Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000082.1 Hibiscus syriacus cultivar Beakdansim tig00000146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58735

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--77
25
2.8
25
91
8
126
38
19
15
26
1.92
1675--1703
14
2.0
15
93
6
51
17
0
6
75
1.01
2487--2534
24
2.0
23
84
4
60
31
12
4
52
1.58
14286--14583
92
3.2
92
90
2
431
26
29
19
25
1.98
14789--14844
3
19.0
3
78
10
62
28
3
1
66
1.19
14963--15084
25
4.9
25
90
4
192
36
18
15
28
1.92
16715--16747
15
2.1
16
94
5
59
15
0
6
78
0.93
16715--16768
26
2.1
26
82
6
65
18
0
9
72
1.11
18213--18252
2
20.0
2
100
0
80
50
0
0
50
1.00
18509--18576
30
2.3
27
79
18
73
35
5
2
55
1.39
18520--18586
31
2.2
31
84
10
84
37
5
2
53
1.41
19390--19516
62
2.0
62
100
0
254
37
12
6
43
1.68
23938--23965
13
2.2
13
100
0
56
35
28
14
21
1.92
28309--28350
21
2.0
21
90
0
66
23
23
23
28
2.00
29964--30015
26
2.0
26
100
0
104
38
23
15
23
1.92
30731--31320
302
2.0
302
98
0
1144
27
18
10
43
1.83
33405--33457
14
4.1
14
72
18
51
60
20
9
9
1.55
33406--33461
24
2.3
24
90
0
85
58
21
8
10
1.58
37720--37794
22
3.4
22
92
0
123
29
25
24
21
1.99
38056--38126
29
2.5
28
90
2
106
39
12
8
39
1.74
38429--38580
68
2.3
67
87
1
205
17
25
27
29
1.97
38560--38602
21
2.0
21
86
0
59
16
25
27
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44647--44713
22
3.0
22
100
0
134
26
26
26
19
1.99
44975--45045
29
2.5
28
90
2
106
39
12
8
39
1.74
45347--45498
68
2.3
67
87
1
205
17
25
27
29
1.97
45478--45520
21
2.0
21
86
0
59
16
25
27
30
1.97
49310--49512
31
7.1
30
77
11
178
53
0
7
38
1.33
49305--49368
23
2.8
23
83
2
67
56
0
4
39
1.20
49305--49516
85
2.5
83
78
11
225
54
0
7
38
1.32
49350--49661
30
10.7
29
75
12
237
52
2
5
38
1.39
49307--49516
27
7.5
27
80
10
181
54
0
7
38
1.32
49364--49655
115
2.5
116
78
6
299
53
2
5
38
1.39
49386--49646
85
3.1
84
75
15
214
52
3
5
38
1.41
49305--49681
30
13.1
29
71
13
226
53
2
5
38
1.36
49305--49669
115
3.2
113
77
9
296
53
2
5
38
1.37
53822--53907
30
2.9
29
72
10
77
46
2
3
47
1.32
53843--53880
19
2.1
19
90
5
60
39
0
0
60
0.97
54353--54415
33
1.9
33
93
0
108
53
12
7
25
1.65
58637--58716
39
2.0
39
85
9
108
37
25
21
16
1.93
58662--58723
19
3.1
20
76
6
72
37
27
19
16
1.93

Tables:   1

The End!