genome.fa.s820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000820.1 Hibiscus syriacus cultivar Beakdansim tig00001587_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111424

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12052--12337	135	2.0	141	84	9	370	46	9	13	31	1.75
13974--14009	2	18.0	2	100	0	72	50	0	0	50	1.00
15304--15437	43	3.1	43	100	0	268	25	6	14	53	1.64
16893--16954	29	2.2	29	85	2	81	43	9	6	40	1.63
17037--17126	29	3.0	29	76	15	94	40	7	10	42	1.67
21118--21717	201	3.0	201	99	0	1173	34	7	12	45	1.70
21934--21984	13	3.9	13	76	0	57	43	19	7	29	1.79
21778--22379	310	1.9	311	87	3	890	40	17	7	34	1.77
25323--25396	30	2.5	30	75	2	78	37	27	25	9	1.87
26395--26570	2	89.0	2	79	4	178	3	50	1	43	1.30
27443--27480	20	1.9	20	88	0	58	34	28	21	15	1.94
27528--27571	18	2.4	18	88	0	61	25	27	13	34	1.93
32045--32175	20	6.9	20	72	19	86	37	18	12	31	1.89
32104--32196	20	4.7	20	86	4	109	31	18	12	37	1.88
33337--33393	25	2.3	25	76	11	71	22	3	17	56	1.56
37361--37413	23	2.2	24	90	9	83	18	1	3	75	1.05
37366--37411	11	3.8	12	82	11	58	19	2	4	73	1.10
37677--37961	140	2.0	140	96	0	525	35	13	18	32	1.89
41598--41638	20	2.0	20	100	0	82	24	7	29	39	1.82
41654--42252	298	2.0	299	95	0	1074	32	17	17	32	1.93
45419--45447	14	2.1	14	93	6	51	79	0	20	0	0.74
46037--46095	31	1.9	31	100	0	118	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46578--46625	25	2.0	25	88	8	73	18	6	4	70	1.25
46578--46626	13	3.9	13	75	20	50	20	6	4	69	1.27
47978--48059	18	4.7	18	77	4	87	40	8	23	28	1.83
47980--48059	35	2.3	35	91	0	133	41	8	21	28	1.83
48638--48718	33	2.4	34	93	2	146	40	38	9	11	1.74
51159--51543	190	2.0	194	95	3	708	31	19	15	32	1.93
59838--59882	12	3.9	12	82	11	58	46	22	13	17	1.83
59852--59886	12	2.9	12	95	0	61	45	22	14	17	1.84
60719--60812	31	3.0	32	84	4	111	35	22	15	26	1.94
60718--60815	32	3.1	32	83	4	119	33	24	15	26	1.95
62971--63026	3	18.3	3	88	3	85	30	0	3	66	1.09
70560--70708	77	1.9	78	81	9	180	43	4	8	42	1.56
71445--71538	29	3.2	30	68	17	97	22	8	20	48	1.76
71413--71575	58	2.8	58	98	0	308	22	9	21	46	1.81
73372--73459	42	2.1	42	81	12	101	57	3	10	28	1.47
78262--78306	12	3.8	12	81	0	54	53	2	20	24	1.57
80588--80633	22	2.1	22	88	8	67	32	13	15	39	1.85
84967--84998	17	1.9	16	93	6	55	56	0	3	40	1.15
84964--84999	16	2.2	16	86	13	56	58	0	2	38	1.13
85073--85116	17	2.5	18	96	3	81	70	0	0	29	0.88
85069--85126	18	3.4	17	83	9	73	65	0	0	34	0.93
86471--86607	24	5.6	24	72	17	81	73	1	6	18	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86544--86680	4	35.8	4	75	13	58	72	0	1	25	0.98
86543--86611	14	4.7	14	75	16	68	79	1	1	17	0.88
86481--86615	37	3.6	37	78	7	116	74	1	6	17	1.10
86586--86730	41	3.5	40	75	14	143	68	0	1	29	1.03
86689--86753	26	2.5	26	85	5	78	69	3	3	24	1.17
87944--87983	21	1.9	21	100	0	80	45	15	20	20	1.86
88082--88252	36	4.9	36	68	15	117	37	14	19	28	1.91
88058--88315	102	2.5	102	91	1	410	37	14	18	29	1.91
88059--88354	102	2.9	101	87	1	394	37	14	18	28	1.91
88547--88869	106	3.0	106	87	0	441	21	18	24	34	1.96
89429--89537	32	3.4	32	78	3	121	38	17	11	32	1.86
89444--89531	31	2.8	32	82	3	106	38	18	11	31	1.86
90464--90601	69	2.0	69	88	0	204	26	13	21	38	1.91
90673--90710	19	1.9	20	89	10	60	7	10	5	76	1.15
90660--90723	21	3.2	20	78	8	60	6	15	3	75	1.14
93741--94007	22	12.1	21	65	19	91	69	1	4	23	1.16
93824--93887	17	3.9	16	75	13	60	78	1	3	17	0.96
93823--93933	46	2.4	45	81	10	127	72	0	2	23	1.02
95605--95663	21	2.8	21	97	0	109	25	8	40	25	1.83
96633--96670	6	6.3	6	100	0	76	15	0	52	31	1.43
96637--96679	18	2.4	18	92	0	68	16	4	51	27	1.64
98787--98915	59	2.1	61	86	8	176	41	6	20	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106237--106308	21	3.5	21	72	14	69	30	19	20	29	1.97
110882--110965	29	2.9	28	75	18	73	39	15	3	41	1.64

Tables:   1

The End!