATTTAAT
1152595 AAAATATTATTTAGAATTTTTAATTTAAT
1 AAAATATTATTTAGAATTTTTAATTTAAT
1152624 AATAATAT
1 AA-AATAT
1152632 ATATCGTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.25
30 17 0.53
31 7 0.22
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (29 bp):
AAAATATTATTTAGAATTTTTAATTTAAT
Found at i:1152817 original size:23 final size:23
Alignment explanation
Indices: 1152791--1152849 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
1152781 AACCACTACC
1152791 TATTACATTATATAAACGATACA
1 TATTACATTATATAAACGATACA
* * *
1152814 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACA
*
1152837 TATTACATCATAT
1 TATTACATTATAT
1152850 TTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACA
Found at i:1154257 original size:183 final size:183
Alignment explanation
Indices: 1153748--1154240 Score: 844
Period size: 183 Copynumber: 2.7 Consensus size: 183
1153738 TTAAAATTAC
* *
1153748 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGGCATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1153813 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * *
1153878 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAATTTATCTATTACATTACAAATATGGGTTCCGATGTGTAAATGT
* *
1153931 CGATACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
1153996 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAATCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
1154061 ATATTACAAATTTATCTATTACATTACAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAATTTATCTATTACATTACAAATATGGGTTCCGATGTGTAAATGT
* *
1154114 CGACACTTTTTAACAAT-GTATCGACACATTTTTTTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
1154178 GATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
1154241 ATAGCATTGC
Statistics
Matches: 292, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 289 0.99
184 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAATTTATCTATTACATTACAAATATGGGTTCCGATGTGTAAATGT
Found at i:1155647 original size:3 final size:3
Alignment explanation
Indices: 1155639--1155683 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
1155629 ACTTGTTTGG
* * * *
1155639 ATC ATC ATC TTC ATC ATC ATC GTC ATC ATC GTC ATC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1155684 GCCAGCTTCA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.24, C:0.33, G:0.04, T:0.38
Consensus pattern (3 bp):
ATC
Found at i:1155656 original size:12 final size:12
Alignment explanation
Indices: 1155643--1155731 Score: 106
Period size: 12 Copynumber: 7.4 Consensus size: 12
1155633 GTTTGGATCA
* *
1155643 TCATCTTCATCA
1 TCATCGTCATCT
*
1155655 TCATCGTCATCA
1 TCATCGTCATCT
* *
1155667 TCGTCATCATCT
1 TCATCGTCATCT
* *
1155679 TCATCGCCAGCT
1 TCATCGTCATCT
1155691 TCATCGTCATCT
1 TCATCGTCATCT
1155703 TCATCGTCATCT
1 TCATCGTCATCT
*
1155715 TCATCGTCAGCT
1 TCATCGTCATCT
1155727 TCATC
1 TCATC
1155732 TTCTGCGACC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 66 1.00
ACGTcount: A:0.19, C:0.35, G:0.09, T:0.37
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:1155695 original size:36 final size:36
Alignment explanation
Indices: 1155655--1155731 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
1155645 ATCTTCATCA
*
1155655 TCATCGTCATCATCGTCATCATCTTCATCGCCAGCT
1 TCATCGTCATCATCATCATCATCTTCATCGCCAGCT
* * *
1155691 TCATCGTCATCTTCATCGTCATCTTCATCGTCAGCT
1 TCATCGTCATCATCATCATCATCTTCATCGCCAGCT
1155727 TCATC
1 TCATC
1155732 TTCTGCGACC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.18, C:0.35, G:0.10, T:0.36
Consensus pattern (36 bp):
TCATCGTCATCATCATCATCATCTTCATCGCCAGCT
Found at i:1155734 original size:6 final size:6
Alignment explanation
Indices: 1155643--1155734 Score: 76
Period size: 6 Copynumber: 15.3 Consensus size: 6
1155633 GTTTGGATCA
* * * * * * * *
1155643 TCATCT TCATCA TCATCG TCATCA TCGTCA TCATCT TCATCG CCAGCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
1155691 TCATCG TCATCT TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
1155735 TGCGACCGCT
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.18, C:0.35, G:0.09, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:1157556 original size:199 final size:200
Alignment explanation
Indices: 1157197--1158557 Score: 2426
Period size: 199 Copynumber: 6.9 Consensus size: 200
1157187 TTTAAATTAG
*
1157197 TATCGACACAAACTAAA--ACGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
1 TATCGACACAAACTAAATTA-GTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAA
* *
1157260 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGG
65 ACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGG
1157324 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAA
130 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAA
1157389 CAAAAA
195 CAAAAA
*
1157395 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
* * *
1157460 CTTGTACTGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-ATTCGATGATTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
1157524 TCGATACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
1157589 AAAAA
196 AAAAA
1157594 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
* * *
1157659 CTTGTACTGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-ATTCGATGATTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
1157723 TCGATACTTTTTATATATGGATCGACAC-TTAT--G-GCACCCTGTTTTACATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
1157784 AAAAA
196 AAAAA
1157789 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1157854 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
1157919 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
1157984 AAAAA
196 AAAAA
*
1157989 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACAAATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1158054 CTTG--CCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
1158117 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
1158182 AAAAA
196 AAAAA
1158187 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
*
1158252 CTTGTACCGGTTAGATTGAAAAATTGCATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
*
1158317 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
*
1158382 AACAA
196 AAAAA
1158387 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATA-T-TCTC-TAAAACCGGTAAA
1 TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
1158449 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
1158514 TTGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCT
1158558 ATTGGCCATA
Statistics
Matches: 1131, Mismatches: 23, Indels: 19
0.96 0.02 0.02
Matches are distributed among these distances:
195 143 0.13
196 42 0.04
197 124 0.11
198 221 0.20
199 331 0.29
200 270 0.24
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
TATCGACACAAACTAAATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAAA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAC
AAAAA
Found at i:1158725 original size:19 final size:19
Alignment explanation
Indices: 1158679--1158727 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
1158669 TTATATTCAC
*
1158679 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
1158698 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
1158717 ATACAAAATTA
1 ATACAAAATTA
1158728 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:1160318 original size:25 final size:27
Alignment explanation
Indices: 1160276--1160326 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
1160266 ATAACATTGA
1160276 CTTCCTCCTCACT-TCTTTCTCTCTTCTT
1 CTTCCTCCTCACTCT-TTTCT-TCTTCTT
1160304 CTTCCTCCTC-C-CTTTTCTTCTTC
1 CTTCCTCCTCACTCTTTTCTTCTTC
1160327 ATATTTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 5 0.23
26 5 0.23
27 2 0.09
28 10 0.45
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.53
Consensus pattern (27 bp):
CTTCCTCCTCACTCTTTTCTTCTTCTT
Found at i:1160627 original size:21 final size:21
Alignment explanation
Indices: 1160602--1160646 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
1160592 CCCCCTTATG
1160602 TCTCTCAAGTGTATCTTCGAC
1 TCTCTCAAGTGTATCTTCGAC
* *
1160623 TCTCTCAAGTTTCTCTTCGAC
1 TCTCTCAAGTGTATCTTCGAC
1160644 TCT
1 TCT
1160647 TGATTGTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
TCTCTCAAGTGTATCTTCGAC
Found at i:1162867 original size:17 final size:18
Alignment explanation
Indices: 1162845--1162887 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
1162835 ATATATCCGG
1162845 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
1162862 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
1162882 TATCAT
1 TATCAT
1162888 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:1162905 original size:20 final size:19
Alignment explanation
Indices: 1162850--1162896 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
1162840 TCCGGTATCA
1162850 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
1162869 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
1162890 TTTTACC
1 TTTTACC
1162897 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:1163395 original size:225 final size:226
Alignment explanation
Indices: 1163126--1163610 Score: 886
Period size: 228 Copynumber: 2.2 Consensus size: 226
1163116 ACTTTTATAC
1163126 GTATGGACACTTTTAT-AAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1163190 TTTTAATA-GTTTCATGTTTTCCACCTACAAT-TTAATTTAATAATTTCATTTACACAAAAAATT
66 TTTTAATAGGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
1163253 ATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGA
131 ATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGA
*
1163318 TAATAATAAATATGTTTTCCACAGTGAAATAA
196 TAATAATAAATATATTTT-CACAGTGAAATAA
*
1163350 GTATGGACACTTTTATAAAAATGATATATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
1163415 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAAT
66 TTTTAATAG-GTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
1163480 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
130 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
1163545 ATAATAATAAATATATTTTCACAGTGAAATAA
195 ATAATAATAAATATATTTTCACAGTGAAATAA
* *
1163577 GTATGGACACTTTTATAAAAAGGATAAATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
1163611 ACAATATAAC
Statistics
Matches: 251, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
224 16 0.06
225 55 0.22
227 67 0.27
228 113 0.45
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (226 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATT
ATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGA
TAATAATAAATATATTTTCACAGTGAAATAA
Found at i:1163873 original size:11 final size:11
Alignment explanation
Indices: 1163857--1163881 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1163847 ATCCGATACT
1163857 ACCGTATATTA
1 ACCGTATATTA
1163868 ACCGTATATTA
1 ACCGTATATTA
1163879 ACC
1 ACC
1163882 CGCCTTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (11 bp):
ACCGTATATTA
Found at i:1165620 original size:21 final size:22
Alignment explanation
Indices: 1165596--1165639 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
1165586 AAAATAAGAT
1165596 TTTTAAAAAATAATATT-TAAA
1 TTTTAAAAAATAATATTATAAA
* *
1165617 TTTTAAATATTAATATTATAAA
1 TTTTAAAAAATAATATTATAAA
1165639 T
1 T
1165640 AAAATAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTAAAAAATAATATTATAAA
Found at i:1168299 original size:22 final size:19
Alignment explanation
Indices: 1168281--1168320 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
1168271 TATTTCTTAG
1168281 ATTTTTTAAATTCAATTCTT
1 ATTTTTTAAATT-AATTCTT
*
1168301 ATTTTTTACATTAATT-TT
1 ATTTTTTAAATTAATTCTT
1168319 AT
1 AT
1168321 GGTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 11 0.58
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTTTAAATTAATTCTT
Found at i:1170930 original size:40 final size:39
Alignment explanation
Indices: 1170897--1170971 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
1170887 TATTATTATT
* * *
1170897 TTCAACTTGAAAAGTTATATAAATTTATTATATTTTTTA
1 TTCAACCTAAAAAATTATATAAATTTATTATATTTTTTA
* * *
1170936 TTTAACCTAAAAAATTATATAAATTTCTAATATTTT
1 TTCAACCTAAAAAATTATATAAATTTATTATATTTT
1170972 CAGTTTAATC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 30 1.00
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (39 bp):
TTCAACCTAAAAAATTATATAAATTTATTATATTTTTTA
Found at i:1170979 original size:39 final size:39
Alignment explanation
Indices: 1170906--1170986 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
1170896 TTTCAACTTG
* * *
1170906 AAAAGTTATATAAATTTATTATATTTTTTATTTAACCTA
1 AAAAATTATATAAATTTATAATATTTTTCATTTAACCTA
* *
1170945 AAAAATTATATAAATTTCTAATA-TTTTCAGTTTAATCTA
1 AAAAATTATATAAATTTATAATATTTTTCA-TTTAACCTA
1170984 AAA
1 AAA
1170987 TGTCACTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
38 5 0.14
39 31 0.86
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.47
Consensus pattern (39 bp):
AAAAATTATATAAATTTATAATATTTTTCATTTAACCTA
Found at i:1173852 original size:31 final size:31
Alignment explanation
Indices: 1173814--1173880 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
1173804 ATAGGTGAGA
1173814 GACTAAAATCAAACGGA-TCGATAACATTATG
1 GACTAAAATCAAACGGACT-GATAACATTATG
*
1173845 GACTAAAATCAAACGGACTGATAACGTTATG
1 GACTAAAATCAAACGGACTGATAACATTATG
*
1173876 AACTA
1 GACTA
1173881 TTTCCCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 32 0.97
32 1 0.03
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.22
Consensus pattern (31 bp):
GACTAAAATCAAACGGACTGATAACATTATG
Found at i:1174062 original size:2 final size:2
Alignment explanation
Indices: 1174055--1174088 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1174045 GCTTTTTAAA
1174055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1174089 TGAAATGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1174337 original size:41 final size:41
Alignment explanation
Indices: 1174290--1174624 Score: 264
Period size: 41 Copynumber: 8.1 Consensus size: 41
1174280 AATACTATAC
* *
1174290 TTTAGTGGCGTTTGTATAAAAACGCCGCTAAAGAATCGTAA
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGAATCGTAA
* * * *
1174331 TGTAGTGGCGTTTTTATACAAACGCCGCTATAA-ACTAGTAT
1 TTTAGTGGCGTTTTTATACAAACGCCGCTA-AAGAATCGTAA
* * *
1174372 TTTAGTGGCGTTTTTACACAAACGCCGCTATAGACAT-GTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGA-ATCGTAA
* * * * *
1174413 TTTTGTGGCGTTTTAATACCAAACGCCGCTATAGACTCGTAC
1 TTTAGTGGCGTTTTTATA-CAAACGCCGCTAAAGAATCGTAA
* * * * * *
1174455 TTTAGTGACATTTTTACACAAACGCCGCTATAGGCA-CGTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTA-AAGAATCGTAA
* * * * * *
1174496 TTTTGTGGCGTTTTAATACCAAATGCCGCTATAGATTCGTAC
1 TTTAGTGGCGTTTTTATA-CAAACGCCGCTAAAGAATCGTAA
* * * *
1174538 TTTAGTGGCGTTTTTTACACAAACGCCGCTATATACA-CGTAC
1 TTTAGTGGCG-TTTTTATACAAACGCCGCTAAAGA-ATCGTAA
* * * *
1174580 TTTTGTGGCGTTTTAATACCAAACGCCGCTATAGACTCGTAA
1 TTTAGTGGCGTTTTTATA-CAAACGCCGCTAAAGAATCGTAA
1174622 TTT
1 TTT
1174625 GATTGTTTAC
Statistics
Matches: 236, Mismatches: 46, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
40 1 0.00
41 117 0.50
42 112 0.47
43 6 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGAATCGTAA
Found at i:1174444 original size:42 final size:42
Alignment explanation
Indices: 1174287--1174620 Score: 359
Period size: 42 Copynumber: 8.0 Consensus size: 42
1174277 CAAAATACTA
* *
1174287 TACTTTAGTGGCGTTTGTATA-AAAACGCCGCTAAAGA-ATCG
1 TACTTTAGTGGCGTTT-TATACCAAACGCCGCTATAGACATCG
* * * *
1174328 TAATGTAGTGGCGTTTTTATA-CAAACGCCGCTATAAAC-TAG
1 TACTTTAGTGGCG-TTTTATACCAAACGCCGCTATAGACATCG
*
1174369 TATTTTAGTGGCGTTTT-TACACAAACGCCGCTATAGACAT-G
1 TACTTTAGTGGCGTTTTATAC-CAAACGCCGCTATAGACATCG
*
1174410 TACTTTTGTGGCGTTTTAATACCAAACGCCGCTATAGAC-TCG
1 TACTTTAGTGGCGTTTT-ATACCAAACGCCGCTATAGACATCG
* * *
1174452 TACTTTAGTGACATTTT-TACACAAACGCCGCTATAGGCA-CG
1 TACTTTAGTGGCGTTTTATAC-CAAACGCCGCTATAGACATCG
* * *
1174493 TACTTTTGTGGCGTTTTAATACCAAATGCCGCTATAGA-TTCG
1 TACTTTAGTGGCGTTTT-ATACCAAACGCCGCTATAGACATCG
* *
1174535 TACTTTAGTGGCGTTTTTTACACAAACGCCGCTATATACA-CG
1 TACTTTAGTGGCGTTTTATAC-CAAACGCCGCTATAGACATCG
*
1174577 TACTTTTGTGGCGTTTTAATACCAAACGCCGCTATAGAC-TCG
1 TACTTTAGTGGCGTTTT-ATACCAAACGCCGCTATAGACATCG
1174619 TA
1 TA
1174621 ATTTGATTGT
Statistics
Matches: 247, Mismatches: 29, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.01
40 7 0.03
41 109 0.44
42 120 0.49
43 9 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (42 bp):
TACTTTAGTGGCGTTTTATACCAAACGCCGCTATAGACATCG
Found at i:1174469 original size:83 final size:83
Alignment explanation
Indices: 1174287--1174620 Score: 456
Period size: 83 Copynumber: 4.0 Consensus size: 83
1174277 CAAAATACTA
* * * * * * * * *
1174287 TACTTTAGTGGCGTTTGTATAAAAACGCCGCTAAAGA-ATCGTAATGTAGTGGCGTTTTTATA-C
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACA-CGTACTTTTGTGGCGTTTTAATACC
* *
1174350 AAACGCCGCTATAAACTAG
65 AAACGCCGCTATAGACTCG
* * *
1174369 TATTTTAGTGGCGTTTTTACACAAACGCCGCTATAGACATGTACTTTTGTGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
1174434 AACGCCGCTATAGACTCG
66 AACGCCGCTATAGACTCG
* *
1174452 TACTTTAGTGACATTTTTACACAAACGCCGCTATAGGCACGTACTTTTGTGGCGTTTTAATACCA
1 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
* *
1174517 AATGCCGCTATAGATTCG
66 AACGCCGCTATAGACTCG
* *
1174535 TACTTTAGTGGCGTTTTTTACACAAACGCCGCTATATACACGTACTTTTGTGGCGTTTTAATACC
1 TACTTTAGTGGC-ATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACC
1174600 AAACGCCGCTATAGACTCG
65 AAACGCCGCTATAGACTCG
1174619 TA
1 TA
1174621 ATTTGATTGT
Statistics
Matches: 224, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
82 50 0.22
83 106 0.47
84 68 0.30
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (83 bp):
TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTACTTTTGTGGCGTTTTAATACCA
AACGCCGCTATAGACTCG
Found at i:1176094 original size:22 final size:22
Alignment explanation
Indices: 1176069--1176115 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
1176059 TTTGTAAAGC
1176069 CTTCTTGATCCTTGAATGTTTA
1 CTTCTTGATCCTTGAATGTTTA
1176091 CTTCTTGATCCTTGAATGTTTA
1 CTTCTTGATCCTTGAATGTTTA
1176113 CTT
1 CTT
1176116 TTTGTAAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (22 bp):
CTTCTTGATCCTTGAATGTTTA
Found at i:1178064 original size:43 final size:43
Alignment explanation
Indices: 1177824--1178115 Score: 209
Period size: 43 Copynumber: 6.7 Consensus size: 43
1177814 TATACATAGT
* * *
1177824 TATTAGCGGCGTTTTTTTACCACAAACGCCGCTAAATATCATA-ACA
1 TATT-GCGGCGTTTTTTGA--ACAAACGCCGCTAAATAGCA-ACACC
* * * * * ** * *
1177870 TGTAGCGGC-ATTTTCGATAAAAACGCCGCTAAATCTCAACGCT
1 TATTGCGGCGTTTTTTGA-ACAAACGCCGCTAAATAGCAACACC
* * * *
1177913 TATTGCGGCGCTTGTTTGAA-AAACACCGCTAAACAACAACACC
1 TATTGCGGCG-TTTTTTGAACAAACGCCGCTAAATAGCAACACC
* * *
1177956 TATTGCGGCATTTTTGGGAA-AAACGCCGCTAAA-CGACAACACC
1 TATTGCGGCGTTTTT-TGAACAAACGCCGCTAAATAG-CAACACC
*
1177999 TATTGCGGCG-TTTTTAAGACAAACGCCGCTAAATAGCAACACC
1 TATTGCGGCGTTTTTTGA-ACAAACGCCGCTAAATAGCAACACC
* * * **
1178042 TATTGCGGCGTTTTTTCAACAAACGCCGCTATATATCGTCACC
1 TATTGCGGCGTTTTTTGAACAAACGCCGCTAAATAGCAACACC
*
1178085 TATTGCGGCGTTTTTCCTTAACAAACGCCGC
1 TATTGCGGCGTTTTT--TGAACAAACGCCGC
1178116 GAACTTTAGC
Statistics
Matches: 198, Mismatches: 37, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 10 0.05
43 149 0.75
44 13 0.07
45 23 0.12
46 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
TATTGCGGCGTTTTTTGAACAAACGCCGCTAAATAGCAACACC
Found at i:1179141 original size:18 final size:18
Alignment explanation
Indices: 1179118--1179165 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
1179108 AAATTGTCCT
* *
1179118 TATTATATATTTGTATAA
1 TATTATATATTTGAAAAA
*
1179136 TATTATA-AGTTGAAAAA
1 TATTATATATTTGAAAAA
1179153 TATTTATATATTT
1 TA-TTATATATTT
1179166 TCTTTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 9 0.38
18 12 0.50
19 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (18 bp):
TATTATATATTTGAAAAA
Found at i:1184063 original size:25 final size:26
Alignment explanation
Indices: 1184013--1184063 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
1184003 TTGCACCTCG
* *
1184013 TTAAAATTTTATACATTAATTTTCTT
1 TTAAAATTTTATAAATTAATTCTCTT
*
1184039 TTAAAA-TTTATAAATTCATTCTCTT
1 TTAAAATTTTATAAATTAATTCTCTT
1184064 AATAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (26 bp):
TTAAAATTTTATAAATTAATTCTCTT
Found at i:1184069 original size:26 final size:26
Alignment explanation
Indices: 1184014--1184070 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
1184004 TGCACCTCGT
* * *
1184014 TAAAATTTTATACATTAATTTTCTTT
1 TAAAATTTTATAAATTAATTCTCTTA
*
1184040 TAAAA-TTTATAAATTCATTCTCTTAA
1 TAAAATTTTATAAATTAATTCTCTT-A
1184066 TAAAA
1 TAAAA
1184071 AAAAATTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TAAAATTTTATAAATTAATTCTCTTA
Found at i:1184883 original size:23 final size:23
Alignment explanation
Indices: 1184855--1184912 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
1184845 AAATTAATAA
1184855 TATATTATGTAAAATGTTTCGAT
1 TATATTATGTAAAATGTTTCGAT
1184878 TATATTATGTAAAATGTTTCGAT
1 TATATTATGTAAAATGTTTCGAT
1184901 TATA--ATGTAAAA
1 TATATTATGTAAAA
1184913 ATTATAACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.23
23 27 0.77
ACGTcount: A:0.40, C:0.03, G:0.12, T:0.45
Consensus pattern (23 bp):
TATATTATGTAAAATGTTTCGAT
Found at i:1184955 original size:13 final size:13
Alignment explanation
Indices: 1184926--1184960 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
1184916 ATAACTAATA
*
1184926 ATATTAAAT-ATT
1 ATATTAAATAAAT
1184938 ATATTAAATAAAT
1 ATATTAAATAAAT
1184951 ATATTAAATA
1 ATATTAAATA
1184961 TATTTATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTAAATAAAT
Found at i:1187404 original size:13 final size:14
Alignment explanation
Indices: 1187377--1187405 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1187367 GTTGTACTTT
1187377 TTTTAAAAATGTAA
1 TTTTAAAAATGTAA
1187391 TTTTAAAAAT-TAA
1 TTTTAAAAATGTAA
1187404 TT
1 TT
1187406 GTGAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TTTTAAAAATGTAA
Found at i:1188054 original size:25 final size:25
Alignment explanation
Indices: 1188017--1188075 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
1188007 TATTATTATT
* *
1188017 TCGGTTCGAATTTTTAAGTTATATA
1 TCGGGTCGGATTTTTAAGTTATATA
1188042 TCGGGTCGGATTTTTAAGTTATATA
1 TCGGGTCGGATTTTTAAGTTATATA
1188067 TCGGGTCGG
1 TCGGGTCGG
1188076 GTACGAGTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.42
Consensus pattern (25 bp):
TCGGGTCGGATTTTTAAGTTATATA
Found at i:1197640 original size:21 final size:21
Alignment explanation
Indices: 1197614--1197711 Score: 110
Period size: 21 Copynumber: 4.7 Consensus size: 21
1197604 TAGTCGTACC
1197614 AAAGACGAGAAGACCGTTCAT
1 AAAGACGAGAAGACCGTTCAT
*
1197635 AAAGACGAGAAGACCGTTCAA
1 AAAGACGAGAAGACCGTTCAT
* * *
1197656 AAAGATGAGAAGTCCATTCAT
1 AAAGACGAGAAGACCGTTCAT
* *
1197677 AGAGAC-AGGAAGACCCTTCAT
1 AAAGACGA-GAAGACCGTTCAT
1197698 AAAGAC-ATGAAGAC
1 AAAGACGA-GAAGAC
1197712 TACATCACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 1 0.02
21 64 0.98
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.14
Consensus pattern (21 bp):
AAAGACGAGAAGACCGTTCAT
Found at i:1202718 original size:108 final size:108
Alignment explanation
Indices: 1202492--1202737 Score: 316
Period size: 108 Copynumber: 2.3 Consensus size: 108
1202482 TTCACCGGAG
* *
1202492 AATAGTGAAGCAAACCATCTGAAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTGAAGCCTTC
1 AATAGTGAAGCAATCCATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACAATCTGAAGCCTTC
* ** *
1202557 ACCGGAGAATAGTGAAGCAAACCATCTGAAGCCTTCATCGGAG
66 ACCAGAGAATAGTGAAGCAAACCATCTGAAGCCTTCATCCAAA
* * * *
1202600 AATAGGGAAGCAATCAATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCAT-AAGTCTT
1 AATAGTGAAGCAATCCATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACAATC-TGAAGCCTT
* * *
1202664 CACCAGAGAGTAGTGAAGCAAACCATCTTAAGTCTTCA-CCAAA
65 CACCAGAGAATAGTGAAGCAAACCATCTGAAGCCTTCATCCAAA
* *
1202707 AAGTAGTGAAGCAGATCCATTTTAAGCCTTC
1 AA-TAGTGAAGCA-ATCCATCTGAAGCCTTC
1202738 TCAGAAGAGT
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
107 4 0.03
108 99 0.84
109 15 0.13
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (108 bp):
AATAGTGAAGCAATCCATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACAATCTGAAGCCTTC
ACCAGAGAATAGTGAAGCAAACCATCTGAAGCCTTCATCCAAA
Found at i:1202719 original size:36 final size:36
Alignment explanation
Indices: 1202477--1202703 Score: 339
Period size: 36 Copynumber: 6.3 Consensus size: 36
1202467 AGTCAATCCT
1202477 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
* *
1202513 AAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
1202549 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
* * * *
1202585 AAGCCTTCATCGGAGAATAGGGAAGCAATCAATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
1202621 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCAT-
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATC-TG
* * * *
1202657 AAGTCTTCACCAGAGAGTAGTGAAGCAAACCATCTT
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
*
1202693 AAGTCTTCACC
1 AAGCCTTCACC
1202704 AAAAAGTAGT
Statistics
Matches: 174, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
35 1 0.01
36 172 0.99
37 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (36 bp):
AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
Found at i:1203187 original size:51 final size:51
Alignment explanation
Indices: 1203119--1203524 Score: 461
Period size: 51 Copynumber: 7.8 Consensus size: 51
1203109 AAGATTATTT
* *
1203119 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTCC
* * * * * * *
1203170 GAGTTCCATACTTCCTAGATAAAGAATGAGCGAACCCGTGTGAAGATATGC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTCC
* * * *
1203221 GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTAAAGATGTTC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTCC
* *
1203272 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTCT
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTCC
* * *
1203325 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGATGTTC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTCC
* * * * *
1203376 GAGTTCTATACTCCTTAAAGAAGGAAGGAGCGAACCCGTTTGAAAAGATTTTC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG--AAGATGTCC
* * ** *
1203429 GAGTTCTATACTCCCTAGAGAAAGGGGGAGCGAACCCGTTTGAAGAATATGTCT
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAG---ATGTCC
* * * *
1203483 GAGTTCCATACTCCCTAGAGAAATAGGGAGCGAACCCATTTG
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG
1203525 TTGAAGATTG
Statistics
Matches: 304, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
51 171 0.56
52 2 0.01
53 90 0.30
54 41 0.13
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (51 bp):
GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTCC
Found at i:1203371 original size:104 final size:104
Alignment explanation
Indices: 1203118--1203524 Score: 516
Period size: 104 Copynumber: 3.9 Consensus size: 104
1203108 GAAGATTATT
* *
1203118 TGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCCGAGTTCCATACTT
1 TGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATAC-T
* * * * *
1203183 CC-TAGATAAAGAATGAGCGAACCCGTGTGAAGATATG-C
65 CCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTC
* * * *
1203221 -GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTAAAGATGTTCGAGTTCCATACTC
1 TGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
1203285 CTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTC
66 CTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTC
* *
1203324 TGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGATGTTCGAGTTCTATACTC
1 TGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
* * *
1203389 CTTAAAGAAGGAAGGAGCGAACCCGTTTGAAAAGAT-TT
66 CTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTC
* * * *
1203427 TCGAGTTCTATACTCCCTAGAGAAAGGGGGAGCGAACCCGTTTGAAGAATATGTCTGAGTTCCAT
1 T-GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAG-ATGT-TC-GAGTTCCAT
* * * * *
1203492 ACTCCCTAGAGAAATAGGGAGCGAACCCATTTG
62 ACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1203525 TTGAAGATTG
Statistics
Matches: 265, Mismatches: 32, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
101 3 0.01
102 86 0.32
103 3 0.01
104 133 0.50
105 3 0.01
106 2 0.01
107 35 0.13
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23
Consensus pattern (104 bp):
TGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
CTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTC
Found at i:1203559 original size:53 final size:53
Alignment explanation
Indices: 1203526--1203844 Score: 503
Period size: 53 Copynumber: 5.9 Consensus size: 53
1203516 ACCCATTTGT
* * * * *
1203526 TGAAGATTGTGGGTCTTATACTCTCGGAAGAAATAGGGAGCAGACACGATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
*
1203579 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
*
1203634 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
*
1203687 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1203742 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* * *
1203795 TGAAGATTGTAGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACGAT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGAT
1203845 CGTGGAAGCA
Statistics
Matches: 248, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
53 148 0.60
54 4 0.02
55 96 0.39
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (53 bp):
TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
Found at i:1203638 original size:108 final size:108
Alignment explanation
Indices: 1203526--1203844 Score: 552
Period size: 108 Copynumber: 3.0 Consensus size: 108
1203516 ACCCATTTGT
* * * *
1203526 TGAAGATTGTGGGTCTTATACTCTCGGAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTC
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
1203591 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
66 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1203634 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
1203699 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
66 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* *
1203742 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG-TA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
* *
1203806 G-GTCTTATACTCTCTGAAGATATAGGGGGCAGACACGAT
66 GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGAT
1203845 CGTGGAAGCA
Statistics
Matches: 203, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
106 36 0.18
107 2 0.01
108 165 0.81
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (108 bp):
TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
Found at i:1203671 original size:161 final size:161
Alignment explanation
Indices: 1203501--1203839 Score: 506
Period size: 161 Copynumber: 2.1 Consensus size: 161
1203491 TACTCCCTAG
*
1203501 AGAAATAGGGAGC-GAAC-CCATTTGTTGAAGATTG-T-GGGTCTTATACTCTCGGAAGAAATAG
1 AGAAATAGGGAGCAG-ACGCCA-TTGTTGAAGATTGTTCGAGTCTTATACTCTCGGAAGAAATAG
*
1203562 GGAGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
64 GGAGCAGACACGATCGATGAAGATTG-T-GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
*
1203627 CGATTGATGAAGATTGTGGGTCTTATACTCTCTGA
127 CGATTGATGAAGATTGTAGGTCTTATACTCTCTGA
* * *
1203662 AGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG
1 AGAAATAGGGAGCAGACGCCATTGTTGAAGATTGTTCGAGTCTTATACTCTCGGAAGAAATAGGG
* * * *
1203727 GGCAGACGCGATTGATGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGAT
66 AGCAGACACGATCGATGAAGATTGTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGAT
1203792 TGATGAAGATTGTAGGTCTTATACTCTCTGA
131 TGATGAAGATTGTAGGTCTTATACTCTCTGA
* *
1203823 AGATATAGGGGGCAGAC
1 AGAAATAGGGAGCAGAC
1203840 ACGATCGTGG
Statistics
Matches: 163, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
161 112 0.69
162 5 0.03
163 46 0.28
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (161 bp):
AGAAATAGGGAGCAGACGCCATTGTTGAAGATTGTTCGAGTCTTATACTCTCGGAAGAAATAGGG
AGCAGACACGATCGATGAAGATTGTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGAT
TGATGAAGATTGTAGGTCTTATACTCTCTGA
Found at i:1210380 original size:22 final size:21
Alignment explanation
Indices: 1210338--1210377 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1210328 GAGTTTATTT
*
1210338 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
1210359 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
1210378 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:1216051 original size:22 final size:22
Alignment explanation
Indices: 1216025--1216073 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
1216015 CTGATTATTT
1216025 ATGATCTTGTGAAAATTATCAG
1 ATGATCTTGTGAAAATTATCAG
1216047 ATGATCTTGTGAAAATTATCAG
1 ATGATCTTGTGAAAATTATCAG
1216069 ATGAT
1 ATGAT
1216074 TATTTTCAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (22 bp):
ATGATCTTGTGAAAATTATCAG
Found at i:1218837 original size:2 final size:2
Alignment explanation
Indices: 1218830--1218858 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1218820 ATTTATCTTT
1218830 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1218859 TTGATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1224866 original size:23 final size:23
Alignment explanation
Indices: 1224833--1224891 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
1224823 TTTTTCATTT
*
1224833 ATTTAACGTTCATGAAC-TTATTC
1 ATTTAATGTTCATGAACGTT-TTC
1224856 ATTTAATGTTCATGAACGTTTTC
1 ATTTAATGTTCATGAACGTTTTC
*
1224879 ATTTAATATTCAT
1 ATTTAATGTTCAT
1224892 TTATCGTTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 31 0.94
24 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (23 bp):
ATTTAATGTTCATGAACGTTTTC
Found at i:1231190 original size:26 final size:25
Alignment explanation
Indices: 1231161--1231209 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
1231151 CAGGGCAATG
*
1231161 GAAAGATAAACGATGAAAAAGAGAAA
1 GAAAGATAAAAGA-GAAAAAGAGAAA
*
1231187 GAAAGATAAAAGAGAAAGAGAGA
1 GAAAGATAAAAGAGAAAAAGAGA
1231210 GGGTGTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.65, C:0.02, G:0.27, T:0.06
Consensus pattern (25 bp):
GAAAGATAAAAGAGAAAAAGAGAAA
Done.