genome.fa.s8200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008200.1 Hibiscus syriacus cultivar Beakdansim tig00110820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59290

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5409--5492	21	3.9	21	77	10	80	22	34	25	17	1.96
12325--12392	2	34.0	2	100	0	136	50	0	0	50	1.00
15818--15934	34	3.6	34	74	21	131	42	11	12	33	1.78
16211--16272	23	2.8	22	75	20	58	20	6	4	67	1.32
16226--16271	24	2.0	23	83	12	58	19	6	4	69	1.28
16287--16342	21	2.7	21	71	20	53	37	1	1	58	1.19
16329--16433	28	3.9	27	78	16	94	22	4	0	71	1.11
16325--16421	13	7.4	13	68	15	56	25	3	1	70	1.09
16552--16581	15	2.0	15	100	0	60	20	20	0	60	1.37
20485--20834	183	1.9	183	94	0	619	28	21	20	30	1.98
22122--22208	37	2.4	37	88	1	122	25	20	13	40	1.89
22033--22337	102	3.0	102	94	1	504	30	19	13	37	1.89
22224--22478	36	7.4	36	73	15	118	29	18	11	40	1.86
22292--22350	30	2.0	30	86	6	84	40	16	10	32	1.82
22364--22478	36	3.1	36	85	4	167	29	20	11	39	1.87
22519--22633	33	3.5	33	89	5	162	37	19	11	32	1.87
22588--22773	67	2.7	67	86	1	255	29	21	12	37	1.90
23785--23908	34	3.8	34	73	20	127	42	10	16	30	1.81
24181--24226	24	2.0	23	83	12	58	19	6	4	69	1.28
24282--24308	2	13.5	2	100	0	54	48	0	0	51	1.00
24298--24383	30	2.8	29	80	18	95	25	2	1	70	1.06
24296--24383	32	2.8	31	80	17	103	26	2	1	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24366--24406	21	2.0	21	85	0	55	12	7	2	78	1.06
24391--24423	15	2.2	15	94	0	57	0	15	0	84	0.61
24529--24558	15	2.0	15	100	0	60	20	20	0	60	1.37
30488--30519	2	16.0	2	100	0	64	50	0	0	50	1.00
34261--34418	21	7.8	20	72	7	86	38	25	17	18	1.92
34385--34578	20	9.7	20	84	2	210	35	25	20	19	1.95
34959--35029	33	2.2	33	89	0	106	11	23	16	47	1.79
35102--35218	41	3.1	38	79	14	136	45	17	25	11	1.82
35109--35184	21	3.7	21	85	3	109	44	18	25	11	1.83
35169--35225	14	3.7	14	75	20	60	43	22	24	8	1.81
35161--35241	33	2.5	33	93	0	135	45	23	22	8	1.79
35237--35334	19	5.7	19	68	22	72	10	24	23	41	1.85
35259--35362	14	6.7	14	78	20	109	8	25	24	41	1.83
35242--35348	33	3.2	33	97	0	196	9	24	23	42	1.83
37069--37542	93	5.1	93	98	0	921	22	12	18	45	1.83
37586--37714	19	7.3	19	75	17	125	45	28	17	8	1.77
37622--37714	33	2.8	32	91	4	150	46	27	18	7	1.76
37586--37714	52	2.5	52	74	14	140	45	28	17	8	1.77
37710--37844	19	7.6	19	75	16	128	11	19	23	45	1.82
37732--37788	14	3.7	14	77	20	60	10	21	22	45	1.82
37715--37807	33	2.8	33	95	0	168	10	20	21	47	1.80
39770--39805	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39912--40009	19	5.4	19	84	13	143	45	17	22	14	1.84
39912--40028	53	2.2	53	98	1	227	44	17	23	13	1.85
42344--42368	12	2.1	12	100	0	50	0	28	0	72	0.86
42542--42588	24	2.0	24	87	8	69	38	21	14	25	1.92
43270--43519	20	12.5	20	84	3	261	19	18	24	37	1.94
43506--43588	21	4.0	21	73	6	78	25	16	24	33	1.96
43486--43584	42	2.4	43	77	11	100	21	18	23	37	1.94
51286--51344	24	2.5	24	82	12	70	37	3	1	57	1.25
52001--52036	18	2.0	18	88	0	54	61	0	5	33	1.19
53749--53782	3	12.0	3	87	12	54	64	0	0	35	0.94
54433--54473	20	2.0	20	90	0	64	31	2	4	60	1.30
55838--55910	35	2.1	35	87	5	103	32	2	17	46	1.63
57508--57555	23	2.1	22	84	7	60	41	8	25	25	1.83

Tables:   1

The End!